AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0582120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0582120 MtrunA17_Chr6g0477371 89.452 1479 49 6 1 1375 33 1508 0.0 2707
Msa0582120 MtrunA17_Chr2g0302601 89.204 1482 49 7 2 1375 39 1517 0.0 2691
Msa0582120 MtrunA17_Chr4g0017221 84.993 1526 44 6 1 1375 1 1492 0.0 2607
Msa0582120 MtrunA17_Chr3g0087081 82.284 683 53 6 462 1078 1 681 0.0 1097
Msa0582120 MtrunA17_Chr3g0087141 90.566 212 16 2 1 212 1 208 3.18e-122 379
Msa0582120 MtrunA17_Chr3g0087091 94.479 163 9 0 276 438 1 163 6.18e-101 319
Msa0582120 MtrunA17_Chr3g0087051 99.020 102 1 0 1274 1375 10 111 1.01e-68 228
Msa0582120 MtrunA17_Chr8g0369361 33.038 339 154 9 1099 1375 392 719 1.78e-44 174
Msa0582120 MtrunA17_Chr6g0486931 32.432 333 166 9 1097 1375 534 861 1.46e-41 166
Msa0582120 MtrunA17_Chr6g0484831 30.838 334 167 9 1099 1375 437 763 1.09e-36 150
Msa0582120 MtrunA17_Chr4g0007641 30.267 337 165 9 1099 1375 445 771 6.95e-36 147
Msa0582120 MtrunA17_Chr5g0406641 30.539 334 168 9 1099 1375 438 764 8.98e-36 147
Msa0582120 MtrunA17_Chr7g0215341 29.940 334 170 9 1099 1375 429 755 5.38e-34 141
Msa0582120 MtrunA17_Chr6g0464681 29.697 330 153 9 1099 1375 451 754 3.98e-30 129
Msa0582120 MtrunA17_Chr5g0427891 27.241 290 156 7 1137 1375 1 286 2.16e-20 94.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0582120 AT4G08990.1 55.376 1488 520 21 3 1375 5 1463 0.0 1618
Msa0582120 AT4G13610.1 53.632 1363 466 18 118 1375 59 1360 0.0 1415
Msa0582120 AT5G49160.1 63.158 760 216 4 678 1375 728 1485 0.0 991
Msa0582120 AT5G49160.1 58.939 660 250 11 3 653 8 655 0.0 724
Msa0582120 AT5G49160.2 63.158 760 216 4 678 1375 640 1397 0.0 990
Msa0582120 AT5G49160.2 51.977 354 149 8 3 343 8 353 1.45e-88 317
Msa0582120 AT5G49160.2 61.441 236 84 3 419 653 338 567 5.39e-77 281
Msa0582120 AT4G14140.3 59.363 753 233 6 692 1375 722 1470 0.0 919
Msa0582120 AT4G14140.1 59.363 753 233 6 692 1375 722 1470 0.0 919
Msa0582120 AT4G14140.2 54.044 779 259 9 692 1375 722 1496 0.0 832
Msa0582120 AT4G19020.2 32.249 338 157 9 1099 1375 852 1178 2.40e-39 160
Msa0582120 AT4G19020.1 32.249 338 157 9 1099 1375 900 1226 3.06e-39 160
Msa0582120 AT1G69770.1 30.769 338 162 9 1099 1375 445 771 5.50e-39 158
Msa0582120 AT1G80740.1 31.454 337 159 10 1099 1375 402 726 8.20e-35 144

Find 347 sgRNAs with CRISPR-Local

Find 539 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGTCTGTAATTCTTCTATT+TGG 0.111398 4_2:+47534 None:intergenic
TGCCATCAAATGCAACTTTA+AGG 0.139031 4_2:-46936 Msa0582120:CDS
AAAGAATGGATGATTGAATT+TGG 0.142848 4_2:-46388 Msa0582120:CDS
TGTAACTAGCAGCTGGTTTC+TGG 0.145112 4_2:+47286 None:intergenic
GACTTGACATTTACCTTCTA+TGG 0.159952 4_2:+44279 None:intergenic
GAAATAGATGTTACAATCTT+TGG 0.171368 4_2:-46532 Msa0582120:CDS
CAAAGCTGATAAACAAAATA+TGG 0.186373 4_2:-45570 Msa0582120:CDS
TTTATAGCACTCAGATAAAT+TGG 0.202631 4_2:+46409 None:intergenic
GCTGCCCTGGGATTTAAATT+TGG 0.212779 4_2:+45640 None:intergenic
ACAATTGCAATGTTATTCTT+AGG 0.215043 4_2:-42967 Msa0582120:intron
CTAAAGAAAGCACCTCTTTC+AGG 0.227514 4_2:+44894 None:intergenic
TATCCTTTGCTGATTATTTC+CGG 0.231819 4_2:-42567 Msa0582120:CDS
GGCCAATCTTCCAGTGCTTC+TGG 0.232412 4_2:-46454 Msa0582120:CDS
CTAGAAGCATGCTGCATAAC+TGG 0.248416 4_2:-46618 Msa0582120:CDS
CAGGTGTTTCATCAACTAAA+TGG 0.249713 4_2:-43060 Msa0582120:CDS
GTGTTTCACAGTCAAGAAAA+AGG 0.252732 4_2:-42309 Msa0582120:CDS
GACTAATGAGTGCAGGGATT+TGG 0.255013 4_2:-45084 Msa0582120:CDS
ATCCTTGAGGCTGGAGCTTT+TGG 0.257057 4_2:-42331 Msa0582120:CDS
ATCCTTAAAGTTGCATTTGA+TGG 0.262090 4_2:+46934 None:intergenic
CAGTTATGCAGCATGCTTCT+AGG 0.265489 4_2:+46619 None:intergenic
ACTTCTTGAGATGGGTTATC+AGG 0.268393 4_2:-42464 Msa0582120:intron
TGCTGCAGCTAGAAAGAAAA+AGG 0.272588 4_2:-43345 Msa0582120:CDS
ATCCTTCTCATCAAGTTTAG+AGG 0.274009 4_2:+42808 None:intergenic
AAGATCAGACTTATCAGATT+TGG 0.278961 4_2:+47635 None:intergenic
CCTCTTCTGGCATTTGCGTT+AGG 0.282620 4_2:-40927 Msa0582120:exon
CAGATCGTGAAATATAAATA+AGG 0.286314 4_2:+47927 None:intergenic
CTGTCAATCTTGCAAGTTAC+AGG 0.288217 4_2:-44835 Msa0582120:CDS
TGCAAAATAGAAGGACAAAA+AGG 0.293968 4_2:+47982 None:intergenic
TGCCTTTACATTACTTTCCT+TGG 0.306036 4_2:-47888 Msa0582120:five_prime_UTR
AGTCTGTAATTCTTCTATTT+GGG 0.313156 4_2:+47535 None:intergenic
CTTCTTCTTCATCAACCATT+TGG 0.318886 4_2:+45687 None:intergenic
TTAATAAACACCAATGCTTC+AGG 0.319794 4_2:+42989 None:intergenic
ACTAATGAGTGCAGGGATTT+GGG 0.321536 4_2:-45083 Msa0582120:CDS
CATATCCATCCGAACAGATA+TGG 0.321738 4_2:-46350 Msa0582120:CDS
CAAGGAGAGTACTGCTTTGA+TGG 0.327817 4_2:+45997 None:intergenic
CATGGTTGTCAGACTGTTCT+TGG 0.335285 4_2:-45137 Msa0582120:CDS
AAGAATGGATGATTGAATTT+GGG 0.338208 4_2:-46387 Msa0582120:CDS
CTGTAGGCAATGGAGCTTCT+AGG 0.338393 4_2:-42099 Msa0582120:CDS
ATCCTTCATTTCTTCATCCC+TGG 0.347300 4_2:+46900 None:intergenic
CCATAAAATTGATAGCAATC+TGG 0.350474 4_2:+40993 None:intergenic
AAAGACATTATGGAAGATTC+CGG 0.352616 4_2:+44222 None:intergenic
ATCGCAAGATCGTACGATCT+TGG 0.355706 4_2:+40792 None:intergenic
GAAGGAGTTCATTATTTCTC+AGG 0.358601 4_2:-47097 Msa0582120:CDS
TTTATCCTTCATGATGAATC+TGG 0.360290 4_2:-47513 Msa0582120:CDS
ACGAGGGTGCTCCAGTGATA+TGG 0.361036 4_2:-47338 Msa0582120:CDS
GATTGAATTTGGGTCGTCTA+TGG 0.361394 4_2:-46377 Msa0582120:CDS
TATAAGCAGGCAATTATTCA+TGG 0.366412 4_2:-45293 Msa0582120:intron
CCAACCTTCCCCATTGGTTG+AGG 0.368033 4_2:+41476 None:intergenic
CCGTTTGATACACTGGGTCT+AGG 0.368046 4_2:-44867 Msa0582120:CDS
CTCTTCTGGCATTTGCGTTA+GGG 0.370697 4_2:-40926 Msa0582120:exon
AAAGCTAGCAAGACTGTTGC+AGG 0.371615 4_2:-46842 Msa0582120:CDS
TTCTCACTTGATACATCTTC+CGG 0.374062 4_2:+44547 None:intergenic
TTAGATGACGAGGATGATCT+AGG 0.375714 4_2:+46781 None:intergenic
ATGGGAGCAAGGAAATAAAC+AGG 0.376694 4_2:+48060 None:intergenic
GAAAAGACATGCATTGGTTC+TGG 0.380413 4_2:+42241 None:intergenic
TTATGCCTCTTAGCAGTGTT+TGG 0.383658 4_2:+41563 None:intergenic
TGCAACTTTAAGGATTGGTT+CGG 0.384693 4_2:-46926 Msa0582120:CDS
TTCCAGTGCTTCTGGAGAAC+AGG 0.390600 4_2:-46446 Msa0582120:CDS
ATTTCTGAGCAAGGTTTCAT+AGG 0.391768 4_2:+46550 None:intergenic
CCAATCACAACCTGGTCTCT+TGG 0.392096 4_2:+41737 None:intergenic
CACTTCCTGATCTTCGCATC+TGG 0.392600 4_2:+45757 None:intergenic
TGTCATTCGCCTTCAACGTC+AGG 0.394855 4_2:+47040 None:intergenic
GGGCAAGTTGATTTCATTAA+CGG 0.394903 4_2:-42764 Msa0582120:CDS
AACAGGGGCCATTGCTGCCC+TGG 0.395595 4_2:+45627 None:intergenic
GCTGCACTTGCTGATCGTTT+AGG 0.396584 4_2:+47687 None:intergenic
TAAGGATTGGTTCGGGAACC+AGG 0.397469 4_2:-46918 Msa0582120:CDS
TATTCAACGTAGTATATATC+AGG 0.398524 4_2:+45212 None:intergenic
TGAAGATGAGGATGCGGAGG+TGG 0.406038 4_2:-45443 Msa0582120:CDS
CCAAGAGACCAGGTTGTGAT+TGG 0.407049 4_2:-41737 Msa0582120:CDS
CTCGTAAGACCGGCCACAAA+AGG 0.408558 4_2:+45733 None:intergenic
TGATTCTAGATTGATTTCCT+TGG 0.409842 4_2:-46581 Msa0582120:CDS
CTCCAGAAGCACTGGAAGAT+TGG 0.410312 4_2:+46452 None:intergenic
ATTGAATCGTGGGATATATC+TGG 0.410573 4_2:-47366 Msa0582120:CDS
TGATGATGAGGCGGAGGAAC+AGG 0.411149 4_2:-45479 Msa0582120:CDS
AATCAATGGAAGGGACTGTT+TGG 0.412918 4_2:-41542 Msa0582120:CDS
CACTCTGGAAGCACGTCCTC+TGG 0.413774 4_2:+42265 None:intergenic
TTTATTTATAAGCAGCTCAT+TGG 0.414090 4_2:-47069 Msa0582120:CDS
TAGCCTTCCGTTTGATACAC+TGG 0.414164 4_2:-44874 Msa0582120:CDS
TTTAAATTTGGCTCACTCCT+TGG 0.415491 4_2:+45652 None:intergenic
ATCAATGATTTGTTCATCAC+TGG 0.415562 4_2:-47462 Msa0582120:CDS
GGCCGGTCTTACGAGCAAAA+TGG 0.416299 4_2:-45725 Msa0582120:CDS
ATTGTTCAAAATAGGTGTTA+AGG 0.417219 4_2:-47834 Msa0582120:five_prime_UTR
ATTGTAATGCAGGGCTATAA+TGG 0.417934 4_2:-42885 Msa0582120:intron
TCGCAAGATCGTACGATCTT+GGG 0.421982 4_2:+40793 None:intergenic
TCAAATGCAACTTTAAGGAT+TGG 0.425254 4_2:-46931 Msa0582120:CDS
CATAAAATTGATAGCAATCT+GGG 0.428615 4_2:+40994 None:intergenic
CACATTGCCTGCAAAATAGA+AGG 0.428718 4_2:+47973 None:intergenic
CTTGCTGTCCGCATGACTGC+TGG 0.429164 4_2:-47573 Msa0582120:CDS
AAAGCTGATAAACAAAATAT+GGG 0.431604 4_2:-45569 Msa0582120:CDS
GATGTTACAATCTTTGGATC+AGG 0.431701 4_2:-46526 Msa0582120:CDS
TTAAGTAATTTACCCTTGCC+TGG 0.432361 4_2:-42785 Msa0582120:CDS
TTTGGCTTCACTTCTTGAGA+TGG 0.432906 4_2:-42473 Msa0582120:CDS
ATCACTGACCCTCAACCAAT+GGG 0.438086 4_2:-41485 Msa0582120:CDS
CAATCACAACCTGGTCTCTT+GGG 0.439154 4_2:+41738 None:intergenic
AAGACATTATGGAAGATTCC+GGG 0.440098 4_2:+44223 None:intergenic
GCAACTTTAAGGATTGGTTC+GGG 0.440959 4_2:-46925 Msa0582120:CDS
AAGCATTATCACATTGTTGA+AGG 0.441839 4_2:-45938 Msa0582120:CDS
GTTTATCAGCTTTGTTGTTG+TGG 0.442910 4_2:+45579 None:intergenic
AGTCTTGATGAATTACTTGC+TGG 0.443284 4_2:-47171 Msa0582120:CDS
TTCTTGAGTGCTCCAGTGGC+AGG 0.443712 4_2:+44178 None:intergenic
TCTTCATCAACCATTTGGTA+TGG 0.444102 4_2:+45692 None:intergenic
TGATGAATTACTTGCTGGCC+TGG 0.445778 4_2:-47166 Msa0582120:CDS
ATACATTTCTTCTGATGCAT+TGG 0.445973 4_2:-45839 Msa0582120:CDS
TGCATTGGTTCTGGCCACTC+TGG 0.447335 4_2:+42250 None:intergenic
AGGTGTTTCATCAACTAAAT+GGG 0.448556 4_2:-43059 Msa0582120:CDS
GAAAACATCCTTCTCCTCTT+CGG 0.450029 4_2:+44809 None:intergenic
AATTTCCAGATGCGAAGATC+AGG 0.452015 4_2:-45762 Msa0582120:CDS
TTCTTCTGATGCATTGGCTG+TGG 0.452559 4_2:-45833 Msa0582120:CDS
GGTAATTGCTAGTGAAGTAA+AGG 0.452978 4_2:-45506 Msa0582120:CDS
CAACCTTCCCCATTGGTTGA+GGG 0.453644 4_2:+41477 None:intergenic
TTATGATCAATTCTTTGAAA+AGG 0.455122 4_2:-47256 Msa0582120:CDS
TGAATATATGTTTGAATCGA+AGG 0.457008 4_2:-45195 Msa0582120:CDS
CACATTCCAACCTTCCCCAT+TGG 0.458383 4_2:+41470 None:intergenic
GATACACTGGGTCTAGGGTC+TGG 0.461201 4_2:-44861 Msa0582120:CDS
CTCTTCAGTGTTCGAAACAA+AGG 0.462218 4_2:+47791 None:intergenic
ATTACCTCTTCTGAATCCTT+CGG 0.464779 4_2:+45523 None:intergenic
AATTCATCAAGACTTATGTC+AGG 0.466907 4_2:+47180 None:intergenic
GACTGTTTGGTAGGTTGGAC+TGG 0.467100 4_2:-41529 Msa0582120:CDS
GAAGCTCCATTGCCTACAGC+TGG 0.468234 4_2:+42103 None:intergenic
GTAAGAATTCTATCTTGATC+AGG 0.469990 4_2:+41440 None:intergenic
TGTCCGCATGACTGCTGGAC+AGG 0.470364 4_2:-47568 Msa0582120:CDS
TTTGTTCAAAAGGTGAGGTT+CGG 0.472838 4_2:-42355 Msa0582120:intron
GAAGGGACTGTTTGGTAGGT+TGG 0.473321 4_2:-41534 Msa0582120:CDS
GCCGTCCGTAGTACCGCAAA+TGG 0.474520 4_2:-42172 Msa0582120:CDS
TACTACGGACGGCAGCATAC+TGG 0.475111 4_2:+42182 None:intergenic
AGAGAATGAAGATGAGGATG+CGG 0.475162 4_2:-45449 Msa0582120:CDS
TGAGGCGGAGGAACAGGAAC+AGG 0.476738 4_2:-45473 Msa0582120:CDS
TGAGGGTCAGTGATGGAAGT+TGG 0.476872 4_2:+41494 None:intergenic
TATTAAAACAAAGAAGGATC+AGG 0.478388 4_2:-47613 Msa0582120:CDS
AAAGTACTTGCTACCACTCA+TGG 0.478979 4_2:+47137 None:intergenic
GAAGTGAAGCCAAAGTTAAA+CGG 0.479616 4_2:+42482 None:intergenic
TTGCTGATTATTTCCGGCCA+AGG 0.481613 4_2:-42561 Msa0582120:CDS
GGTGTCCGATGTGAAGGCTT+TGG 0.481819 4_2:-47393 Msa0582120:CDS
CTGCTAAGAGGCATAATCAA+TGG 0.483329 4_2:-41556 Msa0582120:CDS
TCAGAGGGGTTGCATCAGTC+TGG 0.484966 4_2:-43215 Msa0582120:intron
TACCACTCATGGACCGTGCC+AGG 0.485358 4_2:+47148 None:intergenic
CTTATTGTCTTGACTGAACT+CGG 0.485413 4_2:+45864 None:intergenic
CATAAGAGTGGGAGGAACAT+AGG 0.487006 4_2:-44676 Msa0582120:CDS
ACAGACGTTCCGTTTAACTT+TGG 0.487656 4_2:-42491 Msa0582120:CDS
CATGGTGAAGTTGTTTCTGT+TGG 0.489222 4_2:-45275 Msa0582120:CDS
AGGTTCGGTATCCTTGAGGC+TGG 0.492333 4_2:-42340 Msa0582120:CDS
CTTCTGAATCCTTCGGCAAG+TGG 0.493004 4_2:+45530 None:intergenic
CTCTTGTATGATCCTGCCAC+TGG 0.493237 4_2:-44190 Msa0582120:CDS
TAGAAGGTAAATGTCAAGTC+AGG 0.493660 4_2:-44276 Msa0582120:CDS
ATGCATCCTAGTCTTCTACT+TGG 0.494219 4_2:+40869 None:intergenic
TGGTTTAGACCTGACGTTGA+AGG 0.494343 4_2:-47049 Msa0582120:CDS
AGTTCCTCACATTCTCCAAC+AGG 0.496336 4_2:+42533 None:intergenic
AGCCTTCCGTTTGATACACT+GGG 0.497999 4_2:-44873 Msa0582120:CDS
ATATCTGTACAATCCATAGA+AGG 0.498237 4_2:-44292 Msa0582120:CDS
CTAACAGACTTACTTGAGAT+CGG 0.498540 4_2:+41402 None:intergenic
AGATCGTGAAATATAAATAA+GGG 0.499605 4_2:+47928 None:intergenic
GGCCTGTTCTCCAGAAGCAC+TGG 0.500379 4_2:+46444 None:intergenic
CGTTTGATACACTGGGTCTA+GGG 0.500653 4_2:-44866 Msa0582120:CDS
TTCAATCTTGATACAGAGGT+TGG 0.502750 4_2:-46475 Msa0582120:CDS
AGCTAACCATCCTGAAGCAT+TGG 0.503776 4_2:-42999 Msa0582120:CDS
GCGTGATCTTCCAGATGAAA+AGG 0.504411 4_2:-41715 Msa0582120:intron
CATCACTGACCCTCAACCAA+TGG 0.505729 4_2:-41486 Msa0582120:CDS
CACTGGACTTATATTGCCAC+TGG 0.506235 4_2:-47445 Msa0582120:CDS
AGTTCAGTGTGAGATGATAC+TGG 0.507699 4_2:-42596 Msa0582120:CDS
GTAACATCTATTTCTGAGCA+AGG 0.508872 4_2:+46541 None:intergenic
TTGTCTGCACTTGCTTCCAG+TGG 0.510337 4_2:+47429 None:intergenic
GTCCTCTAAACTTGATGAGA+AGG 0.510773 4_2:-42810 Msa0582120:CDS
TTCTGGAGCTGCATCTCTGA+AGG 0.510893 4_2:-47115 Msa0582120:CDS
GCTTTAAACGCATTCCCAGC+TGG 0.511275 4_2:+43019 None:intergenic
TTGGCTTCACTTCTTGAGAT+GGG 0.511945 4_2:-42472 Msa0582120:CDS
TAACAGACTTACTTGAGATC+GGG 0.513066 4_2:+41403 None:intergenic
GGAGCAGAAAAGACATGCAT+TGG 0.513232 4_2:+42235 None:intergenic
ACAGGAAGCCGAAGAGGAGA+AGG 0.513986 4_2:-44817 Msa0582120:CDS
ATTACTGTAAAAGCTTGTAC+TGG 0.518877 4_2:-44917 Msa0582120:CDS
TAACGGAGGACCTCCATGCC+AGG 0.518926 4_2:-42747 Msa0582120:intron
CCTCAACCAATGGGGAAGGT+TGG 0.519563 4_2:-41476 Msa0582120:CDS
ACAGGGAAAGAGCAGAAGAA+AGG 0.519646 4_2:-44965 Msa0582120:CDS
TCTTCAGTGTTCGAAACAAA+GGG 0.520771 4_2:+47792 None:intergenic
AACCAAGGAAAGTAATGTAA+AGG 0.521036 4_2:+47886 None:intergenic
TTTAAATCCCAGGGCAGCAA+TGG 0.521657 4_2:-45635 Msa0582120:CDS
TCAGTAGAAATCCATATCAC+TGG 0.522936 4_2:+47327 None:intergenic
GTCCCTGATGGATGTGCCCC+CGG 0.523131 4_2:-44241 Msa0582120:CDS
CCGGCCAAGGTATTTCCTGT+TGG 0.524119 4_2:-42548 Msa0582120:CDS
ATAAGAGTGGGAGGAACATA+GGG 0.524235 4_2:-44675 Msa0582120:CDS
TGGCAATGATCTCAAGCACT+TGG 0.524919 4_2:+44632 None:intergenic
GTGAGCCAAATTTAAATCCC+AGG 0.528047 4_2:-45645 Msa0582120:CDS
GGTGTAATGACCTCAGATGA+TGG 0.529194 4_2:-46505 Msa0582120:CDS
TTCAATACGGTTTCGTACCA+AGG 0.529766 4_2:+45979 None:intergenic
CCAACAGGAAATACCTTGGC+CGG 0.530163 4_2:+42548 None:intergenic
GAACACTGAAGAGGAAGTTA+TGG 0.530450 4_2:-47781 Msa0582120:exon
TCTCTAAGAGCAGCAAGAGC+AGG 0.531430 4_2:+47000 None:intergenic
GAAATCAACTTGCCCAGGCA+AGG 0.532166 4_2:+42772 None:intergenic
ATCTGAGTGCTATAAAAGAA+TGG 0.532840 4_2:-46402 Msa0582120:CDS
CGTGTATCACGACTTTCCTT+CGG 0.533340 4_2:-45907 Msa0582120:CDS
TGTTGCAGGAAGAAGAGTAC+TGG 0.534303 4_2:-46828 Msa0582120:CDS
ACAGGGGCCATTGCTGCCCT+GGG 0.534623 4_2:+45628 None:intergenic
AGAAGAAGAAAGTGTTGCCA+AGG 0.536279 4_2:-45669 Msa0582120:CDS
ATGATAAGCATGCTTTATGC+AGG 0.538896 4_2:+40846 None:intergenic
ATACACAAACACAGGCAGAT+TGG 0.539307 4_2:-40963 Msa0582120:CDS
ATTGAGTATGAAGAACCAGC+TGG 0.539741 4_2:-43034 Msa0582120:CDS
AATGGAAGGGACTGTTTGGT+AGG 0.540390 4_2:-41538 Msa0582120:CDS
TGAAGAAATGAAGGATCAGA+TGG 0.540650 4_2:-46893 Msa0582120:CDS
TAGAAGCATGCTGCATAACT+GGG 0.541416 4_2:-46617 Msa0582120:CDS
GAGCAAGGTGTCCGATGTGA+AGG 0.543633 4_2:-47399 Msa0582120:CDS
CCAGGCCATATCTGTTCGGA+TGG 0.544244 4_2:+46345 None:intergenic
AGCTTGTACTGGCCTGAAAG+AGG 0.544458 4_2:-44906 Msa0582120:CDS
CATCAAAGCAGTACTCTCCT+TGG 0.546622 4_2:-45996 Msa0582120:CDS
ATGACTGCTGGACAGGAGGA+TGG 0.547162 4_2:-47561 Msa0582120:CDS
CCTAACGCAAATGCCAGAAG+AGG 0.547857 4_2:+40927 None:intergenic
TGATCTTATTAAAACAAAGA+AGG 0.548590 4_2:-47619 Msa0582120:CDS
GTCAGTTGAAGTAGATGAAT+CGG 0.550066 4_2:-45243 Msa0582120:CDS
TCATTGCAGATAAAATCGAC+AGG 0.550196 4_2:-44983 Msa0582120:CDS
TAAGTAATTTACCCTTGCCT+GGG 0.550802 4_2:-42784 Msa0582120:CDS
TCGTAAGACCGGCCACAAAA+GGG 0.550966 4_2:+45734 None:intergenic
AGCAGGGAGAGGGTAATCAT+TGG 0.551057 4_2:+46723 None:intergenic
CCATCCGAACAGATATGGCC+TGG 0.552274 4_2:-46345 Msa0582120:intron
GAAGAGGAAGTTATGGCTGC+TGG 0.552306 4_2:-47774 Msa0582120:exon
AACCAGGGATGAAGAAATGA+AGG 0.553231 4_2:-46902 Msa0582120:CDS
ACAGGAAGAGAATGAAGATG+AGG 0.555822 4_2:-45455 Msa0582120:CDS
GCTTGCCAAACACTGCTAAG+AGG 0.556026 4_2:-41568 Msa0582120:CDS
TCTGGAGAACAGGCCACCGA+TGG 0.556031 4_2:-46436 Msa0582120:CDS
CGAAGGAAAGTCGTGATACA+CGG 0.556214 4_2:+45908 None:intergenic
CTTTGTTTCGAACACTGAAG+AGG 0.556292 4_2:-47790 Msa0582120:five_prime_UTR
AAGGAGTTCATTATTTCTCA+GGG 0.556349 4_2:-47096 Msa0582120:CDS
TTTGGTAGGTTGGACTGGCA+AGG 0.556477 4_2:-41524 Msa0582120:CDS
CACCAAAAGCTCCAGCCTCA+AGG 0.557725 4_2:+42329 None:intergenic
AATTACTTGCTGGCCTGGCA+CGG 0.558027 4_2:-47161 Msa0582120:CDS
GCTTGAGATCATTGCCAAGA+AGG 0.558348 4_2:-44626 Msa0582120:CDS
TATATGTTTGAATCGAAGGG+TGG 0.559517 4_2:-45191 Msa0582120:CDS
GTAAACTTCAATGCAAGCAC+GGG 0.559576 4_2:+47233 None:intergenic
CATACCAGGCCATATCTGTT+CGG 0.560856 4_2:+46341 None:intergenic
GAGCACCATTTGCGGTACTA+CGG 0.562184 4_2:+42167 None:intergenic
CTTTGGTCGAATTGAATCGT+GGG 0.562613 4_2:-47376 Msa0582120:CDS
GGATGATGATGATGAGGCGG+AGG 0.563655 4_2:-45485 Msa0582120:CDS
AGTCAGAAGGTTCTTCCGAC+CGG 0.564966 4_2:-44566 Msa0582120:CDS
CAGAAAATTCCCAAGAGACC+AGG 0.566824 4_2:-41747 Msa0582120:CDS
TGAGCTCCACAAACCTGGCA+TGG 0.567342 4_2:+42734 None:intergenic
AGAGCTCCAAGTAGAAGACT+AGG 0.567494 4_2:-40875 Msa0582120:three_prime_UTR
TAGATGACGAGGATGATCTA+GGG 0.567855 4_2:+46782 None:intergenic
AAGCGCGGCACCATACCAAA+TGG 0.569621 4_2:-45702 Msa0582120:CDS
GAATGAAGATGAGGATGCGG+AGG 0.569663 4_2:-45446 Msa0582120:CDS
GAACTCCCAGCTGTAGGCAA+TGG 0.572403 4_2:-42109 Msa0582120:CDS
CATTGGTTGAGGGTCAGTGA+TGG 0.573709 4_2:+41487 None:intergenic
GGATGCGGTGGCTTATCAGA+GGG 0.574046 4_2:-43230 Msa0582120:CDS
ATCAAAATAAAATATTCTAG+TGG 0.576130 4_2:-43380 Msa0582120:CDS
AGCAGGGAACTCATAAGAGT+GGG 0.576744 4_2:-44687 Msa0582120:intron
ATATGTTTGAATCGAAGGGT+GGG 0.577185 4_2:-45190 Msa0582120:CDS
ACGTAACGGAGCACCATTTG+CGG 0.577358 4_2:+42159 None:intergenic
TGCGTTAGGGACAAAACTCA+AGG 0.579564 4_2:-40913 Msa0582120:exon
AAATCAACTTGCCCAGGCAA+GGG 0.581528 4_2:+42773 None:intergenic
GAGCAGGGAACTCATAAGAG+TGG 0.582015 4_2:-44688 Msa0582120:intron
TAAGGACAGCACGAGTAAAG+AGG 0.583312 4_2:-47816 Msa0582120:five_prime_UTR
GAATTCTATCTTGATCAGGA+TGG 0.583843 4_2:+41444 None:intergenic
GTGCAGGGATTTGGGACTGC+AGG 0.585429 4_2:-45075 Msa0582120:CDS
CCTAGACCCAGTGTATCAAA+CGG 0.587543 4_2:+44867 None:intergenic
AGGATGCGGTGGCTTATCAG+AGG 0.587547 4_2:-43231 Msa0582120:CDS
CAAGTTACAGGAAGCCGAAG+AGG 0.588394 4_2:-44823 Msa0582120:CDS
GACGTTGAAGGCGAATGACA+AGG 0.589727 4_2:-47037 Msa0582120:CDS
GAATATATGTTTGAATCGAA+GGG 0.590199 4_2:-45194 Msa0582120:CDS
TTAATGAAATCAACTTGCCC+AGG 0.590670 4_2:+42767 None:intergenic
GGATACATCTGATGATCTGA+AGG 0.591321 4_2:+48082 None:intergenic
GACAAAACTCAAGGAAGCAG+TGG 0.592604 4_2:-40904 Msa0582120:three_prime_UTR
CTGTAATTCTTCTATTTGGG+CGG 0.593315 4_2:+47538 None:intergenic
AAACTAACAAAGTCTGCTGG+TGG 0.593444 4_2:-47207 Msa0582120:CDS
TGTAAACTTCAATGCAAGCA+CGG 0.594282 4_2:+47232 None:intergenic
TACCTTCTTGAGTGCTCCAG+TGG 0.594583 4_2:+44174 None:intergenic
CTCACACTGAACTTTACTCC+AGG 0.594637 4_2:+42606 None:intergenic
TGCCACTGGAGCACTCAAGA+AGG 0.594823 4_2:-44176 Msa0582120:intron
ATGACCTCAGATGATGGAAG+TGG 0.598130 4_2:-46499 Msa0582120:CDS
TTTCATAGGAAGAAGTTCCA+AGG 0.599009 4_2:+46564 None:intergenic
CTAACGCAAATGCCAGAAGA+GGG 0.599049 4_2:+40928 None:intergenic
AAGCTCCATTGCCTACAGCT+GGG 0.599593 4_2:+42104 None:intergenic
CAGATAAATTGGAATTCCAT+CGG 0.600091 4_2:+46420 None:intergenic
TTCTCCAACAGGAAATACCT+TGG 0.601246 4_2:+42544 None:intergenic
TAAGAGGCATAATCAATGGA+AGG 0.601314 4_2:-41552 Msa0582120:CDS
CACGGTAGGATGATGCAGCA+TGG 0.603834 4_2:-45155 Msa0582120:CDS
TGGAAGCACGTCCTCTGGAG+AGG 0.606671 4_2:+42270 None:intergenic
CTGCACCAGATTCATCATGA+AGG 0.606750 4_2:+47508 None:intergenic
CCGCATGACTGCTGGACAGG+AGG 0.606824 4_2:-47565 Msa0582120:CDS
GCACAGATAAAGCTGTCAAG+TGG 0.607521 4_2:-41617 Msa0582120:intron
AAAGGATGATGATGATGAGG+CGG 0.608814 4_2:-45488 Msa0582120:CDS
CAAGTTGATTTCATTAACGG+AGG 0.608873 4_2:-42761 Msa0582120:CDS
ATTTCCTGTTGGAGAATGTG+AGG 0.610030 4_2:-42537 Msa0582120:CDS
TAAACACCAATGCTTCAGGA+TGG 0.610901 4_2:+42993 None:intergenic
AAGGATTGGTTCGGGAACCA+GGG 0.611085 4_2:-46917 Msa0582120:CDS
CATATTCGATAATGAAACCA+AGG 0.613288 4_2:+47871 None:intergenic
ATTGGTGAACTCCCAGCTGT+AGG 0.614734 4_2:-42115 Msa0582120:CDS
GCTTTGGTCGAATTGAATCG+TGG 0.616090 4_2:-47377 Msa0582120:CDS
AAGCATGCTTATCATGAGCA+AGG 0.616225 4_2:-40838 Msa0582120:three_prime_UTR
AGACATTATGGAAGATTCCG+GGG 0.616358 4_2:+44224 None:intergenic
GGCCTGGCACGGTCCATGAG+TGG 0.616428 4_2:-47150 Msa0582120:CDS
CACTTGATACATCTTCCGGT+CGG 0.617098 4_2:+44551 None:intergenic
ACGTTGAAGGCGAATGACAA+GGG 0.617396 4_2:-47036 Msa0582120:CDS
ATACACAAGAAATGGGAGCA+AGG 0.618000 4_2:+48049 None:intergenic
AACGCAAATGCCAGAAGAGG+GGG 0.619249 4_2:+40930 None:intergenic
GACCCAGTGTATCAAACGGA+AGG 0.620222 4_2:+44871 None:intergenic
GGAAGATGTATCAAGTGAGA+AGG 0.621029 4_2:-44545 Msa0582120:CDS
CTACAGATATCAAAGTCAGA+AGG 0.621252 4_2:-44579 Msa0582120:CDS
TTACTCAAACCACTTGCCGA+AGG 0.623960 4_2:-45539 Msa0582120:CDS
ATAGAATTTGTTAGATGACG+AGG 0.624461 4_2:+46771 None:intergenic
TACAGCTGGGAGTTCACCAA+TGG 0.625360 4_2:+42117 None:intergenic
TGGGTTCAATCTTGATACAG+AGG 0.625538 4_2:-46479 Msa0582120:CDS
AGATCACGCCAATCACAACC+TGG 0.629035 4_2:+41729 None:intergenic
ATACTGTTCTGATGTGCAAG+AGG 0.630024 4_2:-44521 Msa0582120:intron
ACCATTTGCGGTACTACGGA+CGG 0.630083 4_2:+42171 None:intergenic
TGGAGCTTCTAGGACAAACA+TGG 0.631280 4_2:-42089 Msa0582120:CDS
TGACCCTCAACCAATGGGGA+AGG 0.633610 4_2:-41480 Msa0582120:CDS
TTGAGTATGAAGAACCAGCT+GGG 0.634745 4_2:-43033 Msa0582120:CDS
TGGCCGGAAATAATCAGCAA+AGG 0.637634 4_2:+42564 None:intergenic
TTGGCAATGCAGCTAACGAG+AGG 0.641520 4_2:-45118 Msa0582120:CDS
TGGCAATGCAGCTAACGAGA+GGG 0.642845 4_2:-45117 Msa0582120:CDS
CATTGCAGATAAAATCGACA+GGG 0.643220 4_2:-44982 Msa0582120:CDS
AAGCTGATAAACAAAATATG+GGG 0.644678 4_2:-45568 Msa0582120:CDS
AACTTGTTGATTTGATACCG+TGG 0.645815 4_2:-41592 Msa0582120:CDS
GCAACATCATACACAAACAC+AGG 0.646343 4_2:-40971 Msa0582120:CDS
AAGAGGCATAATCAATGGAA+GGG 0.647111 4_2:-41551 Msa0582120:CDS
TGAGCCAAATTTAAATCCCA+GGG 0.647946 4_2:-45644 Msa0582120:CDS
AAACCGTATTGAAAACTGCA+AGG 0.648979 4_2:-45969 Msa0582120:CDS
ATTCATCAAGACTTATGTCA+GGG 0.651158 4_2:+47181 None:intergenic
ATAACTGTTCGTGATACCAT+TGG 0.653048 4_2:-42133 Msa0582120:CDS
GAACCCACTTCCATCATCTG+AGG 0.653325 4_2:+46495 None:intergenic
CCTCCTGTCCAGCAGTCATG+CGG 0.653453 4_2:+47565 None:intergenic
TGACCTCAGATGATGGAAGT+GGG 0.654518 4_2:-46498 Msa0582120:CDS
AGGGAACTCATAAGAGTGGG+AGG 0.655730 4_2:-44684 Msa0582120:CDS
CAGAGGACGTGCTTCCAGAG+TGG 0.656769 4_2:-42264 Msa0582120:CDS
TAACGCAAATGCCAGAAGAG+GGG 0.657370 4_2:+40929 None:intergenic
GGATATATCTGGTTATGACG+AGG 0.658859 4_2:-47355 Msa0582120:CDS
AAGTAATGTAAAGGCAACAG+AGG 0.661119 4_2:+47895 None:intergenic
GTTGCAGAATTATCTGTCCG+TGG 0.662025 4_2:+45794 None:intergenic
CGTTGAAGGCGAATGACAAG+GGG 0.665682 4_2:-47035 Msa0582120:CDS
ATAGATTTAACACAAGCACC+TGG 0.667229 4_2:-42624 Msa0582120:CDS
AGTAATGTAAAGGCAACAGA+GGG 0.670451 4_2:+47896 None:intergenic
TATATGGGCTGCCTCTCCAG+AGG 0.670533 4_2:-42281 Msa0582120:CDS
CGAACAGTTATTGCACGTAA+CGG 0.671422 4_2:+42145 None:intergenic
GGTGAGGTTCGGTATCCTTG+AGG 0.672500 4_2:-42344 Msa0582120:CDS
GCAGTGTTTGGCAAGCACCA+CGG 0.673604 4_2:+41575 None:intergenic
CAATGCAGCTAACGAGAGGG+AGG 0.674520 4_2:-45114 Msa0582120:CDS
CTTGCCGAAGGATTCAGAAG+AGG 0.675025 4_2:-45527 Msa0582120:CDS
GATATATCTGGTTATGACGA+GGG 0.679021 4_2:-47354 Msa0582120:CDS
GAGAGATATGTTGTTGTCCA+CGG 0.680337 4_2:-45811 Msa0582120:CDS
GCTCCACAAACCTGGCATGG+AGG 0.682559 4_2:+42737 None:intergenic
AGTAAAGGATGATGATGATG+AGG 0.690228 4_2:-45491 Msa0582120:CDS
GATGCGGTGGCTTATCAGAG+GGG 0.694056 4_2:-43229 Msa0582120:CDS
TGATTGTATCTCAACGACAG+AGG 0.694496 4_2:-42843 Msa0582120:CDS
TTCGACCAAAGCCTTCACAT+CGG 0.695108 4_2:+47388 None:intergenic
ATAAATTGGAATTCCATCGG+TGG 0.695970 4_2:+46423 None:intergenic
TTACGAGCAAAATGGAAGCG+CGG 0.712829 4_2:-45717 Msa0582120:CDS
GACATTATGGAAGATTCCGG+GGG 0.713451 4_2:+44225 None:intergenic
AGGGCTATAATGGAGAAATG+TGG 0.714646 4_2:-42875 Msa0582120:CDS
TGGGAGCAAGGAAATAAACA+GGG 0.714982 4_2:+48061 None:intergenic
AGCTTCTAGGACAAACATGG+AGG 0.731970 4_2:-42086 Msa0582120:intron
TCACTGACCCTCAACCAATG+GGG 0.743553 4_2:-41484 Msa0582120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAATACACAAGAAAT+GGG + chr4_2:40823-40842 None:intergenic 15.0%
!! TAATAAAAATACACAAGAAA+TGG + chr4_2:40824-40843 None:intergenic 15.0%
!!! TTTTTCTTATTGTTCAAAAT+AGG - chr4_2:41020-41039 Msa0582120:intron 15.0%
!! TTAATGTATGATAGTAATAT+TGG - chr4_2:42597-42616 Msa0582120:CDS 15.0%
!!! TATTTTTTCTCAAATTCAAA+AGG + chr4_2:44154-44173 None:intergenic 15.0%
!!! CTTAATGATTTTTCTTTTTT+TGG - chr4_2:44391-44410 Msa0582120:intron 15.0%
!!! AAAATATTTTACATGATTAG+TGG + chr4_2:45006-45025 None:intergenic 15.0%
!! AAGTTTAACTGAAAAAATAA+TGG + chr4_2:45236-45255 None:intergenic 15.0%
!! ATTTCATTTAGTATAGTTTA+CGG - chr4_2:45265-45284 Msa0582120:CDS 15.0%
!! ATCAAAATAAAATATTCTAG+TGG - chr4_2:45482-45501 Msa0582120:CDS 15.0%
!!! ATTGAATAATTTGTTTTTAC+AGG - chr4_2:46200-46219 Msa0582120:intron 15.0%
!!! TTGAATAATTTGTTTTTACA+GGG - chr4_2:46201-46220 Msa0582120:intron 15.0%
!!! CTCACTTTTTAAAAAAAAAT+TGG - chr4_2:46872-46891 Msa0582120:CDS 15.0%
!! AGAAAATAATTGTGAATTAA+AGG - chr4_2:46897-46916 Msa0582120:CDS 15.0%
!! GAAAATAATTGTGAATTAAA+GGG - chr4_2:46898-46917 Msa0582120:CDS 15.0%
!! AACAAATTAATCAACAATAT+AGG + chr4_2:47695-47714 None:intergenic 15.0%
!! AGATCGTGAAATATAAATAA+GGG + chr4_2:40937-40956 None:intergenic 20.0%
!! TGATCTTATTAAAACAAAGA+AGG - chr4_2:41243-41262 Msa0582120:intron 20.0%
!!! TTATGATCAATTCTTTGAAA+AGG - chr4_2:41606-41625 Msa0582120:CDS 20.0%
!! ATTAACATACAGAAAAGAAA+AGG + chr4_2:42582-42601 None:intergenic 20.0%
!! AAAGCTGATAAACAAAATAT+GGG - chr4_2:43293-43312 Msa0582120:CDS 20.0%
!!! TTTTTCTTTTTTTGGTACTA+AGG - chr4_2:44399-44418 Msa0582120:intron 20.0%
!!! ATATCTTGATTTATGCTTTT+AGG - chr4_2:44521-44540 Msa0582120:intron 20.0%
!! CATATTGTAAAGTTATAACA+GGG + chr4_2:44726-44745 None:intergenic 20.0%
!! TACAAGTAAAAAAAAAACCT+TGG + chr4_2:45066-45085 None:intergenic 20.0%
!!! TTACGGTTGATTAATTTTTT+AGG - chr4_2:45282-45301 Msa0582120:CDS 20.0%
!!! TATTTTATTTTGATATGTGC+TGG + chr4_2:45476-45495 None:intergenic 20.0%
!!! AACTTTGTGTCTTTTAATAA+AGG - chr4_2:46348-46367 Msa0582120:CDS 20.0%
!! TGAGTAATATTAATATCTAC+TGG - chr4_2:47550-47569 Msa0582120:CDS 20.0%
!! AAAAGATGATCAGTAAAAAA+TGG + chr4_2:47827-47846 None:intergenic 20.0%
!!! TCTTTTTCATTTATAAATGC+AGG - chr4_2:47841-47860 Msa0582120:five_prime_UTR 20.0%
!!! CTTTTTCATTTATAAATGCA+GGG - chr4_2:47842-47861 Msa0582120:five_prime_UTR 20.0%
! CAGATCGTGAAATATAAATA+AGG + chr4_2:40938-40957 None:intergenic 25.0%
! ATTGTTCAAAATAGGTGTTA+AGG - chr4_2:41028-41047 Msa0582120:intron 25.0%
! TATTAAAACAAAGAAGGATC+AGG - chr4_2:41249-41268 Msa0582120:intron 25.0%
! AGTCTGTAATTCTTCTATTT+GGG + chr4_2:41330-41349 None:intergenic 25.0%
! AAGTCTGTAATTCTTCTATT+TGG + chr4_2:41331-41350 None:intergenic 25.0%
! TTTATTTATAAGCAGCTCAT+TGG - chr4_2:41793-41812 Msa0582120:intron 25.0%
!!! GAGAAGTTTTATAATAAGCA+GGG + chr4_2:42158-42177 None:intergenic 25.0%
!!! AGAGAAGTTTTATAATAAGC+AGG + chr4_2:42159-42178 None:intergenic 25.0%
! GAAATAGATGTTACAATCTT+TGG - chr4_2:42330-42349 Msa0582120:CDS 25.0%
! TTTATAGCACTCAGATAAAT+TGG + chr4_2:42456-42475 None:intergenic 25.0%
! AAAGAATGGATGATTGAATT+TGG - chr4_2:42474-42493 Msa0582120:CDS 25.0%
! AAGAATGGATGATTGAATTT+GGG - chr4_2:42475-42494 Msa0582120:CDS 25.0%
! CAAAGCTGATAAACAAAATA+TGG - chr4_2:43292-43311 Msa0582120:CDS 25.0%
! AAGCTGATAAACAAAATATG+GGG - chr4_2:43294-43313 Msa0582120:CDS 25.0%
! TATTCAACGTAGTATATATC+AGG + chr4_2:43653-43672 None:intergenic 25.0%
! TGAATATATGTTTGAATCGA+AGG - chr4_2:43667-43686 Msa0582120:intron 25.0%
! GAATATATGTTTGAATCGAA+GGG - chr4_2:43668-43687 Msa0582120:intron 25.0%
!! CTTTTACAGTAATATTCAGT+AGG + chr4_2:43938-43957 None:intergenic 25.0%
!!! ATCCAAATCTAGTTTTGTAT+TGG - chr4_2:44087-44106 Msa0582120:intron 25.0%
!!! AAATCTAGTTTTGTATTGGA+GGG - chr4_2:44091-44110 Msa0582120:intron 25.0%
! AATTTGAGAAAAAATAGAGC+AGG - chr4_2:44158-44177 Msa0582120:intron 25.0%
! ATTTGAGAAAAAATAGAGCA+GGG - chr4_2:44159-44178 Msa0582120:intron 25.0%
! GCATATTGTAAAGTTATAAC+AGG + chr4_2:44727-44746 None:intergenic 25.0%
!! AGATAAATCTGTAAAAGCAT+TGG - chr4_2:44759-44778 Msa0582120:intron 25.0%
!!! CTTTTTATTTTGAAGTAGTG+TGG - chr4_2:44809-44828 Msa0582120:CDS 25.0%
! TCACGGAAAGTAATATAAAT+CGG + chr4_2:44866-44885 None:intergenic 25.0%
! AGCTATCAATATAGAATACA+AGG + chr4_2:45207-45226 None:intergenic 25.0%
! AACATTATGATGCAAGTATA+AGG - chr4_2:45395-45414 Msa0582120:intron 25.0%
! AAAAAGGGAAAATCTAAAGA+GGG - chr4_2:45533-45552 Msa0582120:CDS 25.0%
! TTTCTTTCTATAACGAAAAG+TGG + chr4_2:45684-45703 None:intergenic 25.0%
! ACAATTGCAATGTTATTCTT+AGG - chr4_2:45895-45914 Msa0582120:CDS 25.0%
! TCATAAATGATTGTAATGCA+GGG - chr4_2:45968-45987 Msa0582120:CDS 25.0%
!!! TTTTCTCAAGTTATTTCACT+TGG - chr4_2:46444-46463 Msa0582120:CDS 25.0%
!!! TGCTGATTATTTTGTTCAAA+AGG - chr4_2:46497-46516 Msa0582120:CDS 25.0%
!!! ATTATTTTGTTCAAAAGGTG+AGG - chr4_2:46502-46521 Msa0582120:CDS 25.0%
!!! AAGAAAAAGGGCATTTATAT+GGG - chr4_2:46566-46585 Msa0582120:CDS 25.0%
! TTAACTCAAACTATTTCAAG+GGG + chr4_2:46840-46859 None:intergenic 25.0%
! GTTAACTCAAACTATTTCAA+GGG + chr4_2:46841-46860 None:intergenic 25.0%
! AGTTAACTCAAACTATTTCA+AGG + chr4_2:46842-46861 None:intergenic 25.0%
!! ATTTCTTATGATAGCGTTTA+GGG + chr4_2:47496-47515 None:intergenic 25.0%
! GTTAATTTCCAATTTGGTTA+GGG + chr4_2:47522-47541 None:intergenic 25.0%
! AGTTAATTTCCAATTTGGTT+AGG + chr4_2:47523-47542 None:intergenic 25.0%
! ACCAAATTGGAAATTAACTA+TGG - chr4_2:47524-47543 Msa0582120:CDS 25.0%
! TCCATAGTTAATTTCCAATT+TGG + chr4_2:47528-47547 None:intergenic 25.0%
! CATAGTTTGAAAATTGTGAT+AGG - chr4_2:47780-47799 Msa0582120:exon 25.0%
!! CATAAAATTGATAGCAATCT+GGG + chr4_2:47871-47890 None:intergenic 25.0%
GCAAAATAGAAGGACAAAAA+GGG + chr4_2:40882-40901 None:intergenic 30.0%
TGCAAAATAGAAGGACAAAA+AGG + chr4_2:40883-40902 None:intergenic 30.0%
! TTTTTGTCCTTCTATTTTGC+AGG - chr4_2:40882-40901 Msa0582120:three_prime_UTR 30.0%
AACCAAGGAAAGTAATGTAA+AGG + chr4_2:40979-40998 None:intergenic 30.0%
CATATTCGATAATGAAACCA+AGG + chr4_2:40994-41013 None:intergenic 30.0%
TGCAGCAAGTAAAAATTTCA+AGG - chr4_2:41192-41211 Msa0582120:intron 30.0%
AAGATCAGACTTATCAGATT+TGG + chr4_2:41230-41249 None:intergenic 30.0%
TTTATCCTTCATGATGAATC+TGG - chr4_2:41349-41368 Msa0582120:intron 30.0%
!! ATCAATGATTTGTTCATCAC+TGG - chr4_2:41400-41419 Msa0582120:intron 30.0%
AAAAAACTAACAAAGTCTGC+TGG - chr4_2:41652-41671 Msa0582120:intron 30.0%
ATTCATCAAGACTTATGTCA+GGG + chr4_2:41684-41703 None:intergenic 30.0%
AATTCATCAAGACTTATGTC+AGG + chr4_2:41685-41704 None:intergenic 30.0%
! AAGGAGTTCATTATTTCTCA+GGG - chr4_2:41766-41785 Msa0582120:CDS 30.0%
ATCCTTAAAGTTGCATTTGA+TGG + chr4_2:41931-41950 None:intergenic 30.0%
! TCAAATGCAACTTTAAGGAT+TGG - chr4_2:41931-41950 Msa0582120:intron 30.0%
!! ATAGAATTTGTTAGATGACG+AGG + chr4_2:42094-42113 None:intergenic 30.0%
! TTTTATAATAAGCAGGGAGA+GGG + chr4_2:42152-42171 None:intergenic 30.0%
! TGATTCTAGATTGATTTCCT+TGG - chr4_2:42281-42300 Msa0582120:CDS 30.0%
CAGATAAATTGGAATTCCAT+CGG + chr4_2:42445-42464 None:intergenic 30.0%
ATCTGAGTGCTATAAAAGAA+TGG - chr4_2:42460-42479 Msa0582120:intron 30.0%
!! GCAATAGCTTTATCTACAAA+CGG + chr4_2:42712-42731 None:intergenic 30.0%
TCAACTATCATCAATGAATC+TGG - chr4_2:42744-42763 Msa0582120:intron 30.0%
TACCTGAAAGAAAACAAGTA+TGG + chr4_2:42832-42851 None:intergenic 30.0%
!! TTTTCTTTCAGGTATAGACT+TGG - chr4_2:42838-42857 Msa0582120:CDS 30.0%
! AATCCTTGCAGTTTTCAATA+CGG + chr4_2:42899-42918 None:intergenic 30.0%
AAGCATTATCACATTGTTGA+AGG - chr4_2:42924-42943 Msa0582120:intron 30.0%
ATACATTTCTTCTGATGCAT+TGG - chr4_2:43023-43042 Msa0582120:CDS 30.0%
! TTTTCTTTTGGATACAACAG+GGG + chr4_2:43253-43272 None:intergenic 30.0%
! CTTTTCTTTTGGATACAACA+GGG + chr4_2:43254-43273 None:intergenic 30.0%
!! AGAAAACGCTTTAGTTTGTT+TGG + chr4_2:43487-43506 None:intergenic 30.0%
TAATTGCCTGCTTATAAAGA+AGG + chr4_2:43565-43584 None:intergenic 30.0%
TATAAGCAGGCAATTATTCA+TGG - chr4_2:43569-43588 Msa0582120:intron 30.0%
ATTACTGTAAAAGCTTGTAC+TGG - chr4_2:43945-43964 Msa0582120:intron 30.0%
CTCCAATACAAAACTAGATT+TGG + chr4_2:44092-44111 None:intergenic 30.0%
!!! CAAATCTAGTTTTGTATTGG+AGG - chr4_2:44090-44109 Msa0582120:intron 30.0%
ACAACAATATGAACACACAA+AGG + chr4_2:44466-44485 None:intergenic 30.0%
ATATCTGTACAATCCATAGA+AGG - chr4_2:44570-44589 Msa0582120:CDS 30.0%
AAAGACATTATGGAAGATTC+CGG + chr4_2:44643-44662 None:intergenic 30.0%
! TGCTTTTACAGATTTATCTG+AGG + chr4_2:44758-44777 None:intergenic 30.0%
AAGTAATATAAATCGGTAGC+AGG + chr4_2:44859-44878 None:intergenic 30.0%
TTGACTTTCATCCACTAATA+GGG + chr4_2:45162-45181 None:intergenic 30.0%
! TTTGACTTTCATCCACTAAT+AGG + chr4_2:45163-45182 None:intergenic 30.0%
! TTTTAGGCTACTGTTATTGT+TGG - chr4_2:45298-45317 Msa0582120:intron 30.0%
GAAAAAGGGAAAATCTAAAG+AGG - chr4_2:45532-45551 Msa0582120:CDS 30.0%
! GATGTTTTTCTTTCTAGATC+AGG + chr4_2:45575-45594 None:intergenic 30.0%
AGGTGTTTCATCAACTAAAT+GGG - chr4_2:45803-45822 Msa0582120:CDS 30.0%
TTAATAAACACCAATGCTTC+AGG + chr4_2:45876-45895 None:intergenic 30.0%
GATATGAGAGAGAATATAAC+AGG - chr4_2:45923-45942 Msa0582120:CDS 30.0%
CTCATAAATGATTGTAATGC+AGG - chr4_2:45967-45986 Msa0582120:CDS 30.0%
! TATCCTTTGCTGATTATTTC+CGG - chr4_2:46295-46314 Msa0582120:intron 30.0%
TGTTTCACAGTCAAGAAAAA+GGG - chr4_2:46554-46573 Msa0582120:CDS 30.0%
!! CAAGAAAAAGGGCATTTATA+TGG - chr4_2:46565-46584 Msa0582120:CDS 30.0%
! GACAATGTGATTTTCAATTC+AGG + chr4_2:46651-46670 None:intergenic 30.0%
!!! TTTCTTTTGAAACCATGACA+CGG + chr4_2:47023-47042 None:intergenic 30.0%
TGGTTTCAAAAGAAAATTCG+AGG - chr4_2:47028-47047 Msa0582120:CDS 30.0%
AAAGAAAATTCGAGGCAATA+TGG - chr4_2:47036-47055 Msa0582120:CDS 30.0%
GTTGACTGATCATATATCAA+AGG - chr4_2:47063-47082 Msa0582120:CDS 30.0%
GTAAGAATTCTATCTTGATC+AGG + chr4_2:47425-47444 None:intergenic 30.0%
! CATTTCTTATGATAGCGTTT+AGG + chr4_2:47497-47516 None:intergenic 30.0%
! CTTTTTCCTAACCACATATT+TGG + chr4_2:47755-47774 None:intergenic 30.0%
TAGGAAATTCTCATATCATC+CGG - chr4_2:47799-47818 Msa0582120:five_prime_UTR 30.0%
! CCATAAAATTGATAGCAATC+TGG + chr4_2:47872-47891 None:intergenic 30.0%
! CCAGATTGCTATCAATTTTA+TGG - chr4_2:47869-47888 Msa0582120:five_prime_UTR 30.0%
ATAGAAGGACAAAAAGGGAA+AGG + chr4_2:40877-40896 None:intergenic 35.0%
AGTAATGTAAAGGCAACAGA+GGG + chr4_2:40969-40988 None:intergenic 35.0%
AAGTAATGTAAAGGCAACAG+AGG + chr4_2:40970-40989 None:intergenic 35.0%
TGCCTTTACATTACTTTCCT+TGG - chr4_2:40974-40993 Msa0582120:CDS 35.0%
TCTTCAGTGTTCGAAACAAA+GGG + chr4_2:41073-41092 None:intergenic 35.0%
CTGTAATTCTTCTATTTGGG+CGG + chr4_2:41327-41346 None:intergenic 35.0%
ATTGAATCGTGGGATATATC+TGG - chr4_2:41496-41515 Msa0582120:CDS 35.0%
GATATATCTGGTTATGACGA+GGG - chr4_2:41508-41527 Msa0582120:CDS 35.0%
TCAGTAGAAATCCATATCAC+TGG + chr4_2:41538-41557 None:intergenic 35.0%
! AACTTTTTGTAACTAGCAGC+TGG + chr4_2:41586-41605 None:intergenic 35.0%
TGTAAACTTCAATGCAAGCA+CGG + chr4_2:41633-41652 None:intergenic 35.0%
AGTCTTGATGAATTACTTGC+TGG - chr4_2:41691-41710 Msa0582120:intron 35.0%
! GAAGGAGTTCATTATTTCTC+AGG - chr4_2:41765-41784 Msa0582120:CDS 35.0%
TGCCATCAAATGCAACTTTA+AGG - chr4_2:41926-41945 Msa0582120:intron 35.0%
!! TGCAACTTTAAGGATTGGTT+CGG - chr4_2:41936-41955 Msa0582120:intron 35.0%
TGAAGAAATGAAGGATCAGA+TGG - chr4_2:41969-41988 Msa0582120:intron 35.0%
ACTGGAAATCAAAAAAGCAG+AGG - chr4_2:42052-42071 Msa0582120:intron 35.0%
! GTTTTATAATAAGCAGGGAG+AGG + chr4_2:42153-42172 None:intergenic 35.0%
TTTCATAGGAAGAAGTTCCA+AGG + chr4_2:42301-42320 None:intergenic 35.0%
ATTTCTGAGCAAGGTTTCAT+AGG + chr4_2:42315-42334 None:intergenic 35.0%
!! GTAACATCTATTTCTGAGCA+AGG + chr4_2:42324-42343 None:intergenic 35.0%
GATGTTACAATCTTTGGATC+AGG - chr4_2:42336-42355 Msa0582120:CDS 35.0%
TTCAATCTTGATACAGAGGT+TGG - chr4_2:42387-42406 Msa0582120:intron 35.0%
ATAAATTGGAATTCCATCGG+TGG + chr4_2:42442-42461 None:intergenic 35.0%
!! GTCCATACTTGTTTTCTTTC+AGG - chr4_2:42827-42846 Msa0582120:CDS 35.0%
AAACCGTATTGAAAACTGCA+AGG - chr4_2:42893-42912 Msa0582120:intron 35.0%
!!! TTTTTTGATGACATCTCCGA+AGG + chr4_2:42974-42993 None:intergenic 35.0%
CTTATTGTCTTGACTGAACT+CGG + chr4_2:43001-43020 None:intergenic 35.0%
TCTTCATCAACCATTTGGTA+TGG + chr4_2:43173-43192 None:intergenic 35.0%
CTTCTTCTTCATCAACCATT+TGG + chr4_2:43178-43197 None:intergenic 35.0%
! TTTAAATTTGGCTCACTCCT+TGG + chr4_2:43213-43232 None:intergenic 35.0%
TGAGCCAAATTTAAATCCCA+GGG - chr4_2:43218-43237 Msa0582120:CDS 35.0%
! GCTTTTCTTTTGGATACAAC+AGG + chr4_2:43255-43274 None:intergenic 35.0%
!! GTTTATCAGCTTTGTTGTTG+TGG + chr4_2:43286-43305 None:intergenic 35.0%
ATTACCTCTTCTGAATCCTT+CGG + chr4_2:43342-43361 None:intergenic 35.0%
GGTAATTGCTAGTGAAGTAA+AGG - chr4_2:43356-43375 Msa0582120:CDS 35.0%
! AGTAAAGGATGATGATGATG+AGG - chr4_2:43371-43390 Msa0582120:CDS 35.0%
!! ACTAAAGCGTTTTCTGATGA+CGG - chr4_2:43492-43511 Msa0582120:intron 35.0%
TGGATTCCTTCTTTATAAGC+AGG - chr4_2:43556-43575 Msa0582120:intron 35.0%
GTCAGTTGAAGTAGATGAAT+CGG - chr4_2:43619-43638 Msa0582120:intron 35.0%
TATATGTTTGAATCGAAGGG+TGG - chr4_2:43671-43690 Msa0582120:intron 35.0%
ATATGTTTGAATCGAAGGGT+GGG - chr4_2:43672-43691 Msa0582120:intron 35.0%
GGTGGGAAAAAAATGTTTCA+CGG - chr4_2:43689-43708 Msa0582120:intron 35.0%
GGAAAAAAATGTTTCACGGT+AGG - chr4_2:43693-43712 Msa0582120:intron 35.0%
!! TGTTTTTGACTAATGAGTGC+AGG - chr4_2:43771-43790 Msa0582120:intron 35.0%
!! GTTTTTGACTAATGAGTGCA+GGG - chr4_2:43772-43791 Msa0582120:intron 35.0%
TCATTGCAGATAAAATCGAC+AGG - chr4_2:43879-43898 Msa0582120:intron 35.0%
CATTGCAGATAAAATCGACA+GGG - chr4_2:43880-43899 Msa0582120:intron 35.0%
GCAGAAGAAAGGAAAAAGAA+AGG - chr4_2:43908-43927 Msa0582120:intron 35.0%
!!! AGCTTGTTTTGTTTCCTTCT+TGG + chr4_2:44253-44272 None:intergenic 35.0%
CTACAGATATCAAAGTCAGA+AGG - chr4_2:44283-44302 Msa0582120:CDS 35.0%
TTCTCACTTGATACATCTTC+CGG + chr4_2:44318-44337 None:intergenic 35.0%
AATATGAACACACAAAGGTC+AGG + chr4_2:44461-44480 None:intergenic 35.0%
GACTTGACATTTACCTTCTA+TGG + chr4_2:44586-44605 None:intergenic 35.0%
TAGAAGGTAAATGTCAAGTC+AGG - chr4_2:44586-44605 Msa0582120:CDS 35.0%
AAGACATTATGGAAGATTCC+GGG + chr4_2:44642-44661 None:intergenic 35.0%
GCTCACAGAAAAAGACATTA+TGG + chr4_2:44653-44672 None:intergenic 35.0%
TTTCCAATGTCATACATGTG+TGG - chr4_2:45113-45132 Msa0582120:CDS 35.0%
AAACCACACATGTATGACAT+TGG + chr4_2:45119-45138 None:intergenic 35.0%
GTAAAACTCTACCCTATTAG+TGG - chr4_2:45148-45167 Msa0582120:CDS 35.0%
CTGTTATTGTTGGTATTACG+TGG - chr4_2:45308-45327 Msa0582120:intron 35.0%
TATTGTTGGTATTACGTGGA+TGG - chr4_2:45312-45331 Msa0582120:intron 35.0%
TGAAAAACGTTTAGCAACCT+TGG - chr4_2:45598-45617 Msa0582120:CDS 35.0%
CAGGTGTTTCATCAACTAAA+TGG - chr4_2:45802-45821 Msa0582120:CDS 35.0%
AGTCACTATATTCAACCTTG+TGG + chr4_2:45949-45968 None:intergenic 35.0%
ATTGTAATGCAGGGCTATAA+TGG - chr4_2:45977-45996 Msa0582120:CDS 35.0%
ATCCTTCTCATCAAGTTTAG+AGG + chr4_2:46057-46076 None:intergenic 35.0%
TTAAGTAATTTACCCTTGCC+TGG - chr4_2:46077-46096 Msa0582120:intron 35.0%
TAAGTAATTTACCCTTGCCT+GGG - chr4_2:46078-46097 Msa0582120:intron 35.0%
TTAATGAAATCAACTTGCCC+AGG + chr4_2:46098-46117 None:intergenic 35.0%
!! GGGCAAGTTGATTTCATTAA+CGG - chr4_2:46098-46117 Msa0582120:intron 35.0%
!! CAAGTTGATTTCATTAACGG+AGG - chr4_2:46101-46120 Msa0582120:intron 35.0%
!!! TTGTTTTTACAGGGTTTCTC+TGG - chr4_2:46210-46229 Msa0582120:intron 35.0%
!! TGTTTTTACAGGGTTTCTCT+GGG - chr4_2:46211-46230 Msa0582120:intron 35.0%
ATAGATTTAACACAAGCACC+TGG - chr4_2:46238-46257 Msa0582120:intron 35.0%
GAAGTGAAGCCAAAGTTAAA+CGG + chr4_2:46383-46402 None:intergenic 35.0%
TGGAGTTGAATAGAATCTTG+AGG - chr4_2:46464-46483 Msa0582120:CDS 35.0%
TTTGTTCAAAAGGTGAGGTT+CGG - chr4_2:46507-46526 Msa0582120:CDS 35.0%
GTGTTTCACAGTCAAGAAAA+AGG - chr4_2:46553-46572 Msa0582120:CDS 35.0%
ATAACTGTTCGTGATACCAT+TGG - chr4_2:46729-46748 Msa0582120:CDS 35.0%
! AACATGGAGGTATGTAAAAC+AGG - chr4_2:46789-46808 Msa0582120:CDS 35.0%
GTGAATTAAAGGGACACTAA+TGG - chr4_2:46908-46927 Msa0582120:CDS 35.0%
AGGTCAAACTCTTATACACT+TGG - chr4_2:46970-46989 Msa0582120:CDS 35.0%
!!! TTCTTTTGAAACCATGACAC+GGG + chr4_2:47022-47041 None:intergenic 35.0%
! TTTCAGCTTACCTTTTCATC+TGG + chr4_2:47160-47179 None:intergenic 35.0%
!! AACTTGTTGATTTGATACCG+TGG - chr4_2:47270-47289 Msa0582120:CDS 35.0%
! TAAGAGGCATAATCAATGGA+AGG - chr4_2:47310-47329 Msa0582120:CDS 35.0%
! AAGAGGCATAATCAATGGAA+GGG - chr4_2:47311-47330 Msa0582120:CDS 35.0%
GAATTCTATCTTGATCAGGA+TGG + chr4_2:47421-47440 None:intergenic 35.0%
TAACAGACTTACTTGAGATC+GGG + chr4_2:47462-47481 None:intergenic 35.0%
CTAACAGACTTACTTGAGAT+CGG + chr4_2:47463-47482 None:intergenic 35.0%
GAAATGAACCCTAACCAAAT+TGG - chr4_2:47511-47530 Msa0582120:CDS 35.0%
GATCATGCTATCCAAATATG+TGG - chr4_2:47741-47760 Msa0582120:CDS 35.0%
TGCTATCCAAATATGTGGTT+AGG - chr4_2:47746-47765 Msa0582120:CDS 35.0%
TGATCAGTAAAAAATGGCAC+CGG + chr4_2:47821-47840 None:intergenic 35.0%
ATGATAAGCATGCTTTATGC+AGG + chr4_2:48019-48038 None:intergenic 35.0%
GGATACATCTGATGATCTGA+AGG + chr4_2:40783-40802 None:intergenic 40.0%
TGGGAGCAAGGAAATAAACA+GGG + chr4_2:40804-40823 None:intergenic 40.0%
ATGGGAGCAAGGAAATAAAC+AGG + chr4_2:40805-40824 None:intergenic 40.0%
ATACACAAGAAATGGGAGCA+AGG + chr4_2:40816-40835 None:intergenic 40.0%
CACATTGCCTGCAAAATAGA+AGG + chr4_2:40892-40911 None:intergenic 40.0%
! CTTCTATTTTGCAGGCAATG+TGG - chr4_2:40890-40909 Msa0582120:three_prime_UTR 40.0%
CTCTTCAGTGTTCGAAACAA+AGG + chr4_2:41074-41093 None:intergenic 40.0%
! CTTTGTTTCGAACACTGAAG+AGG - chr4_2:41072-41091 Msa0582120:intron 40.0%
GAACACTGAAGAGGAAGTTA+TGG - chr4_2:41081-41100 Msa0582120:intron 40.0%
! CGTTTAGGCATTTTACGAGT+AGG + chr4_2:41163-41182 None:intergenic 40.0%
GCAGACAAGAAAAAAGAGCA+AGG - chr4_2:41448-41467 Msa0582120:CDS 40.0%
CTTTGGTCGAATTGAATCGT+GGG - chr4_2:41486-41505 Msa0582120:CDS 40.0%
GGATATATCTGGTTATGACG+AGG - chr4_2:41507-41526 Msa0582120:CDS 40.0%
GTAAACTTCAATGCAAGCAC+GGG + chr4_2:41632-41651 None:intergenic 40.0%
AAACTAACAAAGTCTGCTGG+TGG - chr4_2:41655-41674 Msa0582120:intron 40.0%
! AAAGTACTTGCTACCACTCA+TGG + chr4_2:41728-41747 None:intergenic 40.0%
! AGTGGTAGCAAGTACTTTTC+TGG - chr4_2:41730-41749 Msa0582120:CDS 40.0%
!! GCAACTTTAAGGATTGGTTC+GGG - chr4_2:41937-41956 Msa0582120:intron 40.0%
AACCAGGGATGAAGAAATGA+AGG - chr4_2:41960-41979 Msa0582120:intron 40.0%
ATCCTTCATTTCTTCATCCC+TGG + chr4_2:41965-41984 None:intergenic 40.0%
TAGATGACGAGGATGATCTA+GGG + chr4_2:42083-42102 None:intergenic 40.0%
TTAGATGACGAGGATGATCT+AGG + chr4_2:42084-42103 None:intergenic 40.0%
! TAGAAGCATGCTGCATAACT+GGG - chr4_2:42245-42264 Msa0582120:CDS 40.0%
TGGGTTCAATCTTGATACAG+AGG - chr4_2:42383-42402 Msa0582120:intron 40.0%
GATTGAATTTGGGTCGTCTA+TGG - chr4_2:42485-42504 Msa0582120:CDS 40.0%
CATATCCATCCGAACAGATA+TGG - chr4_2:42512-42531 Msa0582120:CDS 40.0%
TAGAGAAGAGATACCATACC+AGG + chr4_2:42538-42557 None:intergenic 40.0%
TTCAATACGGTTTCGTACCA+AGG + chr4_2:42886-42905 None:intergenic 40.0%
GAGAGATATGTTGTTGTCCA+CGG - chr4_2:43051-43070 Msa0582120:CDS 40.0%
AATTTCCAGATGCGAAGATC+AGG - chr4_2:43100-43119 Msa0582120:intron 40.0%
! TTCCATTTTGCTCGTAAGAC+CGG + chr4_2:43142-43161 None:intergenic 40.0%
!! AGAAGAAGAAAGTGTTGCCA+AGG - chr4_2:43193-43212 Msa0582120:intron 40.0%
GTGAGCCAAATTTAAATCCC+AGG - chr4_2:43217-43236 Msa0582120:CDS 40.0%
! AAAGGATGATGATGATGAGG+CGG - chr4_2:43374-43393 Msa0582120:CDS 40.0%
ACAGGAAGAGAATGAAGATG+AGG - chr4_2:43407-43426 Msa0582120:intron 40.0%
AGAGAATGAAGATGAGGATG+CGG - chr4_2:43413-43432 Msa0582120:intron 40.0%
GTTTGTTTGGAAACTGAGTG+CGG + chr4_2:43474-43493 None:intergenic 40.0%
!! TCTGATGACGGAGAATTAGA+TGG - chr4_2:43504-43523 Msa0582120:intron 40.0%
!! CTGATGACGGAGAATTAGAT+GGG - chr4_2:43505-43524 Msa0582120:intron 40.0%
!! CATGGTGAAGTTGTTTCTGT+TGG - chr4_2:43587-43606 Msa0582120:intron 40.0%
ACTAATGAGTGCAGGGATTT+GGG - chr4_2:43779-43798 Msa0582120:intron 40.0%
TAAGCATCCGAAAAACACCT+TGG - chr4_2:43831-43850 Msa0582120:intron 40.0%
AAGCATCCGAAAAACACCTT+GGG - chr4_2:43832-43851 Msa0582120:intron 40.0%
!! CTAAAGAAAGCACCTCTTTC+AGG + chr4_2:43971-43990 None:intergenic 40.0%
CTGTCAATCTTGCAAGTTAC+AGG - chr4_2:44027-44046 Msa0582120:intron 40.0%
GAAAACATCCTTCTCCTCTT+CGG + chr4_2:44056-44075 None:intergenic 40.0%
ATAAGAGTGGGAGGAACATA+GGG - chr4_2:44187-44206 Msa0582120:CDS 40.0%
GGAAGATGTATCAAGTGAGA+AGG - chr4_2:44317-44336 Msa0582120:CDS 40.0%
ATACTGTTCTGATGTGCAAG+AGG - chr4_2:44341-44360 Msa0582120:intron 40.0%
AAAAAGATTGACGTCCCTGA+TGG - chr4_2:44609-44628 Msa0582120:CDS 40.0%
AGACATTATGGAAGATTCCG+GGG + chr4_2:44641-44660 None:intergenic 40.0%
TACTTTCCGTGATTGCTCTA+CGG - chr4_2:44874-44893 Msa0582120:CDS 40.0%
GTGTTACACTGACGAAATCA+AGG - chr4_2:44898-44917 Msa0582120:CDS 40.0%
! TAAACGTCAGCTCTTTGAGA+CGG - chr4_2:45087-45106 Msa0582120:CDS 40.0%
TGCTGCAGCTAGAAAGAAAA+AGG - chr4_2:45517-45536 Msa0582120:CDS 40.0%
GCTGCAGCTAGAAAGAAAAA+GGG - chr4_2:45518-45537 Msa0582120:CDS 40.0%
! TTGGACATTTTTGCAGGATG+CGG - chr4_2:45617-45636 Msa0582120:CDS 40.0%
TGTTACTGCTTTCATGCTTC+AGG - chr4_2:45783-45802 Msa0582120:CDS 40.0%
ATTGAGTATGAAGAACCAGC+TGG - chr4_2:45828-45847 Msa0582120:CDS 40.0%
TTGAGTATGAAGAACCAGCT+GGG - chr4_2:45829-45848 Msa0582120:CDS 40.0%
TAAACACCAATGCTTCAGGA+TGG + chr4_2:45872-45891 None:intergenic 40.0%
AGAGAATATAACAGGCCACA+AGG - chr4_2:45931-45950 Msa0582120:CDS 40.0%
! AGGGCTATAATGGAGAAATG+TGG - chr4_2:45987-46006 Msa0582120:CDS 40.0%
TGATTGTATCTCAACGACAG+AGG - chr4_2:46019-46038 Msa0582120:intron 40.0%
GTCCTCTAAACTTGATGAGA+AGG - chr4_2:46052-46071 Msa0582120:intron 40.0%
! AAAGTATCAACAGCGGCATA+AGG + chr4_2:46166-46185 None:intergenic 40.0%
! TCACCACAAAGTATCAACAG+CGG + chr4_2:46173-46192 None:intergenic 40.0%
AGTTCAGTGTGAGATGATAC+TGG - chr4_2:46266-46285 Msa0582120:intron 40.0%
TTCTCCAACAGGAAATACCT+TGG + chr4_2:46321-46340 None:intergenic 40.0%
ATTTCCTGTTGGAGAATGTG+AGG - chr4_2:46325-46344 Msa0582120:intron 40.0%
! ACAGACGTTCCGTTTAACTT+TGG - chr4_2:46371-46390 Msa0582120:CDS 40.0%
! TTTGGCTTCACTTCTTGAGA+TGG - chr4_2:46389-46408 Msa0582120:CDS 40.0%
TTGGCTTCACTTCTTGAGAT+GGG - chr4_2:46390-46409 Msa0582120:CDS 40.0%
!! ACTTCTTGAGATGGGTTATC+AGG - chr4_2:46398-46417 Msa0582120:CDS 40.0%
!! GAAAAGACATGCATTGGTTC+TGG + chr4_2:46624-46643 None:intergenic 40.0%
CGAACAGTTATTGCACGTAA+CGG + chr4_2:46720-46739 None:intergenic 40.0%
TTTACCTCGATGGATAGAGT+CGG + chr4_2:46950-46969 None:intergenic 40.0%
ACTCTATCCATCGAGGTAAA+AGG - chr4_2:46950-46969 Msa0582120:CDS 40.0%
! AGTTTGACCTTTTACCTCGA+TGG + chr4_2:46960-46979 None:intergenic 40.0%
TTATGCCTCTTAGCAGTGTT+TGG + chr4_2:47302-47321 None:intergenic 40.0%
! CTGCTAAGAGGCATAATCAA+TGG - chr4_2:47306-47325 Msa0582120:CDS 40.0%
AATCAATGGAAGGGACTGTT+TGG - chr4_2:47320-47339 Msa0582120:CDS 40.0%
GCAACATCATACACAAACAC+AGG - chr4_2:47891-47910 Msa0582120:five_prime_UTR 40.0%
ATACACAAACACAGGCAGAT+TGG - chr4_2:47899-47918 Msa0582120:five_prime_UTR 40.0%
! ATGCATCCTAGTCTTCTACT+TGG + chr4_2:47996-48015 None:intergenic 40.0%
AAGCATGCTTATCATGAGCA+AGG - chr4_2:48024-48043 Msa0582120:five_prime_UTR 40.0%
TAAGGACAGCACGAGTAAAG+AGG - chr4_2:41046-41065 Msa0582120:intron 45.0%
! ATTTTACGAGTAGGAGCAGC+AGG + chr4_2:41154-41173 None:intergenic 45.0%
CTGCACCAGATTCATCATGA+AGG + chr4_2:41357-41376 None:intergenic 45.0%
CACTGGACTTATATTGCCAC+TGG - chr4_2:41417-41436 Msa0582120:CDS 45.0%
TTCGACCAAAGCCTTCACAT+CGG + chr4_2:41477-41496 None:intergenic 45.0%
GCTTTGGTCGAATTGAATCG+TGG - chr4_2:41485-41504 Msa0582120:CDS 45.0%
! TGTAACTAGCAGCTGGTTTC+TGG + chr4_2:41579-41598 None:intergenic 45.0%
! TGATGAATTACTTGCTGGCC+TGG - chr4_2:41696-41715 Msa0582120:intron 45.0%
TGGTTTAGACCTGACGTTGA+AGG - chr4_2:41813-41832 Msa0582120:intron 45.0%
ACGTTGAAGGCGAATGACAA+GGG - chr4_2:41826-41845 Msa0582120:intron 45.0%
AAAGCTAGCAAGACTGTTGC+AGG - chr4_2:42020-42039 Msa0582120:intron 45.0%
! TGTTGCAGGAAGAAGAGTAC+TGG - chr4_2:42034-42053 Msa0582120:intron 45.0%
CAGTTATGCAGCATGCTTCT+AGG + chr4_2:42246-42265 None:intergenic 45.0%
! CTAGAAGCATGCTGCATAAC+TGG - chr4_2:42244-42263 Msa0582120:CDS 45.0%
GGTGTAATGACCTCAGATGA+TGG - chr4_2:42357-42376 Msa0582120:intron 45.0%
!! ATGACCTCAGATGATGGAAG+TGG - chr4_2:42363-42382 Msa0582120:intron 45.0%
!! TGACCTCAGATGATGGAAGT+GGG - chr4_2:42364-42383 Msa0582120:intron 45.0%
CATACCAGGCCATATCTGTT+CGG + chr4_2:42524-42543 None:intergenic 45.0%
!! CAAGGAGAGTACTGCTTTGA+TGG + chr4_2:42868-42887 None:intergenic 45.0%
CATCAAAGCAGTACTCTCCT+TGG - chr4_2:42866-42885 Msa0582120:CDS 45.0%
CGAAGGAAAGTCGTGATACA+CGG + chr4_2:42957-42976 None:intergenic 45.0%
CGTGTATCACGACTTTCCTT+CGG - chr4_2:42955-42974 Msa0582120:intron 45.0%
!! TTCTTCTGATGCATTGGCTG+TGG - chr4_2:43029-43048 Msa0582120:CDS 45.0%
GTTGCAGAATTATCTGTCCG+TGG + chr4_2:43071-43090 None:intergenic 45.0%
TTACGAGCAAAATGGAAGCG+CGG - chr4_2:43145-43164 Msa0582120:intron 45.0%
GCTGCCCTGGGATTTAAATT+TGG + chr4_2:43225-43244 None:intergenic 45.0%
TTTAAATCCCAGGGCAGCAA+TGG - chr4_2:43227-43246 Msa0582120:CDS 45.0%
! GGCTCGCATAGCTTTTCTTT+TGG + chr4_2:43265-43284 None:intergenic 45.0%
TTACTCAAACCACTTGCCGA+AGG - chr4_2:43323-43342 Msa0582120:CDS 45.0%
TGACGGAGAATTAGATGGGA+AGG - chr4_2:43509-43528 Msa0582120:intron 45.0%
GACGGAGAATTAGATGGGAA+GGG - chr4_2:43510-43529 Msa0582120:intron 45.0%
ACGGAGAATTAGATGGGAAG+GGG - chr4_2:43511-43530 Msa0582120:intron 45.0%
CATGGTTGTCAGACTGTTCT+TGG - chr4_2:43725-43744 Msa0582120:intron 45.0%
GACTAATGAGTGCAGGGATT+TGG - chr4_2:43778-43797 Msa0582120:intron 45.0%
AGCATCCGAAAAACACCTTG+GGG - chr4_2:43833-43852 Msa0582120:intron 45.0%
ACAGGGAAAGAGCAGAAGAA+AGG - chr4_2:43897-43916 Msa0582120:intron 45.0%
TAGCCTTCCGTTTGATACAC+TGG - chr4_2:43988-44007 Msa0582120:intron 45.0%
AGCCTTCCGTTTGATACACT+GGG - chr4_2:43989-44008 Msa0582120:intron 45.0%
CCTAGACCCAGTGTATCAAA+CGG + chr4_2:43998-44017 None:intergenic 45.0%
CGTTTGATACACTGGGTCTA+GGG - chr4_2:43996-44015 Msa0582120:intron 45.0%
AGCAGGGAACTCATAAGAGT+GGG - chr4_2:44175-44194 Msa0582120:intron 45.0%
CATAAGAGTGGGAGGAACAT+AGG - chr4_2:44186-44205 Msa0582120:CDS 45.0%
TGGCAATGATCTCAAGCACT+TGG + chr4_2:44233-44252 None:intergenic 45.0%
GCTTGAGATCATTGCCAAGA+AGG - chr4_2:44236-44255 Msa0582120:CDS 45.0%
CACTTGATACATCTTCCGGT+CGG + chr4_2:44314-44333 None:intergenic 45.0%
GACATTATGGAAGATTCCGG+GGG + chr4_2:44640-44659 None:intergenic 45.0%
AACACTCCGTAGAGCAATCA+CGG + chr4_2:44883-44902 None:intergenic 45.0%
GTGGCACTTCTCTGTTTACT+TGG + chr4_2:45033-45052 None:intergenic 45.0%
!! AAACGTCAGCTCTTTGAGAC+GGG - chr4_2:45088-45107 Msa0582120:CDS 45.0%
! GCAACCTTGGACATTTTTGC+AGG - chr4_2:45611-45630 Msa0582120:CDS 45.0%
GCATCCTGCAAAAATGTCCA+AGG + chr4_2:45618-45637 None:intergenic 45.0%
AGCTAACCATCCTGAAGCAT+TGG - chr4_2:45863-45882 Msa0582120:CDS 45.0%
AAATCAACTTGCCCAGGCAA+GGG + chr4_2:46092-46111 None:intergenic 45.0%
ATGCCGCTGTTGATACTTTG+TGG - chr4_2:46167-46186 Msa0582120:intron 45.0%
CTCACACTGAACTTTACTCC+AGG + chr4_2:46259-46278 None:intergenic 45.0%
TGGCCGGAAATAATCAGCAA+AGG + chr4_2:46301-46320 None:intergenic 45.0%
! TTGCTGATTATTTCCGGCCA+AGG - chr4_2:46301-46320 Msa0582120:intron 45.0%
AGTTCCTCACATTCTCCAAC+AGG + chr4_2:46332-46351 None:intergenic 45.0%
GGAGCAGAAAAGACATGCAT+TGG + chr4_2:46630-46649 None:intergenic 45.0%
!! TGGAGCTTCTAGGACAAACA+TGG - chr4_2:46773-46792 Msa0582120:CDS 45.0%
!! AGCTTCTAGGACAAACATGG+AGG - chr4_2:46776-46795 Msa0582120:CDS 45.0%
CAGAAAATTCCCAAGAGACC+AGG - chr4_2:47115-47134 Msa0582120:CDS 45.0%
CAATCACAACCTGGTCTCTT+GGG + chr4_2:47127-47146 None:intergenic 45.0%
GCGTGATCTTCCAGATGAAA+AGG - chr4_2:47147-47166 Msa0582120:CDS 45.0%
GCACAGATAAAGCTGTCAAG+TGG - chr4_2:47245-47264 Msa0582120:CDS 45.0%
AATGGAAGGGACTGTTTGGT+AGG - chr4_2:47324-47343 Msa0582120:CDS 45.0%
ATCACTGACCCTCAACCAAT+GGG - chr4_2:47377-47396 Msa0582120:CDS 45.0%
TAACGCAAATGCCAGAAGAG+GGG + chr4_2:47936-47955 None:intergenic 45.0%
CTAACGCAAATGCCAGAAGA+GGG + chr4_2:47937-47956 None:intergenic 45.0%
CTCTTCTGGCATTTGCGTTA+GGG - chr4_2:47936-47955 Msa0582120:five_prime_UTR 45.0%
TGCGTTAGGGACAAAACTCA+AGG - chr4_2:47949-47968 Msa0582120:five_prime_UTR 45.0%
GACAAAACTCAAGGAAGCAG+TGG - chr4_2:47958-47977 Msa0582120:five_prime_UTR 45.0%
AGAGCTCCAAGTAGAAGACT+AGG - chr4_2:47987-48006 Msa0582120:five_prime_UTR 45.0%
TCGCAAGATCGTACGATCTT+GGG + chr4_2:48072-48091 None:intergenic 45.0%
ATCGCAAGATCGTACGATCT+TGG + chr4_2:48073-48092 None:intergenic 45.0%
GAAGAGGAAGTTATGGCTGC+TGG - chr4_2:41088-41107 Msa0582120:intron 50.0%
! GCTGCACTTGCTGATCGTTT+AGG + chr4_2:41178-41197 None:intergenic 50.0%
TTGTCTGCACTTGCTTCCAG+TGG + chr4_2:41436-41455 None:intergenic 50.0%
! AATTACTTGCTGGCCTGGCA+CGG - chr4_2:41701-41720 Msa0582120:intron 50.0%
!! TTCTGGAGCTGCATCTCTGA+AGG - chr4_2:41747-41766 Msa0582120:CDS 50.0%
TGTCATTCGCCTTCAACGTC+AGG + chr4_2:41825-41844 None:intergenic 50.0%
GACGTTGAAGGCGAATGACA+AGG - chr4_2:41825-41844 Msa0582120:intron 50.0%
CGTTGAAGGCGAATGACAAG+GGG - chr4_2:41827-41846 Msa0582120:intron 50.0%
! TCTCTAAGAGCAGCAAGAGC+AGG + chr4_2:41865-41884 None:intergenic 50.0%
!! TAAGGATTGGTTCGGGAACC+AGG - chr4_2:41944-41963 Msa0582120:intron 50.0%
!! AAGGATTGGTTCGGGAACCA+GGG - chr4_2:41945-41964 Msa0582120:intron 50.0%
AGCAGGGAGAGGGTAATCAT+TGG + chr4_2:42142-42161 None:intergenic 50.0%
GAACCCACTTCCATCATCTG+AGG + chr4_2:42370-42389 None:intergenic 50.0%
!! CTCCAGAAGCACTGGAAGAT+TGG + chr4_2:42413-42432 None:intergenic 50.0%
! TTCCAGTGCTTCTGGAGAAC+AGG - chr4_2:42416-42435 Msa0582120:intron 50.0%
CGAACAGATATGGCCTGGTA+TGG - chr4_2:42522-42541 Msa0582120:CDS 50.0%
CACTTCCTGATCTTCGCATC+TGG + chr4_2:43108-43127 None:intergenic 50.0%
!!! GATCAGGAAGTGCCCTTTTG+TGG - chr4_2:43116-43135 Msa0582120:intron 50.0%
TCGTAAGACCGGCCACAAAA+GGG + chr4_2:43131-43150 None:intergenic 50.0%
CTTCTGAATCCTTCGGCAAG+TGG + chr4_2:43335-43354 None:intergenic 50.0%
CTTGCCGAAGGATTCAGAAG+AGG - chr4_2:43335-43354 Msa0582120:CDS 50.0%
GAATGAAGATGAGGATGCGG+AGG - chr4_2:43416-43435 Msa0582120:intron 50.0%
GTGGAGACAGTACTGTTGGA+GGG - chr4_2:43438-43457 Msa0582120:intron 50.0%
CGGAGAATTAGATGGGAAGG+GGG - chr4_2:43512-43531 Msa0582120:intron 50.0%
AATTAGATGGGAAGGGGGTC+CGG - chr4_2:43517-43536 Msa0582120:intron 50.0%
!! CCAGAACTAGTCTTCCCTTC+CGG + chr4_2:43539-43558 None:intergenic 50.0%
TTGGCAATGCAGCTAACGAG+AGG - chr4_2:43744-43763 Msa0582120:intron 50.0%
TGGCAATGCAGCTAACGAGA+GGG - chr4_2:43745-43764 Msa0582120:intron 50.0%
GCATCCGAAAAACACCTTGG+GGG - chr4_2:43834-43853 Msa0582120:intron 50.0%
!! GATGCCCCCAAGGTGTTTTT+CGG + chr4_2:43841-43860 None:intergenic 50.0%
TTTCGATGTTGATGCCCCCA+AGG + chr4_2:43851-43870 None:intergenic 50.0%
!! TTGGGGGCATCAACATCGAA+AGG - chr4_2:43850-43869 Msa0582120:intron 50.0%
! AGCTTGTACTGGCCTGAAAG+AGG - chr4_2:43956-43975 Msa0582120:intron 50.0%
GACCCAGTGTATCAAACGGA+AGG + chr4_2:43994-44013 None:intergenic 50.0%
CCGTTTGATACACTGGGTCT+AGG - chr4_2:43995-44014 Msa0582120:intron 50.0%
CAAGTTACAGGAAGCCGAAG+AGG - chr4_2:44039-44058 Msa0582120:intron 50.0%
GAGCAGGGAACTCATAAGAG+TGG - chr4_2:44174-44193 Msa0582120:intron 50.0%
AGGGAACTCATAAGAGTGGG+AGG - chr4_2:44178-44197 Msa0582120:CDS 50.0%
AGTCAGAAGGTTCTTCCGAC+CGG - chr4_2:44296-44315 Msa0582120:CDS 50.0%
CTCTTGTATGATCCTGCCAC+TGG - chr4_2:44672-44691 Msa0582120:CDS 50.0%
TACCTTCTTGAGTGCTCCAG+TGG + chr4_2:44691-44710 None:intergenic 50.0%
AAACCTTGGCTGCTACGATG+TGG + chr4_2:45052-45071 None:intergenic 50.0%
! GACATTTTTGCAGGATGCGG+TGG - chr4_2:45620-45639 Msa0582120:CDS 50.0%
! GCTTTAAACGCATTCCCAGC+TGG + chr4_2:45846-45865 None:intergenic 50.0%
GAAATCAACTTGCCCAGGCA+AGG + chr4_2:46093-46112 None:intergenic 50.0%
AGTCATGAGCTCCACAAACC+TGG + chr4_2:46136-46155 None:intergenic 50.0%
CCAACAGGAAATACCTTGGC+CGG + chr4_2:46317-46336 None:intergenic 50.0%
! ATCCTTGAGGCTGGAGCTTT+TGG - chr4_2:46531-46550 Msa0582120:CDS 50.0%
ACCATTTGCGGTACTACGGA+CGG + chr4_2:46694-46713 None:intergenic 50.0%
GAGCACCATTTGCGGTACTA+CGG + chr4_2:46698-46717 None:intergenic 50.0%
! ACGTAACGGAGCACCATTTG+CGG + chr4_2:46706-46725 None:intergenic 50.0%
TACAGCTGGGAGTTCACCAA+TGG + chr4_2:46748-46767 None:intergenic 50.0%
ATTGGTGAACTCCCAGCTGT+AGG - chr4_2:46747-46766 Msa0582120:CDS 50.0%
AAGCTCCATTGCCTACAGCT+GGG + chr4_2:46761-46780 None:intergenic 50.0%
CTGTAGGCAATGGAGCTTCT+AGG - chr4_2:46763-46782 Msa0582120:CDS 50.0%
TTCTCCGACTCTATCCATCG+AGG - chr4_2:46943-46962 Msa0582120:CDS 50.0%
CCAATCACAACCTGGTCTCT+TGG + chr4_2:47128-47147 None:intergenic 50.0%
CCAAGAGACCAGGTTGTGAT+TGG - chr4_2:47125-47144 Msa0582120:CDS 50.0%
AGATCACGCCAATCACAACC+TGG + chr4_2:47136-47155 None:intergenic 50.0%
GCTTGCCAAACACTGCTAAG+AGG - chr4_2:47294-47313 Msa0582120:CDS 50.0%
GAAGGGACTGTTTGGTAGGT+TGG - chr4_2:47328-47347 Msa0582120:CDS 50.0%
! GACTGTTTGGTAGGTTGGAC+TGG - chr4_2:47333-47352 Msa0582120:CDS 50.0%
!! TTTGGTAGGTTGGACTGGCA+AGG - chr4_2:47338-47357 Msa0582120:CDS 50.0%
! TGAGGGTCAGTGATGGAAGT+TGG + chr4_2:47371-47390 None:intergenic 50.0%
! CATTGGTTGAGGGTCAGTGA+TGG + chr4_2:47378-47397 None:intergenic 50.0%
CATCACTGACCCTCAACCAA+TGG - chr4_2:47376-47395 Msa0582120:CDS 50.0%
TCACTGACCCTCAACCAATG+GGG - chr4_2:47378-47397 Msa0582120:CDS 50.0%
! CAACCTTCCCCATTGGTTGA+GGG + chr4_2:47388-47407 None:intergenic 50.0%
CACATTCCAACCTTCCCCAT+TGG + chr4_2:47395-47414 None:intergenic 50.0%
TAATGCTGTTCCCCCTCTTC+TGG - chr4_2:47922-47941 Msa0582120:five_prime_UTR 50.0%
AACGCAAATGCCAGAAGAGG+GGG + chr4_2:47935-47954 None:intergenic 50.0%
CCTAACGCAAATGCCAGAAG+AGG + chr4_2:47938-47957 None:intergenic 50.0%
CCTCTTCTGGCATTTGCGTT+AGG - chr4_2:47935-47954 Msa0582120:five_prime_UTR 50.0%
ATGACTGCTGGACAGGAGGA+TGG - chr4_2:41301-41320 Msa0582120:intron 55.0%
! GAGCAAGGTGTCCGATGTGA+AGG - chr4_2:41463-41482 Msa0582120:CDS 55.0%
GGTGTCCGATGTGAAGGCTT+TGG - chr4_2:41469-41488 Msa0582120:CDS 55.0%
!! ACGAGGGTGCTCCAGTGATA+TGG - chr4_2:41524-41543 Msa0582120:CDS 55.0%
GGCCAATCTTCCAGTGCTTC+TGG - chr4_2:42408-42427 Msa0582120:intron 55.0%
CCAGGCCATATCTGTTCGGA+TGG + chr4_2:42520-42539 None:intergenic 55.0%
CCATCCGAACAGATATGGCC+TGG - chr4_2:42517-42536 Msa0582120:CDS 55.0%
!!! AGGAAGTGCCCTTTTGTGGC+CGG - chr4_2:43120-43139 Msa0582120:intron 55.0%
CTCGTAAGACCGGCCACAAA+AGG + chr4_2:43132-43151 None:intergenic 55.0%
GGCCGGTCTTACGAGCAAAA+TGG - chr4_2:43137-43156 Msa0582120:intron 55.0%
AAGCGCGGCACCATACCAAA+TGG - chr4_2:43160-43179 Msa0582120:intron 55.0%
! GGATGATGATGATGAGGCGG+AGG - chr4_2:43377-43396 Msa0582120:CDS 55.0%
! TGATGATGAGGCGGAGGAAC+AGG - chr4_2:43383-43402 Msa0582120:CDS 55.0%
TGAAGATGAGGATGCGGAGG+TGG - chr4_2:43419-43438 Msa0582120:intron 55.0%
GGAGGTGGAGACAGTACTGT+TGG - chr4_2:43434-43453 Msa0582120:intron 55.0%
GGTGGAGACAGTACTGTTGG+AGG - chr4_2:43437-43456 Msa0582120:intron 55.0%
! CCGGAAGGGAAGACTAGTTC+TGG - chr4_2:43536-43555 Msa0582120:intron 55.0%
CACGGTAGGATGATGCAGCA+TGG - chr4_2:43707-43726 Msa0582120:intron 55.0%
CAATGCAGCTAACGAGAGGG+AGG - chr4_2:43748-43767 Msa0582120:intron 55.0%
! GATACACTGGGTCTAGGGTC+TGG - chr4_2:44001-44020 Msa0582120:intron 55.0%
ACAGGAAGCCGAAGAGGAGA+AGG - chr4_2:44045-44064 Msa0582120:intron 55.0%
TTCTTGAGTGCTCCAGTGGC+AGG + chr4_2:44687-44706 None:intergenic 55.0%
! TGCCACTGGAGCACTCAAGA+AGG - chr4_2:44686-44705 Msa0582120:intron 55.0%
AGGATGCGGTGGCTTATCAG+AGG - chr4_2:45631-45650 Msa0582120:CDS 55.0%
GGATGCGGTGGCTTATCAGA+GGG - chr4_2:45632-45651 Msa0582120:CDS 55.0%
GATGCGGTGGCTTATCAGAG+GGG - chr4_2:45633-45652 Msa0582120:CDS 55.0%
TCAGAGGGGTTGCATCAGTC+TGG - chr4_2:45647-45666 Msa0582120:CDS 55.0%
TGAGCTCCACAAACCTGGCA+TGG + chr4_2:46131-46150 None:intergenic 55.0%
! CCGGCCAAGGTATTTCCTGT+TGG - chr4_2:46314-46333 Msa0582120:intron 55.0%
! GGTGAGGTTCGGTATCCTTG+AGG - chr4_2:46518-46537 Msa0582120:CDS 55.0%
! AGGTTCGGTATCCTTGAGGC+TGG - chr4_2:46522-46541 Msa0582120:CDS 55.0%
CACCAAAAGCTCCAGCCTCA+AGG + chr4_2:46536-46555 None:intergenic 55.0%
! TATATGGGCTGCCTCTCCAG+AGG - chr4_2:46581-46600 Msa0582120:CDS 55.0%
!! TGCATTGGTTCTGGCCACTC+TGG + chr4_2:46615-46634 None:intergenic 55.0%
TACTACGGACGGCAGCATAC+TGG + chr4_2:46683-46702 None:intergenic 55.0%
GAACTCCCAGCTGTAGGCAA+TGG - chr4_2:46753-46772 Msa0582120:CDS 55.0%
GAAGCTCCATTGCCTACAGC+TGG + chr4_2:46762-46781 None:intergenic 55.0%
ACCAAAGCGATCCCGTGTCA+TGG - chr4_2:47008-47027 Msa0582120:CDS 55.0%
ACCATGACACGGGATCGCTT+TGG + chr4_2:47012-47031 None:intergenic 55.0%
GCAGTGTTTGGCAAGCACCA+CGG + chr4_2:47290-47309 None:intergenic 55.0%
TGACCCTCAACCAATGGGGA+AGG - chr4_2:47382-47401 Msa0582120:CDS 55.0%
! CCAACCTTCCCCATTGGTTG+AGG + chr4_2:47389-47408 None:intergenic 55.0%
CCTCAACCAATGGGGAAGGT+TGG - chr4_2:47386-47405 Msa0582120:CDS 55.0%
! CTTGCTGTCCGCATGACTGC+TGG - chr4_2:41289-41308 Msa0582120:intron 60.0%
TGTCCGCATGACTGCTGGAC+AGG - chr4_2:41294-41313 Msa0582120:intron 60.0%
CCTCCTGTCCAGCAGTCATG+CGG + chr4_2:41300-41319 None:intergenic 60.0%
TACCACTCATGGACCGTGCC+AGG + chr4_2:41717-41736 None:intergenic 60.0%
! GGCCTGTTCTCCAGAAGCAC+TGG + chr4_2:42421-42440 None:intergenic 60.0%
TCTGGAGAACAGGCCACCGA+TGG - chr4_2:42426-42445 Msa0582120:intron 60.0%
TGAGGCGGAGGAACAGGAAC+AGG - chr4_2:43389-43408 Msa0582120:CDS 60.0%
! GTGCAGGGATTTGGGACTGC+AGG - chr4_2:43787-43806 Msa0582120:intron 60.0%
! TTCCGGGGGCACATCCATCA+GGG + chr4_2:44626-44645 None:intergenic 60.0%
! ATTCCGGGGGCACATCCATC+AGG + chr4_2:44627-44646 None:intergenic 60.0%
GTGCCACATCGTAGCAGCCA+AGG - chr4_2:45046-45065 Msa0582120:CDS 60.0%
TAACGGAGGACCTCCATGCC+AGG - chr4_2:46115-46134 Msa0582120:intron 60.0%
GGACCTCCATGCCAGGTTTG+TGG - chr4_2:46122-46141 Msa0582120:intron 60.0%
GCTCCACAAACCTGGCATGG+AGG + chr4_2:46128-46147 None:intergenic 60.0%
! TGGAAGCACGTCCTCTGGAG+AGG + chr4_2:46595-46614 None:intergenic 60.0%
! CACTCTGGAAGCACGTCCTC+TGG + chr4_2:46600-46619 None:intergenic 60.0%
CAGAGGACGTGCTTCCAGAG+TGG - chr4_2:46598-46617 Msa0582120:CDS 60.0%
GCCGTCCGTAGTACCGCAAA+TGG - chr4_2:46690-46709 Msa0582120:CDS 60.0%
CCGCATGACTGCTGGACAGG+AGG - chr4_2:41297-41316 Msa0582120:intron 65.0%
ACAGGGGCCATTGCTGCCCT+GGG + chr4_2:43237-43256 None:intergenic 65.0%
AACAGGGGCCATTGCTGCCC+TGG + chr4_2:43238-43257 None:intergenic 65.0%
AGATGGGAAGGGGGTCCGGA+AGG - chr4_2:43521-43540 Msa0582120:intron 65.0%
GATGGGAAGGGGGTCCGGAA+GGG - chr4_2:43522-43541 Msa0582120:intron 65.0%
! GTCCCTGATGGATGTGCCCC+CGG - chr4_2:44621-44640 Msa0582120:CDS 65.0%
GGCCTGGCACGGTCCATGAG+TGG - chr4_2:41712-41731 Msa0582120:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 40780 48104 40780 ID=Msa0582120;Name=Msa0582120
chr4_2 mRNA 40780 48104 40780 ID=Msa0582120-mRNA-1;Parent=Msa0582120;Name=Msa0582120-mRNA-1;_AED=0.07;_eAED=0.07;_QI=320|0.66|0.61|1|0.91|0.92|13|148|1408
chr4_2 exon 40780 41021 40780 ID=Msa0582120-mRNA-1:exon:23;Parent=Msa0582120-mRNA-1
chr4_2 exon 41407 41633 41407 ID=Msa0582120-mRNA-1:exon:22;Parent=Msa0582120-mRNA-1
chr4_2 exon 41716 41799 41716 ID=Msa0582120-mRNA-1:exon:21;Parent=Msa0582120-mRNA-1
chr4_2 exon 42087 42365 42087 ID=Msa0582120-mRNA-1:exon:20;Parent=Msa0582120-mRNA-1
chr4_2 exon 42465 42662 42465 ID=Msa0582120-mRNA-1:exon:19;Parent=Msa0582120-mRNA-1
chr4_2 exon 42748 42895 42748 ID=Msa0582120-mRNA-1:exon:18;Parent=Msa0582120-mRNA-1
chr4_2 exon 42968 43079 42968 ID=Msa0582120-mRNA-1:exon:17;Parent=Msa0582120-mRNA-1
chr4_2 exon 43216 43414 43216 ID=Msa0582120-mRNA-1:exon:16;Parent=Msa0582120-mRNA-1
chr4_2 exon 44177 44341 44177 ID=Msa0582120-mRNA-1:exon:15;Parent=Msa0582120-mRNA-1
chr4_2 exon 44522 44704 44522 ID=Msa0582120-mRNA-1:exon:14;Parent=Msa0582120-mRNA-1
chr4_2 exon 44806 45306 44806 ID=Msa0582120-mRNA-1:exon:13;Parent=Msa0582120-mRNA-1
chr4_2 exon 45438 46035 45438 ID=Msa0582120-mRNA-1:exon:12;Parent=Msa0582120-mRNA-1
chr4_2 exon 46346 48104 46346 ID=Msa0582120-mRNA-1:exon:11;Parent=Msa0582120-mRNA-1
chr4_2 five_prime_UTR 47785 48104 47785 ID=Msa0582120-mRNA-1:five_prime_utr;Parent=Msa0582120-mRNA-1
chr4_2 CDS 46346 47784 46346 ID=Msa0582120-mRNA-1:cds;Parent=Msa0582120-mRNA-1
chr4_2 CDS 45438 46035 45438 ID=Msa0582120-mRNA-1:cds;Parent=Msa0582120-mRNA-1
chr4_2 CDS 44806 45306 44806 ID=Msa0582120-mRNA-1:cds;Parent=Msa0582120-mRNA-1
chr4_2 CDS 44522 44704 44522 ID=Msa0582120-mRNA-1:cds;Parent=Msa0582120-mRNA-1
chr4_2 CDS 44177 44341 44177 ID=Msa0582120-mRNA-1:cds;Parent=Msa0582120-mRNA-1
chr4_2 CDS 43216 43414 43216 ID=Msa0582120-mRNA-1:cds;Parent=Msa0582120-mRNA-1
chr4_2 CDS 42968 43079 42968 ID=Msa0582120-mRNA-1:cds;Parent=Msa0582120-mRNA-1
chr4_2 CDS 42748 42895 42748 ID=Msa0582120-mRNA-1:cds;Parent=Msa0582120-mRNA-1
chr4_2 CDS 42465 42662 42465 ID=Msa0582120-mRNA-1:cds;Parent=Msa0582120-mRNA-1
chr4_2 CDS 42087 42365 42087 ID=Msa0582120-mRNA-1:cds;Parent=Msa0582120-mRNA-1
chr4_2 CDS 41716 41799 41716 ID=Msa0582120-mRNA-1:cds;Parent=Msa0582120-mRNA-1
chr4_2 CDS 41407 41633 41407 ID=Msa0582120-mRNA-1:cds;Parent=Msa0582120-mRNA-1
chr4_2 CDS 40928 41021 40928 ID=Msa0582120-mRNA-1:cds;Parent=Msa0582120-mRNA-1
chr4_2 three_prime_UTR 40780 40927 40780 ID=Msa0582120-mRNA-1:three_prime_utr;Parent=Msa0582120-mRNA-1
Gene Sequence

>Msa0582120

ATGGCTGCTGGCAAGCAAAAGAAGCGAAGTTTGTCAGAGAGCAGTGAGCAGCCTGCTGCTCCTACTCGTAAAATGCCTAAACGATCAGCAAGTGCAGCAAGTAAAAATTTCAAGGAGAAGTCTTTTTCCAAATCTGATAAGTCTGATCTTATTAAAACAAAGAAGGATCAGGTTGTAGAAGAAGAATTTCTTGCTGTCCGCATGACTGCTGGACAGGAGGATGGCCGCCCAAATAGAAGAATTACAGACTTTATCCTTCATGATGAATCTGGTGCAGCACAACAACTTGAGATGCTTGAAATCAATGATTTGTTCATCACTGGACTTATATTGCCACTGGAAGCAAGTGCAGACAAGAAAAAAGAGCAAGGTGTCCGATGTGAAGGCTTTGGTCGAATTGAATCGTGGGATATATCTGGTTATGACGAGGGTGCTCCAGTGATATGGATTTCTACTGATATTGCTGATTACGATTGCCAGAAACCAGCTGCTAGTTACAAAAAGTTTTATGATCAATTCTTTGAAAAGGCCCGTGCTTGCATTGAAGTTTACAAAAAACTAACAAAGTCTGCTGGTGGAGACCCTGACATAAGTCTTGATGAATTACTTGCTGGCCTGGCACGGTCCATGAGTGGTAGCAAGTACTTTTCTGGAGCTGCATCTCTGAAGGAGTTCATTATTTCTCAGGGCGATTTTATTTATAAGCAGCTCATTGGTTTAGACCTGACGTTGAAGGCGAATGACAAGGGGTTCACAGAGATTCCTGCTCTTGCTGCTCTTAGAGATGAGAGCAAGAAACAAGCAAACTTTGCAAACGCACAAGTGATGCCATCAAATGCAACTTTAAGGATTGGTTCGGGAACCAGGGATGAAGAAATGAAGGATCAGATGGACTCTGTACATGAAGAAGATGAAGATGCAAAGCTAGCAAGACTGTTGCAGGAAGAAGAGTACTGGAAATCAAAAAAGCAGAGGAAAAACCCTAGATCATCCTCGTCATCTAACAAATTCTATATCAAAATTAATGAAGATGAGATAGCCAATGATTACCCTCTCCCTGCTTATTATAAAACTTCTCTTCAAGAAACAGATGAATTTATTGTTTTTGATAACGACTATGATGTGTATGACACTGAAGATCTTCCTAGAAGCATGCTGCATAACTGGGCTTTATACAACTCTGATTCTAGATTGATTTCCTTGGAACTTCTTCCTATGAAACCTTGCTCAGAAATAGATGTTACAATCTTTGGATCAGGTGTAATGACCTCAGATGATGGAAGTGGGTTCAATCTTGATACAGAGGTTGGCCAATCTTCCAGTGCTTCTGGAGAACAGGCCACCGATGGAATTCCAATTTATCTGAGTGCTATAAAAGAATGGATGATTGAATTTGGGTCGTCTATGGTTTTCATATCCATCCGAACAGATATGGCCTGGTATAGACTTGGCAAACCATCAAAGCAGTACTCTCCTTGGTACGAAACCGTATTGAAAACTGCAAGGATTGCTATAAGCATTATCACATTGTTGAAGGAGCAGAGCCGTGTATCACGACTTTCCTTCGGAGATGTCATCAAAAAAGTATCCGAGTTCAGTCAAGACAATAAGTCATACATTTCTTCTGATGCATTGGCTGTGGAGAGATATGTTGTTGTCCACGGACAGATAATTCTGCAACTGTTTGCAGAATTTCCAGATGCGAAGATCAGGAAGTGCCCTTTTGTGGCCGGTCTTACGAGCAAAATGGAAGCGCGGCACCATACCAAATGGTTGATGAAGAAGAAGAAGAAAGTGTTGCCAAGGAGTGAGCCAAATTTAAATCCCAGGGCAGCAATGGCCCCTGTTGTATCCAAAAGAAAAGCTATGCGAGCCACAACAACAAAGCTGATAAACAAAATATGGGGAGAGTATTACTCAAACCACTTGCCGAAGGATTCAGAAGAGGTAATTGCTAGTGAAGTAAAGGATGATGATGATGAGGCGGAGGAACAGGAACAGGAAGAGAATGAAGATGAGGATGCGGAGGTGGAGACAGCAATTATTCATGGTGAAGTTGTTTCTGTTGGAATATCTGTGTCAGTTGAAGTAGATGAATCGGATGAACTTCCTGATATATACTACGTTGAATATATGTTTGAATCGAAGGGTGGGAAAAAAATGTTTCACGGTAGGATGATGCAGCATGGTTGTCAGACTGTTCTTGGCAATGCAGCTAACGAGAGGGAGGTGTTTTTGACTAATGAGTGCAGGGATTTGGGACTGCAGGATGTTAAGCATATAAATGTTGTAAGCATCCGAAAAACACCTTGGGGGCATCAACATCGAAAGGATAACATCATTGCAGATAAAATCGACAGGGAAAGAGCAGAAGAAAGGAAAAAGAAAGGACTGCCTACTGAATATTACTGTAAAAGCTTGTACTGGCCTGAAAGAGGTGCTTTCTTTAGCCTTCCGTTTGATACACTGGGTCTAGGGTCTGGTGTCTGTCAATCTTGCAAGTTACAGGAAGCCGAAGAGGAGAAGGATGTTTTCAAAGGAACTCATAAGAGTGGGAGGAACATAGGGCTGAGAGCTTATGTTATATGCCAAGTGCTTGAGATCATTGCCAAGAAGGAAACAAAACAAGCTGAAATAAAATCTACAGATATCAAAGTCAGAAGGTTCTTCCGACCGGAAGATGTATCAAGTGAGAAGGCATACTGTTCTGATGTGCAAGAGGTGTATTACAGTGATGAAACATGTACAATATCTGTACAATCCATAGAAGGTAAATGTCAAGTCAGGAAAAAGATTGACGTCCCTGATGGATGTGCCCCCGGAATCTTCCATAATGTCTTTTTCTGTGAGCTCTTGTATGATCCTGCCACTGGAGCACTCAAGAAGTTGCCAGCACATATCAAAATAAAATATTCTAGTGGACACACAGCTGATGCTGCAGCTAGAAAGAAAAAGGGAAAATCTAAAGAGGGAGATAGCATTTCAGAGCCTGATCTAGAAAGAAAAACATCAAATGAAAAACGTTTAGCAACCTTGGACATTTTTGCAGGATGCGGTGGCTTATCAGAGGGGTTGCATCAGTCTGGTGTTTCATCAACTAAATGGGCTATTGAGTATGAAGAACCAGCTGGGAATGCGTTTAAAGCTAACCATCCTGAAGCATTGGTGTTTATTAACAATTGCAATGTTATTCTTAGGGCTATAATGGAGAAATGTGGAGACATAGATGATTGTATCTCAACGACAGAGGCTGCAGAGTTGTCCTCTAAACTTGATGAGAAGGATTTAAGTAATTTACCCTTGCCTGGGCAAGTTGATTTCATTAACGGAGGACCTCCATGCCAGGGTTTCTCTGGGATGAATAGATTTAACACAAGCACCTGGAGTAAAGTTCAGTGTGAGATGATACTGGCATTCTTATCCTTTGCTGATTATTTCCGGCCAAGGTATTTCCTGTTGGAGAATGTGAGGAACTTTGTGTCTTTTAATAAAGGACAGACGTTCCGTTTAACTTTGGCTTCACTTCTTGAGATGGGTTATCAGGTGAGGTTCGGTATCCTTGAGGCTGGAGCTTTTGGTGTTTCACAGTCAAGAAAAAGGGCATTTATATGGGCTGCCTCTCCAGAGGACGTGCTTCCAGAGTGGCCAGAACCAATGCATGTCTTTTCTGCTCCTGAATTGAAAATCACATTGTCAGAAAATGTCCAGTATGCTGCCGTCCGTAGTACCGCAAATGGTGCTCCGTTACGTGCAATAACTGTTCGTGATACCATTGGTGAACTCCCAGCTGTAGGCAATGGAGCTTCTAGGACAAACATGGAGGAGATGAATGAGTTGAACTTGATTCGATGTCAGAAAATTCCCAAGAGACCAGGTTGTGATTGGCGTGATCTTCCAGATGAAAAGATAAAGCTGTCAAGTGGACAACTTGTTGATTTGATACCGTGGTGCTTGCCAAACACTGCTAAGAGGCATAATCAATGGAAGGGACTGTTTGGTAGGTTGGACTGGCAAGGAAACTTTCCAACTTCCATCACTGACCCTCAACCAATGGGGAAGGTTGGAATGTGCTTCCATCCTGATCAAGATAGAATTCTTACTGTTCGTGAATGTGCCCGATCTCAAGTAAGTCTGGCTTCCCAGATTGCTATCAATTTTATGGCAACATCATACACAAACACAGGCAGATTGGTAATGCTGTTCCCCCTCTTCTGGCATTTGCGTTAG
Protein sequence

>Msa0582120

MAAGKQKKRSLSESSEQPAAPTRKMPKRSASAASKNFKEKSFSKSDKSDLIKTKKDQVVEEEFLAVRMTAGQEDGRPNRRITDFILHDESGAAQQLEMLEINDLFITGLILPLEASADKKKEQGVRCEGFGRIESWDISGYDEGAPVIWISTDIADYDCQKPAASYKKFYDQFFEKARACIEVYKKLTKSAGGDPDISLDELLAGLARSMSGSKYFSGAASLKEFIISQGDFIYKQLIGLDLTLKANDKGFTEIPALAALRDESKKQANFANAQVMPSNATLRIGSGTRDEEMKDQMDSVHEEDEDAKLARLLQEEEYWKSKKQRKNPRSSSSSNKFYIKINEDEIANDYPLPAYYKTSLQETDEFIVFDNDYDVYDTEDLPRSMLHNWALYNSDSRLISLELLPMKPCSEIDVTIFGSGVMTSDDGSGFNLDTEVGQSSSASGEQATDGIPIYLSAIKEWMIEFGSSMVFISIRTDMAWYRLGKPSKQYSPWYETVLKTARIAISIITLLKEQSRVSRLSFGDVIKKVSEFSQDNKSYISSDALAVERYVVVHGQIILQLFAEFPDAKIRKCPFVAGLTSKMEARHHTKWLMKKKKKVLPRSEPNLNPRAAMAPVVSKRKAMRATTTKLINKIWGEYYSNHLPKDSEEVIASEVKDDDDEAEEQEQEENEDEDAEVETAIIHGEVVSVGISVSVEVDESDELPDIYYVEYMFESKGGKKMFHGRMMQHGCQTVLGNAANEREVFLTNECRDLGLQDVKHINVVSIRKTPWGHQHRKDNIIADKIDRERAEERKKKGLPTEYYCKSLYWPERGAFFSLPFDTLGLGSGVCQSCKLQEAEEEKDVFKGTHKSGRNIGLRAYVICQVLEIIAKKETKQAEIKSTDIKVRRFFRPEDVSSEKAYCSDVQEVYYSDETCTISVQSIEGKCQVRKKIDVPDGCAPGIFHNVFFCELLYDPATGALKKLPAHIKIKYSSGHTADAAARKKKGKSKEGDSISEPDLERKTSNEKRLATLDIFAGCGGLSEGLHQSGVSSTKWAIEYEEPAGNAFKANHPEALVFINNCNVILRAIMEKCGDIDDCISTTEAAELSSKLDEKDLSNLPLPGQVDFINGGPPCQGFSGMNRFNTSTWSKVQCEMILAFLSFADYFRPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPEDVLPEWPEPMHVFSAPELKITLSENVQYAAVRSTANGAPLRAITVRDTIGELPAVGNGASRTNMEEMNELNLIRCQKIPKRPGCDWRDLPDEKIKLSSGQLVDLIPWCLPNTAKRHNQWKGLFGRLDWQGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQVSLASQIAINFMATSYTNTGRLVMLFPLFWHLR*