Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0597080 | Msa1438250 | 0.800927 | 1.145203e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 15 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTTATCCTTTGCAACTT+TGG | 0.318129 | 4_2:-28996542 | Msa0597080:intron |
| GCTTTAGCATTAAGATCAAT+AGG | 0.353013 | 4_2:+28995404 | None:intergenic |
| TTGAAGTCAAATACTCTTGT+AGG | 0.360824 | 4_2:-28995374 | Msa0597080:intron |
| ATGTTCCTAATTTCGTTCTC+TGG | 0.371692 | 4_2:+28996602 | None:intergenic |
| TTATAGCAGTGAAGGATTCA+TGG | 0.378015 | 4_2:-28996162 | Msa0597080:intron |
| AATGGCAAATTGTACACATT+TGG | 0.405887 | 4_2:-28996576 | Msa0597080:CDS |
| ATGAAACCGCTCAGTGAAAC+GGG | 0.448897 | 4_2:+28996647 | None:intergenic |
| GGTTAGATTATTCTGTCAAA+AGG | 0.465370 | 4_2:-28996671 | Msa0597080:five_prime_UTR |
| AATGAAACCGCTCAGTGAAA+CGG | 0.469408 | 4_2:+28996646 | None:intergenic |
| TCTTAATAATCTTATCGTAA+TGG | 0.503136 | 4_2:+28992459 | None:intergenic |
| GGTTTCATTATGTTGTGAAG+AGG | 0.582738 | 4_2:-28996632 | Msa0597080:five_prime_UTR |
| CGAAATTAGGAACATGGCAA+TGG | 0.593914 | 4_2:-28996594 | Msa0597080:exon |
| CTGACATACCAAAGTTGCAA+AGG | 0.601097 | 4_2:+28996534 | None:intergenic |
| AAAGGACCCGTTTCACTGAG+CGG | 0.637225 | 4_2:-28996653 | Msa0597080:five_prime_UTR |
| AGAGAACGAAATTAGGAACA+TGG | 0.664750 | 4_2:-28996600 | Msa0597080:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATTTAAAAAAAAAA+AGG | - | chr4_2:28995378-28995397 | Msa0597080:CDS | 0.0% |
| !! | ATTAAATAAATAGTTAAACA+AGG | + | chr4_2:28993323-28993342 | None:intergenic | 10.0% |
| !!! | ATTTTAATTTTTTTCCATTT+TGG | - | chr4_2:28993712-28993731 | Msa0597080:intron | 10.0% |
| !!! | ATTCATTTTTTTATTTTTGT+TGG | - | chr4_2:28994024-28994043 | Msa0597080:intron | 10.0% |
| !!! | TTCATTTTTTTATTTTTGTT+GGG | - | chr4_2:28994025-28994044 | Msa0597080:intron | 10.0% |
| !! | ATGTTTATCAAAATATAATT+GGG | - | chr4_2:28995276-28995295 | Msa0597080:intron | 10.0% |
| !!! | TTATTTTAGTACTAAATTTA+TGG | - | chr4_2:28995341-28995360 | Msa0597080:intron | 10.0% |
| !! | ATATTTATGAAAATAAATAG+AGG | + | chr4_2:28996158-28996177 | None:intergenic | 10.0% |
| !! | GTTTATAAAAGAAAAATAAA+GGG | + | chr4_2:28996299-28996318 | None:intergenic | 10.0% |
| !! | TGTTTATAAAAGAAAAATAA+AGG | + | chr4_2:28996300-28996319 | None:intergenic | 10.0% |
| !! | AGAAAAGGAAAAAAAAATAT+TGG | + | chr4_2:28992692-28992711 | None:intergenic | 15.0% |
| !!! | GTTTATTTTTAATGTATGAA+AGG | + | chr4_2:28992799-28992818 | None:intergenic | 15.0% |
| !!! | TGCTATTTTTTTTATTGAAA+AGG | - | chr4_2:28992957-28992976 | Msa0597080:intron | 15.0% |
| !!! | GCTATTTTTTTTATTGAAAA+GGG | - | chr4_2:28992958-28992977 | Msa0597080:intron | 15.0% |
| !! | TGCTATAAAAAAAAAAAACT+CGG | + | chr4_2:28993004-28993023 | None:intergenic | 15.0% |
| !! | AAAAAAAAACATTTCATAGA+AGG | + | chr4_2:28993186-28993205 | None:intergenic | 15.0% |
| !!! | CTATGAAATGTTTTTTTTTA+AGG | - | chr4_2:28993187-28993206 | Msa0597080:intron | 15.0% |
| !!! | AAATTAATGTTTTTTTGTGT+TGG | - | chr4_2:28993345-28993364 | Msa0597080:intron | 15.0% |
| !!! | TATTTTTACCAAAATTATTC+AGG | - | chr4_2:28994152-28994171 | Msa0597080:intron | 15.0% |
| !! | AAAAATGTTACATTATAGTT+AGG | + | chr4_2:28994260-28994279 | None:intergenic | 15.0% |
| !!! | CTTTAATATTGTTGTTATTT+AGG | - | chr4_2:28994783-28994802 | Msa0597080:intron | 15.0% |
| !! | TTCATATCATATAAAGAAAA+TGG | + | chr4_2:28994898-28994917 | None:intergenic | 15.0% |
| !! | GATGTTTATCAAAATATAAT+TGG | - | chr4_2:28995275-28995294 | Msa0597080:intron | 15.0% |
| !! | ACTAAATTTATGGAATATTA+TGG | - | chr4_2:28995351-28995370 | Msa0597080:intron | 15.0% |
| !! | AAAAAAAAAATTTCACCTTA+AGG | + | chr4_2:28995931-28995950 | None:intergenic | 15.0% |
| !! | TCTTATACAATCTTTCTAAT+GGG | + | chr4_2:28992826-28992845 | None:intergenic | 20.0% |
| !! | TTCTTATACAATCTTTCTAA+TGG | + | chr4_2:28992827-28992846 | None:intergenic | 20.0% |
| !! | ATAAGAAAATAGTGATGATA+AGG | - | chr4_2:28992840-28992859 | Msa0597080:intron | 20.0% |
| !!! | TTTTTTTTTTATAGCAGTGA+AGG | - | chr4_2:28993008-28993027 | Msa0597080:intron | 20.0% |
| !! | AATAGTTAAACAAGGATTAA+TGG | + | chr4_2:28993315-28993334 | None:intergenic | 20.0% |
| !! | ATACAATTGAAAACAACTTA+TGG | + | chr4_2:28993573-28993592 | None:intergenic | 20.0% |
| !!! | AATTCTACTTACTAGTTTTA+TGG | - | chr4_2:28993841-28993860 | Msa0597080:intron | 20.0% |
| !! | CAAATCAAAGTAAGTTAATA+AGG | + | chr4_2:28994201-28994220 | None:intergenic | 20.0% |
| !! | CTTATTAACTTACTTTGATT+TGG | - | chr4_2:28994199-28994218 | Msa0597080:intron | 20.0% |
| !! | TTATATTAGCAGTTAGAAAA+GGG | + | chr4_2:28994512-28994531 | None:intergenic | 20.0% |
| !!! | TAACTGCTAATATAAGTTTT+TGG | - | chr4_2:28994517-28994536 | Msa0597080:intron | 20.0% |
| !! | ATAGAGAGATATAGTTATTT+AGG | - | chr4_2:28994865-28994884 | Msa0597080:intron | 20.0% |
| !! | TAGAGAGATATAGTTATTTA+GGG | - | chr4_2:28994866-28994885 | Msa0597080:intron | 20.0% |
| !!! | TCATGATATTTTTTTTTCGT+AGG | - | chr4_2:28994980-28994999 | Msa0597080:intron | 20.0% |
| !!! | AAAAAAAAGGTTTTTAGAGA+CGG | - | chr4_2:28995391-28995410 | Msa0597080:CDS | 20.0% |
| !! | AATACACTACTAGAAAAATT+GGG | + | chr4_2:28995762-28995781 | None:intergenic | 20.0% |
| !! | TAATACACTACTAGAAAAAT+TGG | + | chr4_2:28995763-28995782 | None:intergenic | 20.0% |
| !!! | TTTTTTTGTCTTAGATGAAA+TGG | - | chr4_2:28995947-28995966 | Msa0597080:intron | 20.0% |
| !! | TCTTAATAATCTTAACGTAA+TGG | + | chr4_2:28996108-28996127 | None:intergenic | 20.0% |
| !! | TTGTAAACTAAAAACATCTA+TGG | - | chr4_2:28996341-28996360 | Msa0597080:intron | 20.0% |
| !! | TGTAAACTAAAAACATCTAT+GGG | - | chr4_2:28996342-28996361 | Msa0597080:intron | 20.0% |
| ! | TACGTACTATTCAAAAGAAA+AGG | + | chr4_2:28992707-28992726 | None:intergenic | 25.0% |
| ! | TAAGGAACACATAGATATAA+AGG | - | chr4_2:28992858-28992877 | Msa0597080:intron | 25.0% |
| ! | AAGGAACACATAGATATAAA+GGG | - | chr4_2:28992859-28992878 | Msa0597080:intron | 25.0% |
| !! | AGGTTTCTTGATAATCATAA+AGG | - | chr4_2:28993099-28993118 | Msa0597080:intron | 25.0% |
| !!! | AGTTTTGTTGTGATAATGAT+TGG | - | chr4_2:28993124-28993143 | Msa0597080:intron | 25.0% |
| !!! | GTTTTGTTGTGATAATGATT+GGG | - | chr4_2:28993125-28993144 | Msa0597080:intron | 25.0% |
| ! | ACATTTCATAGAAGGATATA+TGG | + | chr4_2:28993178-28993197 | None:intergenic | 25.0% |
| !!! | ATGTTTTTTTGTGTTGGTTT+TGG | - | chr4_2:28993351-28993370 | Msa0597080:intron | 25.0% |
| !!! | TTTTGGTTTCAGTTAAGATT+GGG | - | chr4_2:28993368-28993387 | Msa0597080:intron | 25.0% |
| ! | TCATACTTGAAAATCTGATA+TGG | - | chr4_2:28993659-28993678 | Msa0597080:intron | 25.0% |
| ! | TACAAGTTTCATAACCAAAA+TGG | + | chr4_2:28993729-28993748 | None:intergenic | 25.0% |
| ! | ATGAAACTTGTATTGTATAC+AGG | - | chr4_2:28993737-28993756 | Msa0597080:intron | 25.0% |
| !! | ATGTAGTATAATGTTGTTTG+TGG | - | chr4_2:28993874-28993893 | Msa0597080:intron | 25.0% |
| !! | GTGCAGTTTAGATTTTTAAT+TGG | - | chr4_2:28994106-28994125 | Msa0597080:intron | 25.0% |
| ! | ATCCAAGTTTCAATTCTATA+AGG | + | chr4_2:28994304-28994323 | None:intergenic | 25.0% |
| !! | AACTCTCAAGTTCAAAATTT+TGG | - | chr4_2:28994475-28994494 | Msa0597080:intron | 25.0% |
| ! | CTTATATTAGCAGTTAGAAA+AGG | + | chr4_2:28994513-28994532 | None:intergenic | 25.0% |
| ! | ATTTAATGTGGCAAAAATTG+TGG | - | chr4_2:28994610-28994629 | Msa0597080:intron | 25.0% |
| ! | CATTCTCCTTGTATTTATAT+TGG | - | chr4_2:28994690-28994709 | Msa0597080:intron | 25.0% |
| ! | TCTTCACCAATATAAATACA+AGG | + | chr4_2:28994699-28994718 | None:intergenic | 25.0% |
| ! | GTATTTATATTGGTGAAGAT+TGG | - | chr4_2:28994700-28994719 | Msa0597080:intron | 25.0% |
| !!! | ATTTAGGTTGAAAGTTGAAA+TGG | - | chr4_2:28994799-28994818 | Msa0597080:intron | 25.0% |
| ! | TTGAAAGTTGAAATGGAAAA+TGG | - | chr4_2:28994806-28994825 | Msa0597080:intron | 25.0% |
| ! | GAAACAATTGTTACAAATAG+TGG | - | chr4_2:28994831-28994850 | Msa0597080:intron | 25.0% |
| ! | AGAGAGATATAGTTATTTAG+GGG | - | chr4_2:28994867-28994886 | Msa0597080:intron | 25.0% |
| !!! | TGAAGTTGTGTATTTTGAAA+AGG | + | chr4_2:28994963-28994982 | None:intergenic | 25.0% |
| ! | TTAAAAAGAGCTTCAATAGT+AGG | - | chr4_2:28995039-28995058 | Msa0597080:intron | 25.0% |
| ! | TAAAAAGAGCTTCAATAGTA+GGG | - | chr4_2:28995040-28995059 | Msa0597080:intron | 25.0% |
| ! | GGAATTTCAATAAATAGAGA+CGG | - | chr4_2:28995439-28995458 | Msa0597080:intron | 25.0% |
| ! | GGAAATATATTTATCTGAGA+CGG | - | chr4_2:28995494-28995513 | Msa0597080:intron | 25.0% |
| ! | CTCTTCTTTCATTTAAACTT+TGG | - | chr4_2:28995548-28995567 | Msa0597080:intron | 25.0% |
| !!! | TTACTTGTACTTTTTCTTTG+TGG | - | chr4_2:28995780-28995799 | Msa0597080:intron | 25.0% |
| ! | AAAAAAATTTCACCTTAAGG+TGG | + | chr4_2:28995928-28995947 | None:intergenic | 25.0% |
| ! | AATAAAGGGATAAAAGTTGA+AGG | + | chr4_2:28996285-28996304 | None:intergenic | 25.0% |
| !! | TAATCTAACCGCTTAGTTTT+TGG | + | chr4_2:28992497-28992516 | None:intergenic | 30.0% |
| GGTTAGATTATTCTGTCAAA+AGG | - | chr4_2:28992507-28992526 | Msa0597080:intron | 30.0% | |
| AAAAACCAGAGAACGAAATT+AGG | - | chr4_2:28992571-28992590 | Msa0597080:intron | 30.0% | |
| AATGGCAAATTGTACACATT+TGG | - | chr4_2:28992602-28992621 | Msa0597080:intron | 30.0% | |
| CAATTTATCCTTTGCAACTT+TGG | - | chr4_2:28992636-28992655 | Msa0597080:intron | 30.0% | |
| ! | TTGAAAGTGTGAAATGGATT+CGG | + | chr4_2:28992935-28992954 | None:intergenic | 30.0% |
| ! | AGCAAATTGAAAGTGTGAAA+TGG | + | chr4_2:28992941-28992960 | None:intergenic | 30.0% |
| AACACACATCAAGTTTATAG+TGG | + | chr4_2:28993238-28993257 | None:intergenic | 30.0% | |
| ACTATAAACTTGATGTGTGT+TGG | - | chr4_2:28993237-28993256 | Msa0597080:intron | 30.0% | |
| TCATACCAGATTTCTTCATA+AGG | + | chr4_2:28993282-28993301 | None:intergenic | 30.0% | |
| !!! | GTTTTGGTTTCAGTTAAGAT+TGG | - | chr4_2:28993367-28993386 | Msa0597080:intron | 30.0% |
| !!! | AGTTGTTTTTTGTGTCATCA+TGG | - | chr4_2:28993507-28993526 | Msa0597080:intron | 30.0% |
| GAGAGTTTATGGAAATAAGT+TGG | - | chr4_2:28993529-28993548 | Msa0597080:intron | 30.0% | |
| GCTTTAGCATTAAGATCAAT+AGG | + | chr4_2:28993777-28993796 | None:intergenic | 30.0% | |
| TTGAAGTCAAATACTCTTGT+AGG | - | chr4_2:28993804-28993823 | Msa0597080:intron | 30.0% | |
| AGACTACTAGAAAAGTAAAG+AGG | - | chr4_2:28993907-28993926 | Msa0597080:intron | 30.0% | |
| TAATTGGAAATTGAAACTCG+TGG | - | chr4_2:28994122-28994141 | Msa0597080:intron | 30.0% | |
| CAATCATCAAATCAAACACA+TGG | + | chr4_2:28994235-28994254 | None:intergenic | 30.0% | |
| TGCCTTATAGAATTGAAACT+TGG | - | chr4_2:28994299-28994318 | Msa0597080:intron | 30.0% | |
| ! | ATTGAAACTTGGATTAGAGA+TGG | - | chr4_2:28994310-28994329 | Msa0597080:intron | 30.0% |
| TTAACATGAGACAAATCAAG+AGG | + | chr4_2:28994417-28994436 | None:intergenic | 30.0% | |
| ! | TTTTGAACTTGAGAGTTTAG+AGG | + | chr4_2:28994472-28994491 | None:intergenic | 30.0% |
| GACTGTTATGACTCTTAAAA+TGG | - | chr4_2:28994539-28994558 | Msa0597080:intron | 30.0% | |
| GTAAGCAACATAAGGATTTA+TGG | + | chr4_2:28994576-28994595 | None:intergenic | 30.0% | |
| GAGTAATAGTAAGCAACATA+AGG | + | chr4_2:28994584-28994603 | None:intergenic | 30.0% | |
| ! | TGTTGCTTACTATTACTCTA+AGG | - | chr4_2:28994586-28994605 | Msa0597080:intron | 30.0% |
| GTTGCTTACTATTACTCTAA+GGG | - | chr4_2:28994587-28994606 | Msa0597080:intron | 30.0% | |
| ! | TTACTCTAAGGGATTTAATG+TGG | - | chr4_2:28994598-28994617 | Msa0597080:intron | 30.0% |
| TCACATCACATAAAGCAAAT+AGG | + | chr4_2:28994754-28994773 | None:intergenic | 30.0% | |
| ! | GAAGCTTCATATTGTTACTT+AGG | - | chr4_2:28994922-28994941 | Msa0597080:intron | 30.0% |
| AAAAAGAGCTTCAATAGTAG+GGG | - | chr4_2:28995041-28995060 | Msa0597080:intron | 30.0% | |
| ATTAAAAGTTGCTACTATGG+AGG | - | chr4_2:28995119-28995138 | Msa0597080:intron | 30.0% | |
| TTATTGAAATTCCGTCTCTA+CGG | + | chr4_2:28995432-28995451 | None:intergenic | 30.0% | |
| ! | AATATATTTATCTGAGACGG+TGG | - | chr4_2:28995497-28995516 | Msa0597080:intron | 30.0% |
| TTTCATTTAAACTTTGGCGA+CGG | - | chr4_2:28995554-28995573 | Msa0597080:intron | 30.0% | |
| CGGATTATATAAATTGGTGA+CGG | - | chr4_2:28995574-28995593 | Msa0597080:intron | 30.0% | |
| ATTTAGATTTCCGTCTCTAA+AGG | - | chr4_2:28995624-28995643 | Msa0597080:intron | 30.0% | |
| AGAAAAATTGGGAATAGAGA+CGG | + | chr4_2:28995751-28995770 | None:intergenic | 30.0% | |
| !! | ACTTTTTCTTTGTGGTAAAG+TGG | - | chr4_2:28995788-28995807 | Msa0597080:intron | 30.0% |
| CTACATATCCATAGACTAAA+GGG | + | chr4_2:28995892-28995911 | None:intergenic | 30.0% | |
| TCTACATATCCATAGACTAA+AGG | + | chr4_2:28995893-28995912 | None:intergenic | 30.0% | |
| GAAAATAGAAGTTCACCTTA+AGG | + | chr4_2:28995986-28996005 | None:intergenic | 30.0% | |
| ATGTATTCTTAGTAGTCTGA+TGG | + | chr4_2:28996012-28996031 | None:intergenic | 30.0% | |
| TACTAAGAATACATCGACAT+TGG | - | chr4_2:28996018-28996037 | Msa0597080:intron | 30.0% | |
| TTCGTAATAGAAGAGACATT+TGG | - | chr4_2:28996388-28996407 | Msa0597080:intron | 30.0% | |
| CGATAGAACCAAAAACTAAG+CGG | - | chr4_2:28992486-28992505 | Msa0597080:CDS | 35.0% | |
| GGTTTCATTATGTTGTGAAG+AGG | - | chr4_2:28992546-28992565 | Msa0597080:intron | 35.0% | |
| ATGTTCCTAATTTCGTTCTC+TGG | + | chr4_2:28992579-28992598 | None:intergenic | 35.0% | |
| AGAGAACGAAATTAGGAACA+TGG | - | chr4_2:28992578-28992597 | Msa0597080:intron | 35.0% | |
| ! | TGAAAGTGTGAAATGGATTC+GGG | + | chr4_2:28992934-28992953 | None:intergenic | 35.0% |
| TTATAGCAGTGAAGGATTCA+TGG | - | chr4_2:28993016-28993035 | Msa0597080:intron | 35.0% | |
| CAAGTCCTTATGAAGAAATC+TGG | - | chr4_2:28993274-28993293 | Msa0597080:intron | 35.0% | |
| ! | CTTCTATATTGCAGCTTTGA+AGG | - | chr4_2:28993634-28993653 | Msa0597080:intron | 35.0% |
| ! | CTCAGTCACCTGAATAATTT+TGG | + | chr4_2:28994163-28994182 | None:intergenic | 35.0% |
| AGGCAAAATCTGTTAGCATA+AGG | + | chr4_2:28994284-28994303 | None:intergenic | 35.0% | |
| ATTGGTAGGGAATTGAAACT+TGG | - | chr4_2:28994338-28994357 | Msa0597080:intron | 35.0% | |
| GAAGTGAGAAGAATGAGTAT+TGG | + | chr4_2:28994391-28994410 | None:intergenic | 35.0% | |
| GATTTGTCTCATGTTAAAGC+TGG | - | chr4_2:28994420-28994439 | Msa0597080:intron | 35.0% | |
| !! | AAAATTGTGGCTCTAGTTGT+TGG | - | chr4_2:28994623-28994642 | Msa0597080:intron | 35.0% |
| AAAAGAGCTTCAATAGTAGG+GGG | - | chr4_2:28995042-28995061 | Msa0597080:intron | 35.0% | |
| ! | GTAGCAACTTTTAATGCCAA+AGG | + | chr4_2:28995114-28995133 | None:intergenic | 35.0% |
| GGCATTAAAAGTTGCTACTA+TGG | - | chr4_2:28995116-28995135 | Msa0597080:intron | 35.0% | |
| TTTGTGACAGAGTTTAGAGA+CGG | - | chr4_2:28995473-28995492 | Msa0597080:intron | 35.0% | |
| !! | TGGCGACGGATTATATAAAT+TGG | - | chr4_2:28995568-28995587 | Msa0597080:intron | 35.0% |
| TATTTCGTCTCTATCAGAGA+CGG | - | chr4_2:28995600-28995619 | Msa0597080:intron | 35.0% | |
| !!! | GATTTCTCCTGTTTTAGAGA+CGG | - | chr4_2:28995718-28995737 | Msa0597080:intron | 35.0% |
| GAAAAATTGGGAATAGAGAC+GGG | + | chr4_2:28995750-28995769 | None:intergenic | 35.0% | |
| ! | TGCATTTTCCCTTTAGTCTA+TGG | - | chr4_2:28995881-28995900 | Msa0597080:intron | 35.0% |
| TATGTGAATGATCCACCTTA+AGG | - | chr4_2:28995913-28995932 | Msa0597080:intron | 35.0% | |
| GGTAATCCACTTAAACCTTA+AGG | - | chr4_2:28995968-28995987 | Msa0597080:intron | 35.0% | |
| AGTTCACCTTAAGGTTTAAG+TGG | + | chr4_2:28995977-28995996 | None:intergenic | 35.0% | |
| ATTCTTAGTAGTCTGATGGA+TGG | + | chr4_2:28996008-28996027 | None:intergenic | 35.0% | |
| AAGTTGAAGGAAAGGAACTA+AGG | + | chr4_2:28996272-28996291 | None:intergenic | 35.0% | |
| AGGGATAAAAGTTGAAGGAA+AGG | + | chr4_2:28996280-28996299 | None:intergenic | 35.0% | |
| TGATTAAAGTGTGACGTTCA+CGG | - | chr4_2:28996448-28996467 | Msa0597080:intron | 35.0% | |
| !! | CTAGAGAATTTGCTAGTGTT+AGG | - | chr4_2:28996528-28996547 | Msa0597080:intron | 35.0% |
| ! | GCAACAATGCATTTGTTGAT+CGG | - | chr4_2:28996560-28996579 | Msa0597080:CDS | 35.0% |
| AATGAAACCGCTCAGTGAAA+CGG | + | chr4_2:28992535-28992554 | None:intergenic | 40.0% | |
| CGAAATTAGGAACATGGCAA+TGG | - | chr4_2:28992584-28992603 | Msa0597080:intron | 40.0% | |
| CTGACATACCAAAGTTGCAA+AGG | + | chr4_2:28992647-28992666 | None:intergenic | 40.0% | |
| GAACTTTCTATTCGATGCGA+CGG | - | chr4_2:28992906-28992925 | Msa0597080:intron | 40.0% | |
| TGGTTTCAGTTAAGATTGGG+AGG | - | chr4_2:28993371-28993390 | Msa0597080:intron | 40.0% | |
| !!! | GCAAAGATCTCTGCTTTTTC+AGG | - | chr4_2:28993432-28993451 | Msa0597080:intron | 40.0% |
| GTGTCATCATGGAGAGTTTA+TGG | - | chr4_2:28993518-28993537 | Msa0597080:intron | 40.0% | |
| TGACTGAGTTGTGTGACTTA+GGG | - | chr4_2:28994175-28994194 | Msa0597080:intron | 40.0% | |
| ! | CTTGGATTAGAGAACTTGAG+AGG | - | chr4_2:28994356-28994375 | Msa0597080:intron | 40.0% |
| CATGAGACAAATCAAGAGGA+AGG | + | chr4_2:28994413-28994432 | None:intergenic | 40.0% | |
| TTGTCTCATGTTAAAGCTGG+TGG | - | chr4_2:28994423-28994442 | Msa0597080:intron | 40.0% | |
| !! | CATGTTAAAGCTGGTGGATT+TGG | - | chr4_2:28994429-28994448 | Msa0597080:intron | 40.0% |
| AAAGAGCTTCAATAGTAGGG+GGG | - | chr4_2:28995043-28995062 | Msa0597080:intron | 40.0% | |
| AGATAGATGTATGCAGCCTT+TGG | - | chr4_2:28995095-28995114 | Msa0597080:intron | 40.0% | |
| !! | GTCTCTAAAGCCTTTAGAGA+CGG | + | chr4_2:28995637-28995656 | None:intergenic | 40.0% |
| AGAGACGACAAAAACAACGA+CGG | - | chr4_2:28995651-28995670 | Msa0597080:intron | 40.0% | |
| GTCTCTAAACTTGTCTGAGA+CGG | + | chr4_2:28995697-28995716 | None:intergenic | 40.0% | |
| !! | GCAAAATCCGTCTCTAAAAC+AGG | + | chr4_2:28995728-28995747 | None:intergenic | 40.0% |
| ACTGTAGTATGTAGAGACTG+AGG | - | chr4_2:28995844-28995863 | Msa0597080:intron | 40.0% | |
| CTAAAGGGAAAATGCATCTC+AGG | + | chr4_2:28995877-28995896 | None:intergenic | 40.0% | |
| ! | ATAAGTTTGTGCTTGCTAGG+AGG | - | chr4_2:28996413-28996432 | Msa0597080:intron | 40.0% |
| ! | TAAGTTTGTGCTTGCTAGGA+GGG | - | chr4_2:28996414-28996433 | Msa0597080:intron | 40.0% |
| ACAATACATCGCTCCTATAC+AGG | + | chr4_2:28996501-28996520 | None:intergenic | 40.0% | |
| TGCTAGTGTTAGGTGTAAAG+TGG | - | chr4_2:28996538-28996557 | Msa0597080:intron | 40.0% | |
| ATGAAACCGCTCAGTGAAAC+GGG | + | chr4_2:28992534-28992553 | None:intergenic | 45.0% | |
| AGGCATTTGTGGTTGCAAAC+TGG | + | chr4_2:28993069-28993088 | None:intergenic | 45.0% | |
| AGCAGAGATCTTTGCTTGTC+AGG | + | chr4_2:28993427-28993446 | None:intergenic | 45.0% | |
| GTGACTGAGTTGTGTGACTT+AGG | - | chr4_2:28994174-28994193 | Msa0597080:intron | 45.0% | |
| GGATTAGAGATGGCTGTGAT+TGG | - | chr4_2:28994320-28994339 | Msa0597080:intron | 45.0% | |
| TAGAGATGGCTGTGATTGGT+AGG | - | chr4_2:28994324-28994343 | Msa0597080:intron | 45.0% | |
| AGAGATGGCTGTGATTGGTA+GGG | - | chr4_2:28994325-28994344 | Msa0597080:intron | 45.0% | |
| TTCAATAGTAGGGGGGTCTT+TGG | - | chr4_2:28995050-28995069 | Msa0597080:intron | 45.0% | |
| AAATTCCGTCTCTACGGAGA+CGG | + | chr4_2:28995426-28995445 | None:intergenic | 45.0% | |
| AGAGATTAATCCGTCGCAGT+TGG | + | chr4_2:28995532-28995551 | None:intergenic | 45.0% | |
| CTTCTATTACGAAGACCACC+AGG | + | chr4_2:28996381-28996400 | None:intergenic | 45.0% | |
| GCGATAAGTTTGTGCTTGCT+AGG | - | chr4_2:28996410-28996429 | Msa0597080:intron | 45.0% | |
| !! | AAAAATAAATTACATATTTA+TGG | - | chr4_2:28996043-28996062 | Msa0597080:intron | 5.0% |
| AAAGGACCCGTTTCACTGAG+CGG | - | chr4_2:28992525-28992544 | Msa0597080:intron | 50.0% | |
| ACCACAAATGCCTTGCAGAG+TGG | - | chr4_2:28993076-28993095 | Msa0597080:intron | 50.0% | |
| ! | TCCACTCTGCAAGGCATTTG+TGG | + | chr4_2:28993080-28993099 | None:intergenic | 50.0% |
| ACAAATGCCTTGCAGAGTGG+AGG | - | chr4_2:28993079-28993098 | Msa0597080:intron | 50.0% | |
| CAAGAAACCTCCACTCTGCA+AGG | + | chr4_2:28993089-28993108 | None:intergenic | 50.0% | |
| TCAGTTAAGATTGGGAGGCC+TGG | - | chr4_2:28993376-28993395 | Msa0597080:intron | 50.0% | |
| CAGTTAAGATTGGGAGGCCT+GGG | - | chr4_2:28993377-28993396 | Msa0597080:intron | 50.0% | |
| TAATCCGTCGCAGTTGGAGA+CGG | + | chr4_2:28995526-28995545 | None:intergenic | 50.0% | |
| ACGGAATCAGAGACGGAACT+AGG | + | chr4_2:28995678-28995697 | None:intergenic | 50.0% | |
| ! | GTCTGAGACGGAATCAGAGA+CGG | + | chr4_2:28995685-28995704 | None:intergenic | 50.0% |
| TGCTTAGTCACGCGATACCC+AGG | + | chr4_2:28993397-28993416 | None:intergenic | 55.0% | |
| GTGATCCGTCTCCGTAGAGA+CGG | - | chr4_2:28995418-28995437 | Msa0597080:CDS | 55.0% | |
| GTTTCCGTCTCCAACTGCGA+CGG | - | chr4_2:28995519-28995538 | Msa0597080:intron | 55.0% | |
| AGCCAGAGCTGCACCTGTAT+AGG | - | chr4_2:28996485-28996504 | Msa0597080:intron | 55.0% | |
| CTCCTATACAGGTGCAGCTC+TGG | + | chr4_2:28996490-28996509 | None:intergenic | 55.0% | |
| ATGGGATACGCTTCGCGACC+TGG | - | chr4_2:28996360-28996379 | Msa0597080:intron | 60.0% | |
| GGATACGCTTCGCGACCTGG+TGG | - | chr4_2:28996363-28996382 | Msa0597080:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 28992470 | 28996730 | 28992470 | ID=Msa0597080;Name=Msa0597080 |
| chr4_2 | mRNA | 28992470 | 28996730 | 28992470 | ID=Msa0597080-mRNA-1;Parent=Msa0597080;Name=Msa0597080-mRNA-1;_AED=0.30;_eAED=0.32;_QI=127|0|0.16|0.33|0|0.33|6|0|63 |
| chr4_2 | exon | 28992470 | 28992510 | 28992470 | ID=Msa0597080-mRNA-1:exon:7412;Parent=Msa0597080-mRNA-1 |
| chr4_2 | exon | 28992552 | 28992558 | 28992552 | ID=Msa0597080-mRNA-1:exon:7411;Parent=Msa0597080-mRNA-1 |
| chr4_2 | exon | 28993232 | 28993239 | 28993232 | ID=Msa0597080-mRNA-1:exon:7410;Parent=Msa0597080-mRNA-1 |
| chr4_2 | exon | 28995375 | 28995441 | 28995375 | ID=Msa0597080-mRNA-1:exon:7409;Parent=Msa0597080-mRNA-1 |
| chr4_2 | exon | 28996163 | 28996170 | 28996163 | ID=Msa0597080-mRNA-1:exon:7408;Parent=Msa0597080-mRNA-1 |
| chr4_2 | exon | 28996543 | 28996730 | 28996543 | ID=Msa0597080-mRNA-1:exon:7407;Parent=Msa0597080-mRNA-1 |
| chr4_2 | five_prime_UTR | 28996604 | 28996730 | 28996604 | ID=Msa0597080-mRNA-1:five_prime_utr;Parent=Msa0597080-mRNA-1 |
| chr4_2 | CDS | 28996543 | 28996603 | 28996543 | ID=Msa0597080-mRNA-1:cds;Parent=Msa0597080-mRNA-1 |
| chr4_2 | CDS | 28996163 | 28996170 | 28996163 | ID=Msa0597080-mRNA-1:cds;Parent=Msa0597080-mRNA-1 |
| chr4_2 | CDS | 28995375 | 28995441 | 28995375 | ID=Msa0597080-mRNA-1:cds;Parent=Msa0597080-mRNA-1 |
| chr4_2 | CDS | 28993232 | 28993239 | 28993232 | ID=Msa0597080-mRNA-1:cds;Parent=Msa0597080-mRNA-1 |
| chr4_2 | CDS | 28992552 | 28992558 | 28992552 | ID=Msa0597080-mRNA-1:cds;Parent=Msa0597080-mRNA-1 |
| chr4_2 | CDS | 28992470 | 28992510 | 28992470 | ID=Msa0597080-mRNA-1:cds;Parent=Msa0597080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
