AlfalfaGEDB | Msa0582120

M. sativa cultivar zhongmu-4 / Msa0582120

KEGG: K00558
GO: GO:0000003 GO:0000278 GO:0000281 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006349 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008356 GO:0009292 GO:0009294 GO:0009790 GO:0009791 GO:0009793 GO:0009909 GO:0009910 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010216 GO:0010424 GO:0010468 GO:0016740 GO:0016741 GO:0019222 GO:0022402 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0032776 GO:0034641 GO:0040029 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0044764 GO:0046483 GO:0048316 GO:0048519 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0051301 GO:0051704 GO:0060255 GO:0061458 GO:0061640 GO:0065007 GO:0071514 GO:0071704 GO:0090304 GO:1901360 GO:1903047 GO:2000026 GO:2000241 GO:2000242
PFAM: PF12047.11

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0582120	XP_039683076.1	89.452	1479	49	6	1	1375	33	1508	0.0	2709

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0582120	sp\|Q7Y1I7\|DNM1A_ORYSJ	55.948	1471	522	22	5	1375	40	1484	0.0	1628

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0582120	Msa0674230	0.818518	1.879619e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0582120	MtrunA17_Chr6g0477371	89.452	1479	49	6	1	1375	33	1508	0.0	2707
Msa0582120	MtrunA17_Chr2g0302601	89.204	1482	49	7	2	1375	39	1517	0.0	2691
Msa0582120	MtrunA17_Chr4g0017221	84.993	1526	44	6	1	1375	1	1492	0.0	2607
Msa0582120	MtrunA17_Chr3g0087081	82.284	683	53	6	462	1078	1	681	0.0	1097
Msa0582120	MtrunA17_Chr3g0087141	90.566	212	16	2	1	212	1	208	3.18e-122	379
Msa0582120	MtrunA17_Chr3g0087091	94.479	163	9	0	276	438	1	163	6.18e-101	319
Msa0582120	MtrunA17_Chr3g0087051	99.020	102	1	0	1274	1375	10	111	1.01e-68	228
Msa0582120	MtrunA17_Chr8g0369361	33.038	339	154	9	1099	1375	392	719	1.78e-44	174
Msa0582120	MtrunA17_Chr6g0486931	32.432	333	166	9	1097	1375	534	861	1.46e-41	166
Msa0582120	MtrunA17_Chr6g0484831	30.838	334	167	9	1099	1375	437	763	1.09e-36	150

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0582120	AT4G08990.1	55.376	1488	520	21	3	1375	5	1463	0.0	1618
Msa0582120	AT4G13610.1	53.632	1363	466	18	118	1375	59	1360	0.0	1415
Msa0582120	AT5G49160.1	63.158	760	216	4	678	1375	728	1485	0.0	991
Msa0582120	AT5G49160.1	58.939	660	250	11	3	653	8	655	0.0	724
Msa0582120	AT5G49160.2	63.158	760	216	4	678	1375	640	1397	0.0	990
Msa0582120	AT5G49160.2	51.977	354	149	8	3	343	8	353	1.45e-88	317
Msa0582120	AT5G49160.2	61.441	236	84	3	419	653	338	567	5.39e-77	281
Msa0582120	AT4G14140.3	59.363	753	233	6	692	1375	722	1470	0.0	919
Msa0582120	AT4G14140.1	59.363	753	233	6	692	1375	722	1470	0.0	919
Msa0582120	AT4G14140.2	54.044	779	259	9	692	1375	722	1496	0.0	832

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Find 347 sgRNAs with CRISPR-Local

Find 539 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCGTATTGAAAACTGCA+AGG	0.648979	4_2:-45969	Msa0582120:CDS
AAACTAACAAAGTCTGCTGG+TGG	0.593444	4_2:-47207	Msa0582120:CDS
AAAGAATGGATGATTGAATT+TGG	0.142848	4_2:-46388	Msa0582120:CDS
AAAGACATTATGGAAGATTC+CGG	0.352616	4_2:+44222	None:intergenic
AAAGCTAGCAAGACTGTTGC+AGG	0.371615	4_2:-46842	Msa0582120:CDS
AAAGCTGATAAACAAAATAT+GGG	0.431604	4_2:-45569	Msa0582120:CDS
AAAGGATGATGATGATGAGG+CGG	0.608814	4_2:-45488	Msa0582120:CDS
AAAGTACTTGCTACCACTCA+TGG	0.478979	4_2:+47137	None:intergenic
AAATCAACTTGCCCAGGCAA+GGG	0.581528	4_2:+42773	None:intergenic
AACAGGGGCCATTGCTGCCC+TGG	0.395595	4_2:+45627	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCAAAATAGAAGGACAAAAA+GGG	+	chr4_2:40882-40901	None:intergenic	30.0%
TGCAAAATAGAAGGACAAAA+AGG	+	chr4_2:40883-40902	None:intergenic	30.0%
AACCAAGGAAAGTAATGTAA+AGG	+	chr4_2:40979-40998	None:intergenic	30.0%
CATATTCGATAATGAAACCA+AGG	+	chr4_2:40994-41013	None:intergenic	30.0%
TGCAGCAAGTAAAAATTTCA+AGG	-	chr4_2:41192-41211	Msa0582120:intron	30.0%
AAGATCAGACTTATCAGATT+TGG	+	chr4_2:41230-41249	None:intergenic	30.0%
TTTATCCTTCATGATGAATC+TGG	-	chr4_2:41349-41368	Msa0582120:intron	30.0%
AAAAAACTAACAAAGTCTGC+TGG	-	chr4_2:41652-41671	Msa0582120:intron	30.0%
ATTCATCAAGACTTATGTCA+GGG	+	chr4_2:41684-41703	None:intergenic	30.0%
AATTCATCAAGACTTATGTC+AGG	+	chr4_2:41685-41704	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	40780	48104	40780	ID=Msa0582120;Name=Msa0582120
chr4_2	mRNA	40780	48104	40780	ID=Msa0582120-mRNA-1;Parent=Msa0582120;Name=Msa0582120-mRNA-1;_AED=0.07;_eAED=0.07;_QI=320\|0.66\|0.61\|1\|0.91\|0.92\|13\|148\|1408
chr4_2	exon	40780	41021	40780	ID=Msa0582120-mRNA-1:exon:23;Parent=Msa0582120-mRNA-1
chr4_2	exon	41407	41633	41407	ID=Msa0582120-mRNA-1:exon:22;Parent=Msa0582120-mRNA-1
chr4_2	exon	41716	41799	41716	ID=Msa0582120-mRNA-1:exon:21;Parent=Msa0582120-mRNA-1
chr4_2	exon	42087	42365	42087	ID=Msa0582120-mRNA-1:exon:20;Parent=Msa0582120-mRNA-1
chr4_2	exon	42465	42662	42465	ID=Msa0582120-mRNA-1:exon:19;Parent=Msa0582120-mRNA-1
chr4_2	exon	42748	42895	42748	ID=Msa0582120-mRNA-1:exon:18;Parent=Msa0582120-mRNA-1
chr4_2	exon	42968	43079	42968	ID=Msa0582120-mRNA-1:exon:17;Parent=Msa0582120-mRNA-1
chr4_2	exon	43216	43414	43216	ID=Msa0582120-mRNA-1:exon:16;Parent=Msa0582120-mRNA-1
chr4_2	exon	44177	44341	44177	ID=Msa0582120-mRNA-1:exon:15;Parent=Msa0582120-mRNA-1
chr4_2	exon	44522	44704	44522	ID=Msa0582120-mRNA-1:exon:14;Parent=Msa0582120-mRNA-1
chr4_2	exon	44806	45306	44806	ID=Msa0582120-mRNA-1:exon:13;Parent=Msa0582120-mRNA-1
chr4_2	exon	45438	46035	45438	ID=Msa0582120-mRNA-1:exon:12;Parent=Msa0582120-mRNA-1
chr4_2	exon	46346	48104	46346	ID=Msa0582120-mRNA-1:exon:11;Parent=Msa0582120-mRNA-1
chr4_2	five_prime_UTR	47785	48104	47785	ID=Msa0582120-mRNA-1:five_prime_utr;Parent=Msa0582120-mRNA-1
chr4_2	CDS	46346	47784	46346	ID=Msa0582120-mRNA-1:cds;Parent=Msa0582120-mRNA-1
chr4_2	CDS	45438	46035	45438	ID=Msa0582120-mRNA-1:cds;Parent=Msa0582120-mRNA-1
chr4_2	CDS	44806	45306	44806	ID=Msa0582120-mRNA-1:cds;Parent=Msa0582120-mRNA-1
chr4_2	CDS	44522	44704	44522	ID=Msa0582120-mRNA-1:cds;Parent=Msa0582120-mRNA-1
chr4_2	CDS	44177	44341	44177	ID=Msa0582120-mRNA-1:cds;Parent=Msa0582120-mRNA-1
chr4_2	CDS	43216	43414	43216	ID=Msa0582120-mRNA-1:cds;Parent=Msa0582120-mRNA-1
chr4_2	CDS	42968	43079	42968	ID=Msa0582120-mRNA-1:cds;Parent=Msa0582120-mRNA-1
chr4_2	CDS	42748	42895	42748	ID=Msa0582120-mRNA-1:cds;Parent=Msa0582120-mRNA-1
chr4_2	CDS	42465	42662	42465	ID=Msa0582120-mRNA-1:cds;Parent=Msa0582120-mRNA-1
chr4_2	CDS	42087	42365	42087	ID=Msa0582120-mRNA-1:cds;Parent=Msa0582120-mRNA-1
chr4_2	CDS	41716	41799	41716	ID=Msa0582120-mRNA-1:cds;Parent=Msa0582120-mRNA-1
chr4_2	CDS	41407	41633	41407	ID=Msa0582120-mRNA-1:cds;Parent=Msa0582120-mRNA-1
chr4_2	CDS	40928	41021	40928	ID=Msa0582120-mRNA-1:cds;Parent=Msa0582120-mRNA-1
chr4_2	three_prime_UTR	40780	40927	40780	ID=Msa0582120-mRNA-1:three_prime_utr;Parent=Msa0582120-mRNA-1

Gene Sequence

>Msa0582120

ATGGCTGCTGGCAAGCAAAAGAAGCGAAGTTTGTCAGAGAGCAGTGAGCAGCCTGCTGCTCCTACTCGTAAAATGCCTAAACGATCAGCAAGTGCAGCAAGTAAAAATTTCAAGGAGAAGTCTTTTTCCAAATCTGATAAGTCTGATCTTATTAAAACAAAGAAGGATCAGGTTGTAGAAGAAGAATTTCTTGCTGTCCGCATGACTGCTGGACAGGAGGATGGCCGCCCAAATAGAAGAATTACAGACTTTATCCTTCATGATGAATCTGGTGCAGCACAACAACTTGAGATGCTTGAAATCAATGATTTGTTCATCACTGGACTTATATTGCCACTGGAAGCAAGTGCAGACAAGAAAAAAGAGCAAGGTGTCCGATGTGAAGGCTTTGGTCGAATTGAATCGTGGGATATATCTGGTTATGACGAGGGTGCTCCAGTGATATGGATTTCTACTGATATTGCTGATTACGATTGCCAGAAACCAGCTGCTAGTTACAAAAAGTTTTATGATCAATTCTTTGAAAAGGCCCGTGCTTGCATTGAAGTTTACAAAAAACTAACAAAGTCTGCTGGTGGAGACCCTGACATAAGTCTTGATGAATTACTTGCTGGCCTGGCACGGTCCATGAGTGGTAGCAAGTACTTTTCTGGAGCTGCATCTCTGAAGGAGTTCATTATTTCTCAGGGCGATTTTATTTATAAGCAGCTCATTGGTTTAGACCTGACGTTGAAGGCGAATGACAAGGGGTTCACAGAGATTCCTGCTCTTGCTGCTCTTAGAGATGAGAGCAAGAAACAAGCAAACTTTGCAAACGCACAAGTGATGCCATCAAATGCAACTTTAAGGATTGGTTCGGGAACCAGGGATGAAGAAATGAAGGATCAGATGGACTCTGTACATGAAGAAGATGAAGATGCAAAGCTAGCAAGACTGTTGCAGGAAGAAGAGTACTGGAAATCAAAAAAGCAGAGGAAAAACCCTAGATCATCCTCGTCATCTAACAAATTCTATATCAAAATTAATGAAGATGAGATAGCCAATGATTACCCTCTCCCTGCTTATTATAAAACTTCTCTTCAAGAAACAGATGAATTTATTGTTTTTGATAACGACTATGATGTGTATGACACTGAAGATCTTCCTAGAAGCATGCTGCATAACTGGGCTTTATACAACTCTGATTCTAGATTGATTTCCTTGGAACTTCTTCCTATGAAACCTTGCTCAGAAATAGATGTTACAATCTTTGGATCAGGTGTAATGACCTCAGATGATGGAAGTGGGTTCAATCTTGATACAGAGGTTGGCCAATCTTCCAGTGCTTCTGGAGAACAGGCCACCGATGGAATTCCAATTTATCTGAGTGCTATAAAAGAATGGATGATTGAATTTGGGTCGTCTATGGTTTTCATATCCATCCGAACAGATATGGCCTGGTATAGACTTGGCAAACCATCAAAGCAGTACTCTCCTTGGTACGAAACCGTATTGAAAACTGCAAGGATTGCTATAAGCATTATCACATTGTTGAAGGAGCAGAGCCGTGTATCACGACTTTCCTTCGGAGATGTCATCAAAAAAGTATCCGAGTTCAGTCAAGACAATAAGTCATACATTTCTTCTGATGCATTGGCTGTGGAGAGATATGTTGTTGTCCACGGACAGATAATTCTGCAACTGTTTGCAGAATTTCCAGATGCGAAGATCAGGAAGTGCCCTTTTGTGGCCGGTCTTACGAGCAAAATGGAAGCGCGGCACCATACCAAATGGTTGATGAAGAAGAAGAAGAAAGTGTTGCCAAGGAGTGAGCCAAATTTAAATCCCAGGGCAGCAATGGCCCCTGTTGTATCCAAAAGAAAAGCTATGCGAGCCACAACAACAAAGCTGATAAACAAAATATGGGGAGAGTATTACTCAAACCACTTGCCGAAGGATTCAGAAGAGGTAATTGCTAGTGAAGTAAAGGATGATGATGATGAGGCGGAGGAACAGGAACAGGAAGAGAATGAAGATGAGGATGCGGAGGTGGAGACAGCAATTATTCATGGTGAAGTTGTTTCTGTTGGAATATCTGTGTCAGTTGAAGTAGATGAATCGGATGAACTTCCTGATATATACTACGTTGAATATATGTTTGAATCGAAGGGTGGGAAAAAAATGTTTCACGGTAGGATGATGCAGCATGGTTGTCAGACTGTTCTTGGCAATGCAGCTAACGAGAGGGAGGTGTTTTTGACTAATGAGTGCAGGGATTTGGGACTGCAGGATGTTAAGCATATAAATGTTGTAAGCATCCGAAAAACACCTTGGGGGCATCAACATCGAAAGGATAACATCATTGCAGATAAAATCGACAGGGAAAGAGCAGAAGAAAGGAAAAAGAAAGGACTGCCTACTGAATATTACTGTAAAAGCTTGTACTGGCCTGAAAGAGGTGCTTTCTTTAGCCTTCCGTTTGATACACTGGGTCTAGGGTCTGGTGTCTGTCAATCTTGCAAGTTACAGGAAGCCGAAGAGGAGAAGGATGTTTTCAAAGGAACTCATAAGAGTGGGAGGAACATAGGGCTGAGAGCTTATGTTATATGCCAAGTGCTTGAGATCATTGCCAAGAAGGAAACAAAACAAGCTGAAATAAAATCTACAGATATCAAAGTCAGAAGGTTCTTCCGACCGGAAGATGTATCAAGTGAGAAGGCATACTGTTCTGATGTGCAAGAGGTGTATTACAGTGATGAAACATGTACAATATCTGTACAATCCATAGAAGGTAAATGTCAAGTCAGGAAAAAGATTGACGTCCCTGATGGATGTGCCCCCGGAATCTTCCATAATGTCTTTTTCTGTGAGCTCTTGTATGATCCTGCCACTGGAGCACTCAAGAAGTTGCCAGCACATATCAAAATAAAATATTCTAGTGGACACACAGCTGATGCTGCAGCTAGAAAGAAAAAGGGAAAATCTAAAGAGGGAGATAGCATTTCAGAGCCTGATCTAGAAAGAAAAACATCAAATGAAAAACGTTTAGCAACCTTGGACATTTTTGCAGGATGCGGTGGCTTATCAGAGGGGTTGCATCAGTCTGGTGTTTCATCAACTAAATGGGCTATTGAGTATGAAGAACCAGCTGGGAATGCGTTTAAAGCTAACCATCCTGAAGCATTGGTGTTTATTAACAATTGCAATGTTATTCTTAGGGCTATAATGGAGAAATGTGGAGACATAGATGATTGTATCTCAACGACAGAGGCTGCAGAGTTGTCCTCTAAACTTGATGAGAAGGATTTAAGTAATTTACCCTTGCCTGGGCAAGTTGATTTCATTAACGGAGGACCTCCATGCCAGGGTTTCTCTGGGATGAATAGATTTAACACAAGCACCTGGAGTAAAGTTCAGTGTGAGATGATACTGGCATTCTTATCCTTTGCTGATTATTTCCGGCCAAGGTATTTCCTGTTGGAGAATGTGAGGAACTTTGTGTCTTTTAATAAAGGACAGACGTTCCGTTTAACTTTGGCTTCACTTCTTGAGATGGGTTATCAGGTGAGGTTCGGTATCCTTGAGGCTGGAGCTTTTGGTGTTTCACAGTCAAGAAAAAGGGCATTTATATGGGCTGCCTCTCCAGAGGACGTGCTTCCAGAGTGGCCAGAACCAATGCATGTCTTTTCTGCTCCTGAATTGAAAATCACATTGTCAGAAAATGTCCAGTATGCTGCCGTCCGTAGTACCGCAAATGGTGCTCCGTTACGTGCAATAACTGTTCGTGATACCATTGGTGAACTCCCAGCTGTAGGCAATGGAGCTTCTAGGACAAACATGGAGGAGATGAATGAGTTGAACTTGATTCGATGTCAGAAAATTCCCAAGAGACCAGGTTGTGATTGGCGTGATCTTCCAGATGAAAAGATAAAGCTGTCAAGTGGACAACTTGTTGATTTGATACCGTGGTGCTTGCCAAACACTGCTAAGAGGCATAATCAATGGAAGGGACTGTTTGGTAGGTTGGACTGGCAAGGAAACTTTCCAACTTCCATCACTGACCCTCAACCAATGGGGAAGGTTGGAATGTGCTTCCATCCTGATCAAGATAGAATTCTTACTGTTCGTGAATGTGCCCGATCTCAAGTAAGTCTGGCTTCCCAGATTGCTATCAATTTTATGGCAACATCATACACAAACACAGGCAGATTGGTAATGCTGTTCCCCCTCTTCTGGCATTTGCGTTAG

Protein sequence

>Msa0582120

MAAGKQKKRSLSESSEQPAAPTRKMPKRSASAASKNFKEKSFSKSDKSDLIKTKKDQVVEEEFLAVRMTAGQEDGRPNRRITDFILHDESGAAQQLEMLEINDLFITGLILPLEASADKKKEQGVRCEGFGRIESWDISGYDEGAPVIWISTDIADYDCQKPAASYKKFYDQFFEKARACIEVYKKLTKSAGGDPDISLDELLAGLARSMSGSKYFSGAASLKEFIISQGDFIYKQLIGLDLTLKANDKGFTEIPALAALRDESKKQANFANAQVMPSNATLRIGSGTRDEEMKDQMDSVHEEDEDAKLARLLQEEEYWKSKKQRKNPRSSSSSNKFYIKINEDEIANDYPLPAYYKTSLQETDEFIVFDNDYDVYDTEDLPRSMLHNWALYNSDSRLISLELLPMKPCSEIDVTIFGSGVMTSDDGSGFNLDTEVGQSSSASGEQATDGIPIYLSAIKEWMIEFGSSMVFISIRTDMAWYRLGKPSKQYSPWYETVLKTARIAISIITLLKEQSRVSRLSFGDVIKKVSEFSQDNKSYISSDALAVERYVVVHGQIILQLFAEFPDAKIRKCPFVAGLTSKMEARHHTKWLMKKKKKVLPRSEPNLNPRAAMAPVVSKRKAMRATTTKLINKIWGEYYSNHLPKDSEEVIASEVKDDDDEAEEQEQEENEDEDAEVETAIIHGEVVSVGISVSVEVDESDELPDIYYVEYMFESKGGKKMFHGRMMQHGCQTVLGNAANEREVFLTNECRDLGLQDVKHINVVSIRKTPWGHQHRKDNIIADKIDRERAEERKKKGLPTEYYCKSLYWPERGAFFSLPFDTLGLGSGVCQSCKLQEAEEEKDVFKGTHKSGRNIGLRAYVICQVLEIIAKKETKQAEIKSTDIKVRRFFRPEDVSSEKAYCSDVQEVYYSDETCTISVQSIEGKCQVRKKIDVPDGCAPGIFHNVFFCELLYDPATGALKKLPAHIKIKYSSGHTADAAARKKKGKSKEGDSISEPDLERKTSNEKRLATLDIFAGCGGLSEGLHQSGVSSTKWAIEYEEPAGNAFKANHPEALVFINNCNVILRAIMEKCGDIDDCISTTEAAELSSKLDEKDLSNLPLPGQVDFINGGPPCQGFSGMNRFNTSTWSKVQCEMILAFLSFADYFRPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPEDVLPEWPEPMHVFSAPELKITLSENVQYAAVRSTANGAPLRAITVRDTIGELPAVGNGASRTNMEEMNELNLIRCQKIPKRPGCDWRDLPDEKIKLSSGQLVDLIPWCLPNTAKRHNQWKGLFGRLDWQGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQVSLASQIAINFMATSYTNTGRLVMLFPLFWHLR*