Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600670 | KEH18885.1 | 70.195 | 359 | 16 | 4 | 1 | 358 | 1 | 269 | 3.56e-170 | 484 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0283370 | Msa0600670 | 0.944437 | 1.953507e-103 | -8.615850e-47 |
| Msa0600670 | Msa1243290 | 0.962139 | 1.598357e-120 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600670 | MtrunA17_Chr8g0349191 | 95.902 | 122 | 5 | 0 | 237 | 358 | 1 | 122 | 1.06e-83 | 249 |
| Msa0600670 | MtrunA17_Chr2g0287671 | 38.158 | 380 | 189 | 9 | 2 | 348 | 73 | 439 | 1.48e-69 | 224 |
| Msa0600670 | MtrunA17_Chr4g0002051 | 32.517 | 286 | 178 | 9 | 62 | 342 | 44 | 319 | 1.93e-41 | 147 |
| Msa0600670 | MtrunA17_Chr8g0349211 | 60.360 | 111 | 36 | 2 | 169 | 279 | 22 | 124 | 3.07e-41 | 140 |
| Msa0600670 | MtrunA17_Chr8g0349201 | 85.915 | 71 | 10 | 0 | 51 | 121 | 1 | 71 | 7.05e-37 | 127 |
| Msa0600670 | MtrunA17_Chr8g0361701 | 42.675 | 157 | 77 | 3 | 142 | 293 | 94 | 242 | 1.11e-35 | 130 |
| Msa0600670 | MtrunA17_Chr6g0463841 | 33.333 | 234 | 121 | 4 | 8 | 237 | 40 | 242 | 3.98e-33 | 124 |
| Msa0600670 | MtrunA17_Chr8g0381471 | 31.285 | 179 | 118 | 5 | 165 | 342 | 1 | 175 | 8.68e-24 | 96.7 |
| Msa0600670 | MtrunA17_Chr7g0225291 | 25.379 | 264 | 184 | 8 | 86 | 344 | 289 | 544 | 1.25e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 93 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGCTTGAATGGTTTAATT+TGG | 0.218298 | 4_2:+42474016 | Msa0600670:three_prime_UTR |
| CATGGTTGAGTTTGTTGTTT+TGG | 0.240866 | 4_2:-42470972 | None:intergenic |
| CCTCTGGATTTGTGGGCTAT+TGG | 0.246927 | 4_2:-42471014 | None:intergenic |
| GCAAGTTTAACCCTTGTATC+TGG | 0.280442 | 4_2:-42473707 | None:intergenic |
| TCAAATTCAGTTGGATTCAT+TGG | 0.280879 | 4_2:-42472107 | None:intergenic |
| GGTTAAACTTGCCATTGATT+TGG | 0.319721 | 4_2:+42473718 | Msa0600670:CDS |
| GGGTTCAACAACTGAGAAAT+TGG | 0.328342 | 4_2:-42473282 | None:intergenic |
| GAATGATATGGAAGCATATA+TGG | 0.336513 | 4_2:+42472287 | Msa0600670:CDS |
| TTTATTTGAATGGTTTGATT+TGG | 0.337660 | 4_2:+42473975 | Msa0600670:three_prime_UTR |
| TCAGCAACGACTCCGGAGTC+TGG | 0.341582 | 4_2:+42473412 | Msa0600670:intron |
| GCTGAATTCCTCTGGATTTG+TGG | 0.345701 | 4_2:-42471022 | None:intergenic |
| CACATGACTTTGCTTTAATT+CGG | 0.348068 | 4_2:+42473859 | Msa0600670:exon |
| CTTACACAGGGAGGAAATAT+TGG | 0.362542 | 4_2:+42472417 | Msa0600670:intron |
| GCCTGGTCAACCGGAGAATC+AGG | 0.372239 | 4_2:-42472493 | None:intergenic |
| CAAATTCAGTTGGATTCATT+GGG | 0.374935 | 4_2:-42472106 | None:intergenic |
| ACAAAGTGAACTTGGGGTAG+TGG | 0.382447 | 4_2:+42472441 | Msa0600670:CDS |
| ACATGTGTTTAAGAATGATA+TGG | 0.393051 | 4_2:+42472275 | Msa0600670:CDS |
| CTGAATTCCTCTGGATTTGT+GGG | 0.396110 | 4_2:-42471021 | None:intergenic |
| CCTAGACAGATTTGCTTGAA+TGG | 0.397775 | 4_2:+42474006 | Msa0600670:three_prime_UTR |
| GACTCTGATGCCTGATTCTC+CGG | 0.406997 | 4_2:+42472483 | Msa0600670:CDS |
| CCGGAGTCTGGGTTGCTGCT+TGG | 0.410182 | 4_2:+42473424 | Msa0600670:CDS |
| TCTCTGACTTAGGAGTCCTC+TGG | 0.412298 | 4_2:-42473303 | None:intergenic |
| TAACTAACCGCCTGGTCAAC+CGG | 0.417884 | 4_2:-42472502 | None:intergenic |
| TTCATTCCTATGAATGATCA+AGG | 0.423889 | 4_2:+42472997 | Msa0600670:CDS |
| TGAAAGAAAGCTTTATGTGT+TGG | 0.428918 | 4_2:+42473053 | Msa0600670:CDS |
| GTATGTACCGCAAAATTTGC+TGG | 0.444858 | 4_2:-42472673 | None:intergenic |
| GCCTGATTCTCCGGTTGACC+AGG | 0.448861 | 4_2:+42472492 | Msa0600670:CDS |
| TCTTTCTTCTCTTGATCTGC+CGG | 0.453713 | 4_2:-42471061 | None:intergenic |
| GGACTCCTAAGTCAGAGATA+TGG | 0.462189 | 4_2:+42473308 | Msa0600670:CDS |
| GAAAGCAACATGCACTTGAC+TGG | 0.467030 | 4_2:+42472782 | Msa0600670:intron |
| ATGAATCCAACTGAATTTGA+AGG | 0.468397 | 4_2:+42472110 | Msa0600670:CDS |
| ATATTGGCACAAAGTGAACT+TGG | 0.472334 | 4_2:+42472433 | Msa0600670:CDS |
| GTGTTCCGCCACGTCTTTGT+TGG | 0.473430 | 4_2:-42472633 | None:intergenic |
| TGCAAACCTTGATCATTCAT+AGG | 0.473856 | 4_2:-42473003 | None:intergenic |
| AAAAGGATTCAACTCTCAAA+TGG | 0.474106 | 4_2:+42473816 | Msa0600670:CDS |
| ACTATCCATATCTCTGACTT+AGG | 0.474749 | 4_2:-42473313 | None:intergenic |
| CAGCAACGACTCCGGAGTCT+GGG | 0.476067 | 4_2:+42473413 | Msa0600670:intron |
| ATCAGGTTTATCCAGATACA+AGG | 0.477282 | 4_2:+42473696 | Msa0600670:intron |
| TAAACACATGTGGGAATGGA+TGG | 0.479896 | 4_2:-42472263 | None:intergenic |
| GTAATCCCTTCAAATTCAGT+TGG | 0.480197 | 4_2:-42472116 | None:intergenic |
| ACAAGCCAGCTGAATTCCTC+TGG | 0.483892 | 4_2:-42471030 | None:intergenic |
| AGCAGCTTTCTTTCAGCGCA+TGG | 0.484578 | 4_2:-42473084 | None:intergenic |
| TTCTTAAACACATGTGGGAA+TGG | 0.488980 | 4_2:-42472267 | None:intergenic |
| AACTTGGGGTAGTGGGATAC+CGG | 0.492893 | 4_2:+42472449 | Msa0600670:CDS |
| AGGTTTGCATTGGTATCTCA+TGG | 0.496668 | 4_2:+42473017 | Msa0600670:CDS |
| CTCTGACTTAGGAGTCCTCT+GGG | 0.503684 | 4_2:-42473302 | None:intergenic |
| CCTCATACCTTCTTCAGCCA+TGG | 0.505119 | 4_2:-42470990 | None:intergenic |
| ATCAGGCATCAGAGTCTTGA+GGG | 0.506055 | 4_2:-42472476 | None:intergenic |
| TGCCTTCATGGGAAGAATAG+AGG | 0.508829 | 4_2:+42472843 | Msa0600670:CDS |
| CCATTCAAGCAAATCTGTCT+AGG | 0.521531 | 4_2:-42474006 | None:intergenic |
| TTTAATTCGGCACTTCAGCT+TGG | 0.523245 | 4_2:+42473872 | Msa0600670:three_prime_UTR |
| TATTGGCACAAAGTGAACTT+GGG | 0.524279 | 4_2:+42472434 | Msa0600670:CDS |
| AATGCTATGAACCAAATCAA+TGG | 0.528802 | 4_2:-42473729 | None:intergenic |
| GTGGCGGAACACCATCTTTG+TGG | 0.529806 | 4_2:+42472644 | Msa0600670:CDS |
| CAAAGTGAACTTGGGGTAGT+GGG | 0.535627 | 4_2:+42472442 | Msa0600670:CDS |
| TGACTGGATGCACAATCCTA+AGG | 0.541647 | 4_2:+42472798 | Msa0600670:CDS |
| AACTCAACCATGGCTGAAGA+AGG | 0.542450 | 4_2:+42470983 | Msa0600670:exon |
| GGGAATGGATGGATTGATAG+AGG | 0.545794 | 4_2:-42472252 | None:intergenic |
| TACAGAAGGTGTTACTATCC+CGG | 0.546037 | 4_2:+42472136 | Msa0600670:CDS |
| TGAATGATCAAGGTTTGCAT+TGG | 0.547472 | 4_2:+42473007 | Msa0600670:CDS |
| TGAATCCAACTGAATTTGAA+GGG | 0.550677 | 4_2:+42472111 | Msa0600670:CDS |
| TCTTCTAACTTCTAATTCAG+AGG | 0.551832 | 4_2:+42470948 | Msa0600670:five_prime_UTR |
| ACATAGAGATGTCTTGAGAA+TGG | 0.553969 | 4_2:+42473110 | Msa0600670:CDS |
| GAGAATTCATATTATGATTG+CGG | 0.554135 | 4_2:+42473233 | Msa0600670:CDS |
| GCACAATCCTAAGGCTGACA+TGG | 0.554145 | 4_2:+42472807 | Msa0600670:CDS |
| GTCCTCTATTCTTCCCATGA+AGG | 0.555171 | 4_2:-42472845 | None:intergenic |
| TTCAACTCTCAAATGGTGGA+TGG | 0.555810 | 4_2:+42473823 | Msa0600670:CDS |
| CCATGGCTGAAGAAGGTATG+AGG | 0.574654 | 4_2:+42470990 | Msa0600670:exon |
| CATGGGTAGTTGAGTTGAGA+GGG | 0.574915 | 4_2:+42470874 | None:intergenic |
| CAAATCCAGAGGAATTCAGC+TGG | 0.576581 | 4_2:+42471025 | Msa0600670:CDS |
| ATATCATTCTTAAACACATG+TGG | 0.580191 | 4_2:-42472273 | None:intergenic |
| CCAAGCAGCAACCCAGACTC+CGG | 0.581533 | 4_2:-42473424 | None:intergenic |
| GCTGGTAGGTACCACAAAGA+TGG | 0.590418 | 4_2:-42472655 | None:intergenic |
| AGGATTCAACTCTCAAATGG+TGG | 0.591880 | 4_2:+42473819 | Msa0600670:CDS |
| ACATGGGTAGTTGAGTTGAG+AGG | 0.593075 | 4_2:+42470873 | None:intergenic |
| AATTAAGTGTTCTCTCACCC+AGG | 0.596498 | 4_2:+42471095 | Msa0600670:CDS |
| ATTCAGTTGGATTCATTGGG+TGG | 0.598270 | 4_2:-42472103 | None:intergenic |
| GAATTTGAAGGGATTACAGA+AGG | 0.606692 | 4_2:+42472122 | Msa0600670:CDS |
| AAGAATAGAGGACGTTCGAA+AGG | 0.606721 | 4_2:+42472855 | Msa0600670:CDS |
| AATCAGGCATCAGAGTCTTG+AGG | 0.608787 | 4_2:-42472477 | None:intergenic |
| TATCATTCTTAAACACATGT+GGG | 0.611400 | 4_2:-42472272 | None:intergenic |
| GCTGATGATGAAAATCGTCA+TGG | 0.630451 | 4_2:+42472327 | Msa0600670:CDS |
| GTACCGCAAAATTTGCTGGT+AGG | 0.630547 | 4_2:-42472669 | None:intergenic |
| ATTGGCACAAAGTGAACTTG+GGG | 0.632379 | 4_2:+42472435 | Msa0600670:CDS |
| TTCTCAGTTGTTGAACCCAG+AGG | 0.634854 | 4_2:+42473287 | Msa0600670:CDS |
| TGATTCTCCGGTTGACCAGG+CGG | 0.634995 | 4_2:+42472495 | Msa0600670:CDS |
| TCAGGTTTATCCAGATACAA+GGG | 0.637230 | 4_2:+42473697 | Msa0600670:intron |
| CAAAACAACAAACTCAACCA+TGG | 0.638804 | 4_2:+42470973 | Msa0600670:exon |
| CTGATGATGAAAATCGTCAT+GGG | 0.673028 | 4_2:+42472328 | Msa0600670:CDS |
| CCAATAGCCCACAAATCCAG+AGG | 0.684114 | 4_2:+42471014 | Msa0600670:CDS |
| CTAACACACCAACAAAGACG+TGG | 0.699939 | 4_2:+42472625 | Msa0600670:CDS |
| ACACACCAACAAAGACGTGG+CGG | 0.720987 | 4_2:+42472628 | Msa0600670:CDS |
| AGAAGGTGTTACTATCCCGG+AGG | 0.774712 | 4_2:+42472139 | Msa0600670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTGCATTTATAACAA+AGG | + | chr4_2:42471123-42471142 | Msa0600670:intron | 15.0% |
| !!! | TTTTCTTTTCTTTTAATTCT+AGG | + | chr4_2:42471460-42471479 | Msa0600670:intron | 15.0% |
| !! | AAAATGGATGATATATAAAA+AGG | - | chr4_2:42471606-42471625 | None:intergenic | 15.0% |
| !!! | ATTTGATCATATTTCTAAAA+TGG | - | chr4_2:42471622-42471641 | None:intergenic | 15.0% |
| !! | AATGATATAAAAAACAATAC+AGG | + | chr4_2:42471920-42471939 | Msa0600670:intron | 15.0% |
| !! | TGTAAGAAACTAAAATAAAA+TGG | - | chr4_2:42472925-42472944 | None:intergenic | 15.0% |
| !!! | CACAATAAATTATATTTTTC+TGG | + | chr4_2:42473540-42473559 | Msa0600670:intron | 15.0% |
| !! | AATGCAATAAAAAATTACCT+GGG | - | chr4_2:42471115-42471134 | None:intergenic | 20.0% |
| !! | AAATGCAATAAAAAATTACC+TGG | - | chr4_2:42471116-42471135 | None:intergenic | 20.0% |
| !!! | GTGATCTTTTTAAAAAAGTT+TGG | + | chr4_2:42471390-42471409 | Msa0600670:intron | 20.0% |
| !! | CTACTTTAATAAGTAGAATA+TGG | - | chr4_2:42471494-42471513 | None:intergenic | 20.0% |
| !! | TGATATATAAAAAGGATAGA+TGG | - | chr4_2:42471598-42471617 | None:intergenic | 20.0% |
| !! | AATATGATCAAATTTAATGC+TGG | + | chr4_2:42471629-42471648 | Msa0600670:intron | 20.0% |
| !! | ATATAAAAAACAATACAGGT+TGG | + | chr4_2:42471924-42471943 | Msa0600670:intron | 20.0% |
| !!! | ATATTTTCTTTTGAACAAGT+AGG | + | chr4_2:42471953-42471972 | Msa0600670:intron | 20.0% |
| !!! | TATTTTCTTTTGAACAAGTA+GGG | + | chr4_2:42471954-42471973 | Msa0600670:intron | 20.0% |
| !!! | TAATTTTTCATTCTCTAAGT+TGG | - | chr4_2:42472028-42472047 | None:intergenic | 20.0% |
| !! | TGATTAAAATTATAGTCAAG+TGG | - | chr4_2:42472174-42472193 | None:intergenic | 20.0% |
| !!! | TACTATACAGTCAATATTTT+TGG | + | chr4_2:42473196-42473215 | Msa0600670:intron | 20.0% |
| !!! | ATTTTTGGAAGAAATGTTTA+TGG | + | chr4_2:42473211-42473230 | Msa0600670:CDS | 20.0% |
| !! | AGACAGAAAAAATATTCATA+AGG | - | chr4_2:42473499-42473518 | None:intergenic | 20.0% |
| !!! | TTAAGGTTTATTAGTTTTTG+TGG | + | chr4_2:42473572-42473591 | Msa0600670:intron | 20.0% |
| !!! | TGTGGTTAACTTTTTTTATT+AGG | + | chr4_2:42473590-42473609 | Msa0600670:intron | 20.0% |
| !!! | TTTTTTTATTAGGAAACACT+TGG | + | chr4_2:42473600-42473619 | Msa0600670:intron | 20.0% |
| !!! | TAAAATTTTCTAGACTGAAA+TGG | - | chr4_2:42473925-42473944 | None:intergenic | 20.0% |
| !!! | TCTAGACAATTTTATTTGAA+TGG | + | chr4_2:42473965-42473984 | Msa0600670:three_prime_UTR | 20.0% |
| !! | TTTATTTGAATGGTTTGATT+TGG | + | chr4_2:42473975-42473994 | Msa0600670:three_prime_UTR | 20.0% |
| ! | AATCAATGAATTGAAGGAAT+GGG | - | chr4_2:42471191-42471210 | None:intergenic | 25.0% |
| !!! | TAATTCTCCCAATTTGTTTT+CGG | + | chr4_2:42471318-42471337 | Msa0600670:intron | 25.0% |
| ! | AAAAGAAAAGAATGTGACAT+TGG | - | chr4_2:42471449-42471468 | None:intergenic | 25.0% |
| ! | ATTGAATAGGTATCATAAGA+AGG | + | chr4_2:42471694-42471713 | Msa0600670:intron | 25.0% |
| ! | TATCATTCCAATTATCTTGA+AGG | + | chr4_2:42472063-42472082 | Msa0600670:intron | 25.0% |
| ! | ATCATTCCAATTATCTTGAA+GGG | + | chr4_2:42472064-42472083 | Msa0600670:intron | 25.0% |
| ! | TATCATTCTTAAACACATGT+GGG | - | chr4_2:42472275-42472294 | None:intergenic | 25.0% |
| ! | ATATCATTCTTAAACACATG+TGG | - | chr4_2:42472276-42472295 | None:intergenic | 25.0% |
| ! | ACATGTGTTTAAGAATGATA+TGG | + | chr4_2:42472275-42472294 | Msa0600670:CDS | 25.0% |
| ! | GAGAATTCATATTATGATTG+CGG | + | chr4_2:42473233-42473252 | Msa0600670:CDS | 25.0% |
| !!! | TGATTTGGTTATATAAGTTG+TGG | + | chr4_2:42473629-42473648 | Msa0600670:intron | 25.0% |
| ! | TTTGCTTGAATGGTTTAATT+TGG | + | chr4_2:42474016-42474035 | Msa0600670:three_prime_UTR | 25.0% |
| ! | TCTCTTCTTTTGTTGCTAAT+AGG | - | chr4_2:42470907-42470926 | None:intergenic | 30.0% |
| TCTTCTAACTTCTAATTCAG+AGG | + | chr4_2:42470948-42470967 | Msa0600670:five_prime_UTR | 30.0% | |
| GAATCAATGAATTGAAGGAA+TGG | - | chr4_2:42471192-42471211 | None:intergenic | 30.0% | |
| TTTGGGAATCAATGAATTGA+AGG | - | chr4_2:42471197-42471216 | None:intergenic | 30.0% | |
| AACATAGAGATGCCAAATTA+CGG | - | chr4_2:42471231-42471250 | None:intergenic | 30.0% | |
| GAAAACAAATTGGGAGAATT+AGG | - | chr4_2:42471319-42471338 | None:intergenic | 30.0% | |
| TACTGAACCGAAAACAAATT+GGG | - | chr4_2:42471328-42471347 | None:intergenic | 30.0% | |
| TTACTGAACCGAAAACAAAT+TGG | - | chr4_2:42471329-42471348 | None:intergenic | 30.0% | |
| !! | TTATCACATATTTTTGCAGC+TGG | + | chr4_2:42471514-42471533 | Msa0600670:intron | 30.0% |
| TATAAAAAGGATAGATGGTG+AGG | - | chr4_2:42471593-42471612 | None:intergenic | 30.0% | |
| ATGATCAAATTTAATGCTGG+TGG | + | chr4_2:42471632-42471651 | Msa0600670:intron | 30.0% | |
| TGATCAAATTTAATGCTGGT+GGG | + | chr4_2:42471633-42471652 | Msa0600670:intron | 30.0% | |
| ! | AAATAGGGAGTATATTGCTA+AGG | + | chr4_2:42471662-42471681 | Msa0600670:intron | 30.0% |
| AAGGTTGCAGAATATTGAAT+AGG | + | chr4_2:42471681-42471700 | Msa0600670:intron | 30.0% | |
| !! | ATTTTAAAGAAACCTGACAC+AGG | - | chr4_2:42471745-42471764 | None:intergenic | 30.0% |
| GTTCATTTGCTTGTTTGTAT+AGG | + | chr4_2:42471784-42471803 | Msa0600670:intron | 30.0% | |
| ! | TTTGGTGGTATTTAGTATGA+AGG | + | chr4_2:42471810-42471829 | Msa0600670:intron | 30.0% |
| CAAATTCAGTTGGATTCATT+GGG | - | chr4_2:42472109-42472128 | None:intergenic | 30.0% | |
| TCAAATTCAGTTGGATTCAT+TGG | - | chr4_2:42472110-42472129 | None:intergenic | 30.0% | |
| ATGAATCCAACTGAATTTGA+AGG | + | chr4_2:42472110-42472129 | Msa0600670:CDS | 30.0% | |
| TGAATCCAACTGAATTTGAA+GGG | + | chr4_2:42472111-42472130 | Msa0600670:CDS | 30.0% | |
| ! | GAATGATATGGAAGCATATA+TGG | + | chr4_2:42472287-42472306 | Msa0600670:CDS | 30.0% |
| TTTAACAGAGCACGTATAAT+TGG | + | chr4_2:42472559-42472578 | Msa0600670:intron | 30.0% | |
| !!! | TTTTTTCAGAATGCCTTCAT+GGG | + | chr4_2:42472832-42472851 | Msa0600670:CDS | 30.0% |
| TTCATTCCTATGAATGATCA+AGG | + | chr4_2:42472997-42473016 | Msa0600670:CDS | 30.0% | |
| ! | TGAAAGAAAGCTTTATGTGT+TGG | + | chr4_2:42473053-42473072 | Msa0600670:CDS | 30.0% |
| GTATCTGTTAGAAAAGAGAA+GGG | - | chr4_2:42473164-42473183 | None:intergenic | 30.0% | |
| AGTATCTGTTAGAAAAGAGA+AGG | - | chr4_2:42473165-42473184 | None:intergenic | 30.0% | |
| AATGCTATGAACCAAATCAA+TGG | - | chr4_2:42473732-42473751 | None:intergenic | 30.0% | |
| GAAGAATGTGCAAGAAAAAA+AGG | + | chr4_2:42473799-42473818 | Msa0600670:CDS | 30.0% | |
| AAAAGGATTCAACTCTCAAA+TGG | + | chr4_2:42473816-42473835 | Msa0600670:CDS | 30.0% | |
| CACATGACTTTGCTTTAATT+CGG | + | chr4_2:42473859-42473878 | Msa0600670:exon | 30.0% | |
| !!! | CATGGTTGAGTTTGTTGTTT+TGG | - | chr4_2:42470975-42470994 | None:intergenic | 35.0% |
| CAAAACAACAAACTCAACCA+TGG | + | chr4_2:42470973-42470992 | Msa0600670:exon | 35.0% | |
| ! | CATAACATCCATTGATTGTG+TGG | + | chr4_2:42471162-42471181 | Msa0600670:intron | 35.0% |
| ACATAGAGATGCCAAATTAC+GGG | - | chr4_2:42471230-42471249 | None:intergenic | 35.0% | |
| GCTTGTTTGTATAGGAAGTT+TGG | + | chr4_2:42471792-42471811 | Msa0600670:intron | 35.0% | |
| TGTTTGTATAGGAAGTTTGG+TGG | + | chr4_2:42471795-42471814 | Msa0600670:intron | 35.0% | |
| AGCAATCCCTTCAAGATAAT+TGG | - | chr4_2:42472073-42472092 | None:intergenic | 35.0% | |
| GTAATCCCTTCAAATTCAGT+TGG | - | chr4_2:42472119-42472138 | None:intergenic | 35.0% | |
| GAATTTGAAGGGATTACAGA+AGG | + | chr4_2:42472122-42472141 | Msa0600670:CDS | 35.0% | |
| TTCTTAAACACATGTGGGAA+TGG | - | chr4_2:42472270-42472289 | None:intergenic | 35.0% | |
| ! | CTGATGATGAAAATCGTCAT+GGG | + | chr4_2:42472328-42472347 | Msa0600670:CDS | 35.0% |
| ATATTGGCACAAAGTGAACT+TGG | + | chr4_2:42472433-42472452 | Msa0600670:CDS | 35.0% | |
| TATTGGCACAAAGTGAACTT+GGG | + | chr4_2:42472434-42472453 | Msa0600670:CDS | 35.0% | |
| TAATGACCTATACAGTAACC+AGG | - | chr4_2:42472588-42472607 | None:intergenic | 35.0% | |
| !!! | GTTTTTTCAGAATGCCTTCA+TGG | + | chr4_2:42472831-42472850 | Msa0600670:CDS | 35.0% |
| TGCAAACCTTGATCATTCAT+AGG | - | chr4_2:42473006-42473025 | None:intergenic | 35.0% | |
| TGAATGATCAAGGTTTGCAT+TGG | + | chr4_2:42473007-42473026 | Msa0600670:CDS | 35.0% | |
| ACATAGAGATGTCTTGAGAA+TGG | + | chr4_2:42473110-42473129 | Msa0600670:CDS | 35.0% | |
| ACTATCCATATCTCTGACTT+AGG | - | chr4_2:42473316-42473335 | None:intergenic | 35.0% | |
| TTAATGTGCGCATTGTTATC+AGG | + | chr4_2:42473679-42473698 | Msa0600670:intron | 35.0% | |
| ATCAGGTTTATCCAGATACA+AGG | + | chr4_2:42473696-42473715 | Msa0600670:intron | 35.0% | |
| TCAGGTTTATCCAGATACAA+GGG | + | chr4_2:42473697-42473716 | Msa0600670:intron | 35.0% | |
| ! | GGTTAAACTTGCCATTGATT+TGG | + | chr4_2:42473718-42473737 | Msa0600670:CDS | 35.0% |
| CTGAATTCCTCTGGATTTGT+GGG | - | chr4_2:42471024-42471043 | None:intergenic | 40.0% | |
| TCTTTCTTCTCTTGATCTGC+CGG | - | chr4_2:42471064-42471083 | None:intergenic | 40.0% | |
| AATTAAGTGTTCTCTCACCC+AGG | + | chr4_2:42471095-42471114 | Msa0600670:CDS | 40.0% | |
| ! | TTACGGGATCATCACGTTTT+GGG | - | chr4_2:42471214-42471233 | None:intergenic | 40.0% |
| ! | ATTACGGGATCATCACGTTT+TGG | - | chr4_2:42471215-42471234 | None:intergenic | 40.0% |
| AACGTGATGATCCCGTAATT+TGG | + | chr4_2:42471216-42471235 | Msa0600670:intron | 40.0% | |
| AAATGAAGCATGCTAGAGTC+AGG | - | chr4_2:42471269-42471288 | None:intergenic | 40.0% | |
| ACCAGTTCTCTCTTATCAAG+TGG | + | chr4_2:42471363-42471382 | Msa0600670:intron | 40.0% | |
| TTCTCTCTTATCAAGTGGCT+GGG | + | chr4_2:42471368-42471387 | Msa0600670:intron | 40.0% | |
| !!! | TGCTGGTGGGTTTTGAAAAT+AGG | + | chr4_2:42471646-42471665 | Msa0600670:intron | 40.0% |
| !!! | GCTGGTGGGTTTTGAAAATA+GGG | + | chr4_2:42471647-42471666 | Msa0600670:intron | 40.0% |
| ATTCAGTTGGATTCATTGGG+TGG | - | chr4_2:42472106-42472125 | None:intergenic | 40.0% | |
| !! | TACAGAAGGTGTTACTATCC+CGG | + | chr4_2:42472136-42472155 | Msa0600670:CDS | 40.0% |
| AAGTGGAAATGATTACCTCC+GGG | - | chr4_2:42472157-42472176 | None:intergenic | 40.0% | |
| CAAGTGGAAATGATTACCTC+CGG | - | chr4_2:42472158-42472177 | None:intergenic | 40.0% | |
| TAAACACATGTGGGAATGGA+TGG | - | chr4_2:42472266-42472285 | None:intergenic | 40.0% | |
| ! | GCTGATGATGAAAATCGTCA+TGG | + | chr4_2:42472327-42472346 | Msa0600670:CDS | 40.0% |
| ! | TGTGTTACTGACACTTACAC+AGG | + | chr4_2:42472404-42472423 | Msa0600670:intron | 40.0% |
| ! | GTGTTACTGACACTTACACA+GGG | + | chr4_2:42472405-42472424 | Msa0600670:intron | 40.0% |
| CTTACACAGGGAGGAAATAT+TGG | + | chr4_2:42472417-42472436 | Msa0600670:intron | 40.0% | |
| ATTGGCACAAAGTGAACTTG+GGG | + | chr4_2:42472435-42472454 | Msa0600670:CDS | 40.0% | |
| GCAATTTATAACTAACCGCC+TGG | - | chr4_2:42472513-42472532 | None:intergenic | 40.0% | |
| ! | AGCACGTATAATTGGTTTCC+TGG | + | chr4_2:42472567-42472586 | Msa0600670:intron | 40.0% |
| TGGTTTCCTGGTTACTGTAT+AGG | + | chr4_2:42472579-42472598 | Msa0600670:intron | 40.0% | |
| ! | GTACCTACCAGCAAATTTTG+CGG | + | chr4_2:42472666-42472685 | Msa0600670:CDS | 40.0% |
| GTATGTACCGCAAAATTTGC+TGG | - | chr4_2:42472676-42472695 | None:intergenic | 40.0% | |
| AAAAACTCCATGTCAGCCTT+AGG | - | chr4_2:42472817-42472836 | None:intergenic | 40.0% | |
| AAGAATAGAGGACGTTCGAA+AGG | + | chr4_2:42472855-42472874 | Msa0600670:CDS | 40.0% | |
| ! | AGGTTTGCATTGGTATCTCA+TGG | + | chr4_2:42473017-42473036 | Msa0600670:CDS | 40.0% |
| GGGTTCAACAACTGAGAAAT+TGG | - | chr4_2:42473285-42473304 | None:intergenic | 40.0% | |
| ! | TTGATTTTCAGCAACGACTC+CGG | + | chr4_2:42473405-42473424 | Msa0600670:intron | 40.0% |
| !!! | TTTTCTGGCTTGCAGCTTTA+AGG | + | chr4_2:42473555-42473574 | Msa0600670:intron | 40.0% |
| !! | AACACTTGGTGCACATGATT+TGG | + | chr4_2:42473614-42473633 | Msa0600670:intron | 40.0% |
| GCAAGTTTAACCCTTGTATC+TGG | - | chr4_2:42473710-42473729 | None:intergenic | 40.0% | |
| AGGATTCAACTCTCAAATGG+TGG | + | chr4_2:42473819-42473838 | Msa0600670:CDS | 40.0% | |
| ! | TTCAACTCTCAAATGGTGGA+TGG | + | chr4_2:42473823-42473842 | Msa0600670:CDS | 40.0% |
| TTTAATTCGGCACTTCAGCT+TGG | + | chr4_2:42473872-42473891 | Msa0600670:three_prime_UTR | 40.0% | |
| CCATTCAAGCAAATCTGTCT+AGG | - | chr4_2:42474009-42474028 | None:intergenic | 40.0% | |
| ! | CCTAGACAGATTTGCTTGAA+TGG | + | chr4_2:42474006-42474025 | Msa0600670:three_prime_UTR | 40.0% |
| AACTCAACCATGGCTGAAGA+AGG | + | chr4_2:42470983-42471002 | Msa0600670:exon | 45.0% | |
| GCTGAATTCCTCTGGATTTG+TGG | - | chr4_2:42471025-42471044 | None:intergenic | 45.0% | |
| CAAATCCAGAGGAATTCAGC+TGG | + | chr4_2:42471025-42471044 | Msa0600670:CDS | 45.0% | |
| !! | AGCTGGCTTGTGTGAAAAAC+CGG | + | chr4_2:42471042-42471061 | Msa0600670:CDS | 45.0% |
| ! | GAGTCAGGAGATGCATGTTT+TGG | - | chr4_2:42471254-42471273 | None:intergenic | 45.0% |
| GCCACTTGATAAGAGAGAAC+TGG | - | chr4_2:42471367-42471386 | None:intergenic | 45.0% | |
| GTTCTCTCTTATCAAGTGGC+TGG | + | chr4_2:42471367-42471386 | Msa0600670:intron | 45.0% | |
| GAACTATCAACACCTGTGTC+AGG | + | chr4_2:42471730-42471749 | Msa0600670:intron | 45.0% | |
| !! | GGGAATGGATGGATTGATAG+AGG | - | chr4_2:42472255-42472274 | None:intergenic | 45.0% |
| TTACTGACACTTACACAGGG+AGG | + | chr4_2:42472408-42472427 | Msa0600670:intron | 45.0% | |
| ACAAAGTGAACTTGGGGTAG+TGG | + | chr4_2:42472441-42472460 | Msa0600670:CDS | 45.0% | |
| CAAAGTGAACTTGGGGTAGT+GGG | + | chr4_2:42472442-42472461 | Msa0600670:CDS | 45.0% | |
| ! | TCAGAGTCTTGAGGGTTTTC+CGG | - | chr4_2:42472471-42472490 | None:intergenic | 45.0% |
| ATCAGGCATCAGAGTCTTGA+GGG | - | chr4_2:42472479-42472498 | None:intergenic | 45.0% | |
| AATCAGGCATCAGAGTCTTG+AGG | - | chr4_2:42472480-42472499 | None:intergenic | 45.0% | |
| CTAACACACCAACAAAGACG+TGG | + | chr4_2:42472625-42472644 | Msa0600670:CDS | 45.0% | |
| !! | GTACCGCAAAATTTGCTGGT+AGG | - | chr4_2:42472672-42472691 | None:intergenic | 45.0% |
| GAAAGCAACATGCACTTGAC+TGG | + | chr4_2:42472782-42472801 | Msa0600670:intron | 45.0% | |
| TGACTGGATGCACAATCCTA+AGG | + | chr4_2:42472798-42472817 | Msa0600670:CDS | 45.0% | |
| TGCCTTCATGGGAAGAATAG+AGG | + | chr4_2:42472843-42472862 | Msa0600670:CDS | 45.0% | |
| GTCCTCTATTCTTCCCATGA+AGG | - | chr4_2:42472848-42472867 | None:intergenic | 45.0% | |
| TTCTCAGTTGTTGAACCCAG+AGG | + | chr4_2:42473287-42473306 | Msa0600670:CDS | 45.0% | |
| GGACTCCTAAGTCAGAGATA+TGG | + | chr4_2:42473308-42473327 | Msa0600670:CDS | 45.0% | |
| ! | CTGAAAAAGCATGCGAACAC+TGG | + | chr4_2:42473777-42473796 | Msa0600670:CDS | 45.0% |
| CCTCATACCTTCTTCAGCCA+TGG | - | chr4_2:42470993-42471012 | None:intergenic | 50.0% | |
| ! | CCATGGCTGAAGAAGGTATG+AGG | + | chr4_2:42470990-42471009 | Msa0600670:exon | 50.0% |
| ! | CCTCTGGATTTGTGGGCTAT+TGG | - | chr4_2:42471017-42471036 | None:intergenic | 50.0% |
| CCAATAGCCCACAAATCCAG+AGG | + | chr4_2:42471014-42471033 | Msa0600670:CDS | 50.0% | |
| ACAAGCCAGCTGAATTCCTC+TGG | - | chr4_2:42471033-42471052 | None:intergenic | 50.0% | |
| ATGGGCAGCCACACAATCAA+TGG | - | chr4_2:42471173-42471192 | None:intergenic | 50.0% | |
| !! | AGAAGGTGTTACTATCCCGG+AGG | + | chr4_2:42472139-42472158 | Msa0600670:CDS | 50.0% |
| !! | AACTTGGGGTAGTGGGATAC+CGG | + | chr4_2:42472449-42472468 | Msa0600670:CDS | 50.0% |
| GACTCTGATGCCTGATTCTC+CGG | + | chr4_2:42472483-42472502 | Msa0600670:CDS | 50.0% | |
| TAACTAACCGCCTGGTCAAC+CGG | - | chr4_2:42472505-42472524 | None:intergenic | 50.0% | |
| ACACACCAACAAAGACGTGG+CGG | + | chr4_2:42472628-42472647 | Msa0600670:CDS | 50.0% | |
| GCTGGTAGGTACCACAAAGA+TGG | - | chr4_2:42472658-42472677 | None:intergenic | 50.0% | |
| GCACAATCCTAAGGCTGACA+TGG | + | chr4_2:42472807-42472826 | Msa0600670:CDS | 50.0% | |
| AGCAGCTTTCTTTCAGCGCA+TGG | - | chr4_2:42473087-42473106 | None:intergenic | 50.0% | |
| CTCTGACTTAGGAGTCCTCT+GGG | - | chr4_2:42473305-42473324 | None:intergenic | 50.0% | |
| TCTCTGACTTAGGAGTCCTC+TGG | - | chr4_2:42473306-42473325 | None:intergenic | 50.0% | |
| TGATTCTCCGGTTGACCAGG+CGG | + | chr4_2:42472495-42472514 | Msa0600670:CDS | 55.0% | |
| GTGTTCCGCCACGTCTTTGT+TGG | - | chr4_2:42472636-42472655 | None:intergenic | 55.0% | |
| ! | GTGGCGGAACACCATCTTTG+TGG | + | chr4_2:42472644-42472663 | Msa0600670:CDS | 55.0% |
| GCCTGATTCTCCGGTTGACC+AGG | + | chr4_2:42472492-42472511 | Msa0600670:CDS | 60.0% | |
| GCCTGGTCAACCGGAGAATC+AGG | - | chr4_2:42472496-42472515 | None:intergenic | 60.0% | |
| TCAGCAACGACTCCGGAGTC+TGG | + | chr4_2:42473412-42473431 | Msa0600670:intron | 60.0% | |
| CAGCAACGACTCCGGAGTCT+GGG | + | chr4_2:42473413-42473432 | Msa0600670:intron | 60.0% | |
| CCAAGCAGCAACCCAGACTC+CGG | - | chr4_2:42473427-42473446 | None:intergenic | 60.0% | |
| CCGGAGTCTGGGTTGCTGCT+TGG | + | chr4_2:42473424-42473443 | Msa0600670:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 42470875 | 42474039 | 42470875 | ID=Msa0600670;Name=Msa0600670 |
| chr4_2 | mRNA | 42470875 | 42474039 | 42470875 | ID=Msa0600670-mRNA-1;Parent=Msa0600670;Name=Msa0600670-mRNA-1;_AED=0.07;_eAED=0.07;_QI=117|1|1|1|1|1|10|174|358 |
| chr4_2 | exon | 42470875 | 42471116 | 42470875 | ID=Msa0600670-mRNA-1:exon:9192;Parent=Msa0600670-mRNA-1 |
| chr4_2 | exon | 42472085 | 42472160 | 42472085 | ID=Msa0600670-mRNA-1:exon:9193;Parent=Msa0600670-mRNA-1 |
| chr4_2 | exon | 42472246 | 42472349 | 42472246 | ID=Msa0600670-mRNA-1:exon:9194;Parent=Msa0600670-mRNA-1 |
| chr4_2 | exon | 42472426 | 42472516 | 42472426 | ID=Msa0600670-mRNA-1:exon:9195;Parent=Msa0600670-mRNA-1 |
| chr4_2 | exon | 42472601 | 42472687 | 42472601 | ID=Msa0600670-mRNA-1:exon:9196;Parent=Msa0600670-mRNA-1 |
| chr4_2 | exon | 42472787 | 42472876 | 42472787 | ID=Msa0600670-mRNA-1:exon:9197;Parent=Msa0600670-mRNA-1 |
| chr4_2 | exon | 42472994 | 42473131 | 42472994 | ID=Msa0600670-mRNA-1:exon:9198;Parent=Msa0600670-mRNA-1 |
| chr4_2 | exon | 42473206 | 42473333 | 42473206 | ID=Msa0600670-mRNA-1:exon:9199;Parent=Msa0600670-mRNA-1 |
| chr4_2 | exon | 42473416 | 42473488 | 42473416 | ID=Msa0600670-mRNA-1:exon:9200;Parent=Msa0600670-mRNA-1 |
| chr4_2 | exon | 42473701 | 42474039 | 42473701 | ID=Msa0600670-mRNA-1:exon:9201;Parent=Msa0600670-mRNA-1 |
| chr4_2 | five_prime_UTR | 42470875 | 42470991 | 42470875 | ID=Msa0600670-mRNA-1:five_prime_utr;Parent=Msa0600670-mRNA-1 |
| chr4_2 | CDS | 42470992 | 42471116 | 42470992 | ID=Msa0600670-mRNA-1:cds;Parent=Msa0600670-mRNA-1 |
| chr4_2 | CDS | 42472085 | 42472160 | 42472085 | ID=Msa0600670-mRNA-1:cds;Parent=Msa0600670-mRNA-1 |
| chr4_2 | CDS | 42472246 | 42472349 | 42472246 | ID=Msa0600670-mRNA-1:cds;Parent=Msa0600670-mRNA-1 |
| chr4_2 | CDS | 42472426 | 42472516 | 42472426 | ID=Msa0600670-mRNA-1:cds;Parent=Msa0600670-mRNA-1 |
| chr4_2 | CDS | 42472601 | 42472687 | 42472601 | ID=Msa0600670-mRNA-1:cds;Parent=Msa0600670-mRNA-1 |
| chr4_2 | CDS | 42472787 | 42472876 | 42472787 | ID=Msa0600670-mRNA-1:cds;Parent=Msa0600670-mRNA-1 |
| chr4_2 | CDS | 42472994 | 42473131 | 42472994 | ID=Msa0600670-mRNA-1:cds;Parent=Msa0600670-mRNA-1 |
| chr4_2 | CDS | 42473206 | 42473333 | 42473206 | ID=Msa0600670-mRNA-1:cds;Parent=Msa0600670-mRNA-1 |
| chr4_2 | CDS | 42473416 | 42473488 | 42473416 | ID=Msa0600670-mRNA-1:cds;Parent=Msa0600670-mRNA-1 |
| chr4_2 | CDS | 42473701 | 42473865 | 42473701 | ID=Msa0600670-mRNA-1:cds;Parent=Msa0600670-mRNA-1 |
| chr4_2 | three_prime_UTR | 42473866 | 42474039 | 42473866 | ID=Msa0600670-mRNA-1:three_prime_utr;Parent=Msa0600670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
