AlfalfaGEDB | Msa0580570

M. sativa cultivar zhongmu-4 / Msa0580570

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0021700 GO:0022622 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042995 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071695 GO:0071704 GO:0071944 GO:0090406 GO:0090558 GO:0090627 GO:0099402 GO:0120025 GO:0140096 GO:1901564 GO:1905392
PFAM: PF08263.15

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0580570	XP_003629772.1	95.779	687	20	2	1	678	1	687	0.0	1345

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0580570	sp\|C0LGQ4\|MDIS2_ARATH	49.408	676	280	17	26	678	22	658	0.0	594

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0580570	G7LJE3	95.779	687	20	2	1	678	1	687	0.0	1345

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0580570	Msa0618110	0.865655	5.045879e-65	-8.615850e-47
Msa0580570	Msa0701150	0.910694	1.406846e-82	-8.615850e-47

Showing 1 to 2 of 2 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0580570	MtrunA17_Chr8g0379101	95.779	687	20	2	1	678	1	687	0.0	1345
Msa0580570	MtrunA17_Chr2g0283991	64.941	425	144	3	258	678	2	425	0.0	577
Msa0580570	MtrunA17_Chr3g0113951	41.369	672	335	14	10	678	121	736	6.60e-152	458
Msa0580570	MtrunA17_Chr1g0193121	53.593	334	150	4	344	676	279	608	9.97e-119	368
Msa0580570	MtrunA17_Chr1g0193121	36.634	202	114	5	18	205	15	216	6.00e-29	122
Msa0580570	MtrunA17_Chr8g0386631	30.935	695	383	12	14	674	8	639	2.01e-102	327
Msa0580570	MtrunA17_Chr5g0397651	30.303	693	365	19	31	676	26	647	2.45e-80	268
Msa0580570	MtrunA17_Chr2g0283981	66.321	193	63	1	1	193	3	193	2.60e-75	240
Msa0580570	MtrunA17_Chr4g0035464	25.490	612	353	20	75	667	433	960	3.90e-40	158
Msa0580570	MtrunA17_Chr4g0035464	28.750	240	151	7	15	248	7	232	2.47e-13	73.6

Showing 1 to 10 of 612 entries

Previous1 2 3 4 5…62Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0580570	AT5G45840.1	48.080	703	323	16	1	678	1	686	0.0	595
Msa0580570	AT4G18640.1	49.408	676	280	17	26	678	22	658	0.0	594
Msa0580570	AT5G45840.2	47.202	697	300	15	1	678	1	648	0.0	572
Msa0580570	AT2G40270.2	42.506	407	225	5	272	678	67	464	5.88e-107	333
Msa0580570	AT2G40270.1	42.506	407	225	5	272	678	74	471	8.52e-107	333
Msa0580570	AT3G56050.2	49.254	335	159	6	346	676	152	479	1.31e-104	328
Msa0580570	AT3G56050.1	49.254	335	159	6	346	676	152	479	1.31e-104	328
Msa0580570	AT5G58540.3	48.204	334	156	6	345	678	5	321	5.28e-97	302
Msa0580570	AT5G58540.2	46.974	347	167	6	332	678	132	461	3.48e-96	305
Msa0580570	AT5G58540.1	46.974	347	167	6	332	678	135	464	3.84e-96	305

Showing 1 to 10 of 580 entries

Previous1 2 3 4 5…58Next

Find 208 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATCGGTTTCAGGACCT+TGG	0.474337	4_1:-85738722	None:intergenic
AAAGTTCTTATGGTTAACAC+GGG	0.637163	4_1:-85738148	None:intergenic
AAATATATTATTATTATCTT+CGG	0.411966	4_1:+85737252	Msa0580570:CDS
AAATGAACAATGTGGAGGGG+GGG	0.494866	4_1:-85734060	None:intergenic
AACAAGGTCACCTTGTGAAC+TGG	0.363670	4_1:+85738802	Msa0580570:CDS
AACACCATCATCCTTGTGAA+TGG	0.535451	4_1:-85738204	None:intergenic
AACAGATGACTTTGCTGCTA+AGG	0.454473	4_1:+85738529	Msa0580570:CDS
AACAGCAATCTCAACTCCAC+TGG	0.536170	4_1:-85737940	None:intergenic
AACATCCTGCCAATTTCTGC+AGG	0.475149	4_1:-85735682	None:intergenic
AACATCGGTTTCAGGACCTT+GGG	0.379636	4_1:-85738721	None:intergenic

Showing 1 to 10 of 208 entries

Previous1 2 3 4 5…21Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGGCAGCAAAAATTACA+AGG	-	chr4_1:85734010-85734029	None:intergenic	30.0%
GCTTGAATGAAAGAGAAAAA+AGG	-	chr4_1:85734027-85734046	None:intergenic	30.0%
CTTCAATTACAATCCAACAA+AGG	+	chr4_1:85734083-85734102	Msa0580570:five_prime_UTR	30.0%
GAATAGAATTACCATGCAAA+AGG	-	chr4_1:85734135-85734154	None:intergenic	30.0%
AGCATAACAATGAAGAAACA+TGG	-	chr4_1:85734333-85734352	None:intergenic	30.0%
ACTAAGCTTGGTTATGTATT+TGG	+	chr4_1:85734492-85734511	Msa0580570:five_prime_UTR	30.0%
CAAAAATAAATGCAGCAGTT+GGG	-	chr4_1:85734580-85734599	None:intergenic	30.0%
GCAAAACTTGTATGTTACAA+TGG	-	chr4_1:85734607-85734626	None:intergenic	30.0%
TTAGTTACCTTCATCTCAAA+AGG	+	chr4_1:85734635-85734654	Msa0580570:five_prime_UTR	30.0%
TCATTGTACAAAATTTGGCA+AGG	-	chr4_1:85734687-85734706	None:intergenic	30.0%

Showing 1 to 10 of 371 entries

Previous1 2 3 4 5…38Next

Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	85733970	85739141	85733970	ID=Msa0580570;Name=Msa0580570
chr4_1	mRNA	85733970	85739141	85733970	ID=Msa0580570-mRNA-1;Parent=Msa0580570;Name=Msa0580570-mRNA-1;_AED=0.11;_eAED=0.11;_QI=510\|0.85\|0.73\|1\|0.71\|0.53\|15\|0\|678
chr4_1	exon	85733970	85734142	85733970	ID=Msa0580570-mRNA-1:exon:31504;Parent=Msa0580570-mRNA-1
chr4_1	exon	85734454	85734890	85734454	ID=Msa0580570-mRNA-1:exon:31505;Parent=Msa0580570-mRNA-1
chr4_1	exon	85735012	85735144	85735012	ID=Msa0580570-mRNA-1:exon:31506;Parent=Msa0580570-mRNA-1
chr4_1	exon	85735328	85735399	85735328	ID=Msa0580570-mRNA-1:exon:31507;Parent=Msa0580570-mRNA-1
chr4_1	exon	85735576	85735719	85735576	ID=Msa0580570-mRNA-1:exon:31508;Parent=Msa0580570-mRNA-1
chr4_1	exon	85735796	85735927	85735796	ID=Msa0580570-mRNA-1:exon:31509;Parent=Msa0580570-mRNA-1
chr4_1	exon	85736610	85736711	85736610	ID=Msa0580570-mRNA-1:exon:31510;Parent=Msa0580570-mRNA-1
chr4_1	exon	85736809	85736870	85736809	ID=Msa0580570-mRNA-1:exon:31511;Parent=Msa0580570-mRNA-1
chr4_1	exon	85736962	85737210	85736962	ID=Msa0580570-mRNA-1:exon:31512;Parent=Msa0580570-mRNA-1
chr4_1	exon	85737226	85737396	85737226	ID=Msa0580570-mRNA-1:exon:31513;Parent=Msa0580570-mRNA-1
chr4_1	exon	85737838	85738028	85737838	ID=Msa0580570-mRNA-1:exon:31514;Parent=Msa0580570-mRNA-1
chr4_1	exon	85738135	85738267	85738135	ID=Msa0580570-mRNA-1:exon:31515;Parent=Msa0580570-mRNA-1
chr4_1	exon	85738393	85738550	85738393	ID=Msa0580570-mRNA-1:exon:31516;Parent=Msa0580570-mRNA-1
chr4_1	exon	85738636	85738824	85738636	ID=Msa0580570-mRNA-1:exon:31517;Parent=Msa0580570-mRNA-1
chr4_1	exon	85738944	85739141	85738944	ID=Msa0580570-mRNA-1:exon:31518;Parent=Msa0580570-mRNA-1
chr4_1	five_prime_UTR	85733970	85734142	85733970	ID=Msa0580570-mRNA-1:five_prime_utr;Parent=Msa0580570-mRNA-1
chr4_1	five_prime_UTR	85734454	85734790	85734454	ID=Msa0580570-mRNA-1:five_prime_utr;Parent=Msa0580570-mRNA-1
chr4_1	CDS	85734791	85734890	85734791	ID=Msa0580570-mRNA-1:cds;Parent=Msa0580570-mRNA-1
chr4_1	CDS	85735012	85735144	85735012	ID=Msa0580570-mRNA-1:cds;Parent=Msa0580570-mRNA-1
chr4_1	CDS	85735328	85735399	85735328	ID=Msa0580570-mRNA-1:cds;Parent=Msa0580570-mRNA-1
chr4_1	CDS	85735576	85735719	85735576	ID=Msa0580570-mRNA-1:cds;Parent=Msa0580570-mRNA-1
chr4_1	CDS	85735796	85735927	85735796	ID=Msa0580570-mRNA-1:cds;Parent=Msa0580570-mRNA-1
chr4_1	CDS	85736610	85736711	85736610	ID=Msa0580570-mRNA-1:cds;Parent=Msa0580570-mRNA-1
chr4_1	CDS	85736809	85736870	85736809	ID=Msa0580570-mRNA-1:cds;Parent=Msa0580570-mRNA-1
chr4_1	CDS	85736962	85737210	85736962	ID=Msa0580570-mRNA-1:cds;Parent=Msa0580570-mRNA-1
chr4_1	CDS	85737226	85737396	85737226	ID=Msa0580570-mRNA-1:cds;Parent=Msa0580570-mRNA-1
chr4_1	CDS	85737838	85738028	85737838	ID=Msa0580570-mRNA-1:cds;Parent=Msa0580570-mRNA-1
chr4_1	CDS	85738135	85738267	85738135	ID=Msa0580570-mRNA-1:cds;Parent=Msa0580570-mRNA-1
chr4_1	CDS	85738393	85738550	85738393	ID=Msa0580570-mRNA-1:cds;Parent=Msa0580570-mRNA-1
chr4_1	CDS	85738636	85738824	85738636	ID=Msa0580570-mRNA-1:cds;Parent=Msa0580570-mRNA-1
chr4_1	CDS	85738944	85739141	85738944	ID=Msa0580570-mRNA-1:cds;Parent=Msa0580570-mRNA-1

Gene Sequence

>Msa0580570

ATGGAATGCATATGGGATCGGTTTGGATTATGGCTCAGAATTTATATTGGATTGATTTGTATCTGGGGAATTCGACTGTGCTGGTCTCTGAATGATGAAGGAATTGCTTTGTGGGAATTTCGGGTAAGAATAATTTCTGATCCGTATGGTGCTCTGCTAAATTGGAATCCAAATGATTCCAACCCTTGCAAGTGGAAGGGAGTTCATTGTGTTGATGGTAAAGTGCAAATCCTGGACCTAAATGGGCAATCATTGGAAGGGACATTGACTCCTCATCTTGGGAAACTTAATCACTTAAAATCTCTTGTGCTATGCAAGAACAATTTTTCTGGCACCATTCCCAAGGAACTTGGAGATCTAGACAATTTGAAGTTGTTGGATTTAAGGGAGAATAACTTGACAGGAAATATCCCTGCAGAAATTGGCAGGATGTTGTTGTTAGAGCAATTGTTGGTTCATGACAATAAAATTGAAGGTGGTGATTCTCAAGAGCTCGGGAACATGGGATTGCCTTCCAAATCACTATTTAGTGACAACTATTCATCACCTCTGACAAGTTTATTTCAGTGCAAAAATAGAAACATCTGGTATAGAGATCTCAAGCAATGGAACGAGGCAAATTCTTTGGCTGTTCCAATTAAAGGAGCACTTAAAAGATATCTTAAGGCCATGGCGCTGCAACTGTTCAAGCTTGGAAAGGCCGCTTCTCATGGCTATGAGGAGAATTACTGGGGCAATCTTCCTAGTTCTGACGAGTCGGAGTTTGGCCCAGATGTATCAAATCTAATCAGTTCTGCACGTCGTAAGTTGCTCGATCAGTCCAATAACCTTGCAGCTGCACCTTATAGCGGTGGACCTGCTATACAGATCAGTATTATTCCAATTTCAATAAGTAGTGGATCTTTCCCGGCTGTGCCAGATGCCCATAAGAAACAAAATCAATCTTCTGCGCCACTGCATTCAGCTACCGGTTCTCCACATGATAATCAAATAACTAATGGTGCTCCAAGTAAACTCTGGAAATATATTATTATTATCTTCGGTGTGATTTTCTTGGCCATTTTTAGCGTGATCATGTTTTGCATCTTGCGAAAACGAGCTGCAAAAGTAATAAAGCCATGGAAGACAGGAATAAGTGGACAGTTACAGAAGGCATTTGTAACAGGGGTCCCCAAGTTGAATCGAGCAGAGTTGGAGACAGCCTGTGAAGATTTCAGCAATATCATTAACAGTTTTGAAAAATGCACCATATATAAAGGAACACTGTCCAGTGGAGTTGAGATTGCTGTTGATTCTACTGTTGTTACTTCTTCCGAAGATTGGTCAAAGAACATGGAGATGGCCTATAGGAGAAAGATTGCTTCTCTGTCCCGTGTTAACCATAAGAACTTTACCAATCTTATTGGTTACTGTGACGAAGAAGAACCATTCACAAGGATGATGGTGTTGGAGTATGCTCCAAATGGAAGCTTATTCGAGCATCTACATGTTAAGGAAATTGAACATCTTGATTGGAGTGCAAGGATGAGGGTTATCATGGGCACAGCTTATTGTCTTCAGTACATGCACCATGATCTCAATCCACCAGTCTCTCATTCCAACCTTAATTCAGTTGCAATATTATTAACAGATGACTTTGCTGCTAAGGTATCAGAGATCAGTTTTGGAAGTAATGGATTATCACCAGCCAGCACAGTTGGCGATGAATCAAAGAAATCTGAGTTGCCACCCCCCCAAGGTCCTGAAACCGATGTTTATAACTTTGGAATATTATTGCTTGAAATCATTTCTGGGAAACTACCATACTCTGAAGAACAAGGTCACCTTGTGAACTGGGCTGCTGAGCACTTGAATGATAAGCGAAACATTGGCTGTTTGATCGATCCCACGCTCGAGTCCTTCAAAGACAACGAACTTGATGTGATATGTGAGGTGATAAAAGAATGTGTTCAATCTGATCAGAGGTTAAGGCCAACAATGAAGGAAGTAACTCACAAATTGAGGGAAGTGCTTTCTATATCACCTGATCAAGCA

Protein sequence

>Msa0580570

MECIWDRFGLWLRIYIGLICIWGIRLCWSLNDEGIALWEFRVRIISDPYGALLNWNPNDSNPCKWKGVHCVDGKVQILDLNGQSLEGTLTPHLGKLNHLKSLVLCKNNFSGTIPKELGDLDNLKLLDLRENNLTGNIPAEIGRMLLLEQLLVHDNKIEGGDSQELGNMGLPSKSLFSDNYSSPLTSLFQCKNRNIWYRDLKQWNEANSLAVPIKGALKRYLKAMALQLFKLGKAASHGYEENYWGNLPSSDESEFGPDVSNLISSARRKLLDQSNNLAAAPYSGGPAIQISIIPISISSGSFPAVPDAHKKQNQSSAPLHSATGSPHDNQITNGAPSKLWKYIIIIFGVIFLAIFSVIMFCILRKRAAKVIKPWKTGISGQLQKAFVTGVPKLNRAELETACEDFSNIINSFEKCTIYKGTLSSGVEIAVDSTVVTSSEDWSKNMEMAYRRKIASLSRVNHKNFTNLIGYCDEEEPFTRMMVLEYAPNGSLFEHLHVKEIEHLDWSARMRVIMGTAYCLQYMHHDLNPPVSHSNLNSVAILLTDDFAAKVSEISFGSNGLSPASTVGDESKKSELPPPQGPETDVYNFGILLLEIISGKLPYSEEQGHLVNWAAEHLNDKRNIGCLIDPTLESFKDNELDVICEVIKECVQSDQRLRPTMKEVTHKLREVLSISPDQA