Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0582030 | XP_013457089.1 | 88.194 | 288 | 11 | 2 | 1 | 274 | 1 | 279 | 1.45e-178 | 508 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0582030 | sp|Q42191|OXA1_ARATH | 48.980 | 294 | 123 | 5 | 1 | 274 | 1 | 287 | 8.77e-89 | 273 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0582030 | A0A072UZ26 | 88.194 | 288 | 11 | 2 | 1 | 274 | 1 | 279 | 6.93e-179 | 508 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0564510 | Msa0582030 | -0.800112 | 1.679345e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0582030 | MtrunA17_Chr4g0047781 | 88.194 | 288 | 11 | 2 | 1 | 274 | 1 | 279 | 0.0 | 508 |
| Msa0582030 | MtrunA17_Chr4g0059781 | 70.270 | 296 | 60 | 9 | 1 | 274 | 1 | 290 | 4.36e-136 | 391 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0582030 | AT5G62050.1 | 48.980 | 294 | 123 | 5 | 1 | 274 | 1 | 287 | 8.92e-90 | 273 |
| Msa0582030 | AT2G46470.1 | 49.829 | 293 | 116 | 10 | 5 | 274 | 6 | 290 | 1.87e-74 | 234 |
Find 63 sgRNAs with CRISPR-Local
Find 419 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAGCATGGTGGAGCTTTC+TGG | 0.148333 | 4_1:-87621772 | Msa0582030:CDS |
| AGTCCCTTCAATGGAGTAAA+AGG | 0.283985 | 4_1:+87621971 | None:intergenic |
| GATCAATTGTTGACATATTT+CGG | 0.296974 | 4_1:+87627521 | None:intergenic |
| GTGACTTCTCAGGCCGCTTC+CGG | 0.326683 | 4_1:-87627430 | Msa0582030:CDS |
| GTTGAAGATGGTTTATCATC+TGG | 0.333131 | 4_1:+87627667 | None:intergenic |
| GCCTCGCTTGGAACAGATAA+AGG | 0.347606 | 4_1:-87625191 | Msa0582030:CDS |
| TTGATGGTAGATAACAAATA+TGG | 0.363714 | 4_1:-87621813 | Msa0582030:intron |
| AATGACAAAGCAGTCAAAAC+TGG | 0.374797 | 4_1:+87621710 | None:intergenic |
| AGATGGTTTATCATCTGGTT+TGG | 0.374975 | 4_1:+87627672 | None:intergenic |
| TCCTTTCGAACCTCTCTTAA+CGG | 0.387075 | 4_1:-87627613 | Msa0582030:CDS |
| ATCTGGTTTGGTTTCATCGT+CGG | 0.403577 | 4_1:+87627684 | None:intergenic |
| TAAGTTTGCCTCTTTGTAAG+AGG | 0.410800 | 4_1:+87627749 | None:intergenic |
| TTGAAGGGACTCTTTATTCA+AGG | 0.424990 | 4_1:-87621959 | Msa0582030:CDS |
| CGCGGCTGTTGCTCAAGGTC+AGG | 0.433202 | 4_1:-87622609 | Msa0582030:CDS |
| CGTGGAGGCTGTGACTTCTC+AGG | 0.444980 | 4_1:-87627440 | Msa0582030:CDS |
| CGTGCGTGCTGCAGCTTATG+AGG | 0.449408 | 4_1:-87625213 | Msa0582030:intron |
| AGGTTCGAAAGGATCTTGAT+TGG | 0.451161 | 4_1:+87627623 | None:intergenic |
| ACATACTGCAAGGCTTGAAC+AGG | 0.459733 | 4_1:+87627367 | None:intergenic |
| ATCAGCTACATCAGTCATTA+CGG | 0.465035 | 4_1:+87627480 | None:intergenic |
| GATGATAAACCATCTTCAAC+AGG | 0.465338 | 4_1:-87627664 | Msa0582030:CDS |
| GCAGCTTATGAGGCCTCGCT+TGG | 0.467037 | 4_1:-87625203 | Msa0582030:intron |
| TTGAGTTGATTTACTAAGAG+TGG | 0.468470 | 4_1:+87625574 | None:intergenic |
| GAAGATAGGTGAAAGAAGGA+TGG | 0.478453 | 4_1:+87627713 | None:intergenic |
| GGTTCGAAAGGATCTTGATT+GGG | 0.484334 | 4_1:+87627624 | None:intergenic |
| TCTCTTAACGGAGGATCAAT+CGG | 0.490775 | 4_1:-87627601 | Msa0582030:CDS |
| AAACACCTTTCACCGTTCGC+TGG | 0.493100 | 4_1:-87627556 | Msa0582030:CDS |
| TGAATAAAGAGTCCCTTCAA+TGG | 0.494848 | 4_1:+87621962 | None:intergenic |
| CAAGGCCACTTCTAAGCTTA+CGG | 0.496018 | 4_1:-87625554 | Msa0582030:intron |
| TGGAGAAGATAGGTGAAAGA+AGG | 0.499684 | 4_1:+87627709 | None:intergenic |
| GTCATTCTTAATAGTAGTAG+AGG | 0.501291 | 4_1:-87621693 | None:intergenic |
| TCCTTTATCTGTTCCAAGCG+AGG | 0.501340 | 4_1:+87625190 | None:intergenic |
| TGACCTTGAGCAACAGCCGC+GGG | 0.530274 | 4_1:+87622611 | None:intergenic |
| CACGAGAGTTGTTAGAGCTA+TGG | 0.534089 | 4_1:+87625615 | None:intergenic |
| ATACTGAATCCTGTTGAAGA+TGG | 0.537028 | 4_1:+87627655 | None:intergenic |
| AAAGGAAGAGATGGACGGGA+AGG | 0.537702 | 4_1:-87625173 | Msa0582030:intron |
| TATATCCAGCGAACGGTGAA+AGG | 0.538999 | 4_1:+87627551 | None:intergenic |
| GCTCCACCATGCTTGAATGA+TGG | 0.539377 | 4_1:+87621779 | None:intergenic |
| GATCCCGCGGCTGTTGCTCA+AGG | 0.545617 | 4_1:-87622614 | Msa0582030:CDS |
| AGATAAAGGAAGAGATGGAC+GGG | 0.571823 | 4_1:-87625177 | Msa0582030:CDS |
| AACTTCGCTAACACCGGAAG+CGG | 0.575292 | 4_1:+87627417 | None:intergenic |
| AAGATAGGTGAAAGAAGGAT+GGG | 0.581200 | 4_1:+87627714 | None:intergenic |
| AGACGTTGCCTCTTACAAAG+AGG | 0.588568 | 4_1:-87627757 | Msa0582030:CDS |
| AAATACCGTAAGCTTAGAAG+TGG | 0.593482 | 4_1:+87625549 | None:intergenic |
| GTTTGGTTTCATCGTCGGTG+TGG | 0.594247 | 4_1:+87627689 | None:intergenic |
| ATAAGAATCAGCAGCAGCAA+TGG | 0.594496 | 4_1:+87627393 | None:intergenic |
| CTGACCTTGAGCAACAGCCG+CGG | 0.596951 | 4_1:+87622610 | None:intergenic |
| GGAACAGATAAAGGAAGAGA+TGG | 0.597657 | 4_1:-87625182 | Msa0582030:CDS |
| ATCGTCGGTGTGGAGAAGAT+AGG | 0.597699 | 4_1:+87627699 | None:intergenic |
| GAGGCAAACTTATAGATCGA+AGG | 0.602930 | 4_1:-87627738 | Msa0582030:CDS |
| ACTCTTAGTAAATCAACTCA+AGG | 0.611365 | 4_1:-87625572 | Msa0582030:CDS |
| CTGAGAAGTCACAGCCTCCA+CGG | 0.623083 | 4_1:+87627441 | None:intergenic |
| GCTCCTTTGTATCAGGTGGG+CGG | 0.627232 | 4_1:-87625638 | Msa0582030:intron |
| GATTGATCCTCCGTTAAGAG+AGG | 0.628168 | 4_1:+87627603 | None:intergenic |
| CAGATAAAGGAAGAGATGGA+CGG | 0.632327 | 4_1:-87625178 | Msa0582030:CDS |
| AATGGCAACTTCGCTAACAC+CGG | 0.633656 | 4_1:+87627411 | None:intergenic |
| TCCGTTAAGAGAGGTTCGAA+AGG | 0.633751 | 4_1:+87627612 | None:intergenic |
| CTGTTGCTCAAGGTCAGGAG+AGG | 0.636563 | 4_1:-87622604 | Msa0582030:CDS |
| AAAATGCCATCATTCAAGCA+TGG | 0.643362 | 4_1:-87621785 | Msa0582030:CDS |
| TTTCGAACCTCTCTTAACGG+AGG | 0.667650 | 4_1:-87627610 | Msa0582030:CDS |
| ATGCCATCATTCAAGCATGG+TGG | 0.677283 | 4_1:-87621782 | Msa0582030:CDS |
| CAGTAATTATATCCAGCGAA+CGG | 0.679546 | 4_1:+87627544 | None:intergenic |
| TTTAACTGATACCACCGTGG+AGG | 0.724538 | 4_1:-87627455 | Msa0582030:CDS |
| AGAAGTCACAGCCTCCACGG+TGG | 0.789737 | 4_1:+87627444 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTATTTATTTTTAATTTGT+AGG | - | chr4_1:87626299-87626318 | Msa0582030:intron | 10.0% |
| !!! | CTATTTATTTTTAATTTGTA+GGG | - | chr4_1:87626300-87626319 | Msa0582030:intron | 10.0% |
| !!! | TTTTCTTTTTAAATATTTGT+AGG | - | chr4_1:87626333-87626352 | Msa0582030:intron | 10.0% |
| !! | AATATATAAAATATCTCAAT+AGG | - | chr4_1:87626378-87626397 | Msa0582030:intron | 10.0% |
| !! | TTTCATATTTATTTAGTATT+AGG | - | chr4_1:87626527-87626546 | Msa0582030:intron | 10.0% |
| !! | AAAACTGTCAAAAAATTATA+TGG | + | chr4_1:87623090-87623109 | None:intergenic | 15.0% |
| !!! | TAGCTATATTTTATAAAATC+AGG | + | chr4_1:87623190-87623209 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | - | chr4_1:87623503-87623522 | Msa0582030:intron | 15.0% |
| !!! | ATTTTATCCATTTTGAATAA+AGG | - | chr4_1:87624150-87624169 | Msa0582030:intron | 15.0% |
| !! | TAAAAATATTTACAACATCA+AGG | - | chr4_1:87624791-87624810 | Msa0582030:intron | 15.0% |
| !!! | TTGTTCATAGTATTTTAAAA+TGG | + | chr4_1:87625081-87625100 | None:intergenic | 15.0% |
| !! | AATAAAGAAAAAGAAAGAAA+TGG | + | chr4_1:87625454-87625473 | None:intergenic | 15.0% |
| !!! | TTTTTCTTCATTGTTTAAAT+CGG | - | chr4_1:87625630-87625649 | Msa0582030:intron | 15.0% |
| !! | ATATTAAGAGTTTCAAATTA+TGG | + | chr4_1:87626621-87626640 | None:intergenic | 15.0% |
| !!! | TGTTTTCATTAAATTGAAAA+TGG | - | chr4_1:87627233-87627252 | Msa0582030:intron | 15.0% |
| !! | ATATAAGATATATGATGTAT+TGG | - | chr4_1:87627352-87627371 | Msa0582030:intron | 15.0% |
| !! | TGATTTAATACTTAAAATGA+AGG | + | chr4_1:87627395-87627414 | None:intergenic | 15.0% |
| !! | AAGAAAATAAAATTGTGAAT+GGG | + | chr4_1:87627623-87627642 | None:intergenic | 15.0% |
| !! | TTTATGAAAATAAACCACAA+GGG | - | chr4_1:87622666-87622685 | Msa0582030:intron | 20.0% |
| !!! | AACTAACTGTTTTAGATTTA+GGG | + | chr4_1:87622734-87622753 | None:intergenic | 20.0% |
| !! | ATCATAACTTCACAAAAAAT+AGG | - | chr4_1:87623048-87623067 | Msa0582030:intron | 20.0% |
| !!! | CTATATTTTATAAAATCAGG+TGG | + | chr4_1:87623187-87623206 | None:intergenic | 20.0% |
| !!! | TGTAATTTTGTAATGTTACA+TGG | - | chr4_1:87623226-87623245 | Msa0582030:intron | 20.0% |
| !! | AATTAAACTTTGAATTGAGT+AGG | - | chr4_1:87623609-87623628 | Msa0582030:intron | 20.0% |
| !! | ATTAAACTTTGAATTGAGTA+GGG | - | chr4_1:87623610-87623629 | Msa0582030:intron | 20.0% |
| !! | ATTAAGTAACTAAACTTACA+AGG | - | chr4_1:87623669-87623688 | Msa0582030:intron | 20.0% |
| !!! | TTGAATGATCTAGAATTTAT+AGG | - | chr4_1:87623743-87623762 | Msa0582030:intron | 20.0% |
| !!! | TGAATGATCTAGAATTTATA+GGG | - | chr4_1:87623744-87623763 | Msa0582030:intron | 20.0% |
| !! | AAATAATGTATCCTTAACAT+GGG | - | chr4_1:87624087-87624106 | Msa0582030:intron | 20.0% |
| !! | ATTCAAAATGGATAAAATGA+AGG | + | chr4_1:87624148-87624167 | None:intergenic | 20.0% |
| !! | TAGGTAATAATAAGATAGAA+AGG | + | chr4_1:87624215-87624234 | None:intergenic | 20.0% |
| !! | TTTCTTAAAACCATTAATAG+CGG | - | chr4_1:87624336-87624355 | Msa0582030:intron | 20.0% |
| !!! | ATAAAACAATATAACTTGTG+CGG | + | chr4_1:87624413-87624432 | None:intergenic | 20.0% |
| !! | AATATCCATTTCAAAATACT+AGG | - | chr4_1:87624980-87624999 | Msa0582030:intron | 20.0% |
| !! | ACTTAACTCATAAAAATACT+AGG | - | chr4_1:87625006-87625025 | Msa0582030:intron | 20.0% |
| !! | GATTTAAACAATGAAGAAAA+AGG | + | chr4_1:87625631-87625650 | None:intergenic | 20.0% |
| !!! | CTCACTATCAAATTTTATAT+CGG | - | chr4_1:87625941-87625960 | Msa0582030:intron | 20.0% |
| !!! | TCACTATCAAATTTTATATC+GGG | - | chr4_1:87625942-87625961 | Msa0582030:intron | 20.0% |
| !! | AAACCAAAAAAAAAAACTGA+GGG | + | chr4_1:87626279-87626298 | None:intergenic | 20.0% |
| !! | AAAACCAAAAAAAAAAACTG+AGG | + | chr4_1:87626280-87626299 | None:intergenic | 20.0% |
| !! | AACACAAATTCCTAATTATA+GGG | + | chr4_1:87626563-87626582 | None:intergenic | 20.0% |
| !! | AAACACAAATTCCTAATTAT+AGG | + | chr4_1:87626564-87626583 | None:intergenic | 20.0% |
| !! | TTCAAATTATGGATAATAAC+TGG | + | chr4_1:87626610-87626629 | None:intergenic | 20.0% |
| !!! | AAATTGATTCTTTGACATAT+TGG | - | chr4_1:87626721-87626740 | Msa0582030:intron | 20.0% |
| !!! | AATTGATTCTTTGACATATT+GGG | - | chr4_1:87626722-87626741 | Msa0582030:intron | 20.0% |
| !! | AACTAATTACTAACATTGAT+TGG | + | chr4_1:87627086-87627105 | None:intergenic | 20.0% |
| !!! | CTAAAATGAATTAGATGTTT+TGG | - | chr4_1:87627270-87627289 | Msa0582030:intron | 20.0% |
| !! | GAAGAAAATAAAATTGTGAA+TGG | + | chr4_1:87627624-87627643 | None:intergenic | 20.0% |
| !!! | TTTTATTTTCTTCTCTTTGA+TGG | - | chr4_1:87627631-87627650 | Msa0582030:CDS | 20.0% |
| ! | GATCAATTGTTGACATATTT+CGG | + | chr4_1:87621942-87621961 | None:intergenic | 25.0% |
| ! | CATCATATAACAAAAACAGT+TGG | + | chr4_1:87622274-87622293 | None:intergenic | 25.0% |
| ! | AGATAAGTTCAAATAAGCTA+AGG | - | chr4_1:87622364-87622383 | Msa0582030:intron | 25.0% |
| ! | ATGATAAGATCTGTTTGAAT+CGG | + | chr4_1:87622625-87622644 | None:intergenic | 25.0% |
| ! | TATCATATCATAAGCTATCT+TGG | - | chr4_1:87622639-87622658 | Msa0582030:intron | 25.0% |
| ! | GTTTATGAAAATAAACCACA+AGG | - | chr4_1:87622665-87622684 | Msa0582030:intron | 25.0% |
| !!! | GAACTAACTGTTTTAGATTT+AGG | + | chr4_1:87622735-87622754 | None:intergenic | 25.0% |
| ! | TTAAGTGATAAAGTGACTAA+AGG | + | chr4_1:87622867-87622886 | None:intergenic | 25.0% |
| ! | ACACATTATTGTAAAAGACA+GGG | + | chr4_1:87623116-87623135 | None:intergenic | 25.0% |
| !! | TTACATGGACTAAATATCTT+AGG | - | chr4_1:87623241-87623260 | Msa0582030:intron | 25.0% |
| ! | TTAAGTAGACTAAACTTACA+AGG | + | chr4_1:87623299-87623318 | None:intergenic | 25.0% |
| ! | ATTAATCAAACTTTGTAGCA+GGG | + | chr4_1:87623363-87623382 | None:intergenic | 25.0% |
| ! | AATTAATCAAACTTTGTAGC+AGG | + | chr4_1:87623364-87623383 | None:intergenic | 25.0% |
| ! | AAATCGTTCTTAAGAGTTTA+AGG | + | chr4_1:87623389-87623408 | None:intergenic | 25.0% |
| ! | ACAAGATTAAACACTATGAA+AGG | - | chr4_1:87623416-87623435 | Msa0582030:intron | 25.0% |
| ! | AACTTCAGTCATTATAAGAT+TGG | + | chr4_1:87623725-87623744 | None:intergenic | 25.0% |
| ! | CATTATTTCAAAGTGGAAAA+GGG | + | chr4_1:87624075-87624094 | None:intergenic | 25.0% |
| ! | ACATTATTTCAAAGTGGAAA+AGG | + | chr4_1:87624076-87624095 | None:intergenic | 25.0% |
| ! | AAGGATACATTATTTCAAAG+TGG | + | chr4_1:87624082-87624101 | None:intergenic | 25.0% |
| ! | GAAATAATGTATCCTTAACA+TGG | - | chr4_1:87624086-87624105 | Msa0582030:intron | 25.0% |
| ! | GATAAAATGAAGGAACAAAA+TGG | + | chr4_1:87624138-87624157 | None:intergenic | 25.0% |
| ! | AACATATATACAACAAGCAT+CGG | + | chr4_1:87624177-87624196 | None:intergenic | 25.0% |
| ! | TATGTCATTAGTAAAACTAC+AGG | - | chr4_1:87624513-87624532 | Msa0582030:intron | 25.0% |
| ! | ATAAAACGTAACTACTTAAG+TGG | + | chr4_1:87624555-87624574 | None:intergenic | 25.0% |
| ! | AGGTTTCTATCATATTTCAT+TGG | + | chr4_1:87624588-87624607 | None:intergenic | 25.0% |
| ! | AAATATGATGGCCTAAAATT+GGG | + | chr4_1:87624639-87624658 | None:intergenic | 25.0% |
| ! | AAAATATGATGGCCTAAAAT+TGG | + | chr4_1:87624640-87624659 | None:intergenic | 25.0% |
| !!! | TTAGGCCATCATATTTTTTT+AGG | - | chr4_1:87624643-87624662 | Msa0582030:intron | 25.0% |
| !!! | AAAAAGTGTTGCAATGTATT+AGG | + | chr4_1:87624712-87624731 | None:intergenic | 25.0% |
| ! | GAATACCACAATCAATAAAA+TGG | - | chr4_1:87625274-87625293 | Msa0582030:intron | 25.0% |
| ! | AATGGAAGGAGAAATAATAT+TGG | - | chr4_1:87625292-87625311 | Msa0582030:intron | 25.0% |
| ! | ATGGAAGGAGAAATAATATT+GGG | - | chr4_1:87625293-87625312 | Msa0582030:intron | 25.0% |
| !!! | TTTTTAAAATGTTGCGTTTC+AGG | - | chr4_1:87625479-87625498 | Msa0582030:intron | 25.0% |
| !! | TTCATTGTTTAAATCGGTTT+CGG | - | chr4_1:87625636-87625655 | Msa0582030:intron | 25.0% |
| ! | AACATAACTAGTAAGTGATT+CGG | + | chr4_1:87625695-87625714 | None:intergenic | 25.0% |
| !! | TCAACTTGAGAGAAATTTTA+TGG | + | chr4_1:87626177-87626196 | None:intergenic | 25.0% |
| ! | AAAATATCTCAATAGGTCAT+TGG | - | chr4_1:87626385-87626404 | Msa0582030:intron | 25.0% |
| ! | AGTAGTATAAAACTAATCCT+AGG | + | chr4_1:87626483-87626502 | None:intergenic | 25.0% |
| !!! | GTTGTTAGCTTTAGATAAAA+AGG | + | chr4_1:87626650-87626669 | None:intergenic | 25.0% |
| !! | ATTGATTCTTTGACATATTG+GGG | - | chr4_1:87626723-87626742 | Msa0582030:intron | 25.0% |
| ! | ATGGTTTCTTTAATGCATAA+TGG | - | chr4_1:87626910-87626929 | Msa0582030:intron | 25.0% |
| ! | TTTAGTGTAATTACTGCATT+TGG | - | chr4_1:87626958-87626977 | Msa0582030:intron | 25.0% |
| ! | AAAATAGTAGTGATACAGAA+CGG | + | chr4_1:87627194-87627213 | None:intergenic | 25.0% |
| !!! | AGATGTTTTGGTATTTCTTT+TGG | - | chr4_1:87627282-87627301 | Msa0582030:intron | 25.0% |
| ! | AAGTATTAAATCAACCTTCA+TGG | - | chr4_1:87627402-87627421 | Msa0582030:CDS | 25.0% |
| ! | AGAAAAAAACTAATGAAGAC+AGG | + | chr4_1:87627528-87627547 | None:intergenic | 25.0% |
| !!! | CTTCATTAGTTTTTTTCTTG+CGG | - | chr4_1:87627530-87627549 | Msa0582030:CDS | 25.0% |
| ! | AATGGGTAGAAACAATATAA+AGG | + | chr4_1:87627606-87627625 | None:intergenic | 25.0% |
| !! | TTGATGGTAGATAACAAATA+TGG | - | chr4_1:87627647-87627666 | Msa0582030:CDS | 25.0% |
| ! | TGATGTTTTCGTAACCTTTA+TGG | - | chr4_1:87622289-87622308 | Msa0582030:intron | 30.0% |
| AGCTATTGTCATAAGTTAAC+TGG | - | chr4_1:87622460-87622479 | Msa0582030:intron | 30.0% | |
| GCTATTGTCATAAGTTAACT+GGG | - | chr4_1:87622461-87622480 | Msa0582030:intron | 30.0% | |
| !! | ATGTCATAAGTTGTTTTCCT+AGG | - | chr4_1:87622521-87622540 | Msa0582030:intron | 30.0% |
| TGATAAGATCTGTTTGAATC+GGG | + | chr4_1:87622624-87622643 | None:intergenic | 30.0% | |
| ! | ACAGTTAGTTCGAATTTTGA+AGG | - | chr4_1:87622744-87622763 | Msa0582030:intron | 30.0% |
| AATTTCCCTAGTGTGATATT+TGG | - | chr4_1:87622806-87622825 | Msa0582030:intron | 30.0% | |
| AAAAGCCAAATATCACACTA+GGG | + | chr4_1:87622814-87622833 | None:intergenic | 30.0% | |
| TAAAAGCCAAATATCACACT+AGG | + | chr4_1:87622815-87622834 | None:intergenic | 30.0% | |
| TCCAATTTGGATATTCGTAT+GGG | + | chr4_1:87622937-87622956 | None:intergenic | 30.0% | |
| TTCCAATTTGGATATTCGTA+TGG | + | chr4_1:87622938-87622957 | None:intergenic | 30.0% | |
| GAATATCCAAATTGGAATCT+TGG | - | chr4_1:87622941-87622960 | Msa0582030:intron | 30.0% | |
| AATAAGCCAAGATTCCAATT+TGG | + | chr4_1:87622950-87622969 | None:intergenic | 30.0% | |
| !! | TTGGAATCTTGGCTTATTTT+AGG | - | chr4_1:87622952-87622971 | Msa0582030:intron | 30.0% |
| !!! | TAGGACCATTTTAAGTTGAA+CGG | - | chr4_1:87622971-87622990 | Msa0582030:intron | 30.0% |
| AATTCCCGTTCAACTTAAAA+TGG | + | chr4_1:87622979-87622998 | None:intergenic | 30.0% | |
| !! | TTTAAGTTGAACGGGAATTT+AGG | - | chr4_1:87622980-87622999 | Msa0582030:intron | 30.0% |
| !! | TTAAGTTGAACGGGAATTTA+GGG | - | chr4_1:87622981-87623000 | Msa0582030:intron | 30.0% |
| GACACATTATTGTAAAAGAC+AGG | + | chr4_1:87623117-87623136 | None:intergenic | 30.0% | |
| TTTATAAAACGAGTGCTTGT+TGG | - | chr4_1:87623153-87623172 | Msa0582030:intron | 30.0% | |
| TTATAAAACGAGTGCTTGTT+GGG | - | chr4_1:87623154-87623173 | Msa0582030:intron | 30.0% | |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | chr4_1:87623284-87623303 | None:intergenic | 30.0% |
| AGAATCAATTTGCGATAATG+CGG | - | chr4_1:87623530-87623549 | Msa0582030:intron | 30.0% | |
| !! | TTGAGTTGATTTACTAAGAG+TGG | + | chr4_1:87623889-87623908 | None:intergenic | 30.0% |
| ACTCTTAGTAAATCAACTCA+AGG | - | chr4_1:87623888-87623907 | Msa0582030:intron | 30.0% | |
| GTGCATACAAATTAGATGTT+TGG | - | chr4_1:87624028-87624047 | Msa0582030:intron | 30.0% | |
| ACATATATACAACAAGCATC+GGG | + | chr4_1:87624176-87624195 | None:intergenic | 30.0% | |
| AGCAATATATCCGCTATTAA+TGG | + | chr4_1:87624349-87624368 | None:intergenic | 30.0% | |
| CATCATGTTAAACACTTAAC+TGG | + | chr4_1:87624490-87624509 | None:intergenic | 30.0% | |
| ATGCGCCTAAAAAAATATGA+TGG | + | chr4_1:87624651-87624670 | None:intergenic | 30.0% | |
| !!! | TCATATTTTTTTAGGCGCAT+AGG | - | chr4_1:87624651-87624670 | Msa0582030:intron | 30.0% |
| ! | TCTTAGTTTAGAAGTCGTTT+TGG | + | chr4_1:87624740-87624759 | None:intergenic | 30.0% |
| GTTCATGCTAAGAACTTTAT+AGG | + | chr4_1:87624827-87624846 | None:intergenic | 30.0% | |
| ACTATGAACAATTAGTCCAT+AGG | - | chr4_1:87625090-87625109 | Msa0582030:intron | 30.0% | |
| GTGTTATGATGAAAAACTGT+TGG | + | chr4_1:87625209-87625228 | None:intergenic | 30.0% | |
| ACCACAATCAATAAAATGGA+AGG | - | chr4_1:87625278-87625297 | Msa0582030:intron | 30.0% | |
| !! | TCCTTCCATTTTATTGATTG+TGG | + | chr4_1:87625282-87625301 | None:intergenic | 30.0% |
| AAGGAGAAATAATATTGGGA+AGG | - | chr4_1:87625297-87625316 | Msa0582030:intron | 30.0% | |
| GTGTAGTGTTTATAAAGCTT+GGG | + | chr4_1:87626010-87626029 | None:intergenic | 30.0% | |
| TGTGTAGTGTTTATAAAGCT+TGG | + | chr4_1:87626011-87626030 | None:intergenic | 30.0% | |
| !!! | ATGATCATGTCATTTTAGCT+AGG | - | chr4_1:87626196-87626215 | Msa0582030:intron | 30.0% |
| ! | GTCTTTCCAACTATTGTTTT+TGG | - | chr4_1:87626250-87626269 | Msa0582030:intron | 30.0% |
| !!! | TTTCCAACTATTGTTTTTGG+TGG | - | chr4_1:87626253-87626272 | Msa0582030:intron | 30.0% |
| ! | TCAATAGGTCATTGGTAATT+TGG | - | chr4_1:87626393-87626412 | Msa0582030:intron | 30.0% |
| AGTCATGTATCCCTATAATT+AGG | - | chr4_1:87626550-87626569 | Msa0582030:intron | 30.0% | |
| AATTGCTCTCTAATCACAAT+AGG | - | chr4_1:87626804-87626823 | Msa0582030:intron | 30.0% | |
| TGCATTAAAGAAACCATGAA+TGG | + | chr4_1:87626907-87626926 | None:intergenic | 30.0% | |
| TATCAGCGAATTAATCTTTG+TGG | - | chr4_1:87626991-87627010 | Msa0582030:intron | 30.0% | |
| ! | TTTTATCCTTCATTTGAACC+AGG | - | chr4_1:87627118-87627137 | Msa0582030:intron | 30.0% |
| TTTATCCTTCATTTGAACCA+GGG | - | chr4_1:87627119-87627138 | Msa0582030:intron | 30.0% | |
| AAATAGTAGTGATACAGAAC+GGG | + | chr4_1:87627193-87627212 | None:intergenic | 30.0% | |
| AAAACAGCAGAATCAAAATG+AGG | + | chr4_1:87627219-87627238 | None:intergenic | 30.0% | |
| ! | ATATATGATGTATTGGTCTG+TGG | - | chr4_1:87627359-87627378 | Msa0582030:intron | 30.0% |
| TAGATGTCATTATCTCTTGT+TGG | - | chr4_1:87627439-87627458 | Msa0582030:CDS | 30.0% | |
| TGGTTTGATTAATGCAGATA+TGG | - | chr4_1:87627459-87627478 | Msa0582030:CDS | 30.0% | |
| TAAGTTTGCCTCTTTGTAAG+AGG | + | chr4_1:87621714-87621733 | None:intergenic | 35.0% | |
| AAGATAGGTGAAAGAAGGAT+GGG | + | chr4_1:87621749-87621768 | None:intergenic | 35.0% | |
| AGATGGTTTATCATCTGGTT+TGG | + | chr4_1:87621791-87621810 | None:intergenic | 35.0% | |
| GTTGAAGATGGTTTATCATC+TGG | + | chr4_1:87621796-87621815 | None:intergenic | 35.0% | |
| GATGATAAACCATCTTCAAC+AGG | - | chr4_1:87621796-87621815 | Msa0582030:CDS | 35.0% | |
| ATACTGAATCCTGTTGAAGA+TGG | + | chr4_1:87621808-87621827 | None:intergenic | 35.0% | |
| CAGTAATTATATCCAGCGAA+CGG | + | chr4_1:87621919-87621938 | None:intergenic | 35.0% | |
| ATCAGCTACATCAGTCATTA+CGG | + | chr4_1:87621983-87622002 | None:intergenic | 35.0% | |
| GATGCTGTTCATTTATACAC+TGG | - | chr4_1:87622120-87622139 | Msa0582030:intron | 35.0% | |
| AAAAGTGAACTAACCAGTCA+AGG | + | chr4_1:87622146-87622165 | None:intergenic | 35.0% | |
| AGGGAAATTTGACTCCATAA+AGG | + | chr4_1:87622306-87622325 | None:intergenic | 35.0% | |
| AAATAAGCTAAGGTCCTGTT+TGG | - | chr4_1:87622374-87622393 | Msa0582030:intron | 35.0% | |
| !! | ATTAAGCTGTTTCTCCAAAC+AGG | + | chr4_1:87622391-87622410 | None:intergenic | 35.0% |
| ! | TTGTTTTCCTAGGTTTTCCT+AGG | - | chr4_1:87622531-87622550 | Msa0582030:intron | 35.0% |
| AGACACTTATCAGACTGTTT+AGG | + | chr4_1:87622561-87622580 | None:intergenic | 35.0% | |
| TGATAAGTGTCTATTCCAGT+AGG | - | chr4_1:87622569-87622588 | Msa0582030:intron | 35.0% | |
| ! | GCTTATTTGAAGTTACCTAC+TGG | + | chr4_1:87622587-87622606 | None:intergenic | 35.0% |
| TCAAATAAGCGAATCCAAAC+AGG | - | chr4_1:87622597-87622616 | Msa0582030:CDS | 35.0% | |
| !!! | TGATATTTGGCTTTTACCAG+CGG | - | chr4_1:87622819-87622838 | Msa0582030:intron | 35.0% |
| TCCCATACGAATATCCAAAT+TGG | - | chr4_1:87622933-87622952 | Msa0582030:intron | 35.0% | |
| !!! | AGGACCATTTTAAGTTGAAC+GGG | - | chr4_1:87622972-87622991 | Msa0582030:intron | 35.0% |
| TCATTAAAGAGCAATGTAGC+AGG | + | chr4_1:87623020-87623039 | None:intergenic | 35.0% | |
| ACTAATACTCAGTGCAGATT+AGG | - | chr4_1:87623633-87623652 | Msa0582030:intron | 35.0% | |
| CTAATACTCAGTGCAGATTA+GGG | - | chr4_1:87623634-87623653 | Msa0582030:intron | 35.0% | |
| !! | ACTTACAAGGTCGCTATTTT+AGG | - | chr4_1:87623682-87623701 | Msa0582030:intron | 35.0% |
| !! | CTTACAAGGTCGCTATTTTA+GGG | - | chr4_1:87623683-87623702 | Msa0582030:intron | 35.0% |
| CTTTCAAAAGTCTGTGCTTA+GGG | + | chr4_1:87623784-87623803 | None:intergenic | 35.0% | |
| AAATACCGTAAGCTTAGAAG+TGG | + | chr4_1:87623914-87623933 | None:intergenic | 35.0% | |
| TCTTGCGAAAAATGTAGTAG+TGG | - | chr4_1:87623960-87623979 | Msa0582030:intron | 35.0% | |
| ! | TATCCTTAACATGGGTTGAA+GGG | - | chr4_1:87624095-87624114 | Msa0582030:intron | 35.0% |
| ATGCATGTAAGTTAAGAAGC+AGG | - | chr4_1:87624385-87624404 | Msa0582030:intron | 35.0% | |
| ! | GTAGTTACGTTTTATGCAAG+AGG | - | chr4_1:87624560-87624579 | Msa0582030:intron | 35.0% |
| TGCAATGTATTAGGCTTACT+AGG | + | chr4_1:87624703-87624722 | None:intergenic | 35.0% | |
| CTTCGTGTATGACTAACAAT+TGG | + | chr4_1:87624849-87624868 | None:intergenic | 35.0% | |
| GTCGTAAGGAAGAAATAACA+TGG | + | chr4_1:87624891-87624910 | None:intergenic | 35.0% | |
| TATTTCTTCCTTACGACGAA+CGG | - | chr4_1:87624894-87624913 | Msa0582030:intron | 35.0% | |
| !! | GTGCTCCTAGTATTTTGAAA+TGG | + | chr4_1:87624988-87625007 | None:intergenic | 35.0% |
| TGATATGAGCACTTACTCAT+AGG | - | chr4_1:87625161-87625180 | Msa0582030:intron | 35.0% | |
| GAGAAATAATATTGGGAAGG+AGG | - | chr4_1:87625300-87625319 | Msa0582030:intron | 35.0% | |
| AACTGAGAGACAAGGATAAA+TGG | - | chr4_1:87625336-87625355 | Msa0582030:intron | 35.0% | |
| ! | AAATGGCTTGTGAAGAAATG+TGG | - | chr4_1:87625353-87625372 | Msa0582030:intron | 35.0% |
| AGAGAGGGAGAAATTGTATT+AGG | - | chr4_1:87625395-87625414 | Msa0582030:intron | 35.0% | |
| ! | GGAGAAATTGTATTAGGTTG+TGG | - | chr4_1:87625401-87625420 | Msa0582030:intron | 35.0% |
| ! | GAAATTGTATTAGGTTGTGG+CGG | - | chr4_1:87625404-87625423 | Msa0582030:intron | 35.0% |
| ! | AAATTGTATTAGGTTGTGGC+GGG | - | chr4_1:87625405-87625424 | Msa0582030:intron | 35.0% |
| TAGTGACAAAACTCATAGGT+GGG | + | chr4_1:87625531-87625550 | None:intergenic | 35.0% | |
| ATAGTGACAAAACTCATAGG+TGG | + | chr4_1:87625532-87625551 | None:intergenic | 35.0% | |
| GGAATAGTGACAAAACTCAT+AGG | + | chr4_1:87625535-87625554 | None:intergenic | 35.0% | |
| CACTGATACAATTCATTGGT+GGG | + | chr4_1:87625762-87625781 | None:intergenic | 35.0% | |
| ! | AGAAATTTTATGGCGAGTGT+TGG | + | chr4_1:87626167-87626186 | None:intergenic | 35.0% |
| !!! | TGGCCCTCAGTTTTTTTTTT+TGG | - | chr4_1:87626273-87626292 | Msa0582030:intron | 35.0% |
| !! | TATTTGTAGGCTTTAGCTTG+AGG | - | chr4_1:87626346-87626365 | Msa0582030:intron | 35.0% |
| !! | ATTTGTAGGCTTTAGCTTGA+GGG | - | chr4_1:87626347-87626366 | Msa0582030:intron | 35.0% |
| !! | TAAGAGTACTTTGATCTCCT+AGG | - | chr4_1:87626463-87626482 | Msa0582030:intron | 35.0% |
| TTCAAAGAGTAAGCCATTCA+TGG | - | chr4_1:87626891-87626910 | Msa0582030:intron | 35.0% | |
| TGCAGTAATTACACTAAACG+TGG | + | chr4_1:87626956-87626975 | None:intergenic | 35.0% | |
| ! | AACTAGTTTGAGCTGGTTAA+AGG | + | chr4_1:87627155-87627174 | None:intergenic | 35.0% |
| AATAGTAGTGATACAGAACG+GGG | + | chr4_1:87627192-87627211 | None:intergenic | 35.0% | |
| GTGAAACAAAAGATCCATGA+AGG | + | chr4_1:87627419-87627438 | None:intergenic | 35.0% | |
| ! | ACTCCTTTTACTCCATTGAA+GGG | - | chr4_1:87627486-87627505 | Msa0582030:CDS | 35.0% |
| TGAATAAAGAGTCCCTTCAA+TGG | + | chr4_1:87627501-87627520 | None:intergenic | 35.0% | |
| TTGAAGGGACTCTTTATTCA+AGG | - | chr4_1:87627501-87627520 | Msa0582030:CDS | 35.0% | |
| AAAATGCCATCATTCAAGCA+TGG | - | chr4_1:87627675-87627694 | Msa0582030:CDS | 35.0% | |
| ! | GGAAAAATGTACAAAGCATC+TGG | + | chr4_1:87627732-87627751 | None:intergenic | 35.0% |
| AATGACAAAGCAGTCAAAAC+TGG | + | chr4_1:87627753-87627772 | None:intergenic | 35.0% | |
| GAGGCAAACTTATAGATCGA+AGG | - | chr4_1:87621722-87621741 | Msa0582030:CDS | 40.0% | |
| GAAGATAGGTGAAAGAAGGA+TGG | + | chr4_1:87621750-87621769 | None:intergenic | 40.0% | |
| TGGAGAAGATAGGTGAAAGA+AGG | + | chr4_1:87621754-87621773 | None:intergenic | 40.0% | |
| !! | ATCTGGTTTGGTTTCATCGT+CGG | + | chr4_1:87621779-87621798 | None:intergenic | 40.0% |
| GGTTCGAAAGGATCTTGATT+GGG | + | chr4_1:87621839-87621858 | None:intergenic | 40.0% | |
| AGGTTCGAAAGGATCTTGAT+TGG | + | chr4_1:87621840-87621859 | None:intergenic | 40.0% | |
| TCCTTTCGAACCTCTCTTAA+CGG | - | chr4_1:87621847-87621866 | Msa0582030:intron | 40.0% | |
| TCTCTTAACGGAGGATCAAT+CGG | - | chr4_1:87621859-87621878 | Msa0582030:intron | 40.0% | |
| !!! | TGTTTTAACTGATACCACCG+TGG | - | chr4_1:87622002-87622021 | Msa0582030:intron | 40.0% |
| ATAAGAATCAGCAGCAGCAA+TGG | + | chr4_1:87622070-87622089 | None:intergenic | 40.0% | |
| AGCATCTATGACATACTGCA+AGG | + | chr4_1:87622106-87622125 | None:intergenic | 40.0% | |
| !! | ATTTATACACTGGCCTTGAC+TGG | - | chr4_1:87622130-87622149 | Msa0582030:intron | 40.0% |
| AGACTGTTTCGAAGAGCTTA+GGG | + | chr4_1:87622325-87622344 | None:intergenic | 40.0% | |
| TAGACTGTTTCGAAGAGCTT+AGG | + | chr4_1:87622326-87622345 | None:intergenic | 40.0% | |
| AGGAAAACCTAGGAAAACCT+AGG | + | chr4_1:87622541-87622560 | None:intergenic | 40.0% | |
| CAGACTGTTTAGGAAAACCT+AGG | + | chr4_1:87622551-87622570 | None:intergenic | 40.0% | |
| ACTATTGACATAAGCCCTTG+TGG | + | chr4_1:87622683-87622702 | None:intergenic | 40.0% | |
| !!! | GATATTTGGCTTTTACCAGC+GGG | - | chr4_1:87622820-87622839 | Msa0582030:intron | 40.0% |
| CCTTTCAAAAGTCTGTGCTT+AGG | + | chr4_1:87623785-87623804 | None:intergenic | 40.0% | |
| ! | CCTAAGCACAGACTTTTGAA+AGG | - | chr4_1:87623782-87623801 | Msa0582030:intron | 40.0% |
| ATTGCTCCTTTGTATCAGGT+GGG | - | chr4_1:87623819-87623838 | Msa0582030:intron | 40.0% | |
| TCAAAACAGAACAACGACAG+AGG | + | chr4_1:87624008-87624027 | None:intergenic | 40.0% | |
| AAAGTGGAAAAGGGAAACCA+GGG | + | chr4_1:87624066-87624085 | None:intergenic | 40.0% | |
| ! | GTATCCTTAACATGGGTTGA+AGG | - | chr4_1:87624094-87624113 | Msa0582030:intron | 40.0% |
| CATCGGGCCTTTATTCAAAA+TGG | + | chr4_1:87624160-87624179 | None:intergenic | 40.0% | |
| GGAACAGATAAAGGAAGAGA+TGG | - | chr4_1:87624278-87624297 | Msa0582030:intron | 40.0% | |
| CAGATAAAGGAAGAGATGGA+CGG | - | chr4_1:87624282-87624301 | Msa0582030:intron | 40.0% | |
| AGATAAAGGAAGAGATGGAC+GGG | - | chr4_1:87624283-87624302 | Msa0582030:intron | 40.0% | |
| GTCACAGAACAAGTATCACT+GGG | + | chr4_1:87624614-87624633 | None:intergenic | 40.0% | |
| ! | TTCTGTGACGACCCAATTTT+AGG | - | chr4_1:87624625-87624644 | Msa0582030:intron | 40.0% |
| AAGAGAGATAATGCATCCTG+CGG | + | chr4_1:87624947-87624966 | None:intergenic | 40.0% | |
| CATAGGTTGCATTCTCTCAT+CGG | - | chr4_1:87625107-87625126 | Msa0582030:intron | 40.0% | |
| GCTTGTGAAGAAATGTGGTA+GGG | - | chr4_1:87625358-87625377 | Msa0582030:intron | 40.0% | |
| CTTGTGAAGAAATGTGGTAG+GGG | - | chr4_1:87625359-87625378 | Msa0582030:intron | 40.0% | |
| TTGTGAAGAAATGTGGTAGG+GGG | - | chr4_1:87625360-87625379 | Msa0582030:intron | 40.0% | |
| GGGTTTACATGAGAAAGAGA+GGG | - | chr4_1:87625380-87625399 | Msa0582030:intron | 40.0% | |
| ! | AATTGTATTAGGTTGTGGCG+GGG | - | chr4_1:87625406-87625425 | Msa0582030:intron | 40.0% |
| ! | AACTAGTAAGTGATTCGGCA+CGG | + | chr4_1:87625690-87625709 | None:intergenic | 40.0% |
| ATTCCTTCTGACAACCATTC+TGG | - | chr4_1:87625723-87625742 | Msa0582030:intron | 40.0% | |
| CCACTGATACAATTCATTGG+TGG | + | chr4_1:87625763-87625782 | None:intergenic | 40.0% | |
| CCACCAATGAATTGTATCAG+TGG | - | chr4_1:87625760-87625779 | Msa0582030:intron | 40.0% | |
| CCACCACTGATACAATTCAT+TGG | + | chr4_1:87625766-87625785 | None:intergenic | 40.0% | |
| CCAATGAATTGTATCAGTGG+TGG | - | chr4_1:87625763-87625782 | Msa0582030:intron | 40.0% | |
| ! | GTGGCTTCTTTTCTCATTGA+TGG | - | chr4_1:87625782-87625801 | Msa0582030:intron | 40.0% |
| ATTGCATTAGGGAAGATGAC+GGG | + | chr4_1:87625835-87625854 | None:intergenic | 40.0% | |
| CATTGCATTAGGGAAGATGA+CGG | + | chr4_1:87625836-87625855 | None:intergenic | 40.0% | |
| TGAGTTAGGCCATTGCATTA+GGG | + | chr4_1:87625846-87625865 | None:intergenic | 40.0% | |
| ATGAGTTAGGCCATTGCATT+AGG | + | chr4_1:87625847-87625866 | None:intergenic | 40.0% | |
| TGGGTTTGTAAGGATGAGTT+AGG | + | chr4_1:87625860-87625879 | None:intergenic | 40.0% | |
| ACTTACAAGCTGGGTTTGTA+AGG | + | chr4_1:87625870-87625889 | None:intergenic | 40.0% | |
| CTTCCAAATGCGATTTGAGA+AGG | - | chr4_1:87625895-87625914 | Msa0582030:intron | 40.0% | |
| CATCCTTCTCAAATCGCATT+TGG | + | chr4_1:87625901-87625920 | None:intergenic | 40.0% | |
| CAAATGCGATTTGAGAAGGA+TGG | - | chr4_1:87625899-87625918 | Msa0582030:intron | 40.0% | |
| GTGAGCAATCAAACAAAGCA+AGG | + | chr4_1:87625926-87625945 | None:intergenic | 40.0% | |
| TGCCATATCTCTAAGCAATG+TGG | - | chr4_1:87626031-87626050 | Msa0582030:intron | 40.0% | |
| GCCATATCTCTAAGCAATGT+GGG | - | chr4_1:87626032-87626051 | Msa0582030:intron | 40.0% | |
| TCCCACATTGCTTAGAGATA+TGG | + | chr4_1:87626036-87626055 | None:intergenic | 40.0% | |
| !! | CTTCATGTGTTGGTTTGAAG+GGG | + | chr4_1:87626068-87626087 | None:intergenic | 40.0% |
| !! | CCTTCATGTGTTGGTTTGAA+GGG | + | chr4_1:87626069-87626088 | None:intergenic | 40.0% |
| !! | ACCTTCATGTGTTGGTTTGA+AGG | + | chr4_1:87626070-87626089 | None:intergenic | 40.0% |
| GCAACTCAAATGGTGCAATT+AGG | - | chr4_1:87626109-87626128 | Msa0582030:intron | 40.0% | |
| ACTCAAATGGTGCAATTAGG+TGG | - | chr4_1:87626112-87626131 | Msa0582030:intron | 40.0% | |
| GGGATCAGATGTCTGAAAAA+TGG | + | chr4_1:87626832-87626851 | None:intergenic | 40.0% | |
| ! | ATCTTTGTGGTGACTTGTGA+TGG | - | chr4_1:87627004-87627023 | Msa0582030:intron | 40.0% |
| TTTGAGCTGGTTAAAGGAGT+TGG | + | chr4_1:87627149-87627168 | None:intergenic | 40.0% | |
| ATAGTAGTGATACAGAACGG+GGG | + | chr4_1:87627191-87627210 | None:intergenic | 40.0% | |
| ! | GACTCCTTTTACTCCATTGA+AGG | - | chr4_1:87627485-87627504 | Msa0582030:CDS | 40.0% |
| AGTCCCTTCAATGGAGTAAA+AGG | + | chr4_1:87627492-87627511 | None:intergenic | 40.0% | |
| TACAAGTAGGAGGGATATTG+GGG | + | chr4_1:87627570-87627589 | None:intergenic | 40.0% | |
| CTACAAGTAGGAGGGATATT+GGG | + | chr4_1:87627571-87627590 | None:intergenic | 40.0% | |
| AGACGTTGCCTCTTACAAAG+AGG | - | chr4_1:87621703-87621722 | Msa0582030:CDS | 45.0% | |
| TCCGTTAAGAGAGGTTCGAA+AGG | + | chr4_1:87621851-87621870 | None:intergenic | 45.0% | |
| TTTCGAACCTCTCTTAACGG+AGG | - | chr4_1:87621850-87621869 | Msa0582030:intron | 45.0% | |
| GATTGATCCTCCGTTAAGAG+AGG | + | chr4_1:87621860-87621879 | None:intergenic | 45.0% | |
| TATATCCAGCGAACGGTGAA+AGG | + | chr4_1:87621912-87621931 | None:intergenic | 45.0% | |
| TTTAACTGATACCACCGTGG+AGG | - | chr4_1:87622005-87622024 | Msa0582030:intron | 45.0% | |
| AATGGCAACTTCGCTAACAC+CGG | + | chr4_1:87622052-87622071 | None:intergenic | 45.0% | |
| ACATACTGCAAGGCTTGAAC+AGG | + | chr4_1:87622096-87622115 | None:intergenic | 45.0% | |
| TGTTTGAATCGGGACCTGTT+TGG | + | chr4_1:87622614-87622633 | None:intergenic | 45.0% | |
| CCTGATACAAAGGAGCAATG+CGG | + | chr4_1:87623818-87623837 | None:intergenic | 45.0% | |
| CATTGCTCCTTTGTATCAGG+TGG | - | chr4_1:87623818-87623837 | Msa0582030:intron | 45.0% | |
| CACGAGAGTTGTTAGAGCTA+TGG | + | chr4_1:87623848-87623867 | None:intergenic | 45.0% | |
| CAAGGCCACTTCTAAGCTTA+CGG | - | chr4_1:87623906-87623925 | Msa0582030:intron | 45.0% | |
| ! | TTTGGAGTGAAATTTCCCCC+TGG | - | chr4_1:87624046-87624065 | Msa0582030:intron | 45.0% |
| AAGTGGAAAAGGGAAACCAG+GGG | + | chr4_1:87624065-87624084 | None:intergenic | 45.0% | |
| CAAAGTGGAAAAGGGAAACC+AGG | + | chr4_1:87624067-87624086 | None:intergenic | 45.0% | |
| AAGCCCTTCAACCCATGTTA+AGG | + | chr4_1:87624101-87624120 | None:intergenic | 45.0% | |
| ! | GGAACAAAATGGTGACGTGA+GGG | + | chr4_1:87624127-87624146 | None:intergenic | 45.0% |
| ! | AGGAACAAAATGGTGACGTG+AGG | + | chr4_1:87624128-87624147 | None:intergenic | 45.0% |
| ACGCACGAAACAGTAAGCTT+AGG | + | chr4_1:87624234-87624253 | None:intergenic | 45.0% | |
| TCCTTTATCTGTTCCAAGCG+AGG | + | chr4_1:87624273-87624292 | None:intergenic | 45.0% | |
| GAACAAGTATCACTGGGATC+AGG | + | chr4_1:87624608-87624627 | None:intergenic | 45.0% | |
| CGTCACAGAACAAGTATCAC+TGG | + | chr4_1:87624615-87624634 | None:intergenic | 45.0% | |
| GAAGTTCCACATGTGCACAT+AGG | - | chr4_1:87624865-87624884 | Msa0582030:intron | 45.0% | |
| AGAGAGATAATGCATCCTGC+GGG | + | chr4_1:87624946-87624965 | None:intergenic | 45.0% | |
| ! | GGAGCACTTAACTCATAGAC+TGG | - | chr4_1:87625027-87625046 | Msa0582030:intron | 45.0% |
| CGATGAGAGAATGCAACCTA+TGG | + | chr4_1:87625109-87625128 | None:intergenic | 45.0% | |
| GGCTTGTGAAGAAATGTGGT+AGG | - | chr4_1:87625357-87625376 | Msa0582030:intron | 45.0% | |
| GGGGTTTACATGAGAAAGAG+AGG | - | chr4_1:87625379-87625398 | Msa0582030:intron | 45.0% | |
| ! | ATTGTATTAGGTTGTGGCGG+GGG | - | chr4_1:87625407-87625426 | Msa0582030:intron | 45.0% |
| ! | TACTCGATTATGGGCTGTCT+AGG | + | chr4_1:87625507-87625526 | None:intergenic | 45.0% |
| !! | TAGGTGGGCTACTCGATTAT+GGG | + | chr4_1:87625516-87625535 | None:intergenic | 45.0% |
| !! | ATAGGTGGGCTACTCGATTA+TGG | + | chr4_1:87625517-87625536 | None:intergenic | 45.0% |
| ! | GACTCTAGAGAACACTTCAG+TGG | + | chr4_1:87625556-87625575 | None:intergenic | 45.0% |
| TACAACTGTCCTTCCACTCT+CGG | + | chr4_1:87625578-87625597 | None:intergenic | 45.0% | |
| TCACCAGAATGGTTGTCAGA+AGG | + | chr4_1:87625729-87625748 | None:intergenic | 45.0% | |
| GAGCAAAATCGTCACCAGAA+TGG | + | chr4_1:87625740-87625759 | None:intergenic | 45.0% | |
| CGTCATCTTCCCTAATGCAA+TGG | - | chr4_1:87625834-87625853 | Msa0582030:intron | 45.0% | |
| CAAACCCAGCTTGTAAGTTG+AGG | - | chr4_1:87625872-87625891 | Msa0582030:intron | 45.0% | |
| GAAGCCTCAACTTACAAGCT+GGG | + | chr4_1:87625879-87625898 | None:intergenic | 45.0% | |
| CTAACTCATCCTTACAACCC+CGG | - | chr4_1:87625966-87625985 | Msa0582030:intron | 45.0% | |
| CCCTTCAAACCAACACATGA+AGG | - | chr4_1:87626066-87626085 | Msa0582030:intron | 45.0% | |
| CCTTCAACACCTTCATGTGT+TGG | + | chr4_1:87626078-87626097 | None:intergenic | 45.0% | |
| !! | CCAACACATGAAGGTGTTGA+AGG | - | chr4_1:87626075-87626094 | Msa0582030:intron | 45.0% |
| TGCAATGGAGGCAACTCAAA+TGG | - | chr4_1:87626099-87626118 | Msa0582030:intron | 45.0% | |
| AATGGTGCAATTAGGTGGCT+AGG | - | chr4_1:87626117-87626136 | Msa0582030:intron | 45.0% | |
| ATGGTGCAATTAGGTGGCTA+GGG | - | chr4_1:87626118-87626137 | Msa0582030:intron | 45.0% | |
| GGGCCACCAAAAACAATAGT+TGG | + | chr4_1:87626259-87626278 | None:intergenic | 45.0% | |
| ! | TTTTCAGACATCTGATCCCG+CGG | - | chr4_1:87626833-87626852 | Msa0582030:intron | 45.0% |
| !! | TGATACAGAACGGGGGTATT+GGG | + | chr4_1:87627184-87627203 | None:intergenic | 45.0% |
| ! | TGTATTGGTCTGTGGCTCTA+AGG | - | chr4_1:87627367-87627386 | Msa0582030:intron | 45.0% |
| CCTACAAGTAGGAGGGATAT+TGG | + | chr4_1:87627572-87627591 | None:intergenic | 45.0% | |
| CCAATATCCCTCCTACTTGT+AGG | - | chr4_1:87627569-87627588 | Msa0582030:CDS | 45.0% | |
| TCAGACTCCTACAAGTAGGA+GGG | + | chr4_1:87627579-87627598 | None:intergenic | 45.0% | |
| ATGCCATCATTCAAGCATGG+TGG | - | chr4_1:87627678-87627697 | Msa0582030:CDS | 45.0% | |
| !! | AAAATTATAAGTAAATTTAT+CGG | + | chr4_1:87623337-87623356 | None:intergenic | 5.0% |
| ATCGTCGGTGTGGAGAAGAT+AGG | + | chr4_1:87621764-87621783 | None:intergenic | 50.0% | |
| ! | GTTTGGTTTCATCGTCGGTG+TGG | + | chr4_1:87621774-87621793 | None:intergenic | 50.0% |
| AAACACCTTTCACCGTTCGC+TGG | - | chr4_1:87621904-87621923 | Msa0582030:intron | 50.0% | |
| AACTTCGCTAACACCGGAAG+CGG | + | chr4_1:87622046-87622065 | None:intergenic | 50.0% | |
| !! | TTGGCTTTTACCAGCGGGTA+TGG | - | chr4_1:87622825-87622844 | Msa0582030:intron | 50.0% |
| CTGTAGAAATCCATACCCGC+TGG | + | chr4_1:87622838-87622857 | None:intergenic | 50.0% | |
| CCGCATTGCTCCTTTGTATC+AGG | - | chr4_1:87623815-87623834 | Msa0582030:intron | 50.0% | |
| AACAGAACAACGACAGAGGC+AGG | + | chr4_1:87624004-87624023 | None:intergenic | 50.0% | |
| AGTGGAAAAGGGAAACCAGG+GGG | + | chr4_1:87624064-87624083 | None:intergenic | 50.0% | |
| GCCTCGCTTGGAACAGATAA+AGG | - | chr4_1:87624269-87624288 | Msa0582030:intron | 50.0% | |
| AAAGGAAGAGATGGACGGGA+AGG | - | chr4_1:87624287-87624306 | Msa0582030:intron | 50.0% | |
| AGAGATGGACGGGAAGGTAA+TGG | - | chr4_1:87624293-87624312 | Msa0582030:intron | 50.0% | |
| ACATGGCCTATGTGCACATG+TGG | + | chr4_1:87624874-87624893 | None:intergenic | 50.0% | |
| TGTGGAATCCGTTCGTCGTA+AGG | + | chr4_1:87624905-87624924 | None:intergenic | 50.0% | |
| ! | ACGACGAACGGATTCCACAT+AGG | - | chr4_1:87624906-87624925 | Msa0582030:intron | 50.0% |
| CTAAGTACTCGTGGCCTATG+TGG | + | chr4_1:87624923-87624942 | None:intergenic | 50.0% | |
| TCTCTCATCGGTGCAGCAAA+TGG | - | chr4_1:87625119-87625138 | Msa0582030:intron | 50.0% | |
| TATTGGGAAGGAGGTGAGAG+TGG | - | chr4_1:87625309-87625328 | Msa0582030:intron | 50.0% | |
| GTGGTGTGAACTGAGAGACA+AGG | - | chr4_1:87625328-87625347 | Msa0582030:intron | 50.0% | |
| !! | TGTTCTCTAGAGTCCGAGAG+TGG | - | chr4_1:87625562-87625581 | Msa0582030:CDS | 50.0% |
| GGAAGCCTCAACTTACAAGC+TGG | + | chr4_1:87625880-87625899 | None:intergenic | 50.0% | |
| CGGGGTTGTAAGGATGAGTT+AGG | + | chr4_1:87625968-87625987 | None:intergenic | 50.0% | |
| CCTTTCAATCCGGGGTTGTA+AGG | + | chr4_1:87625978-87625997 | None:intergenic | 50.0% | |
| CCTTACAACCCCGGATTGAA+AGG | - | chr4_1:87625975-87625994 | Msa0582030:intron | 50.0% | |
| AGACCTCACCTTTCAATCCG+GGG | + | chr4_1:87625986-87626005 | None:intergenic | 50.0% | |
| CAGACCTCACCTTTCAATCC+GGG | + | chr4_1:87625987-87626006 | None:intergenic | 50.0% | |
| GCAGACCTCACCTTTCAATC+CGG | + | chr4_1:87625988-87626007 | None:intergenic | 50.0% | |
| !! | CATGTGTTGGTTTGAAGGGG+TGG | + | chr4_1:87626065-87626084 | None:intergenic | 50.0% |
| !! | GAAGGTGTTGAAGGCTGCAA+TGG | - | chr4_1:87626084-87626103 | Msa0582030:intron | 50.0% |
| TGGTGCAATTAGGTGGCTAG+GGG | - | chr4_1:87626119-87626138 | Msa0582030:intron | 50.0% | |
| GAGGACCCTGGTTCAAATGA+AGG | + | chr4_1:87627127-87627146 | None:intergenic | 50.0% | |
| TTAAAGGAGTTGGAGGACCC+TGG | + | chr4_1:87627139-87627158 | None:intergenic | 50.0% | |
| GAGCTGGTTAAAGGAGTTGG+AGG | + | chr4_1:87627146-87627165 | None:intergenic | 50.0% | |
| ! | GTAGGGCAACTAGTTTGAGC+TGG | + | chr4_1:87627162-87627181 | None:intergenic | 50.0% |
| ! | GTGATACAGAACGGGGGTAT+TGG | + | chr4_1:87627185-87627204 | None:intergenic | 50.0% |
| CTCAGACTCCTACAAGTAGG+AGG | + | chr4_1:87627580-87627599 | None:intergenic | 50.0% | |
| CTCCTACTTGTAGGAGTCTG+AGG | - | chr4_1:87627578-87627597 | Msa0582030:CDS | 50.0% | |
| CTCCTCAGACTCCTACAAGT+AGG | + | chr4_1:87627583-87627602 | None:intergenic | 50.0% | |
| GCTCCACCATGCTTGAATGA+TGG | + | chr4_1:87627684-87627703 | None:intergenic | 50.0% | |
| ! | TCAAGCATGGTGGAGCTTTC+TGG | - | chr4_1:87627688-87627707 | Msa0582030:CDS | 50.0% |
| CTGAGAAGTCACAGCCTCCA+CGG | + | chr4_1:87622022-87622041 | None:intergenic | 55.0% | |
| GCTCCTTTGTATCAGGTGGG+CGG | - | chr4_1:87623822-87623841 | Msa0582030:intron | 55.0% | |
| !! | CTCTAGAGTCCGAGAGTGGA+AGG | - | chr4_1:87625566-87625585 | Msa0582030:CDS | 55.0% |
| CAACCCCGGATTGAAAGGTG+AGG | - | chr4_1:87625980-87625999 | Msa0582030:intron | 55.0% | |
| ! | GGTGTTGAAGGCTGCAATGG+AGG | - | chr4_1:87626087-87626106 | Msa0582030:intron | 55.0% |
| GGTGCAATTAGGTGGCTAGG+GGG | - | chr4_1:87626120-87626139 | Msa0582030:intron | 55.0% | |
| GTGCAATTAGGTGGCTAGGG+GGG | - | chr4_1:87626121-87626140 | Msa0582030:intron | 55.0% | |
| TGCAATTAGGTGGCTAGGGG+GGG | - | chr4_1:87626122-87626141 | Msa0582030:intron | 55.0% | |
| CTGTTGCTCAAGGTCAGGAG+AGG | - | chr4_1:87626856-87626875 | Msa0582030:intron | 55.0% | |
| !! | CAGAACGGGGGTATTGGGTA+GGG | + | chr4_1:87627179-87627198 | None:intergenic | 55.0% |
| !! | ACAGAACGGGGGTATTGGGT+AGG | + | chr4_1:87627180-87627199 | None:intergenic | 55.0% |
| AGAAGTCACAGCCTCCACGG+TGG | + | chr4_1:87622019-87622038 | None:intergenic | 60.0% | |
| CGTGGAGGCTGTGACTTCTC+AGG | - | chr4_1:87622020-87622039 | Msa0582030:intron | 60.0% | |
| GTGACTTCTCAGGCCGCTTC+CGG | - | chr4_1:87622030-87622049 | Msa0582030:intron | 60.0% | |
| TGGCCGCCCACCTGATACAA+AGG | + | chr4_1:87623828-87623847 | None:intergenic | 60.0% | |
| CGTGCGTGCTGCAGCTTATG+AGG | - | chr4_1:87624247-87624266 | Msa0582030:intron | 60.0% | |
| GCAGCTTATGAGGCCTCGCT+TGG | - | chr4_1:87624257-87624276 | Msa0582030:intron | 60.0% | |
| ! | TCCTGCGGGCTAAGTACTCG+TGG | + | chr4_1:87624932-87624951 | None:intergenic | 60.0% |
| ACGGCAGACGACTGAAGTGG+CGG | + | chr4_1:87625671-87625690 | None:intergenic | 60.0% | |
| ATGGCCTCAGCCTCTTTCCC+AGG | - | chr4_1:87625801-87625820 | Msa0582030:intron | 60.0% | |
| TGCACCTGGGAAAGAGGCTG+AGG | + | chr4_1:87625808-87625827 | None:intergenic | 60.0% | |
| GGCTAGTGCACCTGGGAAAG+AGG | + | chr4_1:87625814-87625833 | None:intergenic | 60.0% | |
| !! | GATGACGGGCTAGTGCACCT+GGG | + | chr4_1:87625821-87625840 | None:intergenic | 60.0% |
| !! | AGATGACGGGCTAGTGCACC+TGG | + | chr4_1:87625822-87625841 | None:intergenic | 60.0% |
| TGACCTTGAGCAACAGCCGC+GGG | + | chr4_1:87626852-87626871 | None:intergenic | 60.0% | |
| CTGACCTTGAGCAACAGCCG+CGG | + | chr4_1:87626853-87626872 | None:intergenic | 60.0% | |
| GCCACGAGTACTTAGCCCGC+AGG | - | chr4_1:87624928-87624947 | Msa0582030:intron | 65.0% | |
| ! | GGTTGTGGCGGGGGTTGTGT+TGG | - | chr4_1:87625416-87625435 | Msa0582030:intron | 65.0% |
| GACTGAAGTGGCGGCGAAGG+AGG | + | chr4_1:87625662-87625681 | None:intergenic | 65.0% | |
| GACGACTGAAGTGGCGGCGA+AGG | + | chr4_1:87625665-87625684 | None:intergenic | 65.0% | |
| GGCACGGCAGACGACTGAAG+TGG | + | chr4_1:87625674-87625693 | None:intergenic | 65.0% | |
| ! | TAGGGGGGGCGCAATGAAGG+CGG | - | chr4_1:87626136-87626155 | Msa0582030:intron | 65.0% |
| GATCCCGCGGCTGTTGCTCA+AGG | - | chr4_1:87626846-87626865 | Msa0582030:intron | 65.0% | |
| CGCGGCTGTTGCTCAAGGTC+AGG | - | chr4_1:87626851-87626870 | Msa0582030:intron | 65.0% | |
| ! | GGCTAGGGGGGGCGCAATGA+AGG | - | chr4_1:87626133-87626152 | Msa0582030:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 87621694 | 87627788 | 87621694 | ID=Msa0582030;Name=Msa0582030 |
| chr4_1 | mRNA | 87621694 | 87627788 | 87621694 | ID=Msa0582030-mRNA-1;Parent=Msa0582030;Name=Msa0582030-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0.6|0.66|1|1|0.83|6|0|274 |
| chr4_1 | exon | 87627373 | 87627788 | 87627373 | ID=Msa0582030-mRNA-1:exon:32614;Parent=Msa0582030-mRNA-1 |
| chr4_1 | exon | 87625555 | 87625645 | 87625555 | ID=Msa0582030-mRNA-1:exon:32613;Parent=Msa0582030-mRNA-1 |
| chr4_1 | exon | 87625174 | 87625221 | 87625174 | ID=Msa0582030-mRNA-1:exon:32612;Parent=Msa0582030-mRNA-1 |
| chr4_1 | exon | 87622584 | 87622642 | 87622584 | ID=Msa0582030-mRNA-1:exon:32611;Parent=Msa0582030-mRNA-1 |
| chr4_1 | exon | 87621931 | 87622006 | 87621931 | ID=Msa0582030-mRNA-1:exon:32610;Parent=Msa0582030-mRNA-1 |
| chr4_1 | exon | 87621694 | 87621825 | 87621694 | ID=Msa0582030-mRNA-1:exon:32609;Parent=Msa0582030-mRNA-1 |
| chr4_1 | CDS | 87627373 | 87627788 | 87627373 | ID=Msa0582030-mRNA-1:cds;Parent=Msa0582030-mRNA-1 |
| chr4_1 | CDS | 87625555 | 87625645 | 87625555 | ID=Msa0582030-mRNA-1:cds;Parent=Msa0582030-mRNA-1 |
| chr4_1 | CDS | 87625174 | 87625221 | 87625174 | ID=Msa0582030-mRNA-1:cds;Parent=Msa0582030-mRNA-1 |
| chr4_1 | CDS | 87622584 | 87622642 | 87622584 | ID=Msa0582030-mRNA-1:cds;Parent=Msa0582030-mRNA-1 |
| chr4_1 | CDS | 87621931 | 87622006 | 87621931 | ID=Msa0582030-mRNA-1:cds;Parent=Msa0582030-mRNA-1 |
| chr4_1 | CDS | 87621694 | 87621825 | 87621694 | ID=Msa0582030-mRNA-1:cds;Parent=Msa0582030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
