Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578550 | XP_003607958.1 | 97.606 | 376 | 9 | 0 | 1 | 376 | 1 | 376 | 0.0 | 753 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578550 | sp|Q9M7Q5|AI5L4_ARATH | 45.897 | 390 | 160 | 11 | 18 | 376 | 23 | 392 | 3.22e-91 | 282 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578550 | G7JL68 | 97.606 | 376 | 9 | 0 | 1 | 376 | 1 | 376 | 0.0 | 753 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0578550 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0578550 | Msa0651640 | 0.952617 | 1.646715e-110 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578550 | MtrunA17_Chr4g0044771 | 97.606 | 376 | 9 | 0 | 1 | 376 | 1 | 376 | 0.0 | 753 |
| Msa0578550 | MtrunA17_Chr3g0133971 | 45.433 | 427 | 151 | 12 | 14 | 376 | 23 | 431 | 8.63e-91 | 279 |
| Msa0578550 | MtrunA17_Chr7g0266211 | 34.307 | 411 | 176 | 16 | 24 | 370 | 45 | 425 | 2.27e-35 | 134 |
| Msa0578550 | MtrunA17_Chr8g0355121 | 45.802 | 131 | 63 | 2 | 17 | 144 | 23 | 148 | 8.37e-30 | 116 |
| Msa0578550 | MtrunA17_Chr8g0355121 | 75.000 | 56 | 13 | 1 | 296 | 350 | 237 | 292 | 2.08e-15 | 76.3 |
| Msa0578550 | MtrunA17_Chr7g0254991 | 45.385 | 130 | 66 | 2 | 17 | 144 | 15 | 141 | 1.20e-26 | 108 |
| Msa0578550 | MtrunA17_Chr7g0254991 | 70.492 | 61 | 14 | 1 | 288 | 344 | 232 | 292 | 2.40e-16 | 79.0 |
| Msa0578550 | MtrunA17_Chr3g0080341 | 45.455 | 132 | 60 | 4 | 18 | 144 | 20 | 144 | 6.22e-25 | 103 |
| Msa0578550 | MtrunA17_Chr3g0080341 | 66.667 | 57 | 18 | 1 | 296 | 352 | 246 | 301 | 6.37e-15 | 75.1 |
| Msa0578550 | MtrunA17_Chr6g0460301 | 41.611 | 149 | 75 | 4 | 18 | 156 | 16 | 162 | 5.04e-24 | 100 |
| Msa0578550 | MtrunA17_Chr5g0440841 | 42.188 | 128 | 59 | 4 | 18 | 138 | 22 | 141 | 3.38e-16 | 77.8 |
| Msa0578550 | MtrunA17_Chr2g0321381 | 36.296 | 135 | 68 | 4 | 19 | 142 | 23 | 150 | 1.26e-14 | 73.9 |
| Msa0578550 | MtrunA17_Chr2g0321411 | 50.575 | 87 | 41 | 2 | 286 | 371 | 194 | 279 | 3.63e-13 | 69.3 |
| Msa0578550 | MtrunA17_Chr1g0201751 | 60.377 | 53 | 21 | 0 | 296 | 348 | 157 | 209 | 1.96e-12 | 66.6 |
| Msa0578550 | MtrunA17_Chr5g0405951 | 51.220 | 82 | 23 | 2 | 301 | 365 | 166 | 247 | 5.89e-12 | 65.1 |
| Msa0578550 | MtrunA17_Chr4g0051101 | 60.377 | 53 | 21 | 0 | 296 | 348 | 125 | 177 | 1.31e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578550 | AT1G49720.1 | 45.897 | 390 | 160 | 11 | 18 | 376 | 23 | 392 | 3.28e-92 | 282 |
| Msa0578550 | AT1G49720.3 | 45.897 | 390 | 160 | 11 | 18 | 376 | 23 | 392 | 3.28e-92 | 282 |
| Msa0578550 | AT4G34000.1 | 44.570 | 442 | 154 | 17 | 15 | 376 | 24 | 454 | 8.09e-92 | 283 |
| Msa0578550 | AT4G34000.4 | 44.570 | 442 | 154 | 17 | 15 | 376 | 24 | 454 | 8.09e-92 | 283 |
| Msa0578550 | AT4G34000.2 | 44.570 | 442 | 154 | 17 | 15 | 376 | 24 | 454 | 8.09e-92 | 283 |
| Msa0578550 | AT1G45249.1 | 47.215 | 413 | 147 | 16 | 18 | 376 | 21 | 416 | 2.85e-89 | 275 |
| Msa0578550 | AT1G45249.7 | 47.215 | 413 | 147 | 16 | 18 | 376 | 36 | 431 | 5.03e-89 | 275 |
| Msa0578550 | AT1G45249.6 | 47.215 | 413 | 147 | 16 | 18 | 376 | 36 | 431 | 5.03e-89 | 275 |
| Msa0578550 | AT3G19290.3 | 44.340 | 424 | 163 | 13 | 10 | 376 | 25 | 432 | 5.15e-88 | 273 |
| Msa0578550 | AT1G49720.2 | 46.301 | 365 | 150 | 10 | 18 | 356 | 23 | 367 | 5.52e-88 | 271 |
| Msa0578550 | AT3G19290.1 | 44.550 | 422 | 164 | 13 | 10 | 376 | 25 | 431 | 6.21e-88 | 272 |
| Msa0578550 | AT3G19290.5 | 44.550 | 422 | 164 | 13 | 10 | 376 | 25 | 431 | 6.21e-88 | 272 |
| Msa0578550 | AT1G45249.3 | 45.991 | 424 | 147 | 17 | 18 | 376 | 21 | 427 | 1.23e-85 | 266 |
| Msa0578550 | AT4G34000.3 | 44.717 | 407 | 140 | 16 | 15 | 347 | 24 | 419 | 1.91e-84 | 264 |
| Msa0578550 | AT3G19290.4 | 43.970 | 398 | 157 | 11 | 10 | 356 | 25 | 407 | 6.12e-83 | 259 |
| Msa0578550 | AT1G45249.10 | 43.889 | 360 | 135 | 15 | 18 | 327 | 21 | 363 | 2.04e-64 | 210 |
| Msa0578550 | AT1G45249.5 | 43.889 | 360 | 135 | 15 | 18 | 327 | 21 | 363 | 2.04e-64 | 210 |
| Msa0578550 | AT3G19290.2 | 41.530 | 366 | 148 | 11 | 10 | 324 | 25 | 375 | 9.43e-64 | 209 |
| Msa0578550 | AT1G45249.4 | 42.744 | 379 | 143 | 17 | 18 | 339 | 21 | 382 | 4.98e-63 | 207 |
| Msa0578550 | AT1G45249.8 | 42.744 | 379 | 143 | 17 | 18 | 339 | 21 | 382 | 4.98e-63 | 207 |
| Msa0578550 | AT1G45249.2 | 42.744 | 379 | 143 | 17 | 18 | 339 | 21 | 382 | 4.98e-63 | 207 |
| Msa0578550 | AT1G45249.9 | 42.744 | 379 | 143 | 17 | 18 | 339 | 21 | 382 | 4.98e-63 | 207 |
| Msa0578550 | AT5G42910.1 | 36.022 | 372 | 167 | 15 | 13 | 353 | 15 | 346 | 3.10e-39 | 144 |
| Msa0578550 | AT3G56850.1 | 49.306 | 144 | 57 | 5 | 10 | 145 | 8 | 143 | 4.59e-31 | 120 |
| Msa0578550 | AT3G56850.1 | 57.143 | 91 | 31 | 3 | 290 | 376 | 211 | 297 | 2.03e-16 | 79.3 |
| Msa0578550 | AT2G41070.5 | 35.503 | 169 | 83 | 2 | 10 | 173 | 8 | 155 | 8.11e-26 | 104 |
| Msa0578550 | AT2G41070.5 | 65.672 | 67 | 20 | 1 | 290 | 353 | 177 | 243 | 1.64e-16 | 79.0 |
| Msa0578550 | AT2G41070.3 | 35.503 | 169 | 83 | 2 | 10 | 173 | 8 | 155 | 1.21e-25 | 104 |
| Msa0578550 | AT2G41070.3 | 68.182 | 66 | 20 | 1 | 280 | 344 | 169 | 234 | 5.08e-16 | 77.8 |
| Msa0578550 | AT2G41070.1 | 35.503 | 169 | 83 | 2 | 10 | 173 | 8 | 155 | 1.21e-25 | 104 |
| Msa0578550 | AT2G41070.1 | 68.182 | 66 | 20 | 1 | 280 | 344 | 169 | 234 | 5.08e-16 | 77.8 |
| Msa0578550 | AT2G41070.2 | 35.503 | 169 | 83 | 2 | 10 | 173 | 8 | 155 | 1.21e-25 | 104 |
| Msa0578550 | AT2G41070.2 | 68.182 | 66 | 20 | 1 | 280 | 344 | 169 | 234 | 5.08e-16 | 77.8 |
| Msa0578550 | AT2G41070.4 | 35.503 | 169 | 83 | 2 | 10 | 173 | 17 | 164 | 1.43e-25 | 104 |
| Msa0578550 | AT2G41070.4 | 74.138 | 58 | 12 | 1 | 290 | 344 | 186 | 243 | 4.89e-16 | 77.8 |
| Msa0578550 | AT3G44460.1 | 44.118 | 136 | 54 | 6 | 18 | 140 | 35 | 161 | 2.34e-20 | 91.3 |
| Msa0578550 | AT2G36270.1 | 35.676 | 185 | 59 | 3 | 16 | 140 | 35 | 219 | 9.31e-20 | 90.9 |
| Msa0578550 | AT2G36270.1 | 67.606 | 71 | 20 | 1 | 289 | 356 | 341 | 411 | 4.39e-18 | 85.9 |
| Msa0578550 | AT2G36270.2 | 35.676 | 185 | 59 | 3 | 16 | 140 | 35 | 219 | 9.31e-20 | 90.9 |
| Msa0578550 | AT2G36270.2 | 67.606 | 71 | 20 | 1 | 289 | 356 | 341 | 411 | 4.39e-18 | 85.9 |
| Msa0578550 | AT2G36270.3 | 35.870 | 184 | 58 | 3 | 17 | 140 | 36 | 219 | 1.29e-19 | 90.5 |
| Msa0578550 | AT2G36270.3 | 63.636 | 77 | 22 | 2 | 289 | 362 | 341 | 414 | 4.73e-18 | 85.9 |
| Msa0578550 | AT4G35900.1 | 53.333 | 75 | 30 | 2 | 302 | 376 | 216 | 285 | 1.96e-13 | 70.5 |
| Msa0578550 | AT2G17770.2 | 51.316 | 76 | 32 | 2 | 301 | 376 | 125 | 195 | 1.13e-12 | 66.6 |
| Msa0578550 | AT5G44080.1 | 63.793 | 58 | 20 | 1 | 289 | 345 | 219 | 276 | 1.19e-12 | 68.6 |
| Msa0578550 | AT1G03970.1 | 60.656 | 61 | 23 | 1 | 289 | 348 | 175 | 235 | 2.89e-12 | 67.0 |
Find 120 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGATACAGGCAGAGTTTA+TGG | 0.190438 | 4_1:+83103794 | Msa0578550:intron |
| ATGCTACAGTTGTAGGTTTC+GGG | 0.224383 | 4_1:-83103066 | None:intergenic |
| CTAAACCATTCATTATTATT+TGG | 0.243582 | 4_1:-83102881 | None:intergenic |
| AGAGAAAAGTTGATGAAGTT+TGG | 0.248226 | 4_1:+83102720 | Msa0578550:CDS |
| CAACAACCAAATGGAAATAA+TGG | 0.257332 | 4_1:+83102947 | Msa0578550:CDS |
| TCTGAACGATCTTCAGATTT+GGG | 0.259642 | 4_1:-83100981 | None:intergenic |
| CTACCACCATTTGGGTTGTT+AGG | 0.265606 | 4_1:-83102653 | None:intergenic |
| CCTAATGTTGGTTGTCTTTG+AGG | 0.269893 | 4_1:-83102776 | None:intergenic |
| GTCTGAACGATCTTCAGATT+TGG | 0.301160 | 4_1:-83100982 | None:intergenic |
| GAAGAAAATGCTACAGTTGT+AGG | 0.325476 | 4_1:-83103073 | None:intergenic |
| TACTTGAGAAGGACACTTAC+AGG | 0.325650 | 4_1:+83103864 | Msa0578550:CDS |
| CTTGCTAGATTAACACTTCC+AGG | 0.329485 | 4_1:-83102464 | None:intergenic |
| AATGCTACAGTTGTAGGTTT+CGG | 0.329976 | 4_1:-83103067 | None:intergenic |
| TTACTTCCTGGAGAAGTAAC+AGG | 0.334643 | 4_1:-83103196 | None:intergenic |
| GGAGGAAGAGGAACATGTTT+AGG | 0.346580 | 4_1:-83102998 | None:intergenic |
| AACAACCAAATGGAAATAAT+GGG | 0.348398 | 4_1:+83102948 | Msa0578550:CDS |
| TCAATTTGTTGAGCATGATT+AGG | 0.349738 | 4_1:-83102854 | None:intergenic |
| AGCTAATATGTATAGGTATT+AGG | 0.365572 | 4_1:+83104001 | Msa0578550:three_prime_UTR |
| CTCCCTCTGTTGATTGCATA+AGG | 0.369742 | 4_1:-83103277 | None:intergenic |
| ATAAAATAAATATCTTCATA+TGG | 0.371925 | 4_1:+83100905 | Msa0578550:five_prime_UTR |
| ATCTTCAGATTTGGGGTGTA+TGG | 0.377957 | 4_1:-83100973 | None:intergenic |
| TTTGCAAACTACCACCATTT+GGG | 0.380553 | 4_1:-83102661 | None:intergenic |
| AAGTGTGTTCCTGTAGAAAA+AGG | 0.390691 | 4_1:+83103301 | Msa0578550:CDS |
| GAGGTCACGGGCTCGCAAAC+AGG | 0.396241 | 4_1:+83103372 | Msa0578550:CDS |
| CTCCTGTCCTTGTGACATAA+TGG | 0.398467 | 4_1:-83103930 | None:intergenic |
| ATATCCCCATTATTTCCATT+TGG | 0.401525 | 4_1:-83102953 | None:intergenic |
| AGAAACATAGACAGTCTAAC+AGG | 0.414524 | 4_1:-83104155 | None:intergenic |
| ATGAGTTACAAAGCACCATT+GGG | 0.419353 | 4_1:+83102516 | Msa0578550:CDS |
| AACATTAGGTGAAGTGACTT+TGG | 0.430676 | 4_1:+83102790 | Msa0578550:CDS |
| CCTCAAAGACAACCAACATT+AGG | 0.434960 | 4_1:+83102776 | Msa0578550:CDS |
| CTGCTTTAAGTCTTTAAAAG+TGG | 0.437653 | 4_1:+83102398 | Msa0578550:five_prime_UTR |
| TTTCTCTGACTAAGTGTCCT+TGG | 0.439082 | 4_1:-83102704 | None:intergenic |
| CTTGGCTTTCAACAACCAAA+TGG | 0.439959 | 4_1:+83102938 | Msa0578550:CDS |
| GTCTATGTTTCTCACCTCTC+TGG | 0.440791 | 4_1:+83104166 | Msa0578550:three_prime_UTR |
| GGCTGAAGTTGCAAAACTTA+AGG | 0.442265 | 4_1:+83103656 | Msa0578550:CDS |
| TATGGAAATGCAGAAAAGTA+AGG | 0.444656 | 4_1:+83103812 | Msa0578550:CDS |
| CGAGGAATTACAAAGAAAAC+AGG | 0.444987 | 4_1:+83103686 | Msa0578550:CDS |
| CAAGCATTGACATCTCTAAC+TGG | 0.446103 | 4_1:+83102611 | Msa0578550:CDS |
| GCATTGTTTAGCAAATGAAT+AGG | 0.446181 | 4_1:-83103097 | None:intergenic |
| AATGGCAGAAGTGTAGTTCC+TGG | 0.450498 | 4_1:+83103133 | Msa0578550:CDS |
| TTAACTCACTCGTGTATGTT+CGG | 0.453359 | 4_1:-83101045 | None:intergenic |
| GCAGAAAAGTAAGGAGGATC+TGG | 0.454613 | 4_1:+83103821 | Msa0578550:CDS |
| TGCTTTAAGTCTTTAAAAGT+GGG | 0.454625 | 4_1:+83102399 | Msa0578550:five_prime_UTR |
| TGATTCAAGTTAATTGATGA+AGG | 0.454755 | 4_1:-83103019 | None:intergenic |
| AAAGGCCTACACTGTTGAAC+TGG | 0.460693 | 4_1:+83103632 | Msa0578550:intron |
| TTACGCTTTGTAATCAAATC+CGG | 0.464033 | 4_1:-83103226 | None:intergenic |
| AAAGACCAAATAATAATGAA+TGG | 0.465002 | 4_1:+83102876 | Msa0578550:CDS |
| AACAATAACACCAATCTACT+TGG | 0.466588 | 4_1:+83102920 | Msa0578550:CDS |
| GGACAGGAGTATTGTATGTA+AGG | 0.469582 | 4_1:+83103944 | Msa0578550:three_prime_UTR |
| GATGAGTTACAAAGCACCAT+TGG | 0.470063 | 4_1:+83102515 | Msa0578550:CDS |
| CTGTTGATTGCATAAGGAAC+TGG | 0.477558 | 4_1:-83103271 | None:intergenic |
| AAAAGTTGATGAAGTTTGGA+GGG | 0.481612 | 4_1:+83102724 | Msa0578550:CDS |
| GAACATACACGAGTGAGTTA+AGG | 0.481910 | 4_1:+83101047 | Msa0578550:five_prime_UTR |
| GGATAGTAGCTAATATGTAT+AGG | 0.482563 | 4_1:+83103994 | Msa0578550:three_prime_UTR |
| GGAACTGGTGACAGTAAAGT+AGG | 0.483859 | 4_1:-83103256 | None:intergenic |
| GTTCCTGGTGTTGGAATGCA+TGG | 0.487439 | 4_1:+83103148 | Msa0578550:CDS |
| AGGGATTTGATGAAAGATAG+TGG | 0.487452 | 4_1:+83102743 | Msa0578550:CDS |
| ACAGCTCCTGTTACTTCTCC+AGG | 0.488845 | 4_1:+83103190 | Msa0578550:CDS |
| GAGAATCAGCTGCGAGGTCA+CGG | 0.489882 | 4_1:+83103359 | Msa0578550:CDS |
| TTGCTAAACAATGCTCAACT+TGG | 0.492309 | 4_1:+83103106 | Msa0578550:CDS |
| GAAAAGTTGATGAAGTTTGG+AGG | 0.496145 | 4_1:+83102723 | Msa0578550:CDS |
| GGGTCAAAATGAACTTCGCT+TGG | 0.497946 | 4_1:+83102420 | Msa0578550:exon |
| TTAATTGATGAAGGAGGAAG+AGG | 0.498832 | 4_1:-83103010 | None:intergenic |
| TCTCTAACTGGTGGAGGAGT+AGG | 0.517394 | 4_1:+83102623 | Msa0578550:CDS |
| AAATAGTTAATTACACAAGA+TGG | 0.517869 | 4_1:-83104062 | None:intergenic |
| TAACAGGGGCACAGGCAGGC+TGG | 0.531222 | 4_1:-83104139 | None:intergenic |
| AGCCATTATGTCACAAGGAC+AGG | 0.531997 | 4_1:+83103928 | Msa0578550:three_prime_UTR |
| GAAGGACCTAACAACCCAAA+TGG | 0.541425 | 4_1:+83102647 | Msa0578550:CDS |
| GTTGTAGGTTTCGGGAAAAG+TGG | 0.542287 | 4_1:-83103058 | None:intergenic |
| AACAGGAGCTGTGACATTTG+AGG | 0.542288 | 4_1:-83103179 | None:intergenic |
| AGAATCAGCTGCGAGGTCAC+GGG | 0.543539 | 4_1:+83103360 | Msa0578550:CDS |
| ATAAAATAAAATACTTGAGA+AGG | 0.546602 | 4_1:+83103853 | Msa0578550:CDS |
| TTCAGATTTGGGGTGTATGG+TGG | 0.549768 | 4_1:-83100970 | None:intergenic |
| TTGTTGAAAGCCAAGTAGAT+TGG | 0.562943 | 4_1:-83102930 | None:intergenic |
| TGAGGGAGTATATTGAAGAC+TGG | 0.563542 | 4_1:-83102487 | None:intergenic |
| GGTCAAAATGAACTTCGCTT+GGG | 0.564260 | 4_1:+83102421 | Msa0578550:exon |
| AAAGTCACTTCACCTAATGT+TGG | 0.567590 | 4_1:-83102788 | None:intergenic |
| AGTCTAACAGGGGCACAGGC+AGG | 0.568754 | 4_1:-83104143 | None:intergenic |
| ATTAGGTGAAGTGACTTTGG+AGG | 0.571566 | 4_1:+83102793 | Msa0578550:CDS |
| GAACTGGTGACAGTAAAGTA+GGG | 0.576448 | 4_1:-83103255 | None:intergenic |
| TCCAGGAAGTAAAATGTCGC+CGG | 0.577416 | 4_1:+83103207 | Msa0578550:CDS |
| GCAATGAGTGTGAAGACACC+TGG | 0.579770 | 4_1:+83102446 | Msa0578550:CDS |
| AGACAGTCTAACAGGGGCAC+AGG | 0.580440 | 4_1:-83104147 | None:intergenic |
| TTGACATCTCTAACTGGTGG+AGG | 0.580857 | 4_1:+83102617 | Msa0578550:CDS |
| TTCAAGTTAATTGATGAAGG+AGG | 0.584325 | 4_1:-83103016 | None:intergenic |
| TCACTCGTGTATGTTCGGTT+CGG | 0.586828 | 4_1:-83101040 | None:intergenic |
| CTGAACGATCTTCAGATTTG+GGG | 0.593647 | 4_1:-83100980 | None:intergenic |
| TACAGGGGTAATCATTCCAA+AGG | 0.605463 | 4_1:+83102294 | Msa0578550:intron |
| GCTTTAAGTCTTTAAAAGTG+GGG | 0.610670 | 4_1:+83102400 | Msa0578550:five_prime_UTR |
| GTAGGTTTCGGGAAAAGTGG+TGG | 0.611415 | 4_1:-83103055 | None:intergenic |
| TTCCTTATGCAATCAACAGA+GGG | 0.614058 | 4_1:+83103275 | Msa0578550:CDS |
| GGTTTCGGGAAAAGTGGTGG+CGG | 0.614066 | 4_1:-83103052 | None:intergenic |
| AGAAGTGTAGTTCCTGGTGT+TGG | 0.622376 | 4_1:+83103139 | Msa0578550:CDS |
| AATGCTCAACTTGGTAACAA+TGG | 0.622719 | 4_1:+83103115 | Msa0578550:CDS |
| GAAGGACACTTACAGGTCCA+TGG | 0.625288 | 4_1:+83103871 | Msa0578550:CDS |
| GGCCTACACTGTTGAACTGG+AGG | 0.626943 | 4_1:+83103635 | Msa0578550:intron |
| GCATTGACATCTCTAACTGG+TGG | 0.627413 | 4_1:+83102614 | Msa0578550:CDS |
| TTTGTAACTCATCGAAAGTG+AGG | 0.627807 | 4_1:-83102505 | None:intergenic |
| ACTGGTGGAGGAGTAGGAGA+AGG | 0.628322 | 4_1:+83102629 | Msa0578550:CDS |
| TTAACTTGAATCACTCTCAA+CGG | 0.629011 | 4_1:+83103029 | Msa0578550:CDS |
| AAGGTTCATTGACATTGCCA+AGG | 0.629803 | 4_1:+83102687 | Msa0578550:CDS |
| ACAACTCACATAATCTACCA+TGG | 0.634836 | 4_1:-83103888 | None:intergenic |
| TCTTGCTAAAGTAGATCATG+TGG | 0.638981 | 4_1:-83102333 | None:intergenic |
| TTGTAACTCATCGAAAGTGA+GGG | 0.641219 | 4_1:-83102504 | None:intergenic |
| CAAACTTTAATTGGCCAGAG+AGG | 0.650703 | 4_1:-83104180 | None:intergenic |
| GAAACATAGACAGTCTAACA+GGG | 0.656176 | 4_1:-83104154 | None:intergenic |
| ACAACCAAATGGAAATAATG+GGG | 0.659967 | 4_1:+83102949 | Msa0578550:CDS |
| AAACCATGCATTCCAACACC+AGG | 0.661096 | 4_1:-83103151 | None:intergenic |
| GGAAATGCAGAAAAGTAAGG+AGG | 0.663949 | 4_1:+83103815 | Msa0578550:CDS |
| AATGAAGCCATTATGTCACA+AGG | 0.664340 | 4_1:+83103923 | Msa0578550:three_prime_UTR |
| CTTATGCAATCAACAGAGGG+AGG | 0.664407 | 4_1:+83103278 | Msa0578550:CDS |
| GGACCTAACAACCCAAATGG+TGG | 0.667509 | 4_1:+83102650 | Msa0578550:CDS |
| GTTCCTTATGCAATCAACAG+AGG | 0.671116 | 4_1:+83103274 | Msa0578550:CDS |
| AGCCTCCAGTTCAACAGTGT+AGG | 0.672463 | 4_1:-83103637 | None:intergenic |
| GAGTTACAAAGCACCATTGG+GGG | 0.707422 | 4_1:+83102518 | Msa0578550:CDS |
| AAAGTAAGGAGGATCTGGTG+CGG | 0.707722 | 4_1:+83103826 | Msa0578550:CDS |
| TGAGTTACAAAGCACCATTG+GGG | 0.710186 | 4_1:+83102517 | Msa0578550:CDS |
| AGAATAGAGAATCAGCTGCG+AGG | 0.715608 | 4_1:+83103353 | Msa0578550:CDS |
| AAAACTTAAGGAAGTAAACG+AGG | 0.734887 | 4_1:+83103668 | Msa0578550:CDS |
| AAACATAGACAGTCTAACAG+GGG | 0.747776 | 4_1:-83104153 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATAAATATCTTCATA+TGG | + | chr4_1:83100905-83100924 | Msa0578550:five_prime_UTR | 10.0% |
| !! | ACAATTTACTTAAAAATATT+TGG | - | chr4_1:83102008-83102027 | None:intergenic | 10.0% |
| !! | TAAATAATTAGAGACATAAA+AGG | - | chr4_1:83101117-83101136 | None:intergenic | 15.0% |
| !! | AAAAACGTTATATACAAATT+TGG | - | chr4_1:83101313-83101332 | None:intergenic | 15.0% |
| !!! | CTTATATCCATAATTTTTTT+AGG | - | chr4_1:83102051-83102070 | None:intergenic | 15.0% |
| !!! | GATTTATAAACTTCAAATTT+TGG | - | chr4_1:83102270-83102289 | None:intergenic | 15.0% |
| !! | AAGTTTATAAATCTAAATAC+AGG | + | chr4_1:83102277-83102296 | Msa0578550:intron | 15.0% |
| !! | AGTTTATAAATCTAAATACA+GGG | + | chr4_1:83102278-83102297 | Msa0578550:intron | 15.0% |
| !!! | AAATATTTGTTTCTTTTGAA+TGG | + | chr4_1:83103609-83103628 | Msa0578550:intron | 15.0% |
| !! | ATAAAATAAAATACTTGAGA+AGG | + | chr4_1:83103853-83103872 | Msa0578550:CDS | 15.0% |
| !! | TAAAAGGAAAGGAAAAAAAA+CGG | - | chr4_1:83101101-83101120 | None:intergenic | 20.0% |
| !!! | TCAATTTCTATATGTGTTTT+TGG | + | chr4_1:83101333-83101352 | Msa0578550:intron | 20.0% |
| !!! | CAATTTCTATATGTGTTTTT+GGG | + | chr4_1:83101334-83101353 | Msa0578550:intron | 20.0% |
| !! | ATTGTTTAAAGAATCAAAAG+AGG | - | chr4_1:83101640-83101659 | None:intergenic | 20.0% |
| !! | TGATATTATCTTGAAATAGA+TGG | - | chr4_1:83101904-83101923 | None:intergenic | 20.0% |
| !! | GTTTATAAATCTAAATACAG+GGG | + | chr4_1:83102279-83102298 | Msa0578550:intron | 20.0% |
| !! | AAAGACCAAATAATAATGAA+TGG | + | chr4_1:83102876-83102895 | Msa0578550:CDS | 20.0% |
| !! | CTAAACCATTCATTATTATT+TGG | - | chr4_1:83102884-83102903 | None:intergenic | 20.0% |
| !! | ATACATTATATGTGTATTGA+AGG | - | chr4_1:83103511-83103530 | None:intergenic | 20.0% |
| !! | AAATAGTTAATTACACAAGA+TGG | - | chr4_1:83104065-83104084 | None:intergenic | 20.0% |
| !! | GTAAAAACACAAACTTTAAT+TGG | - | chr4_1:83104192-83104211 | None:intergenic | 20.0% |
| ! | AATTAGAGACATAAAAGGAA+AGG | - | chr4_1:83101112-83101131 | None:intergenic | 25.0% |
| !!! | CAAAAAGCATTAAACAGATA+AGG | + | chr4_1:83101245-83101264 | Msa0578550:intron | 25.0% |
| !! | TGACTATACACTTTTACTAT+TGG | + | chr4_1:83101443-83101462 | Msa0578550:intron | 25.0% |
| !! | GACTATACACTTTTACTATT+GGG | + | chr4_1:83101444-83101463 | Msa0578550:intron | 25.0% |
| ! | TTACCATGATAAAAAAGACT+TGG | - | chr4_1:83101495-83101514 | None:intergenic | 25.0% |
| !! | CAATATAGTAAGTTTTCAAC+TGG | - | chr4_1:83101817-83101836 | None:intergenic | 25.0% |
| ! | CAGTTGAAAACTTACTATAT+TGG | + | chr4_1:83101815-83101834 | Msa0578550:intron | 25.0% |
| ! | ATTAAACTGTTTATCCAAAG+AGG | - | chr4_1:83101948-83101967 | None:intergenic | 25.0% |
| ! | GAGCTATCCTAAAAAAATTA+TGG | + | chr4_1:83102041-83102060 | Msa0578550:intron | 25.0% |
| !! | TGCTTTAAGTCTTTAAAAGT+GGG | + | chr4_1:83102399-83102418 | Msa0578550:five_prime_UTR | 25.0% |
| ! | ATGAACTCTTGAAAAACATA+TGG | + | chr4_1:83102573-83102592 | Msa0578550:CDS | 25.0% |
| ! | AACAACCAAATGGAAATAAT+GGG | + | chr4_1:83102948-83102967 | Msa0578550:CDS | 25.0% |
| !! | TGATTCAAGTTAATTGATGA+AGG | - | chr4_1:83103022-83103041 | None:intergenic | 25.0% |
| ! | ATAACAACATCATAAGCTTA+AGG | + | chr4_1:83103529-83103548 | Msa0578550:intron | 25.0% |
| ! | TATCAAAATGATGTAAGCAT+TGG | + | chr4_1:83103565-83103584 | Msa0578550:intron | 25.0% |
| !!! | TTTGTTTCTTTTGAATGGAA+AGG | + | chr4_1:83103614-83103633 | Msa0578550:intron | 25.0% |
| !! | GTAATTACAATTTTACAGAC+AGG | + | chr4_1:83103973-83103992 | Msa0578550:three_prime_UTR | 25.0% |
| ! | AGCTAATATGTATAGGTATT+AGG | + | chr4_1:83104001-83104020 | Msa0578550:three_prime_UTR | 25.0% |
| ! | CAAGTGTCTTTGAGTTTATA+AGG | - | chr4_1:83100944-83100963 | None:intergenic | 30.0% |
| CATTCGTGAATCTTATAGTT+AGG | + | chr4_1:83101363-83101382 | Msa0578550:intron | 30.0% | |
| GGCATAATAACAGATAAATG+AGG | + | chr4_1:83101384-83101403 | Msa0578550:intron | 30.0% | |
| !!! | ATGCCAAGTCTTTTTTATCA+TGG | + | chr4_1:83101489-83101508 | Msa0578550:intron | 30.0% |
| AAAGTTAGTTCAAACGGTAA+GGG | - | chr4_1:83101778-83101797 | None:intergenic | 30.0% | |
| AAAAGTTAGTTCAAACGGTA+AGG | - | chr4_1:83101779-83101798 | None:intergenic | 30.0% | |
| ! | TTACCGTTTGAACTAACTTT+TGG | + | chr4_1:83101778-83101797 | Msa0578550:intron | 30.0% |
| ! | TACCGTTTGAACTAACTTTT+GGG | + | chr4_1:83101779-83101798 | Msa0578550:intron | 30.0% |
| ATCCCAAAAGTTAGTTCAAA+CGG | - | chr4_1:83101784-83101803 | None:intergenic | 30.0% | |
| ! | CTGCTTTAAGTCTTTAAAAG+TGG | + | chr4_1:83102398-83102417 | Msa0578550:five_prime_UTR | 30.0% |
| ! | GCTTTAAGTCTTTAAAAGTG+GGG | + | chr4_1:83102400-83102419 | Msa0578550:five_prime_UTR | 30.0% |
| ! | AGATTTTGGATCAATGAACA+TGG | + | chr4_1:83102550-83102569 | Msa0578550:CDS | 30.0% |
| !! | AGAGAAAAGTTGATGAAGTT+TGG | + | chr4_1:83102720-83102739 | Msa0578550:CDS | 30.0% |
| !! | AAAAGTTGATGAAGTTTGGA+GGG | + | chr4_1:83102724-83102743 | Msa0578550:CDS | 30.0% |
| !! | TCAATTTGTTGAGCATGATT+AGG | - | chr4_1:83102857-83102876 | None:intergenic | 30.0% |
| AACAATAACACCAATCTACT+TGG | + | chr4_1:83102920-83102939 | Msa0578550:CDS | 30.0% | |
| CAACAACCAAATGGAAATAA+TGG | + | chr4_1:83102947-83102966 | Msa0578550:CDS | 30.0% | |
| ACAACCAAATGGAAATAATG+GGG | + | chr4_1:83102949-83102968 | Msa0578550:CDS | 30.0% | |
| ATATCCCCATTATTTCCATT+TGG | - | chr4_1:83102956-83102975 | None:intergenic | 30.0% | |
| ! | TTCAAGTTAATTGATGAAGG+AGG | - | chr4_1:83103019-83103038 | None:intergenic | 30.0% |
| ! | TTAACTTGAATCACTCTCAA+CGG | + | chr4_1:83103029-83103048 | Msa0578550:CDS | 30.0% |
| GCATTGTTTAGCAAATGAAT+AGG | - | chr4_1:83103100-83103119 | None:intergenic | 30.0% | |
| TTACGCTTTGTAATCAAATC+CGG | - | chr4_1:83103229-83103248 | None:intergenic | 30.0% | |
| CTTAACAAGCTTAATCATTC+TGG | - | chr4_1:83103473-83103492 | None:intergenic | 30.0% | |
| AAAACTTAAGGAAGTAAACG+AGG | + | chr4_1:83103668-83103687 | Msa0578550:CDS | 30.0% | |
| CATCAGTAATATGTTCACTA+AGG | + | chr4_1:83103740-83103759 | Msa0578550:intron | 30.0% | |
| TTACAGTTTCTGACTACATT+TGG | + | chr4_1:83103771-83103790 | Msa0578550:intron | 30.0% | |
| TATGGAAATGCAGAAAAGTA+AGG | + | chr4_1:83103812-83103831 | Msa0578550:CDS | 30.0% | |
| GGATAGTAGCTAATATGTAT+AGG | + | chr4_1:83103994-83104013 | Msa0578550:three_prime_UTR | 30.0% | |
| TCTGAACGATCTTCAGATTT+GGG | - | chr4_1:83100984-83101003 | None:intergenic | 35.0% | |
| TTAACTCACTCGTGTATGTT+CGG | - | chr4_1:83101048-83101067 | None:intergenic | 35.0% | |
| AAGGAAAGGAAAAAAAACGG+CGG | - | chr4_1:83101098-83101117 | None:intergenic | 35.0% | |
| TTTGATCTCACTTGTCTCTA+TGG | + | chr4_1:83101408-83101427 | Msa0578550:intron | 35.0% | |
| TTGATCTCACTTGTCTCTAT+GGG | + | chr4_1:83101409-83101428 | Msa0578550:intron | 35.0% | |
| ! | GAAGTTGTTTGCAGTTTGTT+CGG | + | chr4_1:83101706-83101725 | Msa0578550:intron | 35.0% |
| ! | TAGTAAGTTTTCAACTGGCT+TGG | - | chr4_1:83101812-83101831 | None:intergenic | 35.0% |
| TCAATAGAACTGTGAAGTTG+TGG | + | chr4_1:83101921-83101940 | Msa0578550:intron | 35.0% | |
| CAATAGAACTGTGAAGTTGT+GGG | + | chr4_1:83101922-83101941 | Msa0578550:intron | 35.0% | |
| AGAATGTTTGAGTGAGCTTA+TGG | - | chr4_1:83102109-83102128 | None:intergenic | 35.0% | |
| ! | TCATGTGGTATTTTCAGTCA+GGG | - | chr4_1:83102321-83102340 | None:intergenic | 35.0% |
| ! | ATCATGTGGTATTTTCAGTC+AGG | - | chr4_1:83102322-83102341 | None:intergenic | 35.0% |
| TCTTGCTAAAGTAGATCATG+TGG | - | chr4_1:83102336-83102355 | None:intergenic | 35.0% | |
| TTGTAACTCATCGAAAGTGA+GGG | - | chr4_1:83102507-83102526 | None:intergenic | 35.0% | |
| TTTGTAACTCATCGAAAGTG+AGG | - | chr4_1:83102508-83102527 | None:intergenic | 35.0% | |
| ! | ATGAGTTACAAAGCACCATT+GGG | + | chr4_1:83102516-83102535 | Msa0578550:CDS | 35.0% |
| TTTGCAAACTACCACCATTT+GGG | - | chr4_1:83102664-83102683 | None:intergenic | 35.0% | |
| ! | TTTTGCAAACTACCACCATT+TGG | - | chr4_1:83102665-83102684 | None:intergenic | 35.0% |
| !! | GAAAAGTTGATGAAGTTTGG+AGG | + | chr4_1:83102723-83102742 | Msa0578550:CDS | 35.0% |
| AGGGATTTGATGAAAGATAG+TGG | + | chr4_1:83102743-83102762 | Msa0578550:CDS | 35.0% | |
| AAAGTCACTTCACCTAATGT+TGG | - | chr4_1:83102791-83102810 | None:intergenic | 35.0% | |
| AACATTAGGTGAAGTGACTT+TGG | + | chr4_1:83102790-83102809 | Msa0578550:CDS | 35.0% | |
| TTGTTGAAAGCCAAGTAGAT+TGG | - | chr4_1:83102933-83102952 | None:intergenic | 35.0% | |
| TTAATTGATGAAGGAGGAAG+AGG | - | chr4_1:83103013-83103032 | None:intergenic | 35.0% | |
| AATGCTACAGTTGTAGGTTT+CGG | - | chr4_1:83103070-83103089 | None:intergenic | 35.0% | |
| GAAGAAAATGCTACAGTTGT+AGG | - | chr4_1:83103076-83103095 | None:intergenic | 35.0% | |
| TTGCTAAACAATGCTCAACT+TGG | + | chr4_1:83103106-83103125 | Msa0578550:CDS | 35.0% | |
| ! | AATGCTCAACTTGGTAACAA+TGG | + | chr4_1:83103115-83103134 | Msa0578550:CDS | 35.0% |
| TTCCTTATGCAATCAACAGA+GGG | + | chr4_1:83103275-83103294 | Msa0578550:CDS | 35.0% | |
| AAGTGTGTTCCTGTAGAAAA+AGG | + | chr4_1:83103301-83103320 | Msa0578550:CDS | 35.0% | |
| ! | CTTTCAACACCTTTTTCTAC+AGG | - | chr4_1:83103313-83103332 | None:intergenic | 35.0% |
| !! | CTGTAGAAAAAGGTGTTGAA+AGG | + | chr4_1:83103311-83103330 | Msa0578550:CDS | 35.0% |
| CGAGGAATTACAAAGAAAAC+AGG | + | chr4_1:83103686-83103705 | Msa0578550:CDS | 35.0% | |
| GACTACATTTGGTATGATAC+AGG | + | chr4_1:83103782-83103801 | Msa0578550:intron | 35.0% | |
| TATGATACAGGCAGAGTTTA+TGG | + | chr4_1:83103794-83103813 | Msa0578550:intron | 35.0% | |
| ACAACTCACATAATCTACCA+TGG | - | chr4_1:83103891-83103910 | None:intergenic | 35.0% | |
| AATGAAGCCATTATGTCACA+AGG | + | chr4_1:83103923-83103942 | Msa0578550:three_prime_UTR | 35.0% | |
| AAACATAGACAGTCTAACAG+GGG | - | chr4_1:83104156-83104175 | None:intergenic | 35.0% | |
| GAAACATAGACAGTCTAACA+GGG | - | chr4_1:83104157-83104176 | None:intergenic | 35.0% | |
| AGAAACATAGACAGTCTAAC+AGG | - | chr4_1:83104158-83104177 | None:intergenic | 35.0% | |
| ! | ATCTTCAGATTTGGGGTGTA+TGG | - | chr4_1:83100976-83100995 | None:intergenic | 40.0% |
| CTGAACGATCTTCAGATTTG+GGG | - | chr4_1:83100983-83101002 | None:intergenic | 40.0% | |
| GTCTGAACGATCTTCAGATT+TGG | - | chr4_1:83100985-83101004 | None:intergenic | 40.0% | |
| GAACATACACGAGTGAGTTA+AGG | + | chr4_1:83101047-83101066 | Msa0578550:five_prime_UTR | 40.0% | |
| TATTAGCGATCGTGTCACAT+CGG | + | chr4_1:83101191-83101210 | Msa0578550:intron | 40.0% | |
| TGATCTCACTTGTCTCTATG+GGG | + | chr4_1:83101410-83101429 | Msa0578550:intron | 40.0% | |
| !! | TATTGGGACTGCTGCTATTT+TGG | + | chr4_1:83101460-83101479 | Msa0578550:intron | 40.0% |
| TACAGGGGTAATCATTCCAA+AGG | + | chr4_1:83102294-83102313 | Msa0578550:intron | 40.0% | |
| ! | TATTTTCAGTCAGGGTCCTT+TGG | - | chr4_1:83102313-83102332 | None:intergenic | 40.0% |
| GGTCAAAATGAACTTCGCTT+GGG | + | chr4_1:83102421-83102440 | Msa0578550:exon | 40.0% | |
| CTTGCTAGATTAACACTTCC+AGG | - | chr4_1:83102467-83102486 | None:intergenic | 40.0% | |
| ! | TGAGGGAGTATATTGAAGAC+TGG | - | chr4_1:83102490-83102509 | None:intergenic | 40.0% |
| ! | GATGAGTTACAAAGCACCAT+TGG | + | chr4_1:83102515-83102534 | Msa0578550:CDS | 40.0% |
| ! | TGAGTTACAAAGCACCATTG+GGG | + | chr4_1:83102517-83102536 | Msa0578550:CDS | 40.0% |
| !! | CAAGCATTGACATCTCTAAC+TGG | + | chr4_1:83102611-83102630 | Msa0578550:CDS | 40.0% |
| ! | GGTGGTAGTTTGCAAAAACA+AGG | + | chr4_1:83102668-83102687 | Msa0578550:CDS | 40.0% |
| AAGGTTCATTGACATTGCCA+AGG | + | chr4_1:83102687-83102706 | Msa0578550:CDS | 40.0% | |
| TTTCTCTGACTAAGTGTCCT+TGG | - | chr4_1:83102707-83102726 | None:intergenic | 40.0% | |
| ! | CCTAATGTTGGTTGTCTTTG+AGG | - | chr4_1:83102779-83102798 | None:intergenic | 40.0% |
| CCTCAAAGACAACCAACATT+AGG | + | chr4_1:83102776-83102795 | Msa0578550:CDS | 40.0% | |
| ATTAGGTGAAGTGACTTTGG+AGG | + | chr4_1:83102793-83102812 | Msa0578550:CDS | 40.0% | |
| !! | AGTGACTTTGGAGGAGTTTT+TGG | + | chr4_1:83102802-83102821 | Msa0578550:CDS | 40.0% |
| ! | CTTGGCTTTCAACAACCAAA+TGG | + | chr4_1:83102938-83102957 | Msa0578550:CDS | 40.0% |
| ATGCTACAGTTGTAGGTTTC+GGG | - | chr4_1:83103069-83103088 | None:intergenic | 40.0% | |
| TTACTTCCTGGAGAAGTAAC+AGG | - | chr4_1:83103199-83103218 | None:intergenic | 40.0% | |
| GAACTGGTGACAGTAAAGTA+GGG | - | chr4_1:83103258-83103277 | None:intergenic | 40.0% | |
| ! | CTGTTGATTGCATAAGGAAC+TGG | - | chr4_1:83103274-83103293 | None:intergenic | 40.0% |
| GTTCCTTATGCAATCAACAG+AGG | + | chr4_1:83103274-83103293 | Msa0578550:CDS | 40.0% | |
| GGTCAGAGAAACAAAACAGA+TGG | - | chr4_1:83103452-83103471 | None:intergenic | 40.0% | |
| GGCTGAAGTTGCAAAACTTA+AGG | + | chr4_1:83103656-83103675 | Msa0578550:CDS | 40.0% | |
| GGAAATGCAGAAAAGTAAGG+AGG | + | chr4_1:83103815-83103834 | Msa0578550:CDS | 40.0% | |
| TACTTGAGAAGGACACTTAC+AGG | + | chr4_1:83103864-83103883 | Msa0578550:CDS | 40.0% | |
| !! | GGACAGGAGTATTGTATGTA+AGG | + | chr4_1:83103944-83103963 | Msa0578550:three_prime_UTR | 40.0% |
| CAAACTTTAATTGGCCAGAG+AGG | - | chr4_1:83104183-83104202 | None:intergenic | 40.0% | |
| ! | TTCAGATTTGGGGTGTATGG+TGG | - | chr4_1:83100973-83100992 | None:intergenic | 45.0% |
| TCACTCGTGTATGTTCGGTT+CGG | - | chr4_1:83101043-83101062 | None:intergenic | 45.0% | |
| ATTAGCGATCGTGTCACATC+GGG | + | chr4_1:83101192-83101211 | Msa0578550:intron | 45.0% | |
| TCCTGGGTAGTTAGATGTGT+TGG | + | chr4_1:83101748-83101767 | Msa0578550:intron | 45.0% | |
| TCCAACACATCTAACTACCC+AGG | - | chr4_1:83101752-83101771 | None:intergenic | 45.0% | |
| ACACTGGTGCCTATAACTTG+TGG | + | chr4_1:83102174-83102193 | Msa0578550:intron | 45.0% | |
| TTCCACACGCCACAAGTTAT+AGG | - | chr4_1:83102186-83102205 | None:intergenic | 45.0% | |
| TTGTGGCGTGTGGAATTTCA+AGG | + | chr4_1:83102191-83102210 | Msa0578550:intron | 45.0% | |
| GGGTCAAAATGAACTTCGCT+TGG | + | chr4_1:83102420-83102439 | Msa0578550:exon | 45.0% | |
| ! | GAGTTACAAAGCACCATTGG+GGG | + | chr4_1:83102518-83102537 | Msa0578550:CDS | 45.0% |
| ! | ATCTTTTCCAACTCCCCCAA+TGG | - | chr4_1:83102534-83102553 | None:intergenic | 45.0% |
| ! | GGGGGAGTTGGAAAAGATTT+TGG | + | chr4_1:83102536-83102555 | Msa0578550:CDS | 45.0% |
| ! | GCATTGACATCTCTAACTGG+TGG | + | chr4_1:83102614-83102633 | Msa0578550:CDS | 45.0% |
| TTGACATCTCTAACTGGTGG+AGG | + | chr4_1:83102617-83102636 | Msa0578550:CDS | 45.0% | |
| GAAGGACCTAACAACCCAAA+TGG | + | chr4_1:83102647-83102666 | Msa0578550:CDS | 45.0% | |
| !! | CTACCACCATTTGGGTTGTT+AGG | - | chr4_1:83102656-83102675 | None:intergenic | 45.0% |
| GGAGGAAGAGGAACATGTTT+AGG | - | chr4_1:83103001-83103020 | None:intergenic | 45.0% | |
| GTTGTAGGTTTCGGGAAAAG+TGG | - | chr4_1:83103061-83103080 | None:intergenic | 45.0% | |
| ! | AATGGCAGAAGTGTAGTTCC+TGG | + | chr4_1:83103133-83103152 | Msa0578550:CDS | 45.0% |
| ! | AGAAGTGTAGTTCCTGGTGT+TGG | + | chr4_1:83103139-83103158 | Msa0578550:CDS | 45.0% |
| AAACCATGCATTCCAACACC+AGG | - | chr4_1:83103154-83103173 | None:intergenic | 45.0% | |
| AACAGGAGCTGTGACATTTG+AGG | - | chr4_1:83103182-83103201 | None:intergenic | 45.0% | |
| TCCAGGAAGTAAAATGTCGC+CGG | + | chr4_1:83103207-83103226 | Msa0578550:CDS | 45.0% | |
| GGAACTGGTGACAGTAAAGT+AGG | - | chr4_1:83103259-83103278 | None:intergenic | 45.0% | |
| ! | CTCCCTCTGTTGATTGCATA+AGG | - | chr4_1:83103280-83103299 | None:intergenic | 45.0% |
| CTTATGCAATCAACAGAGGG+AGG | + | chr4_1:83103278-83103297 | Msa0578550:CDS | 45.0% | |
| AGAATAGAGAATCAGCTGCG+AGG | + | chr4_1:83103353-83103372 | Msa0578550:CDS | 45.0% | |
| AAAGGCCTACACTGTTGAAC+TGG | + | chr4_1:83103632-83103651 | Msa0578550:intron | 45.0% | |
| GCAGAAAAGTAAGGAGGATC+TGG | + | chr4_1:83103821-83103840 | Msa0578550:CDS | 45.0% | |
| AAAGTAAGGAGGATCTGGTG+CGG | + | chr4_1:83103826-83103845 | Msa0578550:CDS | 45.0% | |
| AGCCATTATGTCACAAGGAC+AGG | + | chr4_1:83103928-83103947 | Msa0578550:three_prime_UTR | 45.0% | |
| CTCCTGTCCTTGTGACATAA+TGG | - | chr4_1:83103933-83103952 | None:intergenic | 45.0% | |
| GTCTATGTTTCTCACCTCTC+TGG | + | chr4_1:83104166-83104185 | Msa0578550:three_prime_UTR | 45.0% | |
| TTAGCGATCGTGTCACATCG+GGG | + | chr4_1:83101193-83101212 | Msa0578550:intron | 50.0% | |
| TCTCACTTGTCTCTATGGGG+TGG | + | chr4_1:83101413-83101432 | Msa0578550:intron | 50.0% | |
| TTCGGAGTCTCACATTGCTC+AGG | + | chr4_1:83101724-83101743 | Msa0578550:intron | 50.0% | |
| TCTCACATTGCTCAGGTTCC+TGG | + | chr4_1:83101731-83101750 | Msa0578550:intron | 50.0% | |
| CTCACATTGCTCAGGTTCCT+GGG | + | chr4_1:83101732-83101751 | Msa0578550:intron | 50.0% | |
| TTCCCCTCCAATGCTGTTAG+AGG | + | chr4_1:83101852-83101871 | Msa0578550:intron | 50.0% | |
| TCCCCTCCAATGCTGTTAGA+GGG | + | chr4_1:83101853-83101872 | Msa0578550:intron | 50.0% | |
| TGTGAAGTTGTGGGCCTCTT+TGG | + | chr4_1:83101931-83101950 | Msa0578550:intron | 50.0% | |
| GTAGACACCTCAACACACAC+TGG | + | chr4_1:83102158-83102177 | Msa0578550:intron | 50.0% | |
| ATAGGCACCAGTGTGTGTTG+AGG | - | chr4_1:83102168-83102187 | None:intergenic | 50.0% | |
| ! | TGCCTATAACTTGTGGCGTG+TGG | + | chr4_1:83102181-83102200 | Msa0578550:intron | 50.0% |
| GCAATGAGTGTGAAGACACC+TGG | + | chr4_1:83102446-83102465 | Msa0578550:CDS | 50.0% | |
| TCTCTAACTGGTGGAGGAGT+AGG | + | chr4_1:83102623-83102642 | Msa0578550:CDS | 50.0% | |
| GGACCTAACAACCCAAATGG+TGG | + | chr4_1:83102650-83102669 | Msa0578550:CDS | 50.0% | |
| !!! | GAGGAGTTTTTGGTGAGAGC+TGG | + | chr4_1:83102812-83102831 | Msa0578550:CDS | 50.0% |
| GTAGGTTTCGGGAAAAGTGG+TGG | - | chr4_1:83103058-83103077 | None:intergenic | 50.0% | |
| ! | GTTCCTGGTGTTGGAATGCA+TGG | + | chr4_1:83103148-83103167 | Msa0578550:CDS | 50.0% |
| ! | ACAGCTCCTGTTACTTCTCC+AGG | + | chr4_1:83103190-83103209 | Msa0578550:CDS | 50.0% |
| ! | TCCGGCGACATTTTACTTCC+TGG | - | chr4_1:83103211-83103230 | None:intergenic | 50.0% |
| AGCCTCCAGTTCAACAGTGT+AGG | - | chr4_1:83103640-83103659 | None:intergenic | 50.0% | |
| GAAGGACACTTACAGGTCCA+TGG | + | chr4_1:83103871-83103890 | Msa0578550:CDS | 50.0% | |
| ! | CCCCTCTAACAGCATTGGAG+GGG | - | chr4_1:83101857-83101876 | None:intergenic | 55.0% |
| CCCCTCCAATGCTGTTAGAG+GGG | + | chr4_1:83101854-83101873 | Msa0578550:intron | 55.0% | |
| ! | CCCCCTCTAACAGCATTGGA+GGG | - | chr4_1:83101858-83101877 | None:intergenic | 55.0% |
| CCCTCCAATGCTGTTAGAGG+GGG | + | chr4_1:83101855-83101874 | Msa0578550:intron | 55.0% | |
| ! | ACCCCCTCTAACAGCATTGG+AGG | - | chr4_1:83101859-83101878 | None:intergenic | 55.0% |
| GCAACCCCCTCTAACAGCAT+TGG | - | chr4_1:83101862-83101881 | None:intergenic | 55.0% | |
| ! | CAAAGCACCATTGGGGGAGT+TGG | + | chr4_1:83102524-83102543 | Msa0578550:CDS | 55.0% |
| ACTGGTGGAGGAGTAGGAGA+AGG | + | chr4_1:83102629-83102648 | Msa0578550:CDS | 55.0% | |
| GGTTTCGGGAAAAGTGGTGG+CGG | - | chr4_1:83103055-83103074 | None:intergenic | 55.0% | |
| GAGAATCAGCTGCGAGGTCA+CGG | + | chr4_1:83103359-83103378 | Msa0578550:CDS | 55.0% | |
| AGAATCAGCTGCGAGGTCAC+GGG | + | chr4_1:83103360-83103379 | Msa0578550:CDS | 55.0% | |
| GGCCTACACTGTTGAACTGG+AGG | + | chr4_1:83103635-83103654 | Msa0578550:intron | 55.0% | |
| ! | AGACAGTCTAACAGGGGCAC+AGG | - | chr4_1:83104150-83104169 | None:intergenic | 55.0% |
| ! | AGTCTAACAGGGGCACAGGC+AGG | - | chr4_1:83104146-83104165 | None:intergenic | 60.0% |
| GAGGTCACGGGCTCGCAAAC+AGG | + | chr4_1:83103372-83103391 | Msa0578550:CDS | 65.0% | |
| ! | TAACAGGGGCACAGGCAGGC+TGG | - | chr4_1:83104142-83104161 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 83100876 | 83104224 | 83100876 | ID=Msa0578550;Name=Msa0578550 |
| chr4_1 | mRNA | 83100876 | 83104224 | 83100876 | ID=Msa0578550-mRNA-1;Parent=Msa0578550;Name=Msa0578550-mRNA-1;_AED=0.06;_eAED=0.06;_QI=302|1|1|1|0.5|0.4|5|328|376 |
| chr4_1 | exon | 83100876 | 83100934 | 83100876 | ID=Msa0578550-mRNA-1:exon:30252;Parent=Msa0578550-mRNA-1 |
| chr4_1 | exon | 83100955 | 83101068 | 83100955 | ID=Msa0578550-mRNA-1:exon:30253;Parent=Msa0578550-mRNA-1 |
| chr4_1 | exon | 83102299 | 83103393 | 83102299 | ID=Msa0578550-mRNA-1:exon:30254;Parent=Msa0578550-mRNA-1 |
| chr4_1 | exon | 83103636 | 83103707 | 83103636 | ID=Msa0578550-mRNA-1:exon:30255;Parent=Msa0578550-mRNA-1 |
| chr4_1 | exon | 83103804 | 83104224 | 83103804 | ID=Msa0578550-mRNA-1:exon:30256;Parent=Msa0578550-mRNA-1 |
| chr4_1 | five_prime_UTR | 83100876 | 83100934 | 83100876 | ID=Msa0578550-mRNA-1:five_prime_utr;Parent=Msa0578550-mRNA-1 |
| chr4_1 | five_prime_UTR | 83100955 | 83101068 | 83100955 | ID=Msa0578550-mRNA-1:five_prime_utr;Parent=Msa0578550-mRNA-1 |
| chr4_1 | five_prime_UTR | 83102299 | 83102427 | 83102299 | ID=Msa0578550-mRNA-1:five_prime_utr;Parent=Msa0578550-mRNA-1 |
| chr4_1 | CDS | 83102428 | 83103393 | 83102428 | ID=Msa0578550-mRNA-1:cds;Parent=Msa0578550-mRNA-1 |
| chr4_1 | CDS | 83103636 | 83103707 | 83103636 | ID=Msa0578550-mRNA-1:cds;Parent=Msa0578550-mRNA-1 |
| chr4_1 | CDS | 83103804 | 83103896 | 83103804 | ID=Msa0578550-mRNA-1:cds;Parent=Msa0578550-mRNA-1 |
| chr4_1 | three_prime_UTR | 83103897 | 83104224 | 83103897 | ID=Msa0578550-mRNA-1:three_prime_utr;Parent=Msa0578550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
