AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0590920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0590920 MtrunA17_Chr4g0008601 77.778 585 62 7 40 556 1 585 0.0 810
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 131 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATTGAAACAATCACTTTC+AGG 0.184542 4_2:-14768372 None:intergenic
GTCCTTCATGCACTTCTTCT+TGG 0.205534 4_2:-14768229 None:intergenic
AATTTGCTTGAGTGTTAAAA+TGG 0.242009 4_2:-14768022 None:intergenic
TGGTCAACTGGCACAATCTC+TGG 0.290447 4_2:-14768267 None:intergenic
GAGAAGAGAGAATTGGATCT+AGG 0.292111 4_2:-14766398 None:intergenic
GACGGTGAAGCCATCTGATA+TGG 0.327031 4_2:+14769229 Msa0590920:CDS
GCCGCCCACGAGATACATTA+AGG 0.344571 4_2:-14767783 None:intergenic
CACCAGAGGGCGAGAACTCT+TGG 0.354337 4_2:-14768671 None:intergenic
ATCTCTTCTGATTGGTCAAC+TGG 0.368468 4_2:-14768279 None:intergenic
GTCTTCTTTACTTTCTCTAC+TGG 0.375027 4_2:-14768949 None:intergenic
CAATCTCTGGGGAGGACATT+GGG 0.380065 4_2:-14768254 None:intergenic
CAATCAAATTTAACTTCAAC+AGG 0.389678 4_2:-14768708 None:intergenic
CAATCAAATTTAACTTCAAC+AGG 0.389678 4_2:-14768888 None:intergenic
CAACCTCATCATCCATGTTA+TGG 0.404621 4_2:-14767981 None:intergenic
CAATCAAATTTAACTTCAAC+AGG 0.407071 4_2:-14768528 None:intergenic
CCTGAAAGTGATTGTTTCAA+TGG 0.407091 4_2:+14768372 Msa0590920:CDS
GGTCAACTAGCGCAATCTCT+TGG 0.410909 4_2:-14768806 None:intergenic
AGAAGAGAGAATTGGATCTA+GGG 0.416509 4_2:-14766397 None:intergenic
CTGAGAGTCTCCATGAAATC+AGG 0.417726 4_2:-14768171 None:intergenic
AGAAGATGATCCTGATTTCA+TGG 0.417890 4_2:+14768161 Msa0590920:CDS
CGTCAACTAGCACAATCTCT+TGG 0.430970 4_2:-14768986 None:intergenic
GTGAACTAGCACAGCCTCTT+GGG 0.433261 4_2:-14768445 None:intergenic
TGAAAACTGAACCTGATGTT+TGG 0.434144 4_2:+14767926 Msa0590920:CDS
CATTATATCAAAACTTTCAA+AGG 0.436866 4_2:+14767742 Msa0590920:CDS
ATGAGTTCCCACCGTCTAGC+AGG 0.438424 4_2:+14769033 Msa0590920:CDS
TGGTCAACTAGCACAATCTC+TGG 0.441642 4_2:-14768627 None:intergenic
GGCCAAGAGTTCTCGCCCTC+TGG 0.441838 4_2:+14768669 Msa0590920:CDS
GGTGAACTAGCACAGCCTCT+TGG 0.445129 4_2:-14768446 None:intergenic
TCTCGACCGGAACAGTCATC+TGG 0.447529 4_2:-14768576 None:intergenic
ATGTGGTCTTCTGGGGATGA+TGG 0.450680 4_2:-14768123 None:intergenic
TCATCACATGCCCAAACATC+AGG 0.456881 4_2:-14767937 None:intergenic
TCTCTACTGGAACAGTCATC+TGG 0.458490 4_2:-14768936 None:intergenic
ACCTTGGATAGGGTTGGATT+CGG 0.462342 4_2:-14766436 None:intergenic
CGGTGGAGAGAAGAGAGAAT+TGG 0.463614 4_2:-14766405 None:intergenic
TCTCTACCGGAACAGTCATC+TGG 0.463906 4_2:-14768756 None:intergenic
GTCTTCTTTACTTTCTCTAC+CGG 0.465887 4_2:-14768409 None:intergenic
GTCTTCTTTACTTTCTCTAC+CGG 0.465887 4_2:-14768769 None:intergenic
GGTCAACTGGCACAATCTCT+GGG 0.466778 4_2:-14768266 None:intergenic
CAATCTCTTGGGAAGACATT+GGG 0.467063 4_2:-14768794 None:intergenic
GTCAACTAGCGCAATCTCTT+GGG 0.468261 4_2:-14768805 None:intergenic
CAATCTCTGGGGAAGACATT+GGG 0.468305 4_2:-14768614 None:intergenic
TTTCAAAGGTGGGTTTGTTA+CGG 0.471550 4_2:+14767756 Msa0590920:CDS
CATCTAGTATCTCTTCTGAT+TGG 0.478606 4_2:-14768467 None:intergenic
AAGGATTTCTCACCTTGGAT+AGG 0.479233 4_2:-14766447 None:intergenic
CCCTCTAGTGGAGATTCAGC+TGG 0.480061 4_2:+14768324 Msa0590920:CDS
CGTCTAGTATCTCTTCTGAT+TGG 0.482857 4_2:-14768647 None:intergenic
GAAAACTGAACCTGATGTTT+GGG 0.483915 4_2:+14767927 Msa0590920:CDS
CAGCCTCTTGGGAAGACATT+GGG 0.486265 4_2:-14768434 None:intergenic
AATGAGCCAGATGACTGTTC+TGG 0.486329 4_2:+14769110 Msa0590920:CDS
GATGGGCCAGATGACTGTTC+CGG 0.486994 4_2:+14768570 Msa0590920:CDS
ACAATCTCTGGGGAGGACAT+TGG 0.487714 4_2:-14768255 None:intergenic
CCTGAAAATGATTGTTTCGA+TGG 0.488342 4_2:+14768552 Msa0590920:CDS
GTCAACTAGCACAATCTCTT+GGG 0.491340 4_2:-14768985 None:intergenic
GATGGGCCAGATGACTGTTC+CGG 0.493004 4_2:+14768750 Msa0590920:CDS
AGAATGAATTAAATAACAAA+TGG 0.493400 4_2:+14769180 Msa0590920:CDS
TATATCAAAACTTTCAAAGG+TGG 0.497940 4_2:+14767745 Msa0590920:CDS
ATATCAAAACTTTCAAAGGT+GGG 0.498052 4_2:+14767746 Msa0590920:CDS
AGGATTTCTCACCTTGGATA+GGG 0.500123 4_2:-14766446 None:intergenic
TTTCTCACCTTGGATAGGGT+TGG 0.500613 4_2:-14766442 None:intergenic
GTCTTCTTTACTTTCTCGAC+CGG 0.505077 4_2:-14768589 None:intergenic
GATGACTACAACGCTCCATT+CGG 0.510540 4_2:-14767717 None:intergenic
CGTCTAGTATCTCTTCTGAT+TGG 0.517639 4_2:-14768287 None:intergenic
CGTCTAGTATCTCTTCTGAT+TGG 0.517639 4_2:-14768827 None:intergenic
ACAATCTCTGGGGAAGACAT+TGG 0.518090 4_2:-14768615 None:intergenic
CTGAAAGTGATTGTTTCAAT+GGG 0.519366 4_2:+14768373 Msa0590920:CDS
AATGGGCAAGATGACTGTTC+CGG 0.521162 4_2:+14768390 Msa0590920:CDS
CAAGAGTTCTCGCCCTCTGG+TGG 0.528739 4_2:+14768672 Msa0590920:CDS
GGTCAACTAGCACAATCTCT+GGG 0.528926 4_2:-14768626 None:intergenic
CAAGAGTTCTCGCCCACTAG+TGG 0.533230 4_2:+14768852 Msa0590920:CDS
TCTCTACCAGAACAGTCATC+TGG 0.533768 4_2:-14769116 None:intergenic
CAATCAGAAGAGATACTAGA+TGG 0.539309 4_2:+14768468 Msa0590920:CDS
TACAACGCTCCATTCGGCCT+AGG 0.543426 4_2:-14767711 None:intergenic
CAAGAGTTCTCACCCTCTAG+TGG 0.545884 4_2:+14768312 Msa0590920:CDS
CCTGAAAATGATTGTTCCGA+TGG 0.549174 4_2:+14768732 Msa0590920:CDS
CCTGAAAATGATTGTTCCGA+TGG 0.549174 4_2:+14768912 Msa0590920:CDS
GCAATCTCTTGGGAAGACAT+TGG 0.553704 4_2:-14768795 None:intergenic
CATGTCAAACCTAGGCCGAA+TGG 0.559584 4_2:+14767702 Msa0590920:CDS
GGTTGGATTCGGTGGTGCCG+CGG 0.560555 4_2:-14766425 None:intergenic
ACAGCCTCTTGGGAAGACAT+TGG 0.562222 4_2:-14768435 None:intergenic
TGGATTCGGTGGTGCCGCGG+TGG 0.564348 4_2:-14766422 None:intergenic
AGCAGCTGAATCTCCACTAG+TGG 0.569696 4_2:-14768865 None:intergenic
GATGGCTTCACCGTCTGTAG+TGG 0.570139 4_2:-14769221 None:intergenic
TTGGATAGGGTTGGATTCGG+TGG 0.575206 4_2:-14766433 None:intergenic
GAAATTCTCATGTCAAACCT+AGG 0.575558 4_2:+14767694 Msa0590920:CDS
CTGAAAATGATTGTTTCGAT+GGG 0.579755 4_2:+14768553 Msa0590920:CDS
CGCAGCTGAATCACCACTAG+AGG 0.580370 4_2:-14768505 None:intergenic
GAAGTCCTTAATGTATCTCG+TGG 0.587088 4_2:+14767778 Msa0590920:CDS
CAAGAGTTCTCACCCTCTAG+TGG 0.590843 4_2:+14768492 Msa0590920:CDS
GCCAGCTGAATCTCCACTAG+AGG 0.593732 4_2:-14768325 None:intergenic
AGGAAGAGAAAACGCTCACA+AGG 0.601064 4_2:+14768063 Msa0590920:CDS
TTAAAGATAGCTGCAAAGCA+AGG 0.601950 4_2:+14768043 Msa0590920:CDS
GACCAAGAAGAAGTGCATGA+AGG 0.602772 4_2:+14768227 Msa0590920:CDS
AATCCATAACATGGATGATG+AGG 0.603932 4_2:+14767978 Msa0590920:CDS
CTGAATCCCTGCTAGACGGT+GGG 0.604605 4_2:-14769040 None:intergenic
ATAACAATATCCATATCAGA+TGG 0.610792 4_2:-14769239 None:intergenic
GGAACAGTCATCTGGCCCAT+CGG 0.611163 4_2:-14768928 None:intergenic
ACCGAATCCAACCCTATCCA+AGG 0.613795 4_2:+14766435 Msa0590920:CDS
GTTTGGGCATGTGATGATGA+TGG 0.613837 4_2:+14767943 Msa0590920:CDS
ATCATCCCCAGAAGACCACA+TGG 0.615755 4_2:+14768125 Msa0590920:CDS
ACACAGAAATAACTCTAGAG+TGG 0.616610 4_2:+14769150 Msa0590920:CDS
GCTGAATCCCTGCTAGACGG+TGG 0.619939 4_2:-14769041 None:intergenic
GGAACAGTCATCTGGCCCAT+CGG 0.621661 4_2:-14768748 None:intergenic
GCAGCTGAATCTCCACCAGA+GGG 0.621917 4_2:-14768684 None:intergenic
AACTGGCACAATCTCTGGGG+AGG 0.623394 4_2:-14768262 None:intergenic
CCACCCAATGTCTTCCCAAG+AGG 0.624646 4_2:+14768431 Msa0590920:CDS
GCAGCTGAATCTCCACTAGT+GGG 0.625765 4_2:-14768864 None:intergenic
CCTCTTGGGAAGACATTGGG+TGG 0.626302 4_2:-14768431 None:intergenic
TGTTCAGACAATCCATAACA+TGG 0.627170 4_2:+14767969 Msa0590920:CDS
AACTAGCACAATCTCTTGGG+AGG 0.629465 4_2:-14768982 None:intergenic
TCTCTTGGGAAGACATTGGG+TGG 0.630023 4_2:-14768791 None:intergenic
TCCTTAATGTATCTCGTGGG+CGG 0.631765 4_2:+14767782 Msa0590920:CDS
CCAGCTGAATCTCCACTAGA+GGG 0.631830 4_2:-14768324 None:intergenic
TGAGTTCCCACCGTCTAGCA+GGG 0.632117 4_2:+14769034 Msa0590920:CDS
GCAGCTGAATCCCTGCTAGA+CGG 0.632908 4_2:-14769044 None:intergenic
AGCAGCTGAATCTCCACCAG+AGG 0.633262 4_2:-14768685 None:intergenic
CATAACATGGATGATGAGGT+TGG 0.640089 4_2:+14767982 Msa0590920:CDS
CTGAAAATGATTGTTCCGAT+GGG 0.641922 4_2:+14768733 Msa0590920:CDS
CTGAAAATGATTGTTCCGAT+GGG 0.641922 4_2:+14768913 Msa0590920:CDS
TCTCTGGGGAGGACATTGGG+TGG 0.651120 4_2:-14768251 None:intergenic
GCAGCTGAATCACCACTAGA+GGG 0.651747 4_2:-14768504 None:intergenic
AACATGGATGATGAGGTTGG+TGG 0.652716 4_2:+14767985 Msa0590920:CDS
TCTCTGGGGAAGACATTGGG+TGG 0.656973 4_2:-14768611 None:intergenic
TCTCTTGGGAGGACATTGCG+TGG 0.662855 4_2:-14768971 None:intergenic
CAATCAGAAGAGATACTAGA+CGG 0.664717 4_2:+14768648 Msa0590920:CDS
CAATCAGAAGAGATACTAGA+CGG 0.667769 4_2:+14768288 Msa0590920:CDS
CAATCAGAAGAGATACTAGA+CGG 0.667769 4_2:+14768828 Msa0590920:CDS
GAATCTGAAGAGATACTAGA+CGG 0.671927 4_2:+14769008 Msa0590920:CDS
AAGTCCTTAATGTATCTCGT+GGG 0.675628 4_2:+14767779 Msa0590920:CDS
GTCAACTGGCACAATCTCTG+GGG 0.687753 4_2:-14768265 None:intergenic
GTCAACTAGCACAATCTCTG+GGG 0.706401 4_2:-14768625 None:intergenic
ATTCTCTCTTCTCTCCACCG+CGG 0.809631 4_2:+14766408 Msa0590920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGTTGAATTTTTTTTTTT+AGG - chr4_2:14766518-14766537 None:intergenic 10.0%
!!! TTTAGTGTAATTTTTTTGTT+TGG + chr4_2:14767033-14767052 Msa0590920:intron 15.0%
!!! TTTTTATTTACATTGATTTG+AGG + chr4_2:14767300-14767319 Msa0590920:intron 15.0%
!!! AGATTTTTGAATTTAAGTTT+TGG - chr4_2:14767808-14767827 None:intergenic 15.0%
!! AGAATGAATTAAATAACAAA+TGG + chr4_2:14769180-14769199 Msa0590920:CDS 15.0%
!!! CTTTTTATGTAAGAAAAAGA+CGG - chr4_2:14766286-14766305 None:intergenic 20.0%
!! TAACCTTAAAGATGAATAAA+AGG - chr4_2:14766587-14766606 None:intergenic 20.0%
!! TTTGTTAGAATTCAAAGATT+TGG + chr4_2:14766608-14766627 Msa0590920:intron 20.0%
!! TTGTTAGAATTCAAAGATTT+GGG + chr4_2:14766609-14766628 Msa0590920:intron 20.0%
!!! AGATTTTGTCTAAATTTTGA+TGG + chr4_2:14766898-14766917 Msa0590920:intron 20.0%
!!! TAATTATGTTGATTGATTGT+TGG + chr4_2:14767473-14767492 Msa0590920:intron 20.0%
!! CATTATATCAAAACTTTCAA+AGG + chr4_2:14767742-14767761 Msa0590920:CDS 20.0%
! GAAGATATAGAAATGATGAA+TGG - chr4_2:14766347-14766366 None:intergenic 25.0%
! GTGAAATTGAAAAGAAATGA+AGG - chr4_2:14766469-14766488 None:intergenic 25.0%
! ATACATGAACAAAAACAAGA+CGG - chr4_2:14766547-14766566 None:intergenic 25.0%
! CTGAACAAAACAAACATTAT+GGG - chr4_2:14766880-14766899 None:intergenic 25.0%
! TCTGAACAAAACAAACATTA+TGG - chr4_2:14766881-14766900 None:intergenic 25.0%
!! TTGTATTTTACTTGCATGTT+TGG + chr4_2:14766931-14766950 Msa0590920:intron 25.0%
!!! TTTCTGAATTGTTTGTTTTG+AGG + chr4_2:14767004-14767023 Msa0590920:intron 25.0%
!!! TTTTGATGGTAGTATTACAT+TGG + chr4_2:14767221-14767240 Msa0590920:intron 25.0%
! AATGTGATAGATTTAGTACT+AGG + chr4_2:14767366-14767385 Msa0590920:intron 25.0%
!!! TTTTTTTTTACTGATTCCAG+TGG + chr4_2:14767668-14767687 Msa0590920:intron 25.0%
! TATATCAAAACTTTCAAAGG+TGG + chr4_2:14767745-14767764 Msa0590920:CDS 25.0%
! ATATCAAAACTTTCAAAGGT+GGG + chr4_2:14767746-14767765 Msa0590920:CDS 25.0%
!! AATTTGCTTGAGTGTTAAAA+TGG - chr4_2:14768025-14768044 None:intergenic 25.0%
!! CAATCAAATTTAACTTCAAC+AGG - chr4_2:14768531-14768550 None:intergenic 25.0%
!! CAATCAAATTTAACTTCAAC+AGG - chr4_2:14768531-14768550 None:intergenic 25.0%
!! CAATCAAATTTAACTTCAAC+AGG - chr4_2:14768531-14768550 None:intergenic 25.0%
! ATAACAATATCCATATCAGA+TGG - chr4_2:14769242-14769261 None:intergenic 25.0%
ATGATTTGAATCTTGGTTGT+CGG - chr4_2:14766239-14766258 None:intergenic 30.0%
GCAAATCATGATTTGAATCT+TGG - chr4_2:14766246-14766265 None:intergenic 30.0%
TTTATGTAAGAAAAAGACGG+CGG - chr4_2:14766283-14766302 None:intergenic 30.0%
ATAGAAATGATGAATGGCAA+TGG - chr4_2:14766341-14766360 None:intergenic 30.0%
TACATGAACAAAAACAAGAC+GGG - chr4_2:14766546-14766565 None:intergenic 30.0%
! GTGCCTTTTATTCATCTTTA+AGG + chr4_2:14766581-14766600 Msa0590920:intron 30.0%
TACTGAAGCTATCAAAAACT+AGG - chr4_2:14766767-14766786 None:intergenic 30.0%
!! TTTTGATAGCTTCAGTAAAG+AGG + chr4_2:14766770-14766789 Msa0590920:intron 30.0%
CTGATGATTTGATACCAATT+AGG + chr4_2:14766831-14766850 Msa0590920:intron 30.0%
! ACCAATTAGGTTTTTGATGT+TGG + chr4_2:14766844-14766863 Msa0590920:intron 30.0%
TCCAACATCAAAAACCTAAT+TGG - chr4_2:14766848-14766867 None:intergenic 30.0%
!! CTTCTGAAGCTATAAAACTA+GGG - chr4_2:14767082-14767101 None:intergenic 30.0%
!! TCTTCTGAAGCTATAAAACT+AGG - chr4_2:14767083-14767102 None:intergenic 30.0%
!!! GAGAGGTTTTGAAAAAACAA+AGG + chr4_2:14767101-14767120 Msa0590920:intron 30.0%
AAAACAAAGGATTGTTTGTC+TGG + chr4_2:14767114-14767133 Msa0590920:intron 30.0%
ATCCAATATGAAAACCTCAT+TGG - chr4_2:14767158-14767177 None:intergenic 30.0%
ACAGCAACAAAAAACATCAA+GGG - chr4_2:14767187-14767206 None:intergenic 30.0%
AACAGCAACAAAAAACATCA+AGG - chr4_2:14767188-14767207 None:intergenic 30.0%
! TCAGATTGTCTGAATTTTGA+TGG + chr4_2:14767207-14767226 Msa0590920:intron 30.0%
TGGTACTTTAATTGCTTGTT+TGG + chr4_2:14767241-14767260 Msa0590920:intron 30.0%
TTGATTGTTGGAATTAATGC+AGG + chr4_2:14767485-14767504 Msa0590920:intron 30.0%
AAAAAAAGATGAGTTGCCAT+AGG + chr4_2:14767629-14767648 Msa0590920:intron 30.0%
TACATAGTTAGAAGAACCTA+TGG - chr4_2:14767648-14767667 None:intergenic 30.0%
! AAGATCATGCATTGATGTAA+TGG + chr4_2:14767891-14767910 Msa0590920:intron 30.0%
CTGAAAGTGATTGTTTCAAT+GGG + chr4_2:14768373-14768392 Msa0590920:CDS 30.0%
CTGAAAATGATTGTTTCGAT+GGG + chr4_2:14768553-14768572 Msa0590920:CDS 30.0%
! TTTTCATATTCCACTACAGA+CGG + chr4_2:14769211-14769230 Msa0590920:CDS 30.0%
AGAAGAGAGAATTGGATCTA+GGG - chr4_2:14766400-14766419 None:intergenic 35.0%
AAATGAAGGATTTCTCACCT+TGG - chr4_2:14766455-14766474 None:intergenic 35.0%
!!! TGCATGTTTGGTGTTTTACT+TGG + chr4_2:14766943-14766962 Msa0590920:intron 35.0%
! GTTTTATAGCTTCAGAAGAG+AGG + chr4_2:14767084-14767103 Msa0590920:intron 35.0%
! TTGATAGTTTGAGACCAATG+AGG + chr4_2:14767141-14767160 Msa0590920:intron 35.0%
! GACCAATGAGGTTTTCATAT+TGG + chr4_2:14767153-14767172 Msa0590920:intron 35.0%
! TGCTTCATTTTGCATTTACC+TGG + chr4_2:14767324-14767343 Msa0590920:intron 35.0%
! TTCATTTTGCATTTACCTGG+TGG + chr4_2:14767327-14767346 Msa0590920:intron 35.0%
! GTTTCTTGTCTTGTTCACAA+TGG + chr4_2:14767388-14767407 Msa0590920:intron 35.0%
AGAGACGTAAAATCTTGCTT+TGG + chr4_2:14767429-14767448 Msa0590920:intron 35.0%
! AAAGTGCTTTGTACATTTGC+TGG + chr4_2:14767512-14767531 Msa0590920:intron 35.0%
AAGTGCTTTGTACATTTGCT+GGG + chr4_2:14767513-14767532 Msa0590920:intron 35.0%
!! AGCAGATTTAGTTCTAGAAC+AGG + chr4_2:14767590-14767609 Msa0590920:intron 35.0%
!! AGATTTAGTTCTAGAACAGG+AGG + chr4_2:14767593-14767612 Msa0590920:intron 35.0%
ACATGAGAATTTCAAACCAC+TGG - chr4_2:14767687-14767706 None:intergenic 35.0%
GAAATTCTCATGTCAAACCT+AGG + chr4_2:14767694-14767713 Msa0590920:CDS 35.0%
!! TTTCAAAGGTGGGTTTGTTA+CGG + chr4_2:14767756-14767775 Msa0590920:CDS 35.0%
AAGTCCTTAATGTATCTCGT+GGG + chr4_2:14767779-14767798 Msa0590920:CDS 35.0%
! TGATGATGATGATGATGCAA+AGG + chr4_2:14767864-14767883 Msa0590920:CDS 35.0%
! ATCATGCATTGATGTAATGG+AGG + chr4_2:14767894-14767913 Msa0590920:intron 35.0%
TGAAAACTGAACCTGATGTT+TGG + chr4_2:14767926-14767945 Msa0590920:CDS 35.0%
GAAAACTGAACCTGATGTTT+GGG + chr4_2:14767927-14767946 Msa0590920:CDS 35.0%
TGTTCAGACAATCCATAACA+TGG + chr4_2:14767969-14767988 Msa0590920:CDS 35.0%
AATCCATAACATGGATGATG+AGG + chr4_2:14767978-14767997 Msa0590920:CDS 35.0%
TTAAAGATAGCTGCAAAGCA+AGG + chr4_2:14768043-14768062 Msa0590920:CDS 35.0%
AGAAGATGATCCTGATTTCA+TGG + chr4_2:14768161-14768180 Msa0590920:CDS 35.0%
CAATCAGAAGAGATACTAGA+CGG + chr4_2:14768288-14768307 Msa0590920:CDS 35.0%
CCATTGAAACAATCACTTTC+AGG - chr4_2:14768375-14768394 None:intergenic 35.0%
CCTGAAAGTGATTGTTTCAA+TGG + chr4_2:14768372-14768391 Msa0590920:CDS 35.0%
GTCTTCTTTACTTTCTCTAC+CGG - chr4_2:14768412-14768431 None:intergenic 35.0%
CATCTAGTATCTCTTCTGAT+TGG - chr4_2:14768470-14768489 None:intergenic 35.0%
CAATCAGAAGAGATACTAGA+TGG + chr4_2:14768288-14768307 Msa0590920:CDS 35.0%
! CCATCGAAACAATCATTTTC+AGG - chr4_2:14768555-14768574 None:intergenic 35.0%
CCTGAAAATGATTGTTTCGA+TGG + chr4_2:14768552-14768571 Msa0590920:CDS 35.0%
CAATCAGAAGAGATACTAGA+CGG + chr4_2:14768288-14768307 Msa0590920:CDS 35.0%
CTGAAAATGATTGTTCCGAT+GGG + chr4_2:14768733-14768752 Msa0590920:CDS 35.0%
GTCTTCTTTACTTTCTCTAC+CGG - chr4_2:14768412-14768431 None:intergenic 35.0%
CAATCAGAAGAGATACTAGA+CGG + chr4_2:14768288-14768307 Msa0590920:CDS 35.0%
CTGAAAATGATTGTTCCGAT+GGG + chr4_2:14768733-14768752 Msa0590920:CDS 35.0%
GTCTTCTTTACTTTCTCTAC+TGG - chr4_2:14768412-14768431 None:intergenic 35.0%
GAATCTGAAGAGATACTAGA+CGG + chr4_2:14769008-14769027 Msa0590920:CDS 35.0%
! ACACAGAAATAACTCTAGAG+TGG + chr4_2:14769150-14769169 Msa0590920:CDS 35.0%
!! CGTTTAGTGCTGGTCTTTAA+GGG - chr4_2:14766205-14766224 None:intergenic 40.0%
!! ACGTTTAGTGCTGGTCTTTA+AGG - chr4_2:14766206-14766225 None:intergenic 40.0%
! GAAGTGTTAACGTTTAGTGC+TGG - chr4_2:14766215-14766234 None:intergenic 40.0%
! CATGATTTGCCGCGTTATAA+CGG + chr4_2:14766256-14766275 Msa0590920:intron 40.0%
! ATGATTTGCCGCGTTATAAC+GGG + chr4_2:14766257-14766276 Msa0590920:intron 40.0%
GAGAAGAGAGAATTGGATCT+AGG - chr4_2:14766401-14766420 None:intergenic 40.0%
AGGATTTCTCACCTTGGATA+GGG - chr4_2:14766449-14766468 None:intergenic 40.0%
AAGGATTTCTCACCTTGGAT+AGG - chr4_2:14766450-14766469 None:intergenic 40.0%
GAAGTCCTTAATGTATCTCG+TGG + chr4_2:14767778-14767797 Msa0590920:CDS 40.0%
! TGCATTGATGTAATGGAGGA+AGG + chr4_2:14767898-14767917 Msa0590920:intron 40.0%
CAACCTCATCATCCATGTTA+TGG - chr4_2:14767984-14768003 None:intergenic 40.0%
CATAACATGGATGATGAGGT+TGG + chr4_2:14767982-14768001 Msa0590920:CDS 40.0%
! ATCTCTTCTGATTGGTCAAC+TGG - chr4_2:14768282-14768301 None:intergenic 40.0%
CGTCTAGTATCTCTTCTGAT+TGG - chr4_2:14768290-14768309 None:intergenic 40.0%
GTCTTCTTTACTTTCTCGAC+CGG - chr4_2:14768592-14768611 None:intergenic 40.0%
CGTCTAGTATCTCTTCTGAT+TGG - chr4_2:14768290-14768309 None:intergenic 40.0%
! CCATCGGAACAATCATTTTC+AGG - chr4_2:14768735-14768754 None:intergenic 40.0%
CCTGAAAATGATTGTTCCGA+TGG + chr4_2:14768732-14768751 Msa0590920:CDS 40.0%
CAATCTCTTGGGAAGACATT+GGG - chr4_2:14768797-14768816 None:intergenic 40.0%
CGTCTAGTATCTCTTCTGAT+TGG - chr4_2:14768290-14768309 None:intergenic 40.0%
! CCATCGGAACAATCATTTTC+AGG - chr4_2:14768735-14768754 None:intergenic 40.0%
CCTGAAAATGATTGTTCCGA+TGG + chr4_2:14768732-14768751 Msa0590920:CDS 40.0%
GTCAACTAGCACAATCTCTT+GGG - chr4_2:14768988-14769007 None:intergenic 40.0%
!! AATGGCGCGGCAATTTGTTT+TGG - chr4_2:14766323-14766342 None:intergenic 45.0%
AATGATGAATGGCAATGGCG+CGG - chr4_2:14766336-14766355 None:intergenic 45.0%
ACCTTGGATAGGGTTGGATT+CGG - chr4_2:14766439-14766458 None:intergenic 45.0%
TTTCTCACCTTGGATAGGGT+TGG - chr4_2:14766445-14766464 None:intergenic 45.0%
TTTACCTGGTGGTTGCTTAG+TGG + chr4_2:14767338-14767357 Msa0590920:intron 45.0%
TTTGCTGGGTCAGACACTTA+AGG + chr4_2:14767527-14767546 Msa0590920:intron 45.0%
GATGACTACAACGCTCCATT+CGG - chr4_2:14767720-14767739 None:intergenic 45.0%
TCCTTAATGTATCTCGTGGG+CGG + chr4_2:14767782-14767801 Msa0590920:CDS 45.0%
TCATCACATGCCCAAACATC+AGG - chr4_2:14767940-14767959 None:intergenic 45.0%
! GTTTGGGCATGTGATGATGA+TGG + chr4_2:14767943-14767962 Msa0590920:CDS 45.0%
AACATGGATGATGAGGTTGG+TGG + chr4_2:14767985-14768004 Msa0590920:CDS 45.0%
AGGAAGAGAAAACGCTCACA+AGG + chr4_2:14768063-14768082 Msa0590920:CDS 45.0%
! CTTTTCCATGTGGTCTTCTG+GGG - chr4_2:14768133-14768152 None:intergenic 45.0%
! GCTTTTCCATGTGGTCTTCT+GGG - chr4_2:14768134-14768153 None:intergenic 45.0%
! TGCTTTTCCATGTGGTCTTC+TGG - chr4_2:14768135-14768154 None:intergenic 45.0%
!!! CTGTTTGCTGCTTTTCCATG+TGG - chr4_2:14768143-14768162 None:intergenic 45.0%
CTGAGAGTCTCCATGAAATC+AGG - chr4_2:14768174-14768193 None:intergenic 45.0%
! GACCAAGAAGAAGTGCATGA+AGG + chr4_2:14768227-14768246 Msa0590920:CDS 45.0%
GTCCTTCATGCACTTCTTCT+TGG - chr4_2:14768232-14768251 None:intergenic 45.0%
AATGGGCAAGATGACTGTTC+CGG + chr4_2:14768390-14768409 Msa0590920:CDS 45.0%
! CAATCTCTGGGGAAGACATT+GGG - chr4_2:14768617-14768636 None:intergenic 45.0%
! ACAATCTCTGGGGAAGACAT+TGG - chr4_2:14768618-14768637 None:intergenic 45.0%
GTCAACTAGCACAATCTCTG+GGG - chr4_2:14768628-14768647 None:intergenic 45.0%
GGTCAACTAGCACAATCTCT+GGG - chr4_2:14768629-14768648 None:intergenic 45.0%
TGGTCAACTAGCACAATCTC+TGG - chr4_2:14768630-14768649 None:intergenic 45.0%
GCAATCTCTTGGGAAGACAT+TGG - chr4_2:14768798-14768817 None:intergenic 45.0%
GTCAACTAGCGCAATCTCTT+GGG - chr4_2:14768808-14768827 None:intergenic 45.0%
TCTCTACTGGAACAGTCATC+TGG - chr4_2:14768939-14768958 None:intergenic 45.0%
AACTAGCACAATCTCTTGGG+AGG - chr4_2:14768985-14769004 None:intergenic 45.0%
CGTCAACTAGCACAATCTCT+TGG - chr4_2:14768989-14769008 None:intergenic 45.0%
AATGAGCCAGATGACTGTTC+TGG + chr4_2:14769110-14769129 Msa0590920:CDS 45.0%
TCTCTACCAGAACAGTCATC+TGG - chr4_2:14769119-14769138 None:intergenic 45.0%
CGGTGGAGAGAAGAGAGAAT+TGG - chr4_2:14766408-14766427 None:intergenic 50.0%
ATTCTCTCTTCTCTCCACCG+CGG + chr4_2:14766408-14766427 Msa0590920:CDS 50.0%
TTGGATAGGGTTGGATTCGG+TGG - chr4_2:14766436-14766455 None:intergenic 50.0%
ACCGAATCCAACCCTATCCA+AGG + chr4_2:14766435-14766454 Msa0590920:CDS 50.0%
CATGTCAAACCTAGGCCGAA+TGG + chr4_2:14767702-14767721 Msa0590920:CDS 50.0%
! ATGTGGTCTTCTGGGGATGA+TGG - chr4_2:14768126-14768145 None:intergenic 50.0%
ATCATCCCCAGAAGACCACA+TGG + chr4_2:14768125-14768144 Msa0590920:CDS 50.0%
! CAATCTCTGGGGAGGACATT+GGG - chr4_2:14768257-14768276 None:intergenic 50.0%
! ACAATCTCTGGGGAGGACAT+TGG - chr4_2:14768258-14768277 None:intergenic 50.0%
GTCAACTGGCACAATCTCTG+GGG - chr4_2:14768268-14768287 None:intergenic 50.0%
GGTCAACTGGCACAATCTCT+GGG - chr4_2:14768269-14768288 None:intergenic 50.0%
TGGTCAACTGGCACAATCTC+TGG - chr4_2:14768270-14768289 None:intergenic 50.0%
CAAGAGTTCTCACCCTCTAG+TGG + chr4_2:14768312-14768331 Msa0590920:CDS 50.0%
CCAGCTGAATCTCCACTAGA+GGG - chr4_2:14768327-14768346 None:intergenic 50.0%
CAGCCTCTTGGGAAGACATT+GGG - chr4_2:14768437-14768456 None:intergenic 50.0%
ACAGCCTCTTGGGAAGACAT+TGG - chr4_2:14768438-14768457 None:intergenic 50.0%
GTGAACTAGCACAGCCTCTT+GGG - chr4_2:14768448-14768467 None:intergenic 50.0%
CAAGAGTTCTCACCCTCTAG+TGG + chr4_2:14768312-14768331 Msa0590920:CDS 50.0%
GCAGCTGAATCACCACTAGA+GGG - chr4_2:14768507-14768526 None:intergenic 50.0%
TCTCTACCGGAACAGTCATC+TGG - chr4_2:14768399-14768418 None:intergenic 50.0%
TCTCTTGGGAAGACATTGGG+TGG - chr4_2:14768794-14768813 None:intergenic 50.0%
GGTCAACTAGCGCAATCTCT+TGG - chr4_2:14768809-14768828 None:intergenic 50.0%
GCAGCTGAATCTCCACTAGT+GGG - chr4_2:14768867-14768886 None:intergenic 50.0%
AGCAGCTGAATCTCCACTAG+TGG - chr4_2:14768868-14768887 None:intergenic 50.0%
GACGGTGAAGCCATCTGATA+TGG + chr4_2:14769229-14769248 Msa0590920:CDS 50.0%
!!! CGGCAATTTGTTTTGGCGGG+AGG - chr4_2:14766316-14766335 None:intergenic 55.0%
!!! GCGCGGCAATTTGTTTTGGC+GGG - chr4_2:14766319-14766338 None:intergenic 55.0%
!!! GGCGCGGCAATTTGTTTTGG+CGG - chr4_2:14766320-14766339 None:intergenic 55.0%
AGCACCACTAAGCAACCACC+AGG - chr4_2:14767345-14767364 None:intergenic 55.0%
TACAACGCTCCATTCGGCCT+AGG - chr4_2:14767714-14767733 None:intergenic 55.0%
GCCGCCCACGAGATACATTA+AGG - chr4_2:14767786-14767805 None:intergenic 55.0%
! AACTGGCACAATCTCTGGGG+AGG - chr4_2:14768265-14768284 None:intergenic 55.0%
CCCTCTAGTGGAGATTCAGC+TGG + chr4_2:14768324-14768343 Msa0590920:CDS 55.0%
GCCAGCTGAATCTCCACTAG+AGG - chr4_2:14768328-14768347 None:intergenic 55.0%
CCTCTTGGGAAGACATTGGG+TGG - chr4_2:14768434-14768453 None:intergenic 55.0%
CCACCCAATGTCTTCCCAAG+AGG + chr4_2:14768431-14768450 Msa0590920:CDS 55.0%
GGTGAACTAGCACAGCCTCT+TGG - chr4_2:14768449-14768468 None:intergenic 55.0%
CGCAGCTGAATCACCACTAG+AGG - chr4_2:14768508-14768527 None:intergenic 55.0%
GATGGGCCAGATGACTGTTC+CGG + chr4_2:14768570-14768589 Msa0590920:CDS 55.0%
TCTCGACCGGAACAGTCATC+TGG - chr4_2:14768579-14768598 None:intergenic 55.0%
! TCTCTGGGGAAGACATTGGG+TGG - chr4_2:14768614-14768633 None:intergenic 55.0%
GCAGCTGAATCTCCACCAGA+GGG - chr4_2:14768687-14768706 None:intergenic 55.0%
AGCAGCTGAATCTCCACCAG+AGG - chr4_2:14768688-14768707 None:intergenic 55.0%
GGAACAGTCATCTGGCCCAT+CGG - chr4_2:14768571-14768590 None:intergenic 55.0%
GATGGGCCAGATGACTGTTC+CGG + chr4_2:14768570-14768589 Msa0590920:CDS 55.0%
CAAGAGTTCTCGCCCACTAG+TGG + chr4_2:14768852-14768871 Msa0590920:CDS 55.0%
GGAACAGTCATCTGGCCCAT+CGG - chr4_2:14768571-14768590 None:intergenic 55.0%
TCTCTTGGGAGGACATTGCG+TGG - chr4_2:14768974-14768993 None:intergenic 55.0%
ATGAGTTCCCACCGTCTAGC+AGG + chr4_2:14769033-14769052 Msa0590920:CDS 55.0%
TGAGTTCCCACCGTCTAGCA+GGG + chr4_2:14769034-14769053 Msa0590920:CDS 55.0%
CTGAATCCCTGCTAGACGGT+GGG - chr4_2:14769043-14769062 None:intergenic 55.0%
GCAGCTGAATCCCTGCTAGA+CGG - chr4_2:14769047-14769066 None:intergenic 55.0%
GATGGCTTCACCGTCTGTAG+TGG - chr4_2:14769224-14769243 None:intergenic 55.0%
! TCTCTGGGGAGGACATTGGG+TGG - chr4_2:14768254-14768273 None:intergenic 60.0%
CACCAGAGGGCGAGAACTCT+TGG - chr4_2:14768674-14768693 None:intergenic 60.0%
CAAGAGTTCTCGCCCTCTGG+TGG + chr4_2:14768672-14768691 Msa0590920:CDS 60.0%
GCTGAATCCCTGCTAGACGG+TGG - chr4_2:14769044-14769063 None:intergenic 60.0%
GACGGCGGCCCGTTATAACG+CGG - chr4_2:14766268-14766287 None:intergenic 65.0%
!! GGTTGGATTCGGTGGTGCCG+CGG - chr4_2:14766428-14766447 None:intergenic 65.0%
GGCCAAGAGTTCTCGCCCTC+TGG + chr4_2:14768669-14768688 Msa0590920:CDS 65.0%
!! TGGATTCGGTGGTGCCGCGG+TGG - chr4_2:14766425-14766444 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 14766186 14769262 14766186 ID=Msa0590920;Name=Msa0590920
chr4_2 mRNA 14766186 14769262 14766186 ID=Msa0590920-mRNA-1;Parent=Msa0590920;Name=Msa0590920-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.25|0|0.8|0|0.2|5|0|556
chr4_2 exon 14766186 14766191 14766186 ID=Msa0590920-mRNA-1:exon:4216;Parent=Msa0590920-mRNA-1
chr4_2 exon 14766369 14766456 14766369 ID=Msa0590920-mRNA-1:exon:4217;Parent=Msa0590920-mRNA-1
chr4_2 exon 14767507 14767514 14767507 ID=Msa0590920-mRNA-1:exon:4218;Parent=Msa0590920-mRNA-1
chr4_2 exon 14767688 14767906 14767688 ID=Msa0590920-mRNA-1:exon:4219;Parent=Msa0590920-mRNA-1
chr4_2 exon 14767916 14769262 14767916 ID=Msa0590920-mRNA-1:exon:4220;Parent=Msa0590920-mRNA-1
chr4_2 CDS 14766186 14766191 14766186 ID=Msa0590920-mRNA-1:cds;Parent=Msa0590920-mRNA-1
chr4_2 CDS 14766369 14766456 14766369 ID=Msa0590920-mRNA-1:cds;Parent=Msa0590920-mRNA-1
chr4_2 CDS 14767507 14767514 14767507 ID=Msa0590920-mRNA-1:cds;Parent=Msa0590920-mRNA-1
chr4_2 CDS 14767688 14767906 14767688 ID=Msa0590920-mRNA-1:cds;Parent=Msa0590920-mRNA-1
chr4_2 CDS 14767916 14769262 14767916 ID=Msa0590920-mRNA-1:cds;Parent=Msa0590920-mRNA-1
Gene Sequence

>Msa0590920

ATGGATCGTTTTCACTCTCACACTTTCGAGTTAACCCTAGATCCAATTCTCTCTTCTCTCCACCGCGGCACCACCGAATCCAACCCTATCCAAGGTTGCAAATGGTTTGAAATTCTCATGTCAAACCTAGGCCGAATGGAGCGTTGTAGTCATCTTCATTATATCAAAACTTTCAAAGGTGGGTTTGTTACGGAAGTCCTTAATGTATCTCGTGGGCGGCCAAAACTTAAATTCAAAAATCTTTCAGATATACATGAACGCGAGAGTTTGTTGTCTGATGATGATGATGATGATGCAAAGGCTGTAAGATCATGCATTGATGAAGGAATAGTGAAAACTGAACCTGATGTTTGGGCATGTGATGATGATGGTGATGTTCAGACAATCCATAACATGGATGATGAGGTTGGTGGAGATGATGATATTTCCATTTTAACACTCAAGCAAATTAAAGATAGCTGCAAAGCAAGGAAGAGAAAACGCTCACAAGGTCTCGACTCTTTGAACATAAAAATAAAAATTGATGATCCATCATCCCCAGAAGACCACATGGAAAAGCAGCAAACAGAAGATGATCCTGATTTCATGGAGACTCTCAGTATCTTGAAAACTAAATTATCAAAGAATATGAAGACCAAGAAGAAGTGCATGAAGGACCACCCAATGTCCTCCCCAGAGATTGTGCCAGTTGACCAATCAGAAGAGATACTAGACGGTCAAGAGTTCTCACCCTCTAGTGGAGATTCAGCTGGCTTTGCTGAAGTTAAATTTGATTGTCCTGAAAGTGATTGTTTCAATGGGCAAGATGACTGTTCCGGTAGAGAAAGTAAAGAAGACCACCCAATGTCTTCCCAAGAGGCTGTGCTAGTTCACCAATCAGAAGAGATACTAGATGGTCAAGAGTTCTCACCCTCTAGTGGTGATTCAGCTGCGCCTGTTGAAGTTAAATTTGATTGTCCTGAAAATGATTGTTTCGATGGGCCAGATGACTGTTCCGGTCGAGAAAGTAAAGAAGACCACCCAATGTCTTCCCCAGAGATTGTGCTAGTTGACCAATCAGAAGAGATACTAGACGGCCAAGAGTTCTCGCCCTCTGGTGGAGATTCAGCTGCTCCTGTTGAAGTTAAATTTGATTGTCCTGAAAATGATTGTTCCGATGGGCCAGATGACTGTTCCGGTAGAGAAAGTAAAGAAGACCACCCAATGTCTTCCCAAGAGATTGCGCTAGTTGACCAATCAGAAGAGATACTAGACGGTCAAGAGTTCTCGCCCACTAGTGGAGATTCAGCTGCTCCTGTTGAAGTTAAATTTGATTGTCCTGAAAATGATTGTTCCGATGGGCCAGATGACTGTTCCAGTAGAGAAAGTAAAGAAGACCACGCAATGTCCTCCCAAGAGATTGTGCTAGTTGACGAATCTGAAGAGATACTAGACGGTCATGAGTTCCCACCGTCTAGCAGGGATTCAGCTGCTGTTGTTGAAGTGAATTTTGAGCGTCTTGAGAATGATTGTTTCAATGAGCCAGATGACTGTTCTGGTAGAGAAAGTAAAGAAGACACAGAAATAACTCTAGAGTGGAATTTGCAGAATGAATTAAATAACAAATGGATTGACTTTTTTCATATTCCACTACAGACGGTGAAGCCATCTGATATGGATATTGTTATA

Protein sequence

>Msa0590920

MDRFHSHTFELTLDPILSSLHRGTTESNPIQGCKWFEILMSNLGRMERCSHLHYIKTFKGGFVTEVLNVSRGRPKLKFKNLSDIHERESLLSDDDDDDAKAVRSCIDEGIVKTEPDVWACDDDGDVQTIHNMDDEVGGDDDISILTLKQIKDSCKARKRKRSQGLDSLNIKIKIDDPSSPEDHMEKQQTEDDPDFMETLSILKTKLSKNMKTKKKCMKDHPMSSPEIVPVDQSEEILDGQEFSPSSGDSAGFAEVKFDCPESDCFNGQDDCSGRESKEDHPMSSQEAVLVHQSEEILDGQEFSPSSGDSAAPVEVKFDCPENDCFDGPDDCSGRESKEDHPMSSPEIVLVDQSEEILDGQEFSPSGGDSAAPVEVKFDCPENDCSDGPDDCSGRESKEDHPMSSQEIALVDQSEEILDGQEFSPTSGDSAAPVEVKFDCPENDCSDGPDDCSSRESKEDHAMSSQEIVLVDESEEILDGHEFPPSSRDSAAVVEVNFERLENDCFNEPDDCSGRESKEDTEITLEWNLQNELNNKWIDFFHIPLQTVKPSDMDIVI