AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0581450

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0581450 MtrunA17_Chr4g0072751 96.866 351 9 2 1 350 1 350 0.0 683
Msa0581450 MtrunA17_Chr5g0400821 87.313 134 17 0 1 134 1 134 1.73e-84 258
Msa0581450 MtrunA17_Chr1g0152011 72.832 173 39 1 1 165 1 173 5.05e-84 258
Msa0581450 MtrunA17_Chr3g0135311 68.156 179 49 3 1 173 1 177 2.74e-80 248
Msa0581450 MtrunA17_Chr4g0028311 83.193 119 20 0 1 119 1 119 4.32e-73 229
Msa0581450 MtrunA17_Chr4g0054391 88.182 110 13 0 1 110 1 110 2.68e-71 224
Msa0581450 MtrunA17_Chr7g0264641 79.661 118 24 0 1 118 1 118 1.65e-70 221
Msa0581450 MtrunA17_Chr2g0327351 82.540 126 22 0 1 126 1 126 1.76e-70 223
Msa0581450 MtrunA17_Chr1g0151941 80.508 118 23 0 1 118 1 118 5.68e-70 219
Msa0581450 MtrunA17_Chr6g0487491 71.654 127 28 1 1 119 1 127 7.57e-63 201
Msa0581450 MtrunA17_Chr6g0452271 64.407 118 41 1 1 118 1 117 1.43e-53 179
Msa0581450 MtrunA17_Chr7g0217221 53.659 164 64 4 1 164 1 152 3.46e-52 174
Msa0581450 MtrunA17_Chr3g0103281 63.866 119 42 1 1 119 1 118 9.96e-51 171
Msa0581450 MtrunA17_Chr4g0039971 63.559 118 42 1 1 118 2 118 1.41e-50 172
Msa0581450 MtrunA17_Chr4g0060721 49.451 182 76 6 1 179 2 170 6.16e-50 170
Msa0581450 MtrunA17_Chr5g0410961 49.457 184 81 5 1 175 1 181 1.42e-49 169
Msa0581450 MtrunA17_Chr7g0261281 57.353 136 56 2 1 136 1 134 1.63e-49 167
Msa0581450 MtrunA17_Chr1g0203411 62.393 117 43 1 1 117 1 116 1.84e-49 167
Msa0581450 MtrunA17_Chr3g0115821 61.017 118 45 1 1 118 1 117 2.53e-49 169
Msa0581450 MtrunA17_Chr8g0346561 61.538 117 44 1 1 117 1 116 2.59e-49 167
Msa0581450 MtrunA17_Chr6g0453471 62.393 117 43 1 1 117 1 116 4.45e-49 168
Msa0581450 MtrunA17_Chr1g0187761 64.957 117 40 1 1 117 1 116 5.55e-49 165
Msa0581450 MtrunA17_Chr4g0042671 45.894 207 90 5 1 186 1 206 5.88e-49 169
Msa0581450 MtrunA17_Chr7g0275911 60.684 117 45 1 1 117 1 116 6.85e-49 165
Msa0581450 MtrunA17_Chr4g0037141 49.697 165 63 3 1 163 1 147 9.44e-49 165
Msa0581450 MtrunA17_Chr1g0167691 62.712 118 43 1 1 118 1 117 1.24e-48 164
Msa0581450 MtrunA17_Chr7g0217741 62.393 117 43 1 1 117 1 116 1.35e-48 166
Msa0581450 MtrunA17_Chr2g0323411 62.712 118 43 1 1 118 1 117 2.75e-48 165
Msa0581450 MtrunA17_Chr1g0167661 51.299 154 72 2 1 152 1 153 3.08e-48 163
Msa0581450 MtrunA17_Chr7g0274581 46.893 177 83 4 1 173 1 170 4.00e-48 161
Msa0581450 MtrunA17_Chr8g0349261 60.504 119 46 1 1 118 1 119 5.52e-48 164
Msa0581450 MtrunA17_Chr3g0092401 48.876 178 77 5 1 176 2 167 2.58e-47 162
Msa0581450 MtrunA17_Chr3g0131121 58.333 120 49 1 1 120 1 119 6.49e-47 161
Msa0581450 MtrunA17_Chr7g0254411 61.538 117 44 1 1 117 1 116 8.05e-47 162
Msa0581450 MtrunA17_Chr4g0048511 60.504 119 45 2 1 118 1 118 1.47e-46 162
Msa0581450 MtrunA17_Chr4g0057031 60.169 118 46 1 1 118 1 117 1.91e-46 159
Msa0581450 MtrunA17_Chr6g0453211 51.744 172 72 4 1 169 1 164 3.75e-46 159
Msa0581450 MtrunA17_Chr7g0228891 58.974 117 47 1 1 117 1 116 5.65e-46 157
Msa0581450 MtrunA17_Chr4g0070611 52.985 134 62 1 1 134 1 133 8.12e-46 158
Msa0581450 MtrunA17_Chr8g0385321 59.167 120 48 1 1 120 1 119 1.47e-45 158
Msa0581450 MtrunA17_Chr4g0070641 52.985 134 62 1 1 134 1 133 1.98e-45 153
Msa0581450 MtrunA17_Chr5g0395281 46.995 183 87 4 1 175 1 181 5.49e-45 156
Msa0581450 MtrunA17_Chr4g0068061 57.265 117 49 1 1 117 1 116 8.13e-45 156
Msa0581450 MtrunA17_Chr4g0058631 58.475 118 48 1 1 118 1 117 8.15e-45 157
Msa0581450 MtrunA17_Chr8g0387421 58.120 117 48 1 1 117 1 116 1.11e-44 155
Msa0581450 MtrunA17_Chr5g0435101 52.800 125 58 1 3 127 2 125 1.77e-44 152
Msa0581450 MtrunA17_Chr1g0193371 58.974 117 47 1 1 117 1 116 1.77e-44 156
Msa0581450 MtrunA17_Chr3g0110351 58.974 117 47 1 1 117 1 116 1.89e-44 155
Msa0581450 MtrunA17_Chr1g0193801 58.333 120 49 1 1 120 1 119 2.26e-44 157
Msa0581450 MtrunA17_Chr2g0323351 52.555 137 62 2 1 137 1 134 3.04e-44 152
Msa0581450 MtrunA17_Chr2g0311221 59.459 111 44 1 2 112 4 113 4.51e-44 154
Msa0581450 MtrunA17_Chr5g0434571 58.974 117 47 1 1 117 37 152 4.63e-44 155
Msa0581450 MtrunA17_Chr7g0270891 59.167 120 48 1 1 120 1 119 5.06e-44 155
Msa0581450 MtrunA17_Chr3g0121241 56.140 114 49 1 5 118 35 147 1.43e-43 152
Msa0581450 MtrunA17_Chr4g0022931 57.627 118 48 2 1 117 1 117 1.90e-43 151
Msa0581450 MtrunA17_Chr3g0117091 56.780 118 50 1 1 118 1 117 2.28e-43 153
Msa0581450 MtrunA17_Chr5g0397231 59.459 111 44 1 1 111 1 110 7.36e-43 151
Msa0581450 MtrunA17_Chr4g0022901 56.303 119 50 2 1 118 1 118 1.42e-42 149
Msa0581450 MtrunA17_Chr8g0342541 55.085 118 52 1 1 118 1 117 4.40e-42 149
Msa0581450 MtrunA17_Chr2g0330041 55.462 119 52 1 1 119 1 118 4.66e-42 150
Msa0581450 MtrunA17_Chr2g0309911 34.516 310 164 9 6 304 5 286 4.73e-42 149
Msa0581450 MtrunA17_Chr4g0022891 58.772 114 46 1 1 114 1 113 4.93e-42 146
Msa0581450 MtrunA17_Chr1g0211161 55.172 116 51 1 3 118 4 118 1.01e-41 145
Msa0581450 MtrunA17_Chr1g0194951 53.846 117 53 1 1 117 1 116 1.57e-41 149
Msa0581450 MtrunA17_Chr8g0342521 55.085 118 52 1 1 118 1 117 1.65e-41 148
Msa0581450 MtrunA17_Chr8g0342481 52.941 119 56 0 1 119 1 119 2.19e-41 149
Msa0581450 MtrunA17_Chr7g0269831 55.039 129 57 1 1 129 1 128 3.52e-41 147
Msa0581450 MtrunA17_Chr7g0271241 60.000 110 43 1 1 110 1 109 3.80e-41 148
Msa0581450 MtrunA17_Chr4g0022911 53.782 119 53 2 1 118 1 118 1.01e-40 144
Msa0581450 MtrunA17_Chr4g0022881 55.652 115 50 1 1 115 1 114 2.77e-39 139
Msa0581450 MtrunA17_Chr4g0044421 50.376 133 62 3 3 134 2 131 5.08e-39 137
Msa0581450 MtrunA17_Chr8g0354661 58.095 105 43 1 12 116 37 140 2.94e-38 143
Msa0581450 MtrunA17_Chr3g0099131 56.075 107 46 1 10 116 39 144 4.13e-37 140
Msa0581450 MtrunA17_Chr3g0088461 55.046 109 48 1 9 117 19 126 5.24e-37 136
Msa0581450 MtrunA17_Chr3g0080861 57.143 105 44 1 12 116 37 140 6.97e-37 139
Msa0581450 MtrunA17_Chr5g0434931 55.046 109 48 1 12 120 35 142 1.47e-36 133
Msa0581450 MtrunA17_Chr2g0328771 54.717 106 47 1 12 117 20 124 2.05e-36 134
Msa0581450 MtrunA17_Chr1g0203441 52.542 118 54 2 1 117 1 117 2.31e-36 132
Msa0581450 MtrunA17_Chr8g0343831 54.701 117 48 2 1 117 1 112 2.97e-36 132
Msa0581450 MtrunA17_Chr5g0417821 54.206 107 48 1 12 118 7 112 3.12e-36 132
Msa0581450 MtrunA17_Chr4g0032401 54.717 106 47 1 12 117 17 121 1.28e-35 132
Msa0581450 MtrunA17_Chr6g0450101 52.101 119 54 2 1 117 1 118 1.34e-35 129
Msa0581450 MtrunA17_Chr5g0434911 51.754 114 54 1 7 120 16 128 1.53e-35 130
Msa0581450 MtrunA17_Chr7g0228231 53.846 117 49 2 11 127 13 124 1.87e-35 128
Msa0581450 MtrunA17_Chr1g0194301 55.046 109 48 1 8 116 29 136 2.05e-35 130
Msa0581450 MtrunA17_Chr6g0470971 53.097 113 52 1 4 116 6 117 6.49e-35 129
Msa0581450 MtrunA17_Chr7g0240821 59.406 101 40 1 17 117 6 105 9.52e-35 127
Msa0581450 MtrunA17_Chr5g0440781 53.271 107 48 2 10 115 10 115 2.38e-34 125
Msa0581450 MtrunA17_Chr7g0228991 54.128 109 49 1 12 120 29 136 2.74e-34 127
Msa0581450 MtrunA17_Chr7g0220341 53.509 114 50 2 12 123 25 137 3.56e-34 127
Msa0581450 MtrunA17_Chr4g0055981 53.704 108 49 1 9 116 52 158 4.24e-34 125
Msa0581450 MtrunA17_Chr1g0186061 54.808 104 46 1 13 116 21 123 5.36e-34 125
Msa0581450 MtrunA17_Chr1g0168661 55.769 104 45 1 13 116 22 124 5.55e-34 125
Msa0581450 MtrunA17_Chr1g0209661 55.238 105 46 1 12 116 27 130 5.74e-34 127
Msa0581450 MtrunA17_Chr1g0194291 53.704 108 49 1 9 116 18 124 1.84e-33 124
Msa0581450 MtrunA17_Chr1g0192411 52.294 109 51 1 8 116 8 115 1.88e-33 128
Msa0581450 MtrunA17_Chr2g0322521 54.630 108 48 1 9 116 26 132 1.90e-33 127
Msa0581450 MtrunA17_Chr5g0440761 53.271 107 48 2 10 115 10 115 1.94e-33 124
Msa0581450 MtrunA17_Chr5g0441141 53.271 107 48 2 10 115 10 115 2.14e-33 124
Msa0581450 MtrunA17_Chr4g0042611 58.427 89 36 1 1 89 1 88 3.20e-33 118
Msa0581450 MtrunA17_Chr8g0360111 56.863 102 43 1 12 113 25 125 3.63e-33 124
Msa0581450 MtrunA17_Chr1g0180391 53.704 108 49 1 10 117 17 123 4.36e-33 122
Msa0581450 MtrunA17_Chr4g0068921 55.556 108 47 1 8 115 20 126 1.31e-32 120
Msa0581450 MtrunA17_Chr1g0154031 51.429 105 50 1 12 116 76 179 3.19e-32 124
Msa0581450 MtrunA17_Chr5g0434841 51.376 109 52 1 12 120 20 127 4.63e-32 122
Msa0581450 MtrunA17_Chr5g0434831 50.459 109 53 1 12 120 7 114 4.91e-32 119
Msa0581450 MtrunA17_Chr2g0327821 40.268 149 86 2 12 158 6 153 1.07e-31 119
Msa0581450 MtrunA17_Chr5g0441131 51.402 107 50 2 10 115 7 112 1.47e-31 117
Msa0581450 MtrunA17_Chr7g0247131 66.667 72 24 0 46 117 11 82 3.40e-30 116
Msa0581450 MtrunA17_Chr2g0293911 53.704 108 49 1 8 115 20 126 6.47e-30 117
Msa0581450 MtrunA17_Chr2g0294811 53.763 93 42 1 1 93 1 92 8.68e-30 110
Msa0581450 MtrunA17_Chr8g0334881 48.624 109 54 2 8 115 6 113 3.03e-28 112
Msa0581450 MtrunA17_Chr3g0099141 53.409 88 40 1 8 95 36 122 9.12e-28 105
Msa0581450 MtrunA17_Chr4g0030881 43.697 119 59 2 13 124 8 125 1.27e-27 108
Msa0581450 MtrunA17_Chr4g0008551 48.214 112 56 2 14 125 38 147 2.32e-27 110
Msa0581450 MtrunA17_Chr5g0401731 50.485 103 49 2 14 116 15 115 3.22e-27 109
Msa0581450 MtrunA17_Chr4g0053431 50.485 103 49 2 14 116 5 105 9.12e-27 107
Msa0581450 MtrunA17_Chr8g0342511 52.874 87 40 1 1 87 1 86 9.32e-27 102
Msa0581450 MtrunA17_Chr8g0342461 51.111 90 44 0 1 90 1 90 1.00e-26 103
Msa0581450 MtrunA17_Chr8g0342471 51.111 90 44 0 1 90 1 90 1.27e-26 102
Msa0581450 MtrunA17_Chr6g0454921 49.515 103 50 2 14 116 15 115 1.97e-26 104
Msa0581450 MtrunA17_Chr8g0342531 51.111 90 43 1 1 90 1 89 5.75e-26 102
Msa0581450 MtrunA17_Chr4g0013361 45.872 109 57 2 8 115 6 113 6.39e-26 105
Msa0581450 MtrunA17_Chr3g0133601 47.573 103 52 2 14 116 37 137 3.51e-25 101
Msa0581450 MtrunA17_Chr5g0434901 62.857 70 26 0 45 114 5 74 9.75e-25 97.1
Msa0581450 MtrunA17_Chr2g0323321 47.312 93 47 2 1 93 1 91 3.92e-24 95.5
Msa0581450 MtrunA17_Chr3g0093811 56.627 83 33 1 38 117 4 86 5.42e-24 99.4
Msa0581450 MtrunA17_Chr5g0395221 49.438 89 44 1 1 89 1 88 9.64e-24 93.6
Msa0581450 MtrunA17_Chr6g0480581 30.814 172 108 4 14 185 4 164 2.89e-22 94.0
Msa0581450 MtrunA17_Chr7g0229101 57.971 69 29 0 46 114 5 73 4.82e-22 92.8
Msa0581450 MtrunA17_Chr5g0429661 39.535 129 75 3 14 142 122 247 5.08e-22 95.5
Msa0581450 MtrunA17_Chr5g0437321 48.000 100 50 2 14 113 19 116 7.06e-22 94.0
Msa0581450 MtrunA17_Chr7g0229131 53.425 73 34 0 46 118 5 77 9.08e-22 90.9
Msa0581450 MtrunA17_Chr4g0058991 43.363 113 61 3 9 121 204 313 2.56e-21 94.7
Msa0581450 MtrunA17_Chr5g0417621 41.964 112 60 3 14 125 134 240 7.37e-21 93.2
Msa0581450 MtrunA17_Chr3g0117511 42.982 114 62 3 9 122 178 288 8.98e-21 92.8
Msa0581450 MtrunA17_Chr3g0125801 37.342 158 82 5 8 150 10 165 5.99e-20 88.6
Msa0581450 MtrunA17_Chr6g0460661 39.815 108 60 3 14 118 16 121 6.63e-20 85.5
Msa0581450 MtrunA17_Chr7g0238651 36.957 138 76 4 17 152 10 138 8.92e-20 89.4
Msa0581450 MtrunA17_Chr5g0425591 48.276 87 43 2 11 96 8 93 1.30e-19 82.4
Msa0581450 MtrunA17_Chr4g0042501 34.615 130 81 3 14 143 105 230 3.32e-19 88.2
Msa0581450 MtrunA17_Chr3g0139671 43.269 104 57 2 14 117 85 186 5.43e-19 88.6
Msa0581450 MtrunA17_Chr7g0238631 42.748 131 62 4 14 136 113 238 5.55e-19 88.2
Msa0581450 MtrunA17_Chr6g0453751 41.935 93 46 2 12 96 20 112 1.18e-18 81.3
Msa0581450 MtrunA17_Chr6g0460671 40.777 103 59 2 14 116 99 199 4.33e-18 84.3
Msa0581450 MtrunA17_Chr7g0228531 36.364 121 74 3 11 131 217 334 2.08e-17 82.8
Msa0581450 MtrunA17_Chr1g0157731 41.346 104 59 2 14 117 91 192 2.77e-17 83.2
Msa0581450 MtrunA17_Chr5g0397841 44.000 100 54 2 11 110 107 204 5.64e-17 81.6
Msa0581450 MtrunA17_Chr7g0254261 41.748 103 58 2 14 116 89 189 1.24e-16 80.1
Msa0581450 MtrunA17_Chr7g0228401 35.211 142 68 4 11 130 252 391 1.38e-16 80.9
Msa0581450 MtrunA17_Chr1g0177901 43.158 95 52 1 34 128 12 104 2.23e-16 77.0
Msa0581450 MtrunA17_Chr5g0416341 39.000 100 59 2 17 116 29 126 1.20e-15 77.8
Msa0581450 MtrunA17_Chr8g0362231 41.000 100 57 2 17 116 25 122 2.00e-15 77.0
Msa0581450 MtrunA17_Chr7g0233061 36.134 119 71 3 10 128 176 289 3.77e-15 75.9
Msa0581450 MtrunA17_Chr7g0247141 55.319 47 21 0 1 47 1 47 1.76e-14 67.4
Msa0581450 MtrunA17_Chr7g0228481 33.562 146 86 5 11 149 217 358 1.80e-14 73.9
Msa0581450 MtrunA17_Chr1g0193901 52.542 59 26 2 12 69 11 68 3.66e-13 65.5
Msa0581450 MtrunA17_Chr1g0193891 52.542 59 26 2 12 69 11 68 3.66e-13 65.5
Msa0581450 MtrunA17_Chr1g0193871 52.542 59 26 2 12 69 11 68 3.66e-13 65.5
Msa0581450 MtrunA17_Chr1g0193881 52.542 59 26 2 12 69 11 68 3.66e-13 65.5
Msa0581450 MtrunA17_Chr5g0434871 54.545 44 20 0 75 118 2 45 2.60e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0581450 AT5G57620.1 63.900 241 74 4 1 239 1 230 1.21e-99 298
Msa0581450 AT3G49690.1 90.244 123 12 0 1 123 1 123 1.23e-81 251
Msa0581450 AT5G65790.1 89.431 123 13 0 1 123 1 123 2.75e-80 250
Msa0581450 AT4G37780.1 83.871 124 20 0 1 124 1 124 2.65e-76 237
Msa0581450 AT2G36890.1 84.034 119 19 0 1 119 1 119 8.25e-72 226
Msa0581450 AT2G36890.2 84.034 119 19 0 1 119 42 160 1.12e-71 226
Msa0581450 AT5G23000.1 78.814 118 25 0 1 118 1 118 1.34e-66 213
Msa0581450 AT5G56110.1 65.546 119 40 1 1 119 1 118 8.63e-53 177
Msa0581450 AT2G31180.1 58.741 143 52 2 1 143 1 136 3.62e-52 173
Msa0581450 AT3G01140.2 64.407 118 41 1 1 118 1 117 2.03e-51 174
Msa0581450 AT3G47600.1 50.000 192 87 5 1 184 1 191 6.15e-51 172
Msa0581450 AT5G15310.4 62.712 118 43 1 1 118 1 117 2.62e-50 168
Msa0581450 AT3G61250.1 62.712 118 43 1 1 118 1 117 4.19e-50 169
Msa0581450 AT3G23250.1 63.248 117 42 1 1 117 1 116 4.49e-50 169
Msa0581450 AT5G15310.1 62.712 118 43 1 1 118 1 117 9.55e-50 169
Msa0581450 AT5G15310.2 62.712 118 43 1 1 118 1 117 1.14e-49 169
Msa0581450 AT1G22640.1 57.143 133 55 2 1 133 1 131 2.59e-49 166
Msa0581450 AT5G62470.2 48.538 171 87 1 1 171 1 170 3.52e-49 169
Msa0581450 AT3G02940.2 61.017 118 45 1 1 118 1 117 4.10e-49 167
Msa0581450 AT1G74650.1 56.643 143 57 2 1 143 1 138 5.14e-49 167
Msa0581450 AT5G16770.4 62.712 118 43 1 1 118 1 117 5.25e-49 167
Msa0581450 AT5G16770.3 62.712 118 43 1 1 118 1 117 5.25e-49 167
Msa0581450 AT3G02940.1 61.017 118 45 1 1 118 1 117 8.78e-49 167
Msa0581450 AT3G02940.3 61.017 118 45 1 1 118 1 117 8.78e-49 167
Msa0581450 AT3G62610.1 56.818 132 56 1 1 132 1 131 1.07e-48 167
Msa0581450 AT5G16770.1 62.712 118 43 1 1 118 1 117 1.55e-48 166
Msa0581450 AT5G16770.2 62.712 118 43 1 1 118 1 117 1.55e-48 166
Msa0581450 AT2G16720.1 60.000 120 47 1 1 120 1 119 1.85e-48 164
Msa0581450 AT4G21440.1 48.276 174 83 3 1 168 1 173 3.27e-48 166
Msa0581450 AT4G28110.1 61.017 118 45 1 1 118 1 117 3.56e-48 164
Msa0581450 AT3G01140.1 63.478 115 41 1 4 118 47 160 3.70e-48 167
Msa0581450 AT1G16490.1 61.207 116 44 1 2 117 4 118 5.37e-48 163
Msa0581450 AT1G79180.1 62.931 116 42 1 2 117 4 118 5.40e-48 164
Msa0581450 AT1G35515.1 52.555 137 64 1 1 137 1 136 5.40e-48 161
Msa0581450 AT4G05100.1 62.185 119 43 2 1 118 1 118 5.75e-48 165
Msa0581450 AT1G06180.1 60.800 125 48 1 1 125 1 124 7.08e-48 162
Msa0581450 AT3G28910.1 64.103 117 41 1 1 117 1 116 7.79e-48 164
Msa0581450 AT4G38620.1 59.322 118 47 1 1 118 1 117 1.05e-47 163
Msa0581450 AT4G09460.1 60.169 118 46 1 1 118 1 117 1.26e-47 161
Msa0581450 AT1G08810.1 62.393 117 43 1 1 117 1 116 1.29e-47 162
Msa0581450 AT5G62470.1 48.538 171 86 2 1 171 1 169 3.53e-47 163
Msa0581450 AT4G34990.1 47.904 167 83 2 1 167 1 163 3.61e-47 161
Msa0581450 AT5G49330.1 50.658 152 67 2 1 152 1 144 6.42e-47 162
Msa0581450 AT4G17785.2 61.345 119 44 2 1 118 1 118 1.23e-46 162
Msa0581450 AT4G17785.1 61.345 119 44 2 1 118 1 118 1.89e-46 162
Msa0581450 AT1G56160.1 59.483 116 46 1 2 117 4 118 1.96e-46 160
Msa0581450 AT3G28470.1 61.261 111 42 1 1 111 1 110 2.01e-46 160
Msa0581450 AT5G61420.2 61.017 118 45 1 1 118 1 117 2.41e-46 162
Msa0581450 AT4G12350.1 61.017 118 45 1 1 118 1 117 2.61e-46 159
Msa0581450 AT5G07690.1 60.833 120 46 1 1 120 1 119 4.18e-46 160
Msa0581450 AT1G34670.1 60.169 118 46 1 1 118 1 117 5.09e-46 160
Msa0581450 AT5G65230.1 59.322 118 47 1 1 118 1 117 9.08e-46 159
Msa0581450 AT5G60890.1 59.829 117 46 1 1 117 1 116 1.18e-45 158
Msa0581450 AT4G22680.1 59.322 118 47 1 1 118 1 117 1.67e-45 156
Msa0581450 AT3G13540.1 58.261 115 47 1 4 118 15 128 1.68e-45 156
Msa0581450 AT2G47460.1 58.120 117 48 1 1 117 1 116 1.81e-45 159
Msa0581450 AT1G57560.2 51.333 150 69 2 1 150 1 146 3.16e-45 156
Msa0581450 AT4G01680.3 59.829 117 46 1 1 117 1 116 4.06e-45 155
Msa0581450 AT5G10280.1 57.627 118 49 1 1 118 1 117 5.64e-45 157
Msa0581450 AT3G12820.1 59.322 118 47 1 3 120 5 121 6.40e-45 154
Msa0581450 AT1G18570.1 61.157 121 45 2 1 120 1 120 6.69e-45 157
Msa0581450 AT4G01680.1 59.829 117 46 1 1 117 1 116 1.29e-44 156
Msa0581450 AT1G63910.1 58.120 117 48 1 1 117 1 116 2.87e-44 156
Msa0581450 AT5G26660.1 46.023 176 89 3 1 171 1 175 3.07e-44 155
Msa0581450 AT5G16600.1 59.829 117 46 1 1 117 1 116 4.71e-44 154
Msa0581450 AT1G57560.1 50.667 150 73 1 1 150 1 149 6.07e-44 154
Msa0581450 AT5G62320.1 50.360 139 63 1 2 134 3 141 1.20e-43 151
Msa0581450 AT5G54230.1 59.322 118 47 1 1 118 1 117 1.74e-43 153
Msa0581450 AT1G66230.1 58.120 117 48 1 1 117 1 116 2.22e-43 151
Msa0581450 AT5G07700.1 57.627 118 49 1 1 118 1 117 6.52e-43 152
Msa0581450 AT5G07700.2 57.627 118 49 1 1 118 1 117 6.52e-43 152
Msa0581450 AT1G09540.1 58.120 117 48 1 1 117 1 116 7.22e-43 152
Msa0581450 AT5G14340.1 51.429 140 64 3 1 137 13 151 8.00e-43 150
Msa0581450 AT3G13890.2 54.237 118 53 1 1 118 1 117 9.24e-42 149
Msa0581450 AT1G74080.1 55.000 120 53 1 1 120 1 119 1.25e-41 148
Msa0581450 AT4G01680.2 54.264 129 46 2 1 117 1 128 1.58e-41 148
Msa0581450 AT3G12720.1 50.388 129 63 1 6 134 16 143 1.90e-41 147
Msa0581450 AT1G79180.2 48.993 149 42 2 2 117 4 151 2.55e-41 147
Msa0581450 AT5G14750.1 54.310 116 52 1 13 128 17 131 5.37e-40 140
Msa0581450 AT5G52600.1 56.034 116 50 1 9 124 9 123 8.18e-40 140
Msa0581450 AT3G27920.1 43.503 177 88 3 13 189 15 179 3.60e-39 139
Msa0581450 AT3G13890.1 50.394 127 53 2 1 118 1 126 9.21e-39 142
Msa0581450 AT5G40330.1 57.143 105 44 1 13 117 13 116 2.02e-38 137
Msa0581450 AT1G74430.1 54.167 120 54 1 1 120 1 119 4.73e-38 137
Msa0581450 AT5G55020.1 58.491 106 43 1 12 117 26 130 5.72e-38 142
Msa0581450 AT2G32460.2 57.143 105 44 1 12 116 6 109 3.50e-37 139
Msa0581450 AT2G32460.1 57.143 105 44 1 12 116 18 121 4.07e-37 139
Msa0581450 AT4G26930.1 57.692 104 43 1 12 115 19 121 5.22e-37 137
Msa0581450 AT5G12870.1 55.660 106 46 1 12 117 18 122 7.80e-37 134
Msa0581450 AT5G06100.1 55.046 109 48 1 8 116 28 135 3.22e-36 136
Msa0581450 AT3G27810.1 55.963 109 47 1 9 117 17 124 4.77e-36 130
Msa0581450 AT1G18710.1 51.282 117 56 1 1 117 1 116 4.78e-36 132
Msa0581450 AT1G25340.1 47.059 153 74 2 10 156 16 167 6.72e-36 132
Msa0581450 AT5G35550.1 53.211 109 50 1 9 117 11 118 8.06e-36 131
Msa0581450 AT3G01530.1 51.818 110 52 1 8 117 21 129 8.97e-36 129
Msa0581450 AT5G06100.5 55.046 109 48 1 8 116 28 135 9.10e-36 136
Msa0581450 AT5G06100.2 55.046 109 48 1 8 116 28 135 9.10e-36 136
Msa0581450 AT5G06100.3 55.046 109 48 1 8 116 28 135 9.10e-36 136
Msa0581450 AT5G06100.4 55.046 109 48 1 8 116 28 135 9.10e-36 136
Msa0581450 AT3G08500.1 55.046 109 48 1 9 117 27 134 1.17e-35 133
Msa0581450 AT3G11440.2 50.926 108 52 1 9 116 38 144 3.43e-35 134
Msa0581450 AT5G40350.1 54.128 109 49 1 10 118 15 122 3.74e-35 128
Msa0581450 AT3G11440.3 50.926 108 52 1 9 116 38 144 1.32e-34 133
Msa0581450 AT3G11440.4 50.926 108 52 1 9 116 38 144 1.32e-34 133
Msa0581450 AT3G11440.1 50.926 108 52 1 9 116 38 144 1.32e-34 133
Msa0581450 AT5G52260.1 54.783 115 51 1 9 123 9 122 5.59e-34 126
Msa0581450 AT2G47190.1 48.413 126 62 2 8 133 16 138 1.16e-33 125
Msa0581450 AT2G26960.1 43.243 148 81 3 9 154 17 163 1.65e-33 129
Msa0581450 AT4G25560.1 54.717 106 47 1 13 118 11 115 2.59e-33 125
Msa0581450 AT1G48000.1 55.963 109 45 2 12 118 32 139 2.68e-33 124
Msa0581450 AT3G48920.1 48.333 120 61 1 9 128 15 133 2.97e-33 124
Msa0581450 AT4G13480.1 55.769 104 45 1 13 116 7 109 3.40e-33 124
Msa0581450 AT3G24310.1 55.769 104 45 1 13 116 19 121 5.84e-33 124
Msa0581450 AT1G66370.1 50.000 116 53 2 1 116 1 111 6.25e-33 123
Msa0581450 AT1G68320.1 54.286 105 47 1 12 116 19 122 3.27e-32 122
Msa0581450 AT3G06490.1 56.481 108 46 1 8 115 15 121 1.22e-31 121
Msa0581450 AT3G30210.1 48.739 119 60 1 12 130 27 144 2.11e-31 120
Msa0581450 AT1G25340.2 45.098 153 72 3 10 156 16 162 3.55e-31 119
Msa0581450 AT1G25340.3 45.098 153 72 3 10 156 16 162 4.79e-31 119
Msa0581450 AT1G66380.1 53.333 105 48 1 12 116 8 111 6.17e-31 114
Msa0581450 AT5G14750.3 55.556 90 37 1 39 128 11 97 3.77e-30 113
Msa0581450 AT5G26660.2 62.338 77 29 0 44 120 12 88 3.92e-30 117
Msa0581450 AT1G66390.1 52.381 105 49 1 12 116 8 111 9.94e-30 114
Msa0581450 AT1G56650.1 52.381 105 49 1 12 116 8 111 1.79e-29 114
Msa0581450 AT5G49620.1 53.704 108 49 1 8 115 22 128 1.88e-29 115
Msa0581450 AT3G46130.1 46.364 110 58 1 13 122 10 118 5.99e-29 112
Msa0581450 AT5G59780.3 46.364 110 58 1 13 122 9 117 6.05e-29 112
Msa0581450 AT3G47600.2 46.622 148 71 4 45 184 38 185 6.36e-29 114
Msa0581450 AT3G53200.1 51.429 105 50 1 12 116 9 112 2.85e-28 110
Msa0581450 AT2G26950.1 43.750 112 61 2 9 120 13 122 2.97e-27 110
Msa0581450 AT3G27810.2 63.014 73 27 0 45 117 3 75 4.78e-27 105
Msa0581450 AT1G18960.1 46.154 104 52 2 14 117 10 109 6.42e-27 108
Msa0581450 AT5G35550.2 59.494 79 32 0 39 117 43 121 1.13e-26 107
Msa0581450 AT3G60460.1 46.296 108 56 2 9 115 8 114 2.05e-26 107
Msa0581450 AT2G23290.1 51.456 103 48 2 14 116 13 113 3.04e-26 106
Msa0581450 AT3G12820.2 61.111 72 28 0 49 120 2 73 3.48e-26 103
Msa0581450 AT5G40350.2 59.459 74 30 0 45 118 4 77 5.45e-26 102
Msa0581450 AT5G49620.2 47.541 122 49 2 8 115 22 142 6.19e-26 106
Msa0581450 AT3G53200.2 60.274 73 29 0 44 116 7 79 9.61e-25 100
Msa0581450 AT3G27785.1 47.222 108 55 2 9 116 184 289 1.18e-24 104
Msa0581450 AT5G67300.1 46.364 110 57 2 10 119 2 109 1.25e-24 102
Msa0581450 AT5G59780.2 54.430 79 36 0 44 122 18 96 1.43e-24 100
Msa0581450 AT3G50060.1 47.273 110 56 2 10 119 2 109 2.27e-24 101
Msa0581450 AT3G46130.4 54.430 79 36 0 44 122 18 96 2.40e-24 100
Msa0581450 AT4G37260.1 47.573 103 52 2 14 116 13 113 3.26e-24 101
Msa0581450 AT1G66380.3 61.111 72 28 0 45 116 7 78 6.58e-24 95.1
Msa0581450 AT5G40360.1 32.447 188 103 4 12 181 156 337 8.60e-24 100
Msa0581450 AT3G46130.3 54.545 77 35 0 46 122 10 86 9.19e-24 98.2
Msa0581450 AT3G09230.1 38.298 141 79 3 14 154 55 187 1.24e-23 100
Msa0581450 AT2G39880.1 47.573 103 52 2 14 116 50 150 5.28e-23 99.0
Msa0581450 AT3G55730.1 48.544 103 51 2 14 116 56 156 7.87e-23 99.0
Msa0581450 AT1G69560.1 41.525 118 64 3 9 126 102 214 1.14e-22 97.4
Msa0581450 AT1G69560.2 41.525 118 64 3 9 126 118 230 1.65e-22 97.1
Msa0581450 AT5G58850.1 39.683 126 73 3 11 136 102 224 2.86e-22 97.4
Msa0581450 AT1G17950.1 44.660 103 55 2 14 116 5 105 3.09e-22 94.7
Msa0581450 AT4G18770.1 42.982 114 62 3 9 122 212 322 3.20e-22 97.4
Msa0581450 AT2G25230.1 43.363 113 61 3 9 121 21 130 5.81e-22 93.6
Msa0581450 AT1G22640.3 56.000 75 32 1 59 133 1 74 8.01e-22 92.0
Msa0581450 AT1G26780.1 41.748 103 58 2 14 116 98 198 1.66e-20 90.5
Msa0581450 AT1G26780.2 41.748 103 58 2 14 116 98 198 3.54e-20 90.9
Msa0581450 AT5G17800.1 39.091 110 65 2 14 123 93 200 5.58e-20 89.7
Msa0581450 AT5G14750.4 52.857 70 33 0 59 128 1 70 7.05e-20 85.1
Msa0581450 AT5G14750.2 52.857 70 33 0 59 128 1 70 7.05e-20 85.1
Msa0581450 AT4G33450.1 40.171 117 63 3 9 125 14 123 9.42e-20 87.8
Msa0581450 AT5G11050.1 34.395 157 90 4 11 167 102 245 1.17e-19 89.7
Msa0581450 AT3G23250.2 62.712 59 22 0 59 117 1 59 1.49e-19 86.7
Msa0581450 AT1G73410.1 45.631 103 54 2 14 116 6 106 1.65e-19 87.0
Msa0581450 AT3G09370.2 44.660 103 55 2 14 116 135 235 2.01e-19 89.7
Msa0581450 AT3G09370.2 27.778 180 115 4 14 180 83 260 1.08e-11 66.2
Msa0581450 AT3G09370.1 44.660 103 55 2 14 116 130 230 2.32e-19 89.4
Msa0581450 AT3G09370.1 27.778 180 115 4 14 180 78 255 1.20e-11 66.2
Msa0581450 AT3G09370.3 44.660 103 55 2 14 116 143 243 2.76e-19 89.4
Msa0581450 AT3G09370.3 27.778 180 115 4 14 180 91 268 1.00e-11 66.2
Msa0581450 AT1G73410.2 45.631 103 54 2 14 116 6 106 4.46e-19 84.7
Msa0581450 AT1G71030.2 50.746 67 33 0 52 118 5 71 5.09e-19 84.0
Msa0581450 AT1G71030.1 50.746 67 33 0 52 118 19 85 5.90e-19 84.3
Msa0581450 AT5G02320.3 42.308 104 58 2 14 117 67 168 1.57e-18 87.0
Msa0581450 AT5G02320.3 29.070 172 107 4 14 172 15 184 6.76e-13 70.1
Msa0581450 AT5G02320.1 42.308 104 58 2 14 117 127 228 1.74e-18 87.0
Msa0581450 AT5G02320.1 29.070 172 107 4 14 172 75 244 8.16e-13 69.7
Msa0581450 AT5G02320.2 42.308 104 58 2 14 117 127 228 1.74e-18 87.0
Msa0581450 AT5G02320.2 29.070 172 107 4 14 172 75 244 8.16e-13 69.7
Msa0581450 AT2G37630.1 36.957 138 75 4 17 152 7 134 2.70e-18 85.5
Msa0581450 AT4G32730.1 42.308 104 58 2 14 117 87 188 5.72e-18 85.9
Msa0581450 AT4G32730.5 42.308 104 58 2 14 117 87 188 6.84e-18 85.5
Msa0581450 AT4G32730.4 42.308 104 58 2 14 117 87 188 6.84e-18 85.5
Msa0581450 AT4G32730.3 42.308 104 58 2 14 117 87 188 6.84e-18 85.5
Msa0581450 AT4G32730.2 42.308 104 58 2 14 117 87 188 6.84e-18 85.5
Msa0581450 AT2G02820.3 42.000 100 56 2 17 116 33 130 8.04e-18 83.6
Msa0581450 AT2G02820.1 42.000 100 56 2 17 116 33 130 1.75e-17 83.6
Msa0581450 AT5G40430.1 36.449 107 65 2 9 115 49 152 2.20e-17 81.3
Msa0581450 AT2G02820.2 42.000 100 56 2 17 116 33 130 2.72e-17 83.2
Msa0581450 AT5G11510.2 40.385 104 60 2 14 117 81 182 3.56e-17 83.2
Msa0581450 AT5G11510.5 40.385 104 60 2 14 117 81 182 3.84e-17 83.2
Msa0581450 AT5G11510.3 40.385 104 60 2 14 117 81 182 3.93e-17 83.2
Msa0581450 AT5G11510.1 40.385 104 60 2 14 117 81 182 3.93e-17 83.2
Msa0581450 AT5G11510.4 40.385 104 60 2 14 117 81 182 3.93e-17 83.2
Msa0581450 AT3G29020.1 32.000 150 95 4 14 163 65 207 6.08e-17 79.3
Msa0581450 AT3G29020.2 31.655 139 82 3 14 141 67 203 1.06e-16 80.1
Msa0581450 AT1G14350.2 36.585 123 76 2 17 139 28 148 1.27e-16 80.9
Msa0581450 AT1G14350.1 36.585 123 76 2 17 139 28 148 1.27e-16 80.9
Msa0581450 AT1G66380.2 43.902 82 45 1 12 93 8 88 2.86e-16 74.3
Msa0581450 AT4G00540.2 36.111 144 69 4 11 136 100 238 7.73e-16 78.6
Msa0581450 AT4G00540.1 36.111 144 69 4 11 136 98 236 1.24e-15 78.2
Msa0581450 AT5G39700.1 35.345 116 70 3 9 124 51 161 1.96e-13 68.6
Msa0581450 AT1G22640.2 46.032 63 27 2 71 133 4 59 9.67e-11 60.8
Msa0581450 AT1G74650.3 50.000 66 29 1 78 143 1 62 9.68e-11 62.0

Find 58 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACCACAGGTTGATCTTT+TGG 0.226254 4_1:+86824370 Msa0581450:CDS
AATCCACCATGTTTGATATT+AGG 0.227994 4_1:-86823795 None:intergenic
TCAGTTACCTTCAATGCTTC+TGG 0.240988 4_1:+86824425 Msa0581450:CDS
ATGTCATTGTCTGTTCTTCC+AGG 0.285868 4_1:-86824032 None:intergenic
TTTGGAGACTATTATTCCTT+TGG 0.323714 4_1:+86824388 Msa0581450:CDS
CAAATGGAACTGGAGGAAAT+TGG 0.340815 4_1:+86823395 Msa0581450:CDS
TTCTCAACAGCTTCTCCTCT+TGG 0.342126 4_1:-86824497 None:intergenic
CAAAGGATCAAAACTTGATA+TGG 0.348542 4_1:+86824657 Msa0581450:CDS
AGGTAACTGAGCAGCAATAA+TGG 0.351596 4_1:-86824012 None:intergenic
TTGAGTGTAGCATCTTCTTC+AGG 0.353099 4_1:-86823358 None:intergenic
TACTAACAATGAAGGAATTC+AGG 0.353154 4_1:+86824523 Msa0581450:CDS
CAAGATTATGAACTAGGTTA+TGG 0.365764 4_1:+86824764 Msa0581450:CDS
ATAACCCTGCTGCACTAGTT+TGG 0.369985 4_1:+86824261 Msa0581450:CDS
TACATTGAAACAAATGGAAC+TGG 0.413107 4_1:+86823385 Msa0581450:CDS
GCTATTTCCAGAAGCATTGA+AGG 0.415074 4_1:-86824432 None:intergenic
TCTTGAGAAGGATGCAACTT+TGG 0.415428 4_1:-86824284 None:intergenic
AAATCCTACATTGAAACAAA+TGG 0.425709 4_1:+86823379 Msa0581450:CDS
CATAACCTAGTTCATAATCT+TGG 0.426322 4_1:-86824763 None:intergenic
TGATGAATCCCATGAGTTTG+AGG 0.428809 4_1:-86824714 None:intergenic
ATATGGTGGTCAAATGATTC+AGG 0.431167 4_1:+86824674 Msa0581450:CDS
ATTATTGCTGCTCAGTTACC+TGG 0.434957 4_1:+86824014 Msa0581450:CDS
AGTTCCATTTGTTTCAATGT+AGG 0.437388 4_1:-86823383 None:intergenic
GATTCAGGTGATACTAAATC+AGG 0.438934 4_1:+86824689 Msa0581450:CDS
ATGAATCAAAAGGACACAAA+TGG 0.442409 4_1:+86824131 Msa0581450:CDS
CAATGAAGGAATTCAGGAAC+TGG 0.460259 4_1:+86824529 Msa0581450:CDS
TTTGGCCAAACTAGTGCAGC+AGG 0.466216 4_1:-86824266 None:intergenic
ATGTTCCAAGATTATGAACT+AGG 0.478325 4_1:+86824758 Msa0581450:CDS
AATCAGGATCCTCAAACTCA+TGG 0.482426 4_1:+86824705 Msa0581450:CDS
CAACAACTTGATGAATCAAA+AGG 0.482715 4_1:+86824121 Msa0581450:CDS
AAATGCTTTCTCTTCACCAC+AGG 0.495198 4_1:+86824358 Msa0581450:CDS
TGCAGCCTTTACATAAGCAT+TGG 0.498062 4_1:+86823843 Msa0581450:CDS
TTTACATAAGCATTGGAAGC+AGG 0.498797 4_1:+86823850 Msa0581450:CDS
TCAACTAATCTTATGCAAGA+AGG 0.503672 4_1:+86824734 Msa0581450:CDS
CAACTAATCTTATGCAAGAA+GGG 0.511092 4_1:+86824735 Msa0581450:CDS
TGCTTCCAATGCTTATGTAA+AGG 0.518624 4_1:-86823848 None:intergenic
GTGGAAAGAGTTGCAGACTT+AGG 0.527362 4_1:+86823754 Msa0581450:CDS
GAGAAGAGTACTAACAATGA+AGG 0.532789 4_1:+86824515 Msa0581450:CDS
TATGAATTACAATGGTTCAA+AGG 0.542789 4_1:+86824640 Msa0581450:CDS
GAAGTATTGTTATTCTCCAA+AGG 0.545661 4_1:-86824404 None:intergenic
ACGTTAGCCTTGTCACAGCA+TGG 0.558452 4_1:-86823316 None:intergenic
GACAAGGCTAACGTGAAGAA+AGG 0.569489 4_1:+86823325 Msa0581450:CDS
ATCAGGATCCTCAAACTCAT+GGG 0.570771 4_1:+86824706 Msa0581450:CDS
AGGATCAAAACTTGATATGG+TGG 0.573580 4_1:+86824660 Msa0581450:CDS
TTCACAGGGCTCAAGAGATG+TGG 0.576710 4_1:+86823735 Msa0581450:intron
TAACAGAAATATAATTACAC+TGG 0.576922 4_1:+86824577 Msa0581450:CDS
TTCAGAGATATGAATTACAA+TGG 0.582081 4_1:+86824632 Msa0581450:CDS
CTAACGTGAAGAAAGGACCT+TGG 0.601182 4_1:+86823332 Msa0581450:CDS
GAAAGAGTTGCAGACTTAGG+TGG 0.603750 4_1:+86823757 Msa0581450:CDS
ATTGAAACAAATGGAACTGG+AGG 0.607543 4_1:+86823388 Msa0581450:CDS
TAGAGCTCCATGCTGTGACA+AGG 0.619639 4_1:+86823309 Msa0581450:CDS
CATTCAAGTGTTGCACCAAG+AGG 0.626324 4_1:+86824482 Msa0581450:CDS
TTGGCCAAACTAGTGCAGCA+GGG 0.663432 4_1:-86824265 None:intergenic
GCATCTTCTTCAGGAGACCA+AGG 0.668102 4_1:-86823349 None:intergenic
GTCTCCAAAAGATCAACCTG+TGG 0.671421 4_1:-86824374 None:intergenic
AGATTGAAGAAGAAATTACT+CGG 0.672782 4_1:+86824074 Msa0581450:CDS
TTGAGACCTAATATCAAACA+TGG 0.684201 4_1:+86823789 Msa0581450:CDS
AGACCTAATATCAAACATGG+TGG 0.691846 4_1:+86823792 Msa0581450:CDS
ACTGGAAGATGAATATCGTG+TGG 0.783497 4_1:+86824595 Msa0581450:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATTATTTATCTCTTTG+TGG + chr4_1:86823518-86823537 Msa0581450:intron 15.0%
!! ATAATTACAAAAAATTCACA+GGG + chr4_1:86823721-86823740 Msa0581450:intron 15.0%
!! AATTGTATCTATATAACTAT+AGG + chr4_1:86823985-86824004 Msa0581450:intron 15.0%
!! TATTATTGTAAAAAGACAAA+GGG - chr4_1:86824244-86824263 None:intergenic 15.0%
!! TTATTATTGTAAAAAGACAA+AGG - chr4_1:86824245-86824264 None:intergenic 15.0%
!! AATTATTATTTATCTCTTTG+TGG + chr4_1:86823518-86823537 Msa0581450:intron 15.0%
!! ATAATTACAAAAAATTCACA+GGG + chr4_1:86823721-86823740 Msa0581450:intron 15.0%
!! AATTGTATCTATATAACTAT+AGG + chr4_1:86823985-86824004 Msa0581450:intron 15.0%
!! TATTATTGTAAAAAGACAAA+GGG - chr4_1:86824244-86824263 None:intergenic 15.0%
!! TTATTATTGTAAAAAGACAA+AGG - chr4_1:86824245-86824264 None:intergenic 15.0%
!!! AAGTAATTACCAATTTTTTG+AGG - chr4_1:86823430-86823449 None:intergenic 20.0%
!! ATTAGTGCAAACTAATTAAT+GGG + chr4_1:86823698-86823717 Msa0581450:intron 20.0%
!! GATAATTACAAAAAATTCAC+AGG + chr4_1:86823720-86823739 Msa0581450:intron 20.0%
!! TAACAGAAATATAATTACAC+TGG + chr4_1:86824577-86824596 Msa0581450:CDS 20.0%
!!! AAGTAATTACCAATTTTTTG+AGG - chr4_1:86823430-86823449 None:intergenic 20.0%
!! ATTAGTGCAAACTAATTAAT+GGG + chr4_1:86823698-86823717 Msa0581450:intron 20.0%
!! GATAATTACAAAAAATTCAC+AGG + chr4_1:86823720-86823739 Msa0581450:intron 20.0%
!! TAACAGAAATATAATTACAC+TGG + chr4_1:86824577-86824596 Msa0581450:CDS 20.0%
! AAATCCTACATTGAAACAAA+TGG + chr4_1:86823379-86823398 Msa0581450:CDS 25.0%
!!! TCTATCTCTAGTTTTGTATT+TGG + chr4_1:86823638-86823657 Msa0581450:intron 25.0%
! GATTAGTGCAAACTAATTAA+TGG + chr4_1:86823697-86823716 Msa0581450:intron 25.0%
! TGTATCTATATAACTATAGG+TGG + chr4_1:86823988-86824007 Msa0581450:intron 25.0%
! ACAATGACATCAAAAACTAT+TGG + chr4_1:86824045-86824064 Msa0581450:CDS 25.0%
! AGATTGAAGAAGAAATTACT+CGG + chr4_1:86824074-86824093 Msa0581450:CDS 25.0%
!!! TAGAGTTTTGAAGACTAATT+TGG - chr4_1:86824319-86824338 None:intergenic 25.0%
! TTCAGAGATATGAATTACAA+TGG + chr4_1:86824632-86824651 Msa0581450:CDS 25.0%
! TATGAATTACAATGGTTCAA+AGG + chr4_1:86824640-86824659 Msa0581450:CDS 25.0%
! AAATCCTACATTGAAACAAA+TGG + chr4_1:86823379-86823398 Msa0581450:CDS 25.0%
!!! TCTATCTCTAGTTTTGTATT+TGG + chr4_1:86823638-86823657 Msa0581450:intron 25.0%
! GATTAGTGCAAACTAATTAA+TGG + chr4_1:86823697-86823716 Msa0581450:intron 25.0%
! TGTATCTATATAACTATAGG+TGG + chr4_1:86823988-86824007 Msa0581450:intron 25.0%
! ACAATGACATCAAAAACTAT+TGG + chr4_1:86824045-86824064 Msa0581450:CDS 25.0%
! AGATTGAAGAAGAAATTACT+CGG + chr4_1:86824074-86824093 Msa0581450:CDS 25.0%
!!! TAGAGTTTTGAAGACTAATT+TGG - chr4_1:86824319-86824338 None:intergenic 25.0%
! TTCAGAGATATGAATTACAA+TGG + chr4_1:86824632-86824651 Msa0581450:CDS 25.0%
! TATGAATTACAATGGTTCAA+AGG + chr4_1:86824640-86824659 Msa0581450:CDS 25.0%
AGTTCCATTTGTTTCAATGT+AGG - chr4_1:86823386-86823405 None:intergenic 30.0%
TACATTGAAACAAATGGAAC+TGG + chr4_1:86823385-86823404 Msa0581450:CDS 30.0%
ATTGCTCTTCCTCAAAAAAT+TGG + chr4_1:86823418-86823437 Msa0581450:CDS 30.0%
! ATATGTATGTATTGATCACG+AGG + chr4_1:86823494-86823513 Msa0581450:intron 30.0%
!!! ACCTCTTGTACTTTTTTCAT+CGG + chr4_1:86823548-86823567 Msa0581450:intron 30.0%
TTGAGACCTAATATCAAACA+TGG + chr4_1:86823789-86823808 Msa0581450:CDS 30.0%
AATCCACCATGTTTGATATT+AGG - chr4_1:86823798-86823817 None:intergenic 30.0%
GAGAAGAAACAATTCTAACA+TGG - chr4_1:86823952-86823971 None:intergenic 30.0%
CAACAACTTGATGAATCAAA+AGG + chr4_1:86824121-86824140 Msa0581450:CDS 30.0%
ATGAATCAAAAGGACACAAA+TGG + chr4_1:86824131-86824150 Msa0581450:CDS 30.0%
!!! TGGATCATTTTTTCTTGAGA+AGG - chr4_1:86824299-86824318 None:intergenic 30.0%
!!! AGAAAGCATTTTGCATCATA+CGG - chr4_1:86824349-86824368 None:intergenic 30.0%
TTTGGAGACTATTATTCCTT+TGG + chr4_1:86824388-86824407 Msa0581450:CDS 30.0%
!! GAAGTATTGTTATTCTCCAA+AGG - chr4_1:86824407-86824426 None:intergenic 30.0%
TACTAACAATGAAGGAATTC+AGG + chr4_1:86824523-86824542 Msa0581450:CDS 30.0%
CAAAGGATCAAAACTTGATA+TGG + chr4_1:86824657-86824676 Msa0581450:CDS 30.0%
TCAACTAATCTTATGCAAGA+AGG + chr4_1:86824734-86824753 Msa0581450:CDS 30.0%
CAACTAATCTTATGCAAGAA+GGG + chr4_1:86824735-86824754 Msa0581450:CDS 30.0%
ATGTTCCAAGATTATGAACT+AGG + chr4_1:86824758-86824777 Msa0581450:CDS 30.0%
CATAACCTAGTTCATAATCT+TGG - chr4_1:86824766-86824785 None:intergenic 30.0%
CAAGATTATGAACTAGGTTA+TGG + chr4_1:86824764-86824783 Msa0581450:CDS 30.0%
AGTTCCATTTGTTTCAATGT+AGG - chr4_1:86823386-86823405 None:intergenic 30.0%
TACATTGAAACAAATGGAAC+TGG + chr4_1:86823385-86823404 Msa0581450:CDS 30.0%
ATTGCTCTTCCTCAAAAAAT+TGG + chr4_1:86823418-86823437 Msa0581450:CDS 30.0%
! ATATGTATGTATTGATCACG+AGG + chr4_1:86823494-86823513 Msa0581450:intron 30.0%
!!! ACCTCTTGTACTTTTTTCAT+CGG + chr4_1:86823548-86823567 Msa0581450:intron 30.0%
TTGAGACCTAATATCAAACA+TGG + chr4_1:86823789-86823808 Msa0581450:CDS 30.0%
AATCCACCATGTTTGATATT+AGG - chr4_1:86823798-86823817 None:intergenic 30.0%
GAGAAGAAACAATTCTAACA+TGG - chr4_1:86823952-86823971 None:intergenic 30.0%
CAACAACTTGATGAATCAAA+AGG + chr4_1:86824121-86824140 Msa0581450:CDS 30.0%
ATGAATCAAAAGGACACAAA+TGG + chr4_1:86824131-86824150 Msa0581450:CDS 30.0%
!!! TGGATCATTTTTTCTTGAGA+AGG - chr4_1:86824299-86824318 None:intergenic 30.0%
!!! AGAAAGCATTTTGCATCATA+CGG - chr4_1:86824349-86824368 None:intergenic 30.0%
TTTGGAGACTATTATTCCTT+TGG + chr4_1:86824388-86824407 Msa0581450:CDS 30.0%
!! GAAGTATTGTTATTCTCCAA+AGG - chr4_1:86824407-86824426 None:intergenic 30.0%
TACTAACAATGAAGGAATTC+AGG + chr4_1:86824523-86824542 Msa0581450:CDS 30.0%
CAAAGGATCAAAACTTGATA+TGG + chr4_1:86824657-86824676 Msa0581450:CDS 30.0%
TCAACTAATCTTATGCAAGA+AGG + chr4_1:86824734-86824753 Msa0581450:CDS 30.0%
CAACTAATCTTATGCAAGAA+GGG + chr4_1:86824735-86824754 Msa0581450:CDS 30.0%
ATGTTCCAAGATTATGAACT+AGG + chr4_1:86824758-86824777 Msa0581450:CDS 30.0%
CATAACCTAGTTCATAATCT+TGG - chr4_1:86824766-86824785 None:intergenic 30.0%
CAAGATTATGAACTAGGTTA+TGG + chr4_1:86824764-86824783 Msa0581450:CDS 30.0%
ATTGAAACAAATGGAACTGG+AGG + chr4_1:86823388-86823407 Msa0581450:CDS 35.0%
!!! CCTCTTGTACTTTTTTCATC+GGG + chr4_1:86823549-86823568 Msa0581450:intron 35.0%
!!! CTCTTGTACTTTTTTCATCG+GGG + chr4_1:86823550-86823569 Msa0581450:intron 35.0%
AGACCTAATATCAAACATGG+TGG + chr4_1:86823792-86823811 Msa0581450:CDS 35.0%
TGCTTCCAATGCTTATGTAA+AGG - chr4_1:86823851-86823870 None:intergenic 35.0%
!! TTTACATAAGCATTGGAAGC+AGG + chr4_1:86823850-86823869 Msa0581450:CDS 35.0%
GAGTAATTTGAGGATAGACA+AGG - chr4_1:86823877-86823896 None:intergenic 35.0%
TGTAGAGATGGAGTAATTTG+AGG - chr4_1:86823887-86823906 None:intergenic 35.0%
ACAGTAGTATGTTGTAGAGA+TGG - chr4_1:86823899-86823918 None:intergenic 35.0%
!! GAGAAGAGTACTAACAATGA+AGG + chr4_1:86824515-86824534 Msa0581450:CDS 35.0%
AGGATCAAAACTTGATATGG+TGG + chr4_1:86824660-86824679 Msa0581450:CDS 35.0%
ATATGGTGGTCAAATGATTC+AGG + chr4_1:86824674-86824693 Msa0581450:CDS 35.0%
GATTCAGGTGATACTAAATC+AGG + chr4_1:86824689-86824708 Msa0581450:CDS 35.0%
ATTGAAACAAATGGAACTGG+AGG + chr4_1:86823388-86823407 Msa0581450:CDS 35.0%
!!! CCTCTTGTACTTTTTTCATC+GGG + chr4_1:86823549-86823568 Msa0581450:intron 35.0%
!!! CTCTTGTACTTTTTTCATCG+GGG + chr4_1:86823550-86823569 Msa0581450:intron 35.0%
AGACCTAATATCAAACATGG+TGG + chr4_1:86823792-86823811 Msa0581450:CDS 35.0%
TGCTTCCAATGCTTATGTAA+AGG - chr4_1:86823851-86823870 None:intergenic 35.0%
!! TTTACATAAGCATTGGAAGC+AGG + chr4_1:86823850-86823869 Msa0581450:CDS 35.0%
GAGTAATTTGAGGATAGACA+AGG - chr4_1:86823877-86823896 None:intergenic 35.0%
TGTAGAGATGGAGTAATTTG+AGG - chr4_1:86823887-86823906 None:intergenic 35.0%
ACAGTAGTATGTTGTAGAGA+TGG - chr4_1:86823899-86823918 None:intergenic 35.0%
!! GAGAAGAGTACTAACAATGA+AGG + chr4_1:86824515-86824534 Msa0581450:CDS 35.0%
AGGATCAAAACTTGATATGG+TGG + chr4_1:86824660-86824679 Msa0581450:CDS 35.0%
ATATGGTGGTCAAATGATTC+AGG + chr4_1:86824674-86824693 Msa0581450:CDS 35.0%
GATTCAGGTGATACTAAATC+AGG + chr4_1:86824689-86824708 Msa0581450:CDS 35.0%
TTGAGTGTAGCATCTTCTTC+AGG - chr4_1:86823361-86823380 None:intergenic 40.0%
CAAATGGAACTGGAGGAAAT+TGG + chr4_1:86823395-86823414 Msa0581450:CDS 40.0%
! CCCGATGAAAAAAGTACAAG+AGG - chr4_1:86823552-86823571 None:intergenic 40.0%
TGCAGCCTTTACATAAGCAT+TGG + chr4_1:86823843-86823862 Msa0581450:CDS 40.0%
AGGTAACTGAGCAGCAATAA+TGG - chr4_1:86824015-86824034 None:intergenic 40.0%
ATTATTGCTGCTCAGTTACC+TGG + chr4_1:86824014-86824033 Msa0581450:CDS 40.0%
ATGTCATTGTCTGTTCTTCC+AGG - chr4_1:86824035-86824054 None:intergenic 40.0%
TCTTGAGAAGGATGCAACTT+TGG - chr4_1:86824287-86824306 None:intergenic 40.0%
AAATGCTTTCTCTTCACCAC+AGG + chr4_1:86824358-86824377 Msa0581450:CDS 40.0%
!!! TTCACCACAGGTTGATCTTT+TGG + chr4_1:86824370-86824389 Msa0581450:CDS 40.0%
TCAGTTACCTTCAATGCTTC+TGG + chr4_1:86824425-86824444 Msa0581450:CDS 40.0%
!! GCTATTTCCAGAAGCATTGA+AGG - chr4_1:86824435-86824454 None:intergenic 40.0%
CAATGAAGGAATTCAGGAAC+TGG + chr4_1:86824529-86824548 Msa0581450:CDS 40.0%
ACTGGAAGATGAATATCGTG+TGG + chr4_1:86824595-86824614 Msa0581450:CDS 40.0%
AATCAGGATCCTCAAACTCA+TGG + chr4_1:86824705-86824724 Msa0581450:CDS 40.0%
ATCAGGATCCTCAAACTCAT+GGG + chr4_1:86824706-86824725 Msa0581450:CDS 40.0%
TGATGAATCCCATGAGTTTG+AGG - chr4_1:86824717-86824736 None:intergenic 40.0%
TTGAGTGTAGCATCTTCTTC+AGG - chr4_1:86823361-86823380 None:intergenic 40.0%
CAAATGGAACTGGAGGAAAT+TGG + chr4_1:86823395-86823414 Msa0581450:CDS 40.0%
! CCCGATGAAAAAAGTACAAG+AGG - chr4_1:86823552-86823571 None:intergenic 40.0%
TGCAGCCTTTACATAAGCAT+TGG + chr4_1:86823843-86823862 Msa0581450:CDS 40.0%
AGGTAACTGAGCAGCAATAA+TGG - chr4_1:86824015-86824034 None:intergenic 40.0%
ATTATTGCTGCTCAGTTACC+TGG + chr4_1:86824014-86824033 Msa0581450:CDS 40.0%
ATGTCATTGTCTGTTCTTCC+AGG - chr4_1:86824035-86824054 None:intergenic 40.0%
TCTTGAGAAGGATGCAACTT+TGG - chr4_1:86824287-86824306 None:intergenic 40.0%
AAATGCTTTCTCTTCACCAC+AGG + chr4_1:86824358-86824377 Msa0581450:CDS 40.0%
!!! TTCACCACAGGTTGATCTTT+TGG + chr4_1:86824370-86824389 Msa0581450:CDS 40.0%
TCAGTTACCTTCAATGCTTC+TGG + chr4_1:86824425-86824444 Msa0581450:CDS 40.0%
!! GCTATTTCCAGAAGCATTGA+AGG - chr4_1:86824435-86824454 None:intergenic 40.0%
CAATGAAGGAATTCAGGAAC+TGG + chr4_1:86824529-86824548 Msa0581450:CDS 40.0%
ACTGGAAGATGAATATCGTG+TGG + chr4_1:86824595-86824614 Msa0581450:CDS 40.0%
AATCAGGATCCTCAAACTCA+TGG + chr4_1:86824705-86824724 Msa0581450:CDS 40.0%
ATCAGGATCCTCAAACTCAT+GGG + chr4_1:86824706-86824725 Msa0581450:CDS 40.0%
TGATGAATCCCATGAGTTTG+AGG - chr4_1:86824717-86824736 None:intergenic 40.0%
GACAAGGCTAACGTGAAGAA+AGG + chr4_1:86823325-86823344 Msa0581450:CDS 45.0%
CTAACGTGAAGAAAGGACCT+TGG + chr4_1:86823332-86823351 Msa0581450:CDS 45.0%
GTGGAAAGAGTTGCAGACTT+AGG + chr4_1:86823754-86823773 Msa0581450:CDS 45.0%
GAAAGAGTTGCAGACTTAGG+TGG + chr4_1:86823757-86823776 Msa0581450:CDS 45.0%
ATAACCCTGCTGCACTAGTT+TGG + chr4_1:86824261-86824280 Msa0581450:CDS 45.0%
GTCTCCAAAAGATCAACCTG+TGG - chr4_1:86824377-86824396 None:intergenic 45.0%
! CATTCAAGTGTTGCACCAAG+AGG + chr4_1:86824482-86824501 Msa0581450:CDS 45.0%
TTCTCAACAGCTTCTCCTCT+TGG - chr4_1:86824500-86824519 None:intergenic 45.0%
GACAAGGCTAACGTGAAGAA+AGG + chr4_1:86823325-86823344 Msa0581450:CDS 45.0%
CTAACGTGAAGAAAGGACCT+TGG + chr4_1:86823332-86823351 Msa0581450:CDS 45.0%
GTGGAAAGAGTTGCAGACTT+AGG + chr4_1:86823754-86823773 Msa0581450:CDS 45.0%
GAAAGAGTTGCAGACTTAGG+TGG + chr4_1:86823757-86823776 Msa0581450:CDS 45.0%
ATAACCCTGCTGCACTAGTT+TGG + chr4_1:86824261-86824280 Msa0581450:CDS 45.0%
GTCTCCAAAAGATCAACCTG+TGG - chr4_1:86824377-86824396 None:intergenic 45.0%
! CATTCAAGTGTTGCACCAAG+AGG + chr4_1:86824482-86824501 Msa0581450:CDS 45.0%
TTCTCAACAGCTTCTCCTCT+TGG - chr4_1:86824500-86824519 None:intergenic 45.0%
TAGAGCTCCATGCTGTGACA+AGG + chr4_1:86823309-86823328 Msa0581450:CDS 50.0%
!! ACGTTAGCCTTGTCACAGCA+TGG - chr4_1:86823319-86823338 None:intergenic 50.0%
GCATCTTCTTCAGGAGACCA+AGG - chr4_1:86823352-86823371 None:intergenic 50.0%
TTCACAGGGCTCAAGAGATG+TGG + chr4_1:86823735-86823754 Msa0581450:intron 50.0%
TTGGCCAAACTAGTGCAGCA+GGG - chr4_1:86824268-86824287 None:intergenic 50.0%
TTTGGCCAAACTAGTGCAGC+AGG - chr4_1:86824269-86824288 None:intergenic 50.0%
TAGAGCTCCATGCTGTGACA+AGG + chr4_1:86823309-86823328 Msa0581450:CDS 50.0%
!! ACGTTAGCCTTGTCACAGCA+TGG - chr4_1:86823319-86823338 None:intergenic 50.0%
GCATCTTCTTCAGGAGACCA+AGG - chr4_1:86823352-86823371 None:intergenic 50.0%
TTCACAGGGCTCAAGAGATG+TGG + chr4_1:86823735-86823754 Msa0581450:intron 50.0%
TTGGCCAAACTAGTGCAGCA+GGG - chr4_1:86824268-86824287 None:intergenic 50.0%
TTTGGCCAAACTAGTGCAGC+AGG - chr4_1:86824269-86824288 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 86823304 86824793 86823304 ID=Msa0581450;Name=Msa0581450
chr4_1 mRNA 86823304 86824793 86823304 ID=Msa0581450-mRNA-1;Parent=Msa0581450;Name=Msa0581450-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|3|0|350
chr4_1 exon 86823304 86823439 86823304 ID=Msa0581450-mRNA-1:exon:32192;Parent=Msa0581450-mRNA-1
chr4_1 exon 86823742 86823871 86823742 ID=Msa0581450-mRNA-1:exon:32193;Parent=Msa0581450-mRNA-1
chr4_1 exon 86824007 86824793 86824007 ID=Msa0581450-mRNA-1:exon:32194;Parent=Msa0581450-mRNA-1
chr4_1 CDS 86823304 86823439 86823304 ID=Msa0581450-mRNA-1:cds;Parent=Msa0581450-mRNA-1
chr4_1 CDS 86823742 86823871 86823742 ID=Msa0581450-mRNA-1:cds;Parent=Msa0581450-mRNA-1
chr4_1 CDS 86824007 86824793 86824007 ID=Msa0581450-mRNA-1:cds;Parent=Msa0581450-mRNA-1
Gene Sequence

>Msa0581450

ATGGGTAGAGCTCCATGCTGTGACAAGGCTAACGTGAAGAAAGGACCTTGGTCTCCTGAAGAAGATGCTACACTCAAATCCTACATTGAAACAAATGGAACTGGAGGAAATTGGATTGCTCTTCCTCAAAAAATTGGGCTCAAGAGATGTGGAAAGAGTTGCAGACTTAGGTGGTTAAATTACTTGAGACCTAATATCAAACATGGTGGATTTACTGAAGAAGAAGACAACATCATTTGCAGCCTTTACATAAGCATTGGAAGCAGGTGGTCCATTATTGCTGCTCAGTTACCTGGAAGAACAGACAATGACATCAAAAACTATTGGAACACAAGATTGAAGAAGAAATTACTCGGAAAGCGAAAACAATCGAATAACAACAACAACTTGATGAATCAAAAGGACACAAATGGAATAGATGATAATTCTTATTCAAATTCATTAAGTAGCTCAGCTCTTGAGAGACTTCAACTTCATATGCAACTTCAAAGTCTTCAAAACCCTTTGTCTTTTTACAATAATAACCCTGCTGCACTAGTTTGGCCAAAGTTGCATCCTTCTCAAGAAAAAATGATCCAAATTAGTCTTCAAAACTCTAATAACAACCGTATGATGCAAAATGCTTTCTCTTCACCACAGGTTGATCTTTTGGAGACTATTATTCCTTTGGAGAATAACAATACTTCAGTTACCTTCAATGCTTCTGGAAATAGCAGTAATAATAATAATAATTCAATCATGCATTCAAGTGTTGCACCAAGAGGAGAAGCTGTTGAGAAGAGTACTAACAATGAAGGAATTCAGGAACTGGAAAGTGAACTAGATGAAATTCTCAATAACAGAAATATAATTACACTGGAAGATGAATATCGTGTGGCTGAATTTGATTGTTTCAGAGATATGAATTACAATGGTTCAAAGGATCAAAACTTGATATGGTGGTCAAATGATTCAGGTGATACTAAATCAGGATCCTCAAACTCATGGGATTCATCAACTAATCTTATGCAAGAAGGGATGTTCCAAGATTATGAACTAGGTTATGGTCTGTAG
Protein sequence

>Msa0581450

MGRAPCCDKANVKKGPWSPEEDATLKSYIETNGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKRKQSNNNNNLMNQKDTNGIDDNSYSNSLSSSALERLQLHMQLQSLQNPLSFYNNNPAALVWPKLHPSQEKMIQISLQNSNNNRMMQNAFSSPQVDLLETIIPLENNNTSVTFNASGNSSNNNNNSIMHSSVAPRGEAVEKSTNNEGIQELESELDEILNNRNIITLEDEYRVAEFDCFRDMNYNGSKDQNLIWWSNDSGDTKSGSSNSWDSSTNLMQEGMFQDYELGYGL*