Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0590920 | XP_013454909.1 | 77.778 | 585 | 62 | 7 | 40 | 556 | 1 | 585 | 0.0 | 810 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0556440 | Msa0590920 | 0.801842 | 7.441359e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0590920 | MtrunA17_Chr4g0008601 | 77.778 | 585 | 62 | 7 | 40 | 556 | 1 | 585 | 0.0 | 810 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 131 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCATTGAAACAATCACTTTC+AGG | 0.184542 | 4_2:-14768372 | None:intergenic |
GTCCTTCATGCACTTCTTCT+TGG | 0.205534 | 4_2:-14768229 | None:intergenic |
AATTTGCTTGAGTGTTAAAA+TGG | 0.242009 | 4_2:-14768022 | None:intergenic |
TGGTCAACTGGCACAATCTC+TGG | 0.290447 | 4_2:-14768267 | None:intergenic |
GAGAAGAGAGAATTGGATCT+AGG | 0.292111 | 4_2:-14766398 | None:intergenic |
GACGGTGAAGCCATCTGATA+TGG | 0.327031 | 4_2:+14769229 | Msa0590920:CDS |
GCCGCCCACGAGATACATTA+AGG | 0.344571 | 4_2:-14767783 | None:intergenic |
CACCAGAGGGCGAGAACTCT+TGG | 0.354337 | 4_2:-14768671 | None:intergenic |
ATCTCTTCTGATTGGTCAAC+TGG | 0.368468 | 4_2:-14768279 | None:intergenic |
GTCTTCTTTACTTTCTCTAC+TGG | 0.375027 | 4_2:-14768949 | None:intergenic |
CAATCTCTGGGGAGGACATT+GGG | 0.380065 | 4_2:-14768254 | None:intergenic |
CAATCAAATTTAACTTCAAC+AGG | 0.389678 | 4_2:-14768708 | None:intergenic |
CAATCAAATTTAACTTCAAC+AGG | 0.389678 | 4_2:-14768888 | None:intergenic |
CAACCTCATCATCCATGTTA+TGG | 0.404621 | 4_2:-14767981 | None:intergenic |
CAATCAAATTTAACTTCAAC+AGG | 0.407071 | 4_2:-14768528 | None:intergenic |
CCTGAAAGTGATTGTTTCAA+TGG | 0.407091 | 4_2:+14768372 | Msa0590920:CDS |
GGTCAACTAGCGCAATCTCT+TGG | 0.410909 | 4_2:-14768806 | None:intergenic |
AGAAGAGAGAATTGGATCTA+GGG | 0.416509 | 4_2:-14766397 | None:intergenic |
CTGAGAGTCTCCATGAAATC+AGG | 0.417726 | 4_2:-14768171 | None:intergenic |
AGAAGATGATCCTGATTTCA+TGG | 0.417890 | 4_2:+14768161 | Msa0590920:CDS |
CGTCAACTAGCACAATCTCT+TGG | 0.430970 | 4_2:-14768986 | None:intergenic |
GTGAACTAGCACAGCCTCTT+GGG | 0.433261 | 4_2:-14768445 | None:intergenic |
TGAAAACTGAACCTGATGTT+TGG | 0.434144 | 4_2:+14767926 | Msa0590920:CDS |
CATTATATCAAAACTTTCAA+AGG | 0.436866 | 4_2:+14767742 | Msa0590920:CDS |
ATGAGTTCCCACCGTCTAGC+AGG | 0.438424 | 4_2:+14769033 | Msa0590920:CDS |
TGGTCAACTAGCACAATCTC+TGG | 0.441642 | 4_2:-14768627 | None:intergenic |
GGCCAAGAGTTCTCGCCCTC+TGG | 0.441838 | 4_2:+14768669 | Msa0590920:CDS |
GGTGAACTAGCACAGCCTCT+TGG | 0.445129 | 4_2:-14768446 | None:intergenic |
TCTCGACCGGAACAGTCATC+TGG | 0.447529 | 4_2:-14768576 | None:intergenic |
ATGTGGTCTTCTGGGGATGA+TGG | 0.450680 | 4_2:-14768123 | None:intergenic |
TCATCACATGCCCAAACATC+AGG | 0.456881 | 4_2:-14767937 | None:intergenic |
TCTCTACTGGAACAGTCATC+TGG | 0.458490 | 4_2:-14768936 | None:intergenic |
ACCTTGGATAGGGTTGGATT+CGG | 0.462342 | 4_2:-14766436 | None:intergenic |
CGGTGGAGAGAAGAGAGAAT+TGG | 0.463614 | 4_2:-14766405 | None:intergenic |
TCTCTACCGGAACAGTCATC+TGG | 0.463906 | 4_2:-14768756 | None:intergenic |
GTCTTCTTTACTTTCTCTAC+CGG | 0.465887 | 4_2:-14768409 | None:intergenic |
GTCTTCTTTACTTTCTCTAC+CGG | 0.465887 | 4_2:-14768769 | None:intergenic |
GGTCAACTGGCACAATCTCT+GGG | 0.466778 | 4_2:-14768266 | None:intergenic |
CAATCTCTTGGGAAGACATT+GGG | 0.467063 | 4_2:-14768794 | None:intergenic |
GTCAACTAGCGCAATCTCTT+GGG | 0.468261 | 4_2:-14768805 | None:intergenic |
CAATCTCTGGGGAAGACATT+GGG | 0.468305 | 4_2:-14768614 | None:intergenic |
TTTCAAAGGTGGGTTTGTTA+CGG | 0.471550 | 4_2:+14767756 | Msa0590920:CDS |
CATCTAGTATCTCTTCTGAT+TGG | 0.478606 | 4_2:-14768467 | None:intergenic |
AAGGATTTCTCACCTTGGAT+AGG | 0.479233 | 4_2:-14766447 | None:intergenic |
CCCTCTAGTGGAGATTCAGC+TGG | 0.480061 | 4_2:+14768324 | Msa0590920:CDS |
CGTCTAGTATCTCTTCTGAT+TGG | 0.482857 | 4_2:-14768647 | None:intergenic |
GAAAACTGAACCTGATGTTT+GGG | 0.483915 | 4_2:+14767927 | Msa0590920:CDS |
CAGCCTCTTGGGAAGACATT+GGG | 0.486265 | 4_2:-14768434 | None:intergenic |
AATGAGCCAGATGACTGTTC+TGG | 0.486329 | 4_2:+14769110 | Msa0590920:CDS |
GATGGGCCAGATGACTGTTC+CGG | 0.486994 | 4_2:+14768570 | Msa0590920:CDS |
ACAATCTCTGGGGAGGACAT+TGG | 0.487714 | 4_2:-14768255 | None:intergenic |
CCTGAAAATGATTGTTTCGA+TGG | 0.488342 | 4_2:+14768552 | Msa0590920:CDS |
GTCAACTAGCACAATCTCTT+GGG | 0.491340 | 4_2:-14768985 | None:intergenic |
GATGGGCCAGATGACTGTTC+CGG | 0.493004 | 4_2:+14768750 | Msa0590920:CDS |
AGAATGAATTAAATAACAAA+TGG | 0.493400 | 4_2:+14769180 | Msa0590920:CDS |
TATATCAAAACTTTCAAAGG+TGG | 0.497940 | 4_2:+14767745 | Msa0590920:CDS |
ATATCAAAACTTTCAAAGGT+GGG | 0.498052 | 4_2:+14767746 | Msa0590920:CDS |
AGGATTTCTCACCTTGGATA+GGG | 0.500123 | 4_2:-14766446 | None:intergenic |
TTTCTCACCTTGGATAGGGT+TGG | 0.500613 | 4_2:-14766442 | None:intergenic |
GTCTTCTTTACTTTCTCGAC+CGG | 0.505077 | 4_2:-14768589 | None:intergenic |
GATGACTACAACGCTCCATT+CGG | 0.510540 | 4_2:-14767717 | None:intergenic |
CGTCTAGTATCTCTTCTGAT+TGG | 0.517639 | 4_2:-14768287 | None:intergenic |
CGTCTAGTATCTCTTCTGAT+TGG | 0.517639 | 4_2:-14768827 | None:intergenic |
ACAATCTCTGGGGAAGACAT+TGG | 0.518090 | 4_2:-14768615 | None:intergenic |
CTGAAAGTGATTGTTTCAAT+GGG | 0.519366 | 4_2:+14768373 | Msa0590920:CDS |
AATGGGCAAGATGACTGTTC+CGG | 0.521162 | 4_2:+14768390 | Msa0590920:CDS |
CAAGAGTTCTCGCCCTCTGG+TGG | 0.528739 | 4_2:+14768672 | Msa0590920:CDS |
GGTCAACTAGCACAATCTCT+GGG | 0.528926 | 4_2:-14768626 | None:intergenic |
CAAGAGTTCTCGCCCACTAG+TGG | 0.533230 | 4_2:+14768852 | Msa0590920:CDS |
TCTCTACCAGAACAGTCATC+TGG | 0.533768 | 4_2:-14769116 | None:intergenic |
CAATCAGAAGAGATACTAGA+TGG | 0.539309 | 4_2:+14768468 | Msa0590920:CDS |
TACAACGCTCCATTCGGCCT+AGG | 0.543426 | 4_2:-14767711 | None:intergenic |
CAAGAGTTCTCACCCTCTAG+TGG | 0.545884 | 4_2:+14768312 | Msa0590920:CDS |
CCTGAAAATGATTGTTCCGA+TGG | 0.549174 | 4_2:+14768732 | Msa0590920:CDS |
CCTGAAAATGATTGTTCCGA+TGG | 0.549174 | 4_2:+14768912 | Msa0590920:CDS |
GCAATCTCTTGGGAAGACAT+TGG | 0.553704 | 4_2:-14768795 | None:intergenic |
CATGTCAAACCTAGGCCGAA+TGG | 0.559584 | 4_2:+14767702 | Msa0590920:CDS |
GGTTGGATTCGGTGGTGCCG+CGG | 0.560555 | 4_2:-14766425 | None:intergenic |
ACAGCCTCTTGGGAAGACAT+TGG | 0.562222 | 4_2:-14768435 | None:intergenic |
TGGATTCGGTGGTGCCGCGG+TGG | 0.564348 | 4_2:-14766422 | None:intergenic |
AGCAGCTGAATCTCCACTAG+TGG | 0.569696 | 4_2:-14768865 | None:intergenic |
GATGGCTTCACCGTCTGTAG+TGG | 0.570139 | 4_2:-14769221 | None:intergenic |
TTGGATAGGGTTGGATTCGG+TGG | 0.575206 | 4_2:-14766433 | None:intergenic |
GAAATTCTCATGTCAAACCT+AGG | 0.575558 | 4_2:+14767694 | Msa0590920:CDS |
CTGAAAATGATTGTTTCGAT+GGG | 0.579755 | 4_2:+14768553 | Msa0590920:CDS |
CGCAGCTGAATCACCACTAG+AGG | 0.580370 | 4_2:-14768505 | None:intergenic |
GAAGTCCTTAATGTATCTCG+TGG | 0.587088 | 4_2:+14767778 | Msa0590920:CDS |
CAAGAGTTCTCACCCTCTAG+TGG | 0.590843 | 4_2:+14768492 | Msa0590920:CDS |
GCCAGCTGAATCTCCACTAG+AGG | 0.593732 | 4_2:-14768325 | None:intergenic |
AGGAAGAGAAAACGCTCACA+AGG | 0.601064 | 4_2:+14768063 | Msa0590920:CDS |
TTAAAGATAGCTGCAAAGCA+AGG | 0.601950 | 4_2:+14768043 | Msa0590920:CDS |
GACCAAGAAGAAGTGCATGA+AGG | 0.602772 | 4_2:+14768227 | Msa0590920:CDS |
AATCCATAACATGGATGATG+AGG | 0.603932 | 4_2:+14767978 | Msa0590920:CDS |
CTGAATCCCTGCTAGACGGT+GGG | 0.604605 | 4_2:-14769040 | None:intergenic |
ATAACAATATCCATATCAGA+TGG | 0.610792 | 4_2:-14769239 | None:intergenic |
GGAACAGTCATCTGGCCCAT+CGG | 0.611163 | 4_2:-14768928 | None:intergenic |
ACCGAATCCAACCCTATCCA+AGG | 0.613795 | 4_2:+14766435 | Msa0590920:CDS |
GTTTGGGCATGTGATGATGA+TGG | 0.613837 | 4_2:+14767943 | Msa0590920:CDS |
ATCATCCCCAGAAGACCACA+TGG | 0.615755 | 4_2:+14768125 | Msa0590920:CDS |
ACACAGAAATAACTCTAGAG+TGG | 0.616610 | 4_2:+14769150 | Msa0590920:CDS |
GCTGAATCCCTGCTAGACGG+TGG | 0.619939 | 4_2:-14769041 | None:intergenic |
GGAACAGTCATCTGGCCCAT+CGG | 0.621661 | 4_2:-14768748 | None:intergenic |
GCAGCTGAATCTCCACCAGA+GGG | 0.621917 | 4_2:-14768684 | None:intergenic |
AACTGGCACAATCTCTGGGG+AGG | 0.623394 | 4_2:-14768262 | None:intergenic |
CCACCCAATGTCTTCCCAAG+AGG | 0.624646 | 4_2:+14768431 | Msa0590920:CDS |
GCAGCTGAATCTCCACTAGT+GGG | 0.625765 | 4_2:-14768864 | None:intergenic |
CCTCTTGGGAAGACATTGGG+TGG | 0.626302 | 4_2:-14768431 | None:intergenic |
TGTTCAGACAATCCATAACA+TGG | 0.627170 | 4_2:+14767969 | Msa0590920:CDS |
AACTAGCACAATCTCTTGGG+AGG | 0.629465 | 4_2:-14768982 | None:intergenic |
TCTCTTGGGAAGACATTGGG+TGG | 0.630023 | 4_2:-14768791 | None:intergenic |
TCCTTAATGTATCTCGTGGG+CGG | 0.631765 | 4_2:+14767782 | Msa0590920:CDS |
CCAGCTGAATCTCCACTAGA+GGG | 0.631830 | 4_2:-14768324 | None:intergenic |
TGAGTTCCCACCGTCTAGCA+GGG | 0.632117 | 4_2:+14769034 | Msa0590920:CDS |
GCAGCTGAATCCCTGCTAGA+CGG | 0.632908 | 4_2:-14769044 | None:intergenic |
AGCAGCTGAATCTCCACCAG+AGG | 0.633262 | 4_2:-14768685 | None:intergenic |
CATAACATGGATGATGAGGT+TGG | 0.640089 | 4_2:+14767982 | Msa0590920:CDS |
CTGAAAATGATTGTTCCGAT+GGG | 0.641922 | 4_2:+14768733 | Msa0590920:CDS |
CTGAAAATGATTGTTCCGAT+GGG | 0.641922 | 4_2:+14768913 | Msa0590920:CDS |
TCTCTGGGGAGGACATTGGG+TGG | 0.651120 | 4_2:-14768251 | None:intergenic |
GCAGCTGAATCACCACTAGA+GGG | 0.651747 | 4_2:-14768504 | None:intergenic |
AACATGGATGATGAGGTTGG+TGG | 0.652716 | 4_2:+14767985 | Msa0590920:CDS |
TCTCTGGGGAAGACATTGGG+TGG | 0.656973 | 4_2:-14768611 | None:intergenic |
TCTCTTGGGAGGACATTGCG+TGG | 0.662855 | 4_2:-14768971 | None:intergenic |
CAATCAGAAGAGATACTAGA+CGG | 0.664717 | 4_2:+14768648 | Msa0590920:CDS |
CAATCAGAAGAGATACTAGA+CGG | 0.667769 | 4_2:+14768288 | Msa0590920:CDS |
CAATCAGAAGAGATACTAGA+CGG | 0.667769 | 4_2:+14768828 | Msa0590920:CDS |
GAATCTGAAGAGATACTAGA+CGG | 0.671927 | 4_2:+14769008 | Msa0590920:CDS |
AAGTCCTTAATGTATCTCGT+GGG | 0.675628 | 4_2:+14767779 | Msa0590920:CDS |
GTCAACTGGCACAATCTCTG+GGG | 0.687753 | 4_2:-14768265 | None:intergenic |
GTCAACTAGCACAATCTCTG+GGG | 0.706401 | 4_2:-14768625 | None:intergenic |
ATTCTCTCTTCTCTCCACCG+CGG | 0.809631 | 4_2:+14766408 | Msa0590920:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATGTTGAATTTTTTTTTTT+AGG | - | chr4_2:14766518-14766537 | None:intergenic | 10.0% |
!!! | TTTAGTGTAATTTTTTTGTT+TGG | + | chr4_2:14767033-14767052 | Msa0590920:intron | 15.0% |
!!! | TTTTTATTTACATTGATTTG+AGG | + | chr4_2:14767300-14767319 | Msa0590920:intron | 15.0% |
!!! | AGATTTTTGAATTTAAGTTT+TGG | - | chr4_2:14767808-14767827 | None:intergenic | 15.0% |
!! | AGAATGAATTAAATAACAAA+TGG | + | chr4_2:14769180-14769199 | Msa0590920:CDS | 15.0% |
!!! | CTTTTTATGTAAGAAAAAGA+CGG | - | chr4_2:14766286-14766305 | None:intergenic | 20.0% |
!! | TAACCTTAAAGATGAATAAA+AGG | - | chr4_2:14766587-14766606 | None:intergenic | 20.0% |
!! | TTTGTTAGAATTCAAAGATT+TGG | + | chr4_2:14766608-14766627 | Msa0590920:intron | 20.0% |
!! | TTGTTAGAATTCAAAGATTT+GGG | + | chr4_2:14766609-14766628 | Msa0590920:intron | 20.0% |
!!! | AGATTTTGTCTAAATTTTGA+TGG | + | chr4_2:14766898-14766917 | Msa0590920:intron | 20.0% |
!!! | TAATTATGTTGATTGATTGT+TGG | + | chr4_2:14767473-14767492 | Msa0590920:intron | 20.0% |
!! | CATTATATCAAAACTTTCAA+AGG | + | chr4_2:14767742-14767761 | Msa0590920:CDS | 20.0% |
! | GAAGATATAGAAATGATGAA+TGG | - | chr4_2:14766347-14766366 | None:intergenic | 25.0% |
! | GTGAAATTGAAAAGAAATGA+AGG | - | chr4_2:14766469-14766488 | None:intergenic | 25.0% |
! | ATACATGAACAAAAACAAGA+CGG | - | chr4_2:14766547-14766566 | None:intergenic | 25.0% |
! | CTGAACAAAACAAACATTAT+GGG | - | chr4_2:14766880-14766899 | None:intergenic | 25.0% |
! | TCTGAACAAAACAAACATTA+TGG | - | chr4_2:14766881-14766900 | None:intergenic | 25.0% |
!! | TTGTATTTTACTTGCATGTT+TGG | + | chr4_2:14766931-14766950 | Msa0590920:intron | 25.0% |
!!! | TTTCTGAATTGTTTGTTTTG+AGG | + | chr4_2:14767004-14767023 | Msa0590920:intron | 25.0% |
!!! | TTTTGATGGTAGTATTACAT+TGG | + | chr4_2:14767221-14767240 | Msa0590920:intron | 25.0% |
! | AATGTGATAGATTTAGTACT+AGG | + | chr4_2:14767366-14767385 | Msa0590920:intron | 25.0% |
!!! | TTTTTTTTTACTGATTCCAG+TGG | + | chr4_2:14767668-14767687 | Msa0590920:intron | 25.0% |
! | TATATCAAAACTTTCAAAGG+TGG | + | chr4_2:14767745-14767764 | Msa0590920:CDS | 25.0% |
! | ATATCAAAACTTTCAAAGGT+GGG | + | chr4_2:14767746-14767765 | Msa0590920:CDS | 25.0% |
!! | AATTTGCTTGAGTGTTAAAA+TGG | - | chr4_2:14768025-14768044 | None:intergenic | 25.0% |
!! | CAATCAAATTTAACTTCAAC+AGG | - | chr4_2:14768531-14768550 | None:intergenic | 25.0% |
!! | CAATCAAATTTAACTTCAAC+AGG | - | chr4_2:14768531-14768550 | None:intergenic | 25.0% |
!! | CAATCAAATTTAACTTCAAC+AGG | - | chr4_2:14768531-14768550 | None:intergenic | 25.0% |
! | ATAACAATATCCATATCAGA+TGG | - | chr4_2:14769242-14769261 | None:intergenic | 25.0% |
ATGATTTGAATCTTGGTTGT+CGG | - | chr4_2:14766239-14766258 | None:intergenic | 30.0% | |
GCAAATCATGATTTGAATCT+TGG | - | chr4_2:14766246-14766265 | None:intergenic | 30.0% | |
TTTATGTAAGAAAAAGACGG+CGG | - | chr4_2:14766283-14766302 | None:intergenic | 30.0% | |
ATAGAAATGATGAATGGCAA+TGG | - | chr4_2:14766341-14766360 | None:intergenic | 30.0% | |
TACATGAACAAAAACAAGAC+GGG | - | chr4_2:14766546-14766565 | None:intergenic | 30.0% | |
! | GTGCCTTTTATTCATCTTTA+AGG | + | chr4_2:14766581-14766600 | Msa0590920:intron | 30.0% |
TACTGAAGCTATCAAAAACT+AGG | - | chr4_2:14766767-14766786 | None:intergenic | 30.0% | |
!! | TTTTGATAGCTTCAGTAAAG+AGG | + | chr4_2:14766770-14766789 | Msa0590920:intron | 30.0% |
CTGATGATTTGATACCAATT+AGG | + | chr4_2:14766831-14766850 | Msa0590920:intron | 30.0% | |
! | ACCAATTAGGTTTTTGATGT+TGG | + | chr4_2:14766844-14766863 | Msa0590920:intron | 30.0% |
TCCAACATCAAAAACCTAAT+TGG | - | chr4_2:14766848-14766867 | None:intergenic | 30.0% | |
!! | CTTCTGAAGCTATAAAACTA+GGG | - | chr4_2:14767082-14767101 | None:intergenic | 30.0% |
!! | TCTTCTGAAGCTATAAAACT+AGG | - | chr4_2:14767083-14767102 | None:intergenic | 30.0% |
!!! | GAGAGGTTTTGAAAAAACAA+AGG | + | chr4_2:14767101-14767120 | Msa0590920:intron | 30.0% |
AAAACAAAGGATTGTTTGTC+TGG | + | chr4_2:14767114-14767133 | Msa0590920:intron | 30.0% | |
ATCCAATATGAAAACCTCAT+TGG | - | chr4_2:14767158-14767177 | None:intergenic | 30.0% | |
ACAGCAACAAAAAACATCAA+GGG | - | chr4_2:14767187-14767206 | None:intergenic | 30.0% | |
AACAGCAACAAAAAACATCA+AGG | - | chr4_2:14767188-14767207 | None:intergenic | 30.0% | |
! | TCAGATTGTCTGAATTTTGA+TGG | + | chr4_2:14767207-14767226 | Msa0590920:intron | 30.0% |
TGGTACTTTAATTGCTTGTT+TGG | + | chr4_2:14767241-14767260 | Msa0590920:intron | 30.0% | |
TTGATTGTTGGAATTAATGC+AGG | + | chr4_2:14767485-14767504 | Msa0590920:intron | 30.0% | |
AAAAAAAGATGAGTTGCCAT+AGG | + | chr4_2:14767629-14767648 | Msa0590920:intron | 30.0% | |
TACATAGTTAGAAGAACCTA+TGG | - | chr4_2:14767648-14767667 | None:intergenic | 30.0% | |
! | AAGATCATGCATTGATGTAA+TGG | + | chr4_2:14767891-14767910 | Msa0590920:intron | 30.0% |
CTGAAAGTGATTGTTTCAAT+GGG | + | chr4_2:14768373-14768392 | Msa0590920:CDS | 30.0% | |
CTGAAAATGATTGTTTCGAT+GGG | + | chr4_2:14768553-14768572 | Msa0590920:CDS | 30.0% | |
! | TTTTCATATTCCACTACAGA+CGG | + | chr4_2:14769211-14769230 | Msa0590920:CDS | 30.0% |
AGAAGAGAGAATTGGATCTA+GGG | - | chr4_2:14766400-14766419 | None:intergenic | 35.0% | |
AAATGAAGGATTTCTCACCT+TGG | - | chr4_2:14766455-14766474 | None:intergenic | 35.0% | |
!!! | TGCATGTTTGGTGTTTTACT+TGG | + | chr4_2:14766943-14766962 | Msa0590920:intron | 35.0% |
! | GTTTTATAGCTTCAGAAGAG+AGG | + | chr4_2:14767084-14767103 | Msa0590920:intron | 35.0% |
! | TTGATAGTTTGAGACCAATG+AGG | + | chr4_2:14767141-14767160 | Msa0590920:intron | 35.0% |
! | GACCAATGAGGTTTTCATAT+TGG | + | chr4_2:14767153-14767172 | Msa0590920:intron | 35.0% |
! | TGCTTCATTTTGCATTTACC+TGG | + | chr4_2:14767324-14767343 | Msa0590920:intron | 35.0% |
! | TTCATTTTGCATTTACCTGG+TGG | + | chr4_2:14767327-14767346 | Msa0590920:intron | 35.0% |
! | GTTTCTTGTCTTGTTCACAA+TGG | + | chr4_2:14767388-14767407 | Msa0590920:intron | 35.0% |
AGAGACGTAAAATCTTGCTT+TGG | + | chr4_2:14767429-14767448 | Msa0590920:intron | 35.0% | |
! | AAAGTGCTTTGTACATTTGC+TGG | + | chr4_2:14767512-14767531 | Msa0590920:intron | 35.0% |
AAGTGCTTTGTACATTTGCT+GGG | + | chr4_2:14767513-14767532 | Msa0590920:intron | 35.0% | |
!! | AGCAGATTTAGTTCTAGAAC+AGG | + | chr4_2:14767590-14767609 | Msa0590920:intron | 35.0% |
!! | AGATTTAGTTCTAGAACAGG+AGG | + | chr4_2:14767593-14767612 | Msa0590920:intron | 35.0% |
ACATGAGAATTTCAAACCAC+TGG | - | chr4_2:14767687-14767706 | None:intergenic | 35.0% | |
GAAATTCTCATGTCAAACCT+AGG | + | chr4_2:14767694-14767713 | Msa0590920:CDS | 35.0% | |
!! | TTTCAAAGGTGGGTTTGTTA+CGG | + | chr4_2:14767756-14767775 | Msa0590920:CDS | 35.0% |
AAGTCCTTAATGTATCTCGT+GGG | + | chr4_2:14767779-14767798 | Msa0590920:CDS | 35.0% | |
! | TGATGATGATGATGATGCAA+AGG | + | chr4_2:14767864-14767883 | Msa0590920:CDS | 35.0% |
! | ATCATGCATTGATGTAATGG+AGG | + | chr4_2:14767894-14767913 | Msa0590920:intron | 35.0% |
TGAAAACTGAACCTGATGTT+TGG | + | chr4_2:14767926-14767945 | Msa0590920:CDS | 35.0% | |
GAAAACTGAACCTGATGTTT+GGG | + | chr4_2:14767927-14767946 | Msa0590920:CDS | 35.0% | |
TGTTCAGACAATCCATAACA+TGG | + | chr4_2:14767969-14767988 | Msa0590920:CDS | 35.0% | |
AATCCATAACATGGATGATG+AGG | + | chr4_2:14767978-14767997 | Msa0590920:CDS | 35.0% | |
TTAAAGATAGCTGCAAAGCA+AGG | + | chr4_2:14768043-14768062 | Msa0590920:CDS | 35.0% | |
AGAAGATGATCCTGATTTCA+TGG | + | chr4_2:14768161-14768180 | Msa0590920:CDS | 35.0% | |
CAATCAGAAGAGATACTAGA+CGG | + | chr4_2:14768288-14768307 | Msa0590920:CDS | 35.0% | |
CCATTGAAACAATCACTTTC+AGG | - | chr4_2:14768375-14768394 | None:intergenic | 35.0% | |
CCTGAAAGTGATTGTTTCAA+TGG | + | chr4_2:14768372-14768391 | Msa0590920:CDS | 35.0% | |
GTCTTCTTTACTTTCTCTAC+CGG | - | chr4_2:14768412-14768431 | None:intergenic | 35.0% | |
CATCTAGTATCTCTTCTGAT+TGG | - | chr4_2:14768470-14768489 | None:intergenic | 35.0% | |
CAATCAGAAGAGATACTAGA+TGG | + | chr4_2:14768288-14768307 | Msa0590920:CDS | 35.0% | |
! | CCATCGAAACAATCATTTTC+AGG | - | chr4_2:14768555-14768574 | None:intergenic | 35.0% |
CCTGAAAATGATTGTTTCGA+TGG | + | chr4_2:14768552-14768571 | Msa0590920:CDS | 35.0% | |
CAATCAGAAGAGATACTAGA+CGG | + | chr4_2:14768288-14768307 | Msa0590920:CDS | 35.0% | |
CTGAAAATGATTGTTCCGAT+GGG | + | chr4_2:14768733-14768752 | Msa0590920:CDS | 35.0% | |
GTCTTCTTTACTTTCTCTAC+CGG | - | chr4_2:14768412-14768431 | None:intergenic | 35.0% | |
CAATCAGAAGAGATACTAGA+CGG | + | chr4_2:14768288-14768307 | Msa0590920:CDS | 35.0% | |
CTGAAAATGATTGTTCCGAT+GGG | + | chr4_2:14768733-14768752 | Msa0590920:CDS | 35.0% | |
GTCTTCTTTACTTTCTCTAC+TGG | - | chr4_2:14768412-14768431 | None:intergenic | 35.0% | |
GAATCTGAAGAGATACTAGA+CGG | + | chr4_2:14769008-14769027 | Msa0590920:CDS | 35.0% | |
! | ACACAGAAATAACTCTAGAG+TGG | + | chr4_2:14769150-14769169 | Msa0590920:CDS | 35.0% |
!! | CGTTTAGTGCTGGTCTTTAA+GGG | - | chr4_2:14766205-14766224 | None:intergenic | 40.0% |
!! | ACGTTTAGTGCTGGTCTTTA+AGG | - | chr4_2:14766206-14766225 | None:intergenic | 40.0% |
! | GAAGTGTTAACGTTTAGTGC+TGG | - | chr4_2:14766215-14766234 | None:intergenic | 40.0% |
! | CATGATTTGCCGCGTTATAA+CGG | + | chr4_2:14766256-14766275 | Msa0590920:intron | 40.0% |
! | ATGATTTGCCGCGTTATAAC+GGG | + | chr4_2:14766257-14766276 | Msa0590920:intron | 40.0% |
GAGAAGAGAGAATTGGATCT+AGG | - | chr4_2:14766401-14766420 | None:intergenic | 40.0% | |
AGGATTTCTCACCTTGGATA+GGG | - | chr4_2:14766449-14766468 | None:intergenic | 40.0% | |
AAGGATTTCTCACCTTGGAT+AGG | - | chr4_2:14766450-14766469 | None:intergenic | 40.0% | |
GAAGTCCTTAATGTATCTCG+TGG | + | chr4_2:14767778-14767797 | Msa0590920:CDS | 40.0% | |
! | TGCATTGATGTAATGGAGGA+AGG | + | chr4_2:14767898-14767917 | Msa0590920:intron | 40.0% |
CAACCTCATCATCCATGTTA+TGG | - | chr4_2:14767984-14768003 | None:intergenic | 40.0% | |
CATAACATGGATGATGAGGT+TGG | + | chr4_2:14767982-14768001 | Msa0590920:CDS | 40.0% | |
! | ATCTCTTCTGATTGGTCAAC+TGG | - | chr4_2:14768282-14768301 | None:intergenic | 40.0% |
CGTCTAGTATCTCTTCTGAT+TGG | - | chr4_2:14768290-14768309 | None:intergenic | 40.0% | |
GTCTTCTTTACTTTCTCGAC+CGG | - | chr4_2:14768592-14768611 | None:intergenic | 40.0% | |
CGTCTAGTATCTCTTCTGAT+TGG | - | chr4_2:14768290-14768309 | None:intergenic | 40.0% | |
! | CCATCGGAACAATCATTTTC+AGG | - | chr4_2:14768735-14768754 | None:intergenic | 40.0% |
CCTGAAAATGATTGTTCCGA+TGG | + | chr4_2:14768732-14768751 | Msa0590920:CDS | 40.0% | |
CAATCTCTTGGGAAGACATT+GGG | - | chr4_2:14768797-14768816 | None:intergenic | 40.0% | |
CGTCTAGTATCTCTTCTGAT+TGG | - | chr4_2:14768290-14768309 | None:intergenic | 40.0% | |
! | CCATCGGAACAATCATTTTC+AGG | - | chr4_2:14768735-14768754 | None:intergenic | 40.0% |
CCTGAAAATGATTGTTCCGA+TGG | + | chr4_2:14768732-14768751 | Msa0590920:CDS | 40.0% | |
GTCAACTAGCACAATCTCTT+GGG | - | chr4_2:14768988-14769007 | None:intergenic | 40.0% | |
!! | AATGGCGCGGCAATTTGTTT+TGG | - | chr4_2:14766323-14766342 | None:intergenic | 45.0% |
AATGATGAATGGCAATGGCG+CGG | - | chr4_2:14766336-14766355 | None:intergenic | 45.0% | |
ACCTTGGATAGGGTTGGATT+CGG | - | chr4_2:14766439-14766458 | None:intergenic | 45.0% | |
TTTCTCACCTTGGATAGGGT+TGG | - | chr4_2:14766445-14766464 | None:intergenic | 45.0% | |
TTTACCTGGTGGTTGCTTAG+TGG | + | chr4_2:14767338-14767357 | Msa0590920:intron | 45.0% | |
TTTGCTGGGTCAGACACTTA+AGG | + | chr4_2:14767527-14767546 | Msa0590920:intron | 45.0% | |
GATGACTACAACGCTCCATT+CGG | - | chr4_2:14767720-14767739 | None:intergenic | 45.0% | |
TCCTTAATGTATCTCGTGGG+CGG | + | chr4_2:14767782-14767801 | Msa0590920:CDS | 45.0% | |
TCATCACATGCCCAAACATC+AGG | - | chr4_2:14767940-14767959 | None:intergenic | 45.0% | |
! | GTTTGGGCATGTGATGATGA+TGG | + | chr4_2:14767943-14767962 | Msa0590920:CDS | 45.0% |
AACATGGATGATGAGGTTGG+TGG | + | chr4_2:14767985-14768004 | Msa0590920:CDS | 45.0% | |
AGGAAGAGAAAACGCTCACA+AGG | + | chr4_2:14768063-14768082 | Msa0590920:CDS | 45.0% | |
! | CTTTTCCATGTGGTCTTCTG+GGG | - | chr4_2:14768133-14768152 | None:intergenic | 45.0% |
! | GCTTTTCCATGTGGTCTTCT+GGG | - | chr4_2:14768134-14768153 | None:intergenic | 45.0% |
! | TGCTTTTCCATGTGGTCTTC+TGG | - | chr4_2:14768135-14768154 | None:intergenic | 45.0% |
!!! | CTGTTTGCTGCTTTTCCATG+TGG | - | chr4_2:14768143-14768162 | None:intergenic | 45.0% |
CTGAGAGTCTCCATGAAATC+AGG | - | chr4_2:14768174-14768193 | None:intergenic | 45.0% | |
! | GACCAAGAAGAAGTGCATGA+AGG | + | chr4_2:14768227-14768246 | Msa0590920:CDS | 45.0% |
GTCCTTCATGCACTTCTTCT+TGG | - | chr4_2:14768232-14768251 | None:intergenic | 45.0% | |
AATGGGCAAGATGACTGTTC+CGG | + | chr4_2:14768390-14768409 | Msa0590920:CDS | 45.0% | |
! | CAATCTCTGGGGAAGACATT+GGG | - | chr4_2:14768617-14768636 | None:intergenic | 45.0% |
! | ACAATCTCTGGGGAAGACAT+TGG | - | chr4_2:14768618-14768637 | None:intergenic | 45.0% |
GTCAACTAGCACAATCTCTG+GGG | - | chr4_2:14768628-14768647 | None:intergenic | 45.0% | |
GGTCAACTAGCACAATCTCT+GGG | - | chr4_2:14768629-14768648 | None:intergenic | 45.0% | |
TGGTCAACTAGCACAATCTC+TGG | - | chr4_2:14768630-14768649 | None:intergenic | 45.0% | |
GCAATCTCTTGGGAAGACAT+TGG | - | chr4_2:14768798-14768817 | None:intergenic | 45.0% | |
GTCAACTAGCGCAATCTCTT+GGG | - | chr4_2:14768808-14768827 | None:intergenic | 45.0% | |
TCTCTACTGGAACAGTCATC+TGG | - | chr4_2:14768939-14768958 | None:intergenic | 45.0% | |
AACTAGCACAATCTCTTGGG+AGG | - | chr4_2:14768985-14769004 | None:intergenic | 45.0% | |
CGTCAACTAGCACAATCTCT+TGG | - | chr4_2:14768989-14769008 | None:intergenic | 45.0% | |
AATGAGCCAGATGACTGTTC+TGG | + | chr4_2:14769110-14769129 | Msa0590920:CDS | 45.0% | |
TCTCTACCAGAACAGTCATC+TGG | - | chr4_2:14769119-14769138 | None:intergenic | 45.0% | |
CGGTGGAGAGAAGAGAGAAT+TGG | - | chr4_2:14766408-14766427 | None:intergenic | 50.0% | |
ATTCTCTCTTCTCTCCACCG+CGG | + | chr4_2:14766408-14766427 | Msa0590920:CDS | 50.0% | |
TTGGATAGGGTTGGATTCGG+TGG | - | chr4_2:14766436-14766455 | None:intergenic | 50.0% | |
ACCGAATCCAACCCTATCCA+AGG | + | chr4_2:14766435-14766454 | Msa0590920:CDS | 50.0% | |
CATGTCAAACCTAGGCCGAA+TGG | + | chr4_2:14767702-14767721 | Msa0590920:CDS | 50.0% | |
! | ATGTGGTCTTCTGGGGATGA+TGG | - | chr4_2:14768126-14768145 | None:intergenic | 50.0% |
ATCATCCCCAGAAGACCACA+TGG | + | chr4_2:14768125-14768144 | Msa0590920:CDS | 50.0% | |
! | CAATCTCTGGGGAGGACATT+GGG | - | chr4_2:14768257-14768276 | None:intergenic | 50.0% |
! | ACAATCTCTGGGGAGGACAT+TGG | - | chr4_2:14768258-14768277 | None:intergenic | 50.0% |
GTCAACTGGCACAATCTCTG+GGG | - | chr4_2:14768268-14768287 | None:intergenic | 50.0% | |
GGTCAACTGGCACAATCTCT+GGG | - | chr4_2:14768269-14768288 | None:intergenic | 50.0% | |
TGGTCAACTGGCACAATCTC+TGG | - | chr4_2:14768270-14768289 | None:intergenic | 50.0% | |
CAAGAGTTCTCACCCTCTAG+TGG | + | chr4_2:14768312-14768331 | Msa0590920:CDS | 50.0% | |
CCAGCTGAATCTCCACTAGA+GGG | - | chr4_2:14768327-14768346 | None:intergenic | 50.0% | |
CAGCCTCTTGGGAAGACATT+GGG | - | chr4_2:14768437-14768456 | None:intergenic | 50.0% | |
ACAGCCTCTTGGGAAGACAT+TGG | - | chr4_2:14768438-14768457 | None:intergenic | 50.0% | |
GTGAACTAGCACAGCCTCTT+GGG | - | chr4_2:14768448-14768467 | None:intergenic | 50.0% | |
CAAGAGTTCTCACCCTCTAG+TGG | + | chr4_2:14768312-14768331 | Msa0590920:CDS | 50.0% | |
GCAGCTGAATCACCACTAGA+GGG | - | chr4_2:14768507-14768526 | None:intergenic | 50.0% | |
TCTCTACCGGAACAGTCATC+TGG | - | chr4_2:14768399-14768418 | None:intergenic | 50.0% | |
TCTCTTGGGAAGACATTGGG+TGG | - | chr4_2:14768794-14768813 | None:intergenic | 50.0% | |
GGTCAACTAGCGCAATCTCT+TGG | - | chr4_2:14768809-14768828 | None:intergenic | 50.0% | |
GCAGCTGAATCTCCACTAGT+GGG | - | chr4_2:14768867-14768886 | None:intergenic | 50.0% | |
AGCAGCTGAATCTCCACTAG+TGG | - | chr4_2:14768868-14768887 | None:intergenic | 50.0% | |
GACGGTGAAGCCATCTGATA+TGG | + | chr4_2:14769229-14769248 | Msa0590920:CDS | 50.0% | |
!!! | CGGCAATTTGTTTTGGCGGG+AGG | - | chr4_2:14766316-14766335 | None:intergenic | 55.0% |
!!! | GCGCGGCAATTTGTTTTGGC+GGG | - | chr4_2:14766319-14766338 | None:intergenic | 55.0% |
!!! | GGCGCGGCAATTTGTTTTGG+CGG | - | chr4_2:14766320-14766339 | None:intergenic | 55.0% |
AGCACCACTAAGCAACCACC+AGG | - | chr4_2:14767345-14767364 | None:intergenic | 55.0% | |
TACAACGCTCCATTCGGCCT+AGG | - | chr4_2:14767714-14767733 | None:intergenic | 55.0% | |
GCCGCCCACGAGATACATTA+AGG | - | chr4_2:14767786-14767805 | None:intergenic | 55.0% | |
! | AACTGGCACAATCTCTGGGG+AGG | - | chr4_2:14768265-14768284 | None:intergenic | 55.0% |
CCCTCTAGTGGAGATTCAGC+TGG | + | chr4_2:14768324-14768343 | Msa0590920:CDS | 55.0% | |
GCCAGCTGAATCTCCACTAG+AGG | - | chr4_2:14768328-14768347 | None:intergenic | 55.0% | |
CCTCTTGGGAAGACATTGGG+TGG | - | chr4_2:14768434-14768453 | None:intergenic | 55.0% | |
CCACCCAATGTCTTCCCAAG+AGG | + | chr4_2:14768431-14768450 | Msa0590920:CDS | 55.0% | |
GGTGAACTAGCACAGCCTCT+TGG | - | chr4_2:14768449-14768468 | None:intergenic | 55.0% | |
CGCAGCTGAATCACCACTAG+AGG | - | chr4_2:14768508-14768527 | None:intergenic | 55.0% | |
GATGGGCCAGATGACTGTTC+CGG | + | chr4_2:14768570-14768589 | Msa0590920:CDS | 55.0% | |
TCTCGACCGGAACAGTCATC+TGG | - | chr4_2:14768579-14768598 | None:intergenic | 55.0% | |
! | TCTCTGGGGAAGACATTGGG+TGG | - | chr4_2:14768614-14768633 | None:intergenic | 55.0% |
GCAGCTGAATCTCCACCAGA+GGG | - | chr4_2:14768687-14768706 | None:intergenic | 55.0% | |
AGCAGCTGAATCTCCACCAG+AGG | - | chr4_2:14768688-14768707 | None:intergenic | 55.0% | |
GGAACAGTCATCTGGCCCAT+CGG | - | chr4_2:14768571-14768590 | None:intergenic | 55.0% | |
GATGGGCCAGATGACTGTTC+CGG | + | chr4_2:14768570-14768589 | Msa0590920:CDS | 55.0% | |
CAAGAGTTCTCGCCCACTAG+TGG | + | chr4_2:14768852-14768871 | Msa0590920:CDS | 55.0% | |
GGAACAGTCATCTGGCCCAT+CGG | - | chr4_2:14768571-14768590 | None:intergenic | 55.0% | |
TCTCTTGGGAGGACATTGCG+TGG | - | chr4_2:14768974-14768993 | None:intergenic | 55.0% | |
ATGAGTTCCCACCGTCTAGC+AGG | + | chr4_2:14769033-14769052 | Msa0590920:CDS | 55.0% | |
TGAGTTCCCACCGTCTAGCA+GGG | + | chr4_2:14769034-14769053 | Msa0590920:CDS | 55.0% | |
CTGAATCCCTGCTAGACGGT+GGG | - | chr4_2:14769043-14769062 | None:intergenic | 55.0% | |
GCAGCTGAATCCCTGCTAGA+CGG | - | chr4_2:14769047-14769066 | None:intergenic | 55.0% | |
GATGGCTTCACCGTCTGTAG+TGG | - | chr4_2:14769224-14769243 | None:intergenic | 55.0% | |
! | TCTCTGGGGAGGACATTGGG+TGG | - | chr4_2:14768254-14768273 | None:intergenic | 60.0% |
CACCAGAGGGCGAGAACTCT+TGG | - | chr4_2:14768674-14768693 | None:intergenic | 60.0% | |
CAAGAGTTCTCGCCCTCTGG+TGG | + | chr4_2:14768672-14768691 | Msa0590920:CDS | 60.0% | |
GCTGAATCCCTGCTAGACGG+TGG | - | chr4_2:14769044-14769063 | None:intergenic | 60.0% | |
GACGGCGGCCCGTTATAACG+CGG | - | chr4_2:14766268-14766287 | None:intergenic | 65.0% | |
!! | GGTTGGATTCGGTGGTGCCG+CGG | - | chr4_2:14766428-14766447 | None:intergenic | 65.0% |
GGCCAAGAGTTCTCGCCCTC+TGG | + | chr4_2:14768669-14768688 | Msa0590920:CDS | 65.0% | |
!! | TGGATTCGGTGGTGCCGCGG+TGG | - | chr4_2:14766425-14766444 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_2 | gene | 14766186 | 14769262 | 14766186 | ID=Msa0590920;Name=Msa0590920 |
chr4_2 | mRNA | 14766186 | 14769262 | 14766186 | ID=Msa0590920-mRNA-1;Parent=Msa0590920;Name=Msa0590920-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.25|0|0.8|0|0.2|5|0|556 |
chr4_2 | exon | 14766186 | 14766191 | 14766186 | ID=Msa0590920-mRNA-1:exon:4216;Parent=Msa0590920-mRNA-1 |
chr4_2 | exon | 14766369 | 14766456 | 14766369 | ID=Msa0590920-mRNA-1:exon:4217;Parent=Msa0590920-mRNA-1 |
chr4_2 | exon | 14767507 | 14767514 | 14767507 | ID=Msa0590920-mRNA-1:exon:4218;Parent=Msa0590920-mRNA-1 |
chr4_2 | exon | 14767688 | 14767906 | 14767688 | ID=Msa0590920-mRNA-1:exon:4219;Parent=Msa0590920-mRNA-1 |
chr4_2 | exon | 14767916 | 14769262 | 14767916 | ID=Msa0590920-mRNA-1:exon:4220;Parent=Msa0590920-mRNA-1 |
chr4_2 | CDS | 14766186 | 14766191 | 14766186 | ID=Msa0590920-mRNA-1:cds;Parent=Msa0590920-mRNA-1 |
chr4_2 | CDS | 14766369 | 14766456 | 14766369 | ID=Msa0590920-mRNA-1:cds;Parent=Msa0590920-mRNA-1 |
chr4_2 | CDS | 14767507 | 14767514 | 14767507 | ID=Msa0590920-mRNA-1:cds;Parent=Msa0590920-mRNA-1 |
chr4_2 | CDS | 14767688 | 14767906 | 14767688 | ID=Msa0590920-mRNA-1:cds;Parent=Msa0590920-mRNA-1 |
chr4_2 | CDS | 14767916 | 14769262 | 14767916 | ID=Msa0590920-mRNA-1:cds;Parent=Msa0590920-mRNA-1 |
Gene Sequence |
Protein sequence |