Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600810 | XP_003606095.2 | 97.120 | 382 | 11 | 0 | 1 | 382 | 79 | 460 | 0.0 | 765 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600810 | sp|Q9FV71|E2FB_ARATH | 63.333 | 360 | 111 | 6 | 13 | 355 | 83 | 438 | 2.27e-148 | 431 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600810 | A0A396I6V2 | 97.120 | 382 | 11 | 0 | 1 | 382 | 79 | 460 | 0.0 | 765 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0600810 | TF | E2F-DP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0600810 | Msa0898770 | 0.800400 | 1.467120e-48 | -8.615850e-47 |
| Msa0600810 | Msa0998620 | 0.801115 | 1.048263e-48 | -8.615850e-47 |
| Msa0600810 | Msa1111900 | 0.805835 | 1.102064e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600810 | MtrunA17_Chr4g0025881 | 97.120 | 382 | 11 | 0 | 1 | 382 | 79 | 460 | 0.0 | 765 |
| Msa0600810 | MtrunA17_Chr1g0177351 | 63.587 | 368 | 128 | 5 | 2 | 367 | 88 | 451 | 8.62e-160 | 457 |
| Msa0600810 | MtrunA17_Chr3g0142581 | 48.264 | 288 | 139 | 3 | 51 | 338 | 93 | 370 | 1.57e-84 | 261 |
| Msa0600810 | MtrunA17_Chr4g0059551 | 46.269 | 67 | 36 | 0 | 60 | 126 | 17 | 83 | 5.75e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600810 | AT5G22220.2 | 63.333 | 360 | 111 | 6 | 13 | 355 | 83 | 438 | 2.31e-149 | 431 |
| Msa0600810 | AT5G22220.3 | 63.056 | 360 | 109 | 7 | 13 | 355 | 83 | 435 | 7.86e-147 | 424 |
| Msa0600810 | AT2G36010.1 | 56.825 | 359 | 122 | 9 | 4 | 345 | 115 | 457 | 2.93e-126 | 372 |
| Msa0600810 | AT2G36010.3 | 56.787 | 361 | 121 | 10 | 4 | 345 | 115 | 459 | 7.60e-125 | 369 |
| Msa0600810 | AT2G36010.2 | 50.411 | 365 | 117 | 11 | 4 | 345 | 165 | 488 | 5.95e-98 | 301 |
| Msa0600810 | AT1G47870.1 | 50.179 | 279 | 97 | 5 | 59 | 336 | 154 | 391 | 5.44e-80 | 251 |
| Msa0600810 | AT1G47870.2 | 50.179 | 279 | 97 | 5 | 59 | 336 | 153 | 390 | 5.52e-80 | 251 |
| Msa0600810 | AT5G14960.1 | 41.892 | 74 | 43 | 0 | 53 | 126 | 6 | 79 | 3.38e-12 | 67.8 |
| Msa0600810 | AT3G01330.1 | 37.647 | 85 | 48 | 1 | 60 | 144 | 21 | 100 | 5.29e-11 | 63.9 |
| Msa0600810 | AT3G48160.1 | 43.284 | 67 | 38 | 0 | 60 | 126 | 34 | 100 | 6.98e-11 | 63.5 |
| Msa0600810 | AT3G48160.2 | 43.284 | 67 | 38 | 0 | 60 | 126 | 34 | 100 | 7.57e-11 | 63.5 |
Find 142 sgRNAs with CRISPR-Local
Find 291 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCATTACAATATACAAAAT+TGG | 0.122692 | 4_2:-42814083 | None:intergenic |
| TTCTGGACTGGGTGGAAATT+TGG | 0.170746 | 4_2:-42813100 | None:intergenic |
| TGGAGCTTTAATTGCTATTA+AGG | 0.174915 | 4_2:-42812668 | None:intergenic |
| ATTTCCTTCCCTTTATCTTC+TGG | 0.188827 | 4_2:-42813159 | None:intergenic |
| TCAATATTTGAAGCATGATT+TGG | 0.248499 | 4_2:-42813772 | None:intergenic |
| TTTCCTTCCCTTTATCTTCT+GGG | 0.249433 | 4_2:-42813158 | None:intergenic |
| CAATAGATGTTTACCTTGTT+AGG | 0.273630 | 4_2:+42812865 | Msa0600810:CDS |
| TTGTTAACTTTGTTAACTTC+TGG | 0.286522 | 4_2:-42813117 | None:intergenic |
| TGCAGAGTGATGCTGATTAC+TGG | 0.287148 | 4_2:+42813492 | Msa0600810:intron |
| AAAGAACTTGCCCTGCTTCC+AGG | 0.295888 | 4_2:+42812521 | Msa0600810:CDS |
| TCAATCCAACCTCGCAGGTC+TGG | 0.301085 | 4_2:-42813907 | None:intergenic |
| ACAATCAATAGAAAATATTA+TGG | 0.302137 | 4_2:-42810552 | None:intergenic |
| GGACTATCCTGTATCTTCTC+TGG | 0.310480 | 4_2:-42812824 | None:intergenic |
| CAATATTTGAAGCATGATTT+GGG | 0.315454 | 4_2:-42813771 | None:intergenic |
| CTAACAAGGTAAACATCTAT+TGG | 0.320099 | 4_2:-42812864 | None:intergenic |
| AAGAACGCCACTTTCTCTTC+AGG | 0.321260 | 4_2:-42813856 | None:intergenic |
| GCCGGTTGGATGAACAAATA+AGG | 0.325041 | 4_2:+42812218 | Msa0600810:CDS |
| AAGTTTCATATGACATTCTA+TGG | 0.334315 | 4_2:+42814220 | Msa0600810:three_prime_UTR |
| CAAACCCCTGGATCAAATAT+TGG | 0.340323 | 4_2:+42810760 | Msa0600810:CDS |
| TCTGTTCAGACGCCTGTATC+TGG | 0.353596 | 4_2:+42810679 | Msa0600810:CDS |
| AACTTTGTTAACTTCTGGAC+TGG | 0.365621 | 4_2:-42813112 | None:intergenic |
| TCTTCTGGGACCACAGTTGA+TGG | 0.368300 | 4_2:-42813144 | None:intergenic |
| TTCCCCGCCTTTCCAGATAC+AGG | 0.368366 | 4_2:-42810691 | None:intergenic |
| TCCTCTTAAATTACCTCATC+AGG | 0.378875 | 4_2:-42812718 | None:intergenic |
| TTGAAGCTGATTCAGGTGAT+AGG | 0.380824 | 4_2:+42810623 | Msa0600810:five_prime_UTR |
| TAATGCTGCTGACACATTAG+AGG | 0.382091 | 4_2:+42811586 | Msa0600810:CDS |
| TGTCGATATGACAGCTCATT+AGG | 0.389268 | 4_2:+42811001 | Msa0600810:CDS |
| ACCTTATTTGTTCATCCAAC+CGG | 0.394452 | 4_2:-42812219 | None:intergenic |
| GACTATCCTGTATCTTCTCT+GGG | 0.396885 | 4_2:-42812823 | None:intergenic |
| CCATTACAATATACAAAATT+GGG | 0.401529 | 4_2:-42814082 | None:intergenic |
| TTGGGCCCATTGTGCTTCTC+AGG | 0.407562 | 4_2:-42812845 | None:intergenic |
| TCAATTTGAAGAGAAGTTTG+AGG | 0.408550 | 4_2:+42813053 | Msa0600810:CDS |
| GACCTGCGAGGTTGGATTGA+AGG | 0.412522 | 4_2:+42813910 | Msa0600810:three_prime_UTR |
| CAATCCAACCTCGCAGGTCT+GGG | 0.414239 | 4_2:-42813906 | None:intergenic |
| CAGGTCTGGGTGGATGTCAT+AGG | 0.423398 | 4_2:-42813893 | None:intergenic |
| TGAAGTAGAATTTCGCTCTC+AGG | 0.425268 | 4_2:+42814177 | Msa0600810:three_prime_UTR |
| ACAAATGTTCTTGAAGGGAT+TGG | 0.428377 | 4_2:+42811715 | Msa0600810:CDS |
| TAACAAGGTAAACATCTATT+GGG | 0.432965 | 4_2:-42812863 | None:intergenic |
| TTGGCTGCTGCAGTGGATCC+AGG | 0.433496 | 4_2:-42810652 | None:intergenic |
| ACGTTCTGTTCTCCACATAT+CGG | 0.435938 | 4_2:-42813543 | None:intergenic |
| AATTGAAAATTTAACAATTG+AGG | 0.437163 | 4_2:+42812192 | Msa0600810:CDS |
| TATTCACCAATATTTGATCC+AGG | 0.437164 | 4_2:-42810766 | None:intergenic |
| TTGAGGCTTCATCCTACAGT+AGG | 0.437988 | 4_2:-42813817 | None:intergenic |
| GGAAATAATCTCACCCCTGC+TGG | 0.438993 | 4_2:+42810974 | Msa0600810:CDS |
| GATATTACAAATGTTCTTGA+AGG | 0.450884 | 4_2:+42811709 | Msa0600810:CDS |
| GACTGGCCATTCAACTCCTC+AGG | 0.466044 | 4_2:-42813975 | None:intergenic |
| CTGTGGTCCCAGAAGATAAA+GGG | 0.466071 | 4_2:+42813151 | Msa0600810:CDS |
| AGGCGTCTGAACAGAACTAT+TGG | 0.467482 | 4_2:-42810671 | None:intergenic |
| TCATATCGACATGGACCAGC+AGG | 0.470858 | 4_2:-42810989 | None:intergenic |
| GAGTTGAATGGCCAGTCAAA+TGG | 0.472674 | 4_2:+42813981 | Msa0600810:three_prime_UTR |
| CTGTAGGATGAAGCCTCAAA+AGG | 0.474980 | 4_2:+42813821 | Msa0600810:exon |
| ACGCCTGTATCTGGAAAGGC+GGG | 0.480089 | 4_2:+42810688 | Msa0600810:CDS |
| TAAATTACCTCATCAGGATC+AGG | 0.485605 | 4_2:-42812712 | None:intergenic |
| TGTATCTGGAAAGGCGGGGA+AGG | 0.492656 | 4_2:+42810693 | Msa0600810:CDS |
| TCCACCCAGACCTGCGAGGT+TGG | 0.496081 | 4_2:+42813902 | Msa0600810:three_prime_UTR |
| AGGGAAACTAACCTGGAAGC+AGG | 0.501301 | 4_2:-42812532 | None:intergenic |
| ATATTACAAATGTTCTTGAA+GGG | 0.502697 | 4_2:+42811710 | Msa0600810:CDS |
| ACTTTGTTAACTTCTGGACT+GGG | 0.504154 | 4_2:-42813111 | None:intergenic |
| TGTGTCTACAGGTGCAAAAG+AGG | 0.505867 | 4_2:+42811677 | Msa0600810:intron |
| AGCTCCACATGGTACCACTT+TGG | 0.505985 | 4_2:+42812684 | Msa0600810:CDS |
| ACTCACGAAGTCGTGATTGT+TGG | 0.507659 | 4_2:-42813226 | None:intergenic |
| AACAATCACGACTTCGTGAG+TGG | 0.509503 | 4_2:+42813228 | Msa0600810:CDS |
| TTAGTCTCCGCAGGTGCTCG+TGG | 0.510239 | 4_2:-42810528 | None:intergenic |
| ACTGTGGTCCCAGAAGATAA+AGG | 0.510416 | 4_2:+42813150 | Msa0600810:CDS |
| TGAGGCTTCATCCTACAGTA+GGG | 0.512617 | 4_2:-42813816 | None:intergenic |
| AAACTATCATCGGCCTCCCC+TGG | 0.512893 | 4_2:-42811887 | None:intergenic |
| TAGTCTCCGCAGGTGCTCGT+GGG | 0.513338 | 4_2:-42810527 | None:intergenic |
| GGGCTGGATGTTTCAAAACC+AGG | 0.516489 | 4_2:+42811869 | Msa0600810:CDS |
| ATAGTCCTGAGAAGCACAAT+GGG | 0.520665 | 4_2:+42812840 | Msa0600810:CDS |
| AGAACTATTGGCTGCTGCAG+TGG | 0.520736 | 4_2:-42810659 | None:intergenic |
| TCAGGTGATAGGATGACTCC+TGG | 0.524104 | 4_2:+42810634 | Msa0600810:exon |
| GTATCTGGAAAGGCGGGGAA+GGG | 0.525349 | 4_2:+42810694 | Msa0600810:CDS |
| TATTTACAGCTGGAGTAGAA+TGG | 0.525592 | 4_2:+42813692 | Msa0600810:intron |
| GCGCGACGTGTATGTTTGAA+AGG | 0.527718 | 4_2:+42814126 | Msa0600810:three_prime_UTR |
| ATTATCCCCAGAGAAGATAC+AGG | 0.527897 | 4_2:+42812817 | Msa0600810:CDS |
| AACAATTGAGGAACGCCGGT+TGG | 0.534246 | 4_2:+42812204 | Msa0600810:CDS |
| ACTTCAAGAAGAATATTGTA+TGG | 0.535285 | 4_2:+42813729 | Msa0600810:CDS |
| ATTCACCAATATTTGATCCA+GGG | 0.536912 | 4_2:-42810765 | None:intergenic |
| TTCGCTCTCAGGCAAAGCGC+TGG | 0.538755 | 4_2:+42814188 | Msa0600810:three_prime_UTR |
| GCTTCATCCTACAGTAGGGT+TGG | 0.540759 | 4_2:-42813812 | None:intergenic |
| TTCACCAATATTTGATCCAG+GGG | 0.542521 | 4_2:-42810764 | None:intergenic |
| AGAACTGGAACTCAAACCCC+TGG | 0.557244 | 4_2:+42810748 | Msa0600810:CDS |
| TGTACAATTAGCCATTTGAC+TGG | 0.562651 | 4_2:-42813992 | None:intergenic |
| TCTAGAAGTACAAAGTCACT+TGG | 0.563803 | 4_2:-42814032 | None:intergenic |
| GTGCAGAGACAAGATGGTGA+AGG | 0.564861 | 4_2:+42813186 | Msa0600810:CDS |
| TCTGGAAAGGCGGGGAAGGG+AGG | 0.567142 | 4_2:+42810697 | Msa0600810:CDS |
| TATTATGGATTAGTCTCCGC+AGG | 0.567732 | 4_2:-42810537 | None:intergenic |
| AACCTTCAATCCAACCTCGC+AGG | 0.568624 | 4_2:-42813912 | None:intergenic |
| ATAGAAGTGCAGAGACAAGA+TGG | 0.570446 | 4_2:+42813180 | Msa0600810:CDS |
| AAGTGACTTTGTACTTCTAG+AGG | 0.571747 | 4_2:+42814034 | Msa0600810:three_prime_UTR |
| GCTTGTCCTGAGGAGTTGAA+TGG | 0.572667 | 4_2:+42813969 | Msa0600810:three_prime_UTR |
| GGCTGGATGTTTCAAAACCA+GGG | 0.577072 | 4_2:+42811870 | Msa0600810:CDS |
| ATGTTAGCATAACCGATATG+TGG | 0.584905 | 4_2:+42813531 | Msa0600810:CDS |
| GGATGTCATAGGTTCTCAGT+TGG | 0.585261 | 4_2:-42813882 | None:intergenic |
| TTAATAAAACAAGCAGAGGA+TGG | 0.586297 | 4_2:+42811548 | Msa0600810:CDS |
| CGAGTTAATAAAACAAGCAG+AGG | 0.589364 | 4_2:+42811544 | Msa0600810:CDS |
| GCTGGATGTTTCAAAACCAG+GGG | 0.589441 | 4_2:+42811871 | Msa0600810:CDS |
| AACATTAAGCATACCTAACA+AGG | 0.592586 | 4_2:-42812878 | None:intergenic |
| GGGAGATGCAAGAAAGACTA+CGG | 0.594499 | 4_2:+42812336 | Msa0600810:intron |
| ACAGTAGGGTTGGATGCAGA+AGG | 0.603796 | 4_2:-42813802 | None:intergenic |
| ATGCTTACAGCAACATCTGA+AGG | 0.604268 | 4_2:-42813267 | None:intergenic |
| GACGCCTGTATCTGGAAAGG+CGG | 0.604699 | 4_2:+42810687 | Msa0600810:CDS |
| ATTTAACAATTGAGGAACGC+CGG | 0.605519 | 4_2:+42812200 | Msa0600810:CDS |
| GGGGTGAGATTATTTCCTGA+AGG | 0.606593 | 4_2:-42810968 | None:intergenic |
| CATATCGACATGGACCAGCA+GGG | 0.607007 | 4_2:-42810988 | None:intergenic |
| GGGAAACTAACCTGGAAGCA+GGG | 0.607358 | 4_2:-42812531 | None:intergenic |
| ATGCTTCAAATATTGATGAA+CGG | 0.607410 | 4_2:+42813779 | Msa0600810:CDS |
| TCTGCATCCAACCCTACTGT+AGG | 0.610294 | 4_2:+42813805 | Msa0600810:CDS |
| TTGTTAACTTCTGGACTGGG+TGG | 0.611129 | 4_2:-42813108 | None:intergenic |
| TGCAGAGACAAGATGGTGAA+GGG | 0.612592 | 4_2:+42813187 | Msa0600810:CDS |
| AATATTTGAAGCATGATTTG+GGG | 0.617491 | 4_2:-42813770 | None:intergenic |
| GGTATCCCCACGAGCACCTG+CGG | 0.618596 | 4_2:+42810521 | Msa0600810:five_prime_UTR |
| AGCTCAAGAACAGAATTCAG+TGG | 0.618807 | 4_2:+42811752 | Msa0600810:CDS |
| AGTCTCCGCAGGTGCTCGTG+GGG | 0.621455 | 4_2:-42810526 | None:intergenic |
| ATACATTTCAGCAATTGAAG+CGG | 0.622738 | 4_2:+42810581 | Msa0600810:five_prime_UTR |
| GTCTACAGGTGCAAAAGAGG+AGG | 0.622913 | 4_2:+42811680 | Msa0600810:intron |
| TCCAACCTCGCAGGTCTGGG+TGG | 0.623480 | 4_2:-42813903 | None:intergenic |
| GATAGTCCTGAGAAGCACAA+TGG | 0.625691 | 4_2:+42812839 | Msa0600810:CDS |
| GGAAGGGAGGAAAATCCTCT+AGG | 0.631535 | 4_2:+42810710 | Msa0600810:CDS |
| TTGTTGGTAAGATCTGTACT+AGG | 0.631622 | 4_2:-42813210 | None:intergenic |
| ACAATCACGACTTCGTGAGT+GGG | 0.632953 | 4_2:+42813229 | Msa0600810:CDS |
| GGATGTTTCAAAACCAGGGG+AGG | 0.633132 | 4_2:+42811874 | Msa0600810:CDS |
| GGAAGTACCTGATCCTGATG+AGG | 0.635583 | 4_2:+42812705 | Msa0600810:CDS |
| AGAAGTTAACAAAGTTAACA+AGG | 0.642145 | 4_2:+42813119 | Msa0600810:CDS |
| TCAGACGCCTGTATCTGGAA+AGG | 0.645384 | 4_2:+42810684 | Msa0600810:CDS |
| AGGATCAGGTACTTCCAAAG+TGG | 0.647576 | 4_2:-42812698 | None:intergenic |
| AGGTGCTCGTGGGGATACCG+TGG | 0.654500 | 4_2:-42810517 | None:intergenic |
| AAAGTAGAAGTTAATAACGA+GGG | 0.654655 | 4_2:-42814261 | None:intergenic |
| ATATCGACATGGACCAGCAG+GGG | 0.655262 | 4_2:-42810987 | None:intergenic |
| GAGAAGTTTGAGGAGATCCA+CGG | 0.655684 | 4_2:+42813063 | Msa0600810:CDS |
| TCATCAAGAAGCTTGTCCTG+AGG | 0.669807 | 4_2:+42813959 | Msa0600810:three_prime_UTR |
| CATATCGGTTATGCTAACAT+CGG | 0.684451 | 4_2:-42813528 | None:intergenic |
| GGTCCCAGAAGATAAAGGGA+AGG | 0.692159 | 4_2:+42813155 | Msa0600810:CDS |
| CGCCTGTATCTGGAAAGGCG+GGG | 0.701641 | 4_2:+42810689 | Msa0600810:CDS |
| GAAAGTAGAAGTTAATAACG+AGG | 0.702569 | 4_2:-42814262 | None:intergenic |
| GACATCCACCCAGACCTGCG+AGG | 0.708386 | 4_2:+42813898 | Msa0600810:three_prime_UTR |
| AATGAGCTGTCATATCGACA+TGG | 0.710086 | 4_2:-42810998 | None:intergenic |
| ACTATCCTGTATCTTCTCTG+GGG | 0.711189 | 4_2:-42812822 | None:intergenic |
| ACTTCCAAAGTGGTACCATG+TGG | 0.714904 | 4_2:-42812688 | None:intergenic |
| ATAGCAATTAAAGCTCCACA+TGG | 0.715913 | 4_2:+42812673 | Msa0600810:CDS |
| TAACAAGGATCCATCAACTG+TGG | 0.718425 | 4_2:+42813134 | Msa0600810:CDS |
| TGGATGCAACATCAACACCG+TGG | 0.767009 | 4_2:-42813080 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATATTTTTTATATAATTT+TGG | + | chr4_2:42810937-42810956 | Msa0600810:intron | 0.0% |
| !!! | TTATTTTCTTTGAATATATT+AGG | - | chr4_2:42810837-42810856 | None:intergenic | 10.0% |
| !!! | TTCAAAGAAAATAAATATTT+TGG | + | chr4_2:42810843-42810862 | Msa0600810:intron | 10.0% |
| !!! | TCTTGTATATAAATTTATTT+TGG | + | chr4_2:42812606-42812625 | Msa0600810:intron | 10.0% |
| !! | ACAATCAATAGAAAATATTA+TGG | - | chr4_2:42810555-42810574 | None:intergenic | 15.0% |
| !!! | ATTTTTTATATAATTTTGGC+AGG | + | chr4_2:42810941-42810960 | Msa0600810:intron | 15.0% |
| !! | TGTTTAACAATATGATATAT+AGG | - | chr4_2:42811495-42811514 | None:intergenic | 15.0% |
| !! | TTTCTGACTTATATAATTTA+TGG | + | chr4_2:42812088-42812107 | Msa0600810:intron | 15.0% |
| !! | TATTAAATCCTTATAAATGT+TGG | + | chr4_2:42812133-42812152 | Msa0600810:intron | 15.0% |
| !! | AATTGAAAATTTAACAATTG+AGG | + | chr4_2:42812192-42812211 | Msa0600810:CDS | 15.0% |
| !!! | TTTTATTTGTTTATTATTGC+AGG | + | chr4_2:42812315-42812334 | Msa0600810:intron | 15.0% |
| !! | TTTATTTGTTTATTATTGCA+GGG | + | chr4_2:42812316-42812335 | Msa0600810:intron | 15.0% |
| !! | AAATTATGAACATATAAGTA+CGG | - | chr4_2:42812432-42812451 | None:intergenic | 15.0% |
| !!! | AATTTATTTTGGATTTTAAC+TGG | + | chr4_2:42812617-42812636 | Msa0600810:intron | 15.0% |
| !! | AGGAAATTACAAAAAAATTA+TGG | - | chr4_2:42813667-42813686 | None:intergenic | 15.0% |
| !!! | TAATCTTTTTTTTTAAGCCA+CGG | + | chr4_2:42810500-42810519 | Msa0600810:five_prime_UTR | 20.0% |
| !!! | TTTCCTTTAATTATCGATTT+TGG | + | chr4_2:42810903-42810922 | Msa0600810:intron | 20.0% |
| !!! | TTCCTTTAATTATCGATTTT+GGG | + | chr4_2:42810904-42810923 | Msa0600810:intron | 20.0% |
| !! | CTAATCAAAACTGAAAAATT+AGG | - | chr4_2:42811032-42811051 | None:intergenic | 20.0% |
| !! | ATTAGTTAATTGTTGATCAT+CGG | + | chr4_2:42811047-42811066 | Msa0600810:intron | 20.0% |
| !! | CAAATTATATTTAGTTAGGA+GGG | - | chr4_2:42811266-42811285 | None:intergenic | 20.0% |
| !! | CAGTAAAACATTTAAAGAAA+GGG | - | chr4_2:42811442-42811461 | None:intergenic | 20.0% |
| !! | TCATATTGTTAAACACAAAT+AGG | + | chr4_2:42811500-42811519 | Msa0600810:intron | 20.0% |
| !! | ATATTACAAATGTTCTTGAA+GGG | + | chr4_2:42811710-42811729 | Msa0600810:CDS | 20.0% |
| !!! | CAACATTTTGGATAAAATTA+TGG | - | chr4_2:42811813-42811832 | None:intergenic | 20.0% |
| !! | TAAACTAGAAAAACTATCAT+CGG | - | chr4_2:42811900-42811919 | None:intergenic | 20.0% |
| !!! | AAGGATGAATTTTTTATCTT+TGG | + | chr4_2:42811929-42811948 | Msa0600810:intron | 20.0% |
| !!! | GTAAAGCATACTTTTTTATT+TGG | + | chr4_2:42812046-42812065 | Msa0600810:intron | 20.0% |
| !!! | TTTTTCCTAAATCCATATTT+TGG | + | chr4_2:42812398-42812417 | Msa0600810:intron | 20.0% |
| !! | TTCATTGTAATTCATAGATA+GGG | - | chr4_2:42812554-42812573 | None:intergenic | 20.0% |
| !! | ATTCATTGTAATTCATAGAT+AGG | - | chr4_2:42812555-42812574 | None:intergenic | 20.0% |
| !!! | TTACAATGAATATTTTGATG+TGG | + | chr4_2:42812564-42812583 | Msa0600810:intron | 20.0% |
| !! | AATTTATATACAAGAAGCAA+AGG | - | chr4_2:42812601-42812620 | None:intergenic | 20.0% |
| !!! | TTTTGTATTTGCAATTTGTT+AGG | + | chr4_2:42813315-42813334 | Msa0600810:intron | 20.0% |
| !!! | TTGCATGTTTTTTGTTTTAA+AGG | + | chr4_2:42813407-42813426 | Msa0600810:intron | 20.0% |
| !! | CCATTACAATATACAAAATT+GGG | - | chr4_2:42814085-42814104 | None:intergenic | 20.0% |
| !! | ACCATTACAATATACAAAAT+TGG | - | chr4_2:42814086-42814105 | None:intergenic | 20.0% |
| !!! | AATTTTGTATATTGTAATGG+TGG | + | chr4_2:42814085-42814104 | Msa0600810:three_prime_UTR | 20.0% |
| !!! | ATTTTGTATATTGTAATGGT+GGG | + | chr4_2:42814086-42814105 | Msa0600810:three_prime_UTR | 20.0% |
| !! | TTTTCGAAACTTTGTTAAGT+AGG | + | chr4_2:42810792-42810811 | Msa0600810:intron | 25.0% |
| ! | ATCGATAATTAAAGGAAAGA+TGG | - | chr4_2:42810901-42810920 | None:intergenic | 25.0% |
| ! | TACCCAAAATCGATAATTAA+AGG | - | chr4_2:42810909-42810928 | None:intergenic | 25.0% |
| ! | GTAATGTGTAAAGTAAACAA+TGG | - | chr4_2:42811244-42811263 | None:intergenic | 25.0% |
| ! | CCAAATTATATTTAGTTAGG+AGG | - | chr4_2:42811267-42811286 | None:intergenic | 25.0% |
| ! | CCTCCTAACTAAATATAATT+TGG | + | chr4_2:42811264-42811283 | Msa0600810:intron | 25.0% |
| ! | CCACCAAATTATATTTAGTT+AGG | - | chr4_2:42811270-42811289 | None:intergenic | 25.0% |
| ! | CCTAACTAAATATAATTTGG+TGG | + | chr4_2:42811267-42811286 | Msa0600810:intron | 25.0% |
| !!! | TTTAAGTTGAACCAATGTTT+AGG | + | chr4_2:42811341-42811360 | Msa0600810:intron | 25.0% |
| !!! | TTAAGTTGAACCAATGTTTA+GGG | + | chr4_2:42811342-42811361 | Msa0600810:intron | 25.0% |
| ! | CCAGTAAAACATTTAAAGAA+AGG | - | chr4_2:42811443-42811462 | None:intergenic | 25.0% |
| !! | CCTTTCTTTAAATGTTTTAC+TGG | + | chr4_2:42811440-42811459 | Msa0600810:intron | 25.0% |
| ! | GATATTACAAATGTTCTTGA+AGG | + | chr4_2:42811709-42811728 | Msa0600810:CDS | 25.0% |
| !!! | TCTTGAGCTTTTTTTCTATA+AGG | - | chr4_2:42811741-42811760 | None:intergenic | 25.0% |
| !!! | GTAAAAGTGTTTCAACATTT+TGG | - | chr4_2:42811825-42811844 | None:intergenic | 25.0% |
| !!! | TGATAGTTTTTCTAGTTTAC+AGG | + | chr4_2:42811901-42811920 | Msa0600810:CDS | 25.0% |
| !! | TCTTTAAAAGTTAGAAAGAC+TGG | + | chr4_2:42811972-42811991 | Msa0600810:intron | 25.0% |
| ! | ATGGCATATAATAGATTTGA+TGG | + | chr4_2:42812107-42812126 | Msa0600810:intron | 25.0% |
| ! | ATCAAACACCAACATTTATA+AGG | - | chr4_2:42812144-42812163 | None:intergenic | 25.0% |
| ! | ATAAACTCTTAATAGACAAC+AGG | - | chr4_2:42812296-42812315 | None:intergenic | 25.0% |
| ! | AATGACCAAAATATGGATTT+AGG | - | chr4_2:42812406-42812425 | None:intergenic | 25.0% |
| ! | TAACAAGGTAAACATCTATT+GGG | - | chr4_2:42812866-42812885 | None:intergenic | 25.0% |
| !! | TTAGGTATGCTTAATGTTTT+TGG | + | chr4_2:42812883-42812902 | Msa0600810:intron | 25.0% |
| !! | TAGGTATGCTTAATGTTTTT+GGG | + | chr4_2:42812884-42812903 | Msa0600810:intron | 25.0% |
| ! | TTGTTAACTTTGTTAACTTC+TGG | - | chr4_2:42813120-42813139 | None:intergenic | 25.0% |
| ! | AGAAGTTAACAAAGTTAACA+AGG | + | chr4_2:42813119-42813138 | Msa0600810:CDS | 25.0% |
| ! | TTCTGATAAGAAAAAAACCT+TGG | + | chr4_2:42813442-42813461 | Msa0600810:intron | 25.0% |
| ! | ACTTCAAGAAGAATATTGTA+TGG | + | chr4_2:42813729-42813748 | Msa0600810:CDS | 25.0% |
| !! | AATATTTGAAGCATGATTTG+GGG | - | chr4_2:42813773-42813792 | None:intergenic | 25.0% |
| !! | CAATATTTGAAGCATGATTT+GGG | - | chr4_2:42813774-42813793 | None:intergenic | 25.0% |
| !! | TCAATATTTGAAGCATGATT+TGG | - | chr4_2:42813775-42813794 | None:intergenic | 25.0% |
| ! | ATGCTTCAAATATTGATGAA+CGG | + | chr4_2:42813779-42813798 | Msa0600810:CDS | 25.0% |
| !! | GTTCAAAATAAATCCTTTTG+AGG | - | chr4_2:42813837-42813856 | None:intergenic | 25.0% |
| !! | CCCAATTTTGTATATTGTAA+TGG | + | chr4_2:42814082-42814101 | Msa0600810:three_prime_UTR | 25.0% |
| !! | TTTTGTATATTGTAATGGTG+GGG | + | chr4_2:42814087-42814106 | Msa0600810:three_prime_UTR | 25.0% |
| ! | AAGTTTCATATGACATTCTA+TGG | + | chr4_2:42814220-42814239 | Msa0600810:three_prime_UTR | 25.0% |
| ! | AAAGTAGAAGTTAATAACGA+GGG | - | chr4_2:42814264-42814283 | None:intergenic | 25.0% |
| ATACATTTCAGCAATTGAAG+CGG | + | chr4_2:42810581-42810600 | Msa0600810:five_prime_UTR | 30.0% | |
| ATTCACCAATATTTGATCCA+GGG | - | chr4_2:42810768-42810787 | None:intergenic | 30.0% | |
| TATTCACCAATATTTGATCC+AGG | - | chr4_2:42810769-42810788 | None:intergenic | 30.0% | |
| ! | ACTAAATATAATTTGGTGGC+AGG | + | chr4_2:42811271-42811290 | Msa0600810:intron | 30.0% |
| ! | TAAGTTGAACCAATGTTTAG+GGG | + | chr4_2:42811343-42811362 | Msa0600810:intron | 30.0% |
| TTAATAAAACAAGCAGAGGA+TGG | + | chr4_2:42811548-42811567 | Msa0600810:CDS | 30.0% | |
| TGGTCAATTATCAAAGGAAT+TGG | - | chr4_2:42811847-42811866 | None:intergenic | 30.0% | |
| ! | AATTCCTTTGATAATTGACC+AGG | + | chr4_2:42811846-42811865 | Msa0600810:intron | 30.0% |
| ! | ATTCCTTTGATAATTGACCA+GGG | + | chr4_2:42811847-42811866 | Msa0600810:intron | 30.0% |
| !!! | GTTTTTCTAGTTTACAGGTT+AGG | + | chr4_2:42811906-42811925 | Msa0600810:intron | 30.0% |
| TTGGATGAACAAATAAGGTT+TGG | + | chr4_2:42812223-42812242 | Msa0600810:intron | 30.0% | |
| TGGATGAACAAATAAGGTTT+GGG | + | chr4_2:42812224-42812243 | Msa0600810:intron | 30.0% | |
| TAATCTCTTTCCACTCTTAA+AGG | + | chr4_2:42812472-42812491 | Msa0600810:intron | 30.0% | |
| ! | CAAAAAGAAACCTTTAAGAG+TGG | - | chr4_2:42812485-42812504 | None:intergenic | 30.0% |
| ! | TTGCTATTAAGGTTTCATTC+TGG | - | chr4_2:42812660-42812679 | None:intergenic | 30.0% |
| ! | TGGAGCTTTAATTGCTATTA+AGG | - | chr4_2:42812671-42812690 | None:intergenic | 30.0% |
| ! | CAAATTCCCTTTTTCCTATT+AGG | + | chr4_2:42812788-42812807 | Msa0600810:intron | 30.0% |
| CTAACAAGGTAAACATCTAT+TGG | - | chr4_2:42812867-42812886 | None:intergenic | 30.0% | |
| CAATAGATGTTTACCTTGTT+AGG | + | chr4_2:42812865-42812884 | Msa0600810:CDS | 30.0% | |
| AACATTAAGCATACCTAACA+AGG | - | chr4_2:42812881-42812900 | None:intergenic | 30.0% | |
| ! | TTTTGCTAACATTTGCTTCA+AGG | + | chr4_2:42812909-42812928 | Msa0600810:intron | 30.0% |
| TTTGCTAACATTTGCTTCAA+GGG | + | chr4_2:42812910-42812929 | Msa0600810:intron | 30.0% | |
| TCTCTTCAAATTGACTACAA+TGG | - | chr4_2:42813047-42813066 | None:intergenic | 30.0% | |
| TCAATTTGAAGAGAAGTTTG+AGG | + | chr4_2:42813053-42813072 | Msa0600810:CDS | 30.0% | |
| ACAATTTCAAATTAGCTCCA+AGG | - | chr4_2:42813462-42813481 | None:intergenic | 30.0% | |
| AATGAATGAAATGGAGACTA+AGG | - | chr4_2:42813583-42813602 | None:intergenic | 30.0% | |
| TGTGTGTGTAATGAATGAAA+TGG | - | chr4_2:42813592-42813611 | None:intergenic | 30.0% | |
| TTCCTTGATATATTTACAGC+TGG | + | chr4_2:42813682-42813701 | Msa0600810:intron | 30.0% | |
| TCTAGAGGAAAAAAAAAACG+TGG | + | chr4_2:42814049-42814068 | Msa0600810:three_prime_UTR | 30.0% | |
| GAAAGTAGAAGTTAATAACG+AGG | - | chr4_2:42814265-42814284 | None:intergenic | 30.0% | |
| ATGACAAAAAGCAACAGAAC+TGG | + | chr4_2:42810733-42810752 | Msa0600810:CDS | 35.0% | |
| TTCACCAATATTTGATCCAG+GGG | - | chr4_2:42810767-42810786 | None:intergenic | 35.0% | |
| AGTTAATTGTTGATCATCGG+TGG | + | chr4_2:42811050-42811069 | Msa0600810:intron | 35.0% | |
| TGGTGGAGGTTATTTGAAAA+CGG | - | chr4_2:42811134-42811153 | None:intergenic | 35.0% | |
| TGTCATGAAAAAAAGGTTGG+TGG | - | chr4_2:42811151-42811170 | None:intergenic | 35.0% | |
| GAGTGTCATGAAAAAAAGGT+TGG | - | chr4_2:42811154-42811173 | None:intergenic | 35.0% | |
| GACTGAGTGTCATGAAAAAA+AGG | - | chr4_2:42811158-42811177 | None:intergenic | 35.0% | |
| TCAACTTAAACCAGAGTTGA+GGG | - | chr4_2:42811190-42811209 | None:intergenic | 35.0% | |
| TTCAACTTAAACCAGAGTTG+AGG | - | chr4_2:42811191-42811210 | None:intergenic | 35.0% | |
| AAGTTGAACCAATGTTTAGG+GGG | + | chr4_2:42811344-42811363 | Msa0600810:intron | 35.0% | |
| AATGGCTAAAACAGGTTAAG+TGG | + | chr4_2:42811371-42811390 | Msa0600810:intron | 35.0% | |
| ATGGCTAAAACAGGTTAAGT+GGG | + | chr4_2:42811372-42811391 | Msa0600810:intron | 35.0% | |
| TACTGGTGAGTAAAGTTTGA+AGG | + | chr4_2:42811457-42811476 | Msa0600810:intron | 35.0% | |
| CGAGTTAATAAAACAAGCAG+AGG | + | chr4_2:42811544-42811563 | Msa0600810:CDS | 35.0% | |
| AAAGATTCCTTGCTCATTAC+TGG | + | chr4_2:42811628-42811647 | Msa0600810:intron | 35.0% | |
| AAACATTCCAGTAATGAGCA+AGG | - | chr4_2:42811638-42811657 | None:intergenic | 35.0% | |
| ACAAATGTTCTTGAAGGGAT+TGG | + | chr4_2:42811715-42811734 | Msa0600810:CDS | 35.0% | |
| ! | TTCCTTTGATAATTGACCAG+GGG | + | chr4_2:42811848-42811867 | Msa0600810:intron | 35.0% |
| !! | TTCTAGTTTACAGGTTAGGA+AGG | + | chr4_2:42811910-42811929 | Msa0600810:intron | 35.0% |
| !! | TGTTTTTGTTTCCCATATGC+AGG | + | chr4_2:42812165-42812184 | Msa0600810:intron | 35.0% |
| TTCAATTTCTGCCTGCATAT+GGG | - | chr4_2:42812179-42812198 | None:intergenic | 35.0% | |
| TTTCAATTTCTGCCTGCATA+TGG | - | chr4_2:42812180-42812199 | None:intergenic | 35.0% | |
| ATTTAACAATTGAGGAACGC+CGG | + | chr4_2:42812200-42812219 | Msa0600810:CDS | 35.0% | |
| ! | ACCTTATTTGTTCATCCAAC+CGG | - | chr4_2:42812222-42812241 | None:intergenic | 35.0% |
| CAACAAAGAAGAATCAGCAA+AGG | - | chr4_2:42812256-42812275 | None:intergenic | 35.0% | |
| ACGGCTAAATGACCAAAATA+TGG | - | chr4_2:42812413-42812432 | None:intergenic | 35.0% | |
| ! | AAGGTTTCTTTTTGTCACTG+AGG | + | chr4_2:42812491-42812510 | Msa0600810:intron | 35.0% |
| TAAGGTTTCATTCTGGCAAT+AGG | - | chr4_2:42812653-42812672 | None:intergenic | 35.0% | |
| ATAGCAATTAAAGCTCCACA+TGG | + | chr4_2:42812673-42812692 | Msa0600810:CDS | 35.0% | |
| TAAATTACCTCATCAGGATC+AGG | - | chr4_2:42812715-42812734 | None:intergenic | 35.0% | |
| TCCTGATGAGGTAATTTAAG+AGG | + | chr4_2:42812717-42812736 | Msa0600810:intron | 35.0% | |
| TCCTCTTAAATTACCTCATC+AGG | - | chr4_2:42812721-42812740 | None:intergenic | 35.0% | |
| CAACAGCCTAATAGGAAAAA+GGG | - | chr4_2:42812797-42812816 | None:intergenic | 35.0% | |
| TCAACAGCCTAATAGGAAAA+AGG | - | chr4_2:42812798-42812817 | None:intergenic | 35.0% | |
| ACTTTGTTAACTTCTGGACT+GGG | - | chr4_2:42813114-42813133 | None:intergenic | 35.0% | |
| AACTTTGTTAACTTCTGGAC+TGG | - | chr4_2:42813115-42813134 | None:intergenic | 35.0% | |
| TTTCCTTCCCTTTATCTTCT+GGG | - | chr4_2:42813161-42813180 | None:intergenic | 35.0% | |
| ATTTCCTTCCCTTTATCTTC+TGG | - | chr4_2:42813162-42813181 | None:intergenic | 35.0% | |
| ! | TTGTTGGTAAGATCTGTACT+AGG | - | chr4_2:42813213-42813232 | None:intergenic | 35.0% |
| ! | AGATAACACGCTTCAGATTT+TGG | - | chr4_2:42813369-42813388 | None:intergenic | 35.0% |
| ! | CATATCGGTTATGCTAACAT+CGG | - | chr4_2:42813531-42813550 | None:intergenic | 35.0% |
| ATGTTAGCATAACCGATATG+TGG | + | chr4_2:42813531-42813550 | Msa0600810:CDS | 35.0% | |
| CTCCAGCTGTAAATATATCA+AGG | - | chr4_2:42813687-42813706 | None:intergenic | 35.0% | |
| TATTTACAGCTGGAGTAGAA+TGG | + | chr4_2:42813692-42813711 | Msa0600810:intron | 35.0% | |
| ! | TTTTGAACCTGAAGAGAAAG+TGG | + | chr4_2:42813849-42813868 | Msa0600810:three_prime_UTR | 35.0% |
| TGTACAATTAGCCATTTGAC+TGG | - | chr4_2:42813995-42814014 | None:intergenic | 35.0% | |
| ! | TCTAGAAGTACAAAGTCACT+TGG | - | chr4_2:42814035-42814054 | None:intergenic | 35.0% |
| AAGTGACTTTGTACTTCTAG+AGG | + | chr4_2:42814034-42814053 | Msa0600810:three_prime_UTR | 35.0% | |
| !! | TATTATGGATTAGTCTCCGC+AGG | - | chr4_2:42810540-42810559 | None:intergenic | 40.0% |
| !!! | GCTGATTTTGAAGCTGATTC+AGG | + | chr4_2:42810616-42810635 | Msa0600810:five_prime_UTR | 40.0% |
| ! | TTGAAGCTGATTCAGGTGAT+AGG | + | chr4_2:42810623-42810642 | Msa0600810:five_prime_UTR | 40.0% |
| !!! | GTTGCTTTTTGTCATCCTAG+AGG | - | chr4_2:42810728-42810747 | None:intergenic | 40.0% |
| CAAACCCCTGGATCAAATAT+TGG | + | chr4_2:42810760-42810779 | Msa0600810:CDS | 40.0% | |
| AATGAGCTGTCATATCGACA+TGG | - | chr4_2:42811001-42811020 | None:intergenic | 40.0% | |
| TGTCGATATGACAGCTCATT+AGG | + | chr4_2:42811001-42811020 | Msa0600810:CDS | 40.0% | |
| GGTGGAGGTTATTTGAAAAC+GGG | - | chr4_2:42811133-42811152 | None:intergenic | 40.0% | |
| !! | CATGAAAAAAAGGTTGGTGG+AGG | - | chr4_2:42811148-42811167 | None:intergenic | 40.0% |
| AGTTGAACCAATGTTTAGGG+GGG | + | chr4_2:42811345-42811364 | Msa0600810:intron | 40.0% | |
| CATTTAACCCCCCTAAACAT+TGG | - | chr4_2:42811355-42811374 | None:intergenic | 40.0% | |
| CAATGTTTAGGGGGGTTAAA+TGG | + | chr4_2:42811353-42811372 | Msa0600810:intron | 40.0% | |
| TCCGAAATGCGTGAAAGTAA+TGG | + | chr4_2:42811399-42811418 | Msa0600810:intron | 40.0% | |
| CCCATTACTTTCACGCATTT+CGG | - | chr4_2:42811403-42811422 | None:intergenic | 40.0% | |
| CCGAAATGCGTGAAAGTAAT+GGG | + | chr4_2:42811400-42811419 | Msa0600810:intron | 40.0% | |
| CGAAATGCGTGAAAGTAATG+GGG | + | chr4_2:42811401-42811420 | Msa0600810:intron | 40.0% | |
| GAAATGCGTGAAAGTAATGG+GGG | + | chr4_2:42811402-42811421 | Msa0600810:intron | 40.0% | |
| TAATGCTGCTGACACATTAG+AGG | + | chr4_2:42811586-42811605 | Msa0600810:CDS | 40.0% | |
| TGAGCAAGGAATCTTTAGAC+AGG | - | chr4_2:42811624-42811643 | None:intergenic | 40.0% | |
| ! | CATGAAGCTTTTGTGTCTAC+AGG | + | chr4_2:42811666-42811685 | Msa0600810:intron | 40.0% |
| AGCTCAAGAACAGAATTCAG+TGG | + | chr4_2:42811752-42811771 | Msa0600810:CDS | 40.0% | |
| AGAACAGAATTCAGTGGAAG+TGG | + | chr4_2:42811758-42811777 | Msa0600810:intron | 40.0% | |
| GAACAGAATTCAGTGGAAGT+GGG | + | chr4_2:42811759-42811778 | Msa0600810:intron | 40.0% | |
| ! | TCCTTTGATAATTGACCAGG+GGG | + | chr4_2:42811849-42811868 | Msa0600810:intron | 40.0% |
| CATAGATAGGGAAACTAACC+TGG | - | chr4_2:42812542-42812561 | None:intergenic | 40.0% | |
| GGGATAATCAACAGCCTAAT+AGG | - | chr4_2:42812805-42812824 | None:intergenic | 40.0% | |
| ATTATCCCCAGAGAAGATAC+AGG | + | chr4_2:42812817-42812836 | Msa0600810:CDS | 40.0% | |
| ACTATCCTGTATCTTCTCTG+GGG | - | chr4_2:42812825-42812844 | None:intergenic | 40.0% | |
| GACTATCCTGTATCTTCTCT+GGG | - | chr4_2:42812826-42812845 | None:intergenic | 40.0% | |
| ! | ATAGTCCTGAGAAGCACAAT+GGG | + | chr4_2:42812840-42812859 | Msa0600810:CDS | 40.0% |
| GGGTCGTTTAGCTATTACAA+TGG | + | chr4_2:42812930-42812949 | Msa0600810:intron | 40.0% | |
| TCAAGCATCATCGCTTCATA+TGG | - | chr4_2:42812973-42812992 | None:intergenic | 40.0% | |
| GACTACAATGGCAGTGAAAA+GGG | - | chr4_2:42813035-42813054 | None:intergenic | 40.0% | |
| TGACTACAATGGCAGTGAAA+AGG | - | chr4_2:42813036-42813055 | None:intergenic | 40.0% | |
| TAACAAGGATCCATCAACTG+TGG | + | chr4_2:42813134-42813153 | Msa0600810:CDS | 40.0% | |
| ! | ATAGAAGTGCAGAGACAAGA+TGG | + | chr4_2:42813180-42813199 | Msa0600810:CDS | 40.0% |
| ATGCTTACAGCAACATCTGA+AGG | - | chr4_2:42813270-42813289 | None:intergenic | 40.0% | |
| AACAAATATCCCACAGACTG+AGG | - | chr4_2:42813295-42813314 | None:intergenic | 40.0% | |
| !! | CTTCAGATTTTGGTACTCTG+TGG | - | chr4_2:42813359-42813378 | None:intergenic | 40.0% |
| ACGTTCTGTTCTCCACATAT+CGG | - | chr4_2:42813546-42813565 | None:intergenic | 40.0% | |
| AACAAACACGCCAAAAGAGA+AGG | + | chr4_2:42813629-42813648 | Msa0600810:intron | 40.0% | |
| ACAAACACGCCAAAAGAGAA+GGG | + | chr4_2:42813630-42813649 | Msa0600810:intron | 40.0% | |
| TGAAGTAGAATTTCGCTCTC+AGG | + | chr4_2:42814177-42814196 | Msa0600810:three_prime_UTR | 40.0% | |
| AGGCGTCTGAACAGAACTAT+TGG | - | chr4_2:42810674-42810693 | None:intergenic | 45.0% | |
| !! | ATTTTGGCAGGTTCTCCTTC+AGG | + | chr4_2:42810953-42810972 | Msa0600810:intron | 45.0% |
| GGGGTGAGATTATTTCCTGA+AGG | - | chr4_2:42810971-42810990 | None:intergenic | 45.0% | |
| ACTTAAACCAGAGTTGAGGG+AGG | - | chr4_2:42811187-42811206 | None:intergenic | 45.0% | |
| GGGGGTTAAATGGCTAAAAC+AGG | + | chr4_2:42811363-42811382 | Msa0600810:intron | 45.0% | |
| TGTGTCTACAGGTGCAAAAG+AGG | + | chr4_2:42811677-42811696 | Msa0600810:intron | 45.0% | |
| GGCTGGATGTTTCAAAACCA+GGG | + | chr4_2:42811870-42811889 | Msa0600810:CDS | 45.0% | |
| GCTGGATGTTTCAAAACCAG+GGG | + | chr4_2:42811871-42811890 | Msa0600810:CDS | 45.0% | |
| GCCGGTTGGATGAACAAATA+AGG | + | chr4_2:42812218-42812237 | Msa0600810:CDS | 45.0% | |
| GGGAGATGCAAGAAAGACTA+CGG | + | chr4_2:42812336-42812355 | Msa0600810:intron | 45.0% | |
| ACTTCCAAAGTGGTACCATG+TGG | - | chr4_2:42812691-42812710 | None:intergenic | 45.0% | |
| AGGATCAGGTACTTCCAAAG+TGG | - | chr4_2:42812701-42812720 | None:intergenic | 45.0% | |
| GGACTATCCTGTATCTTCTC+TGG | - | chr4_2:42812827-42812846 | None:intergenic | 45.0% | |
| ! | GATAGTCCTGAGAAGCACAA+TGG | + | chr4_2:42812839-42812858 | Msa0600810:CDS | 45.0% |
| GAGAAGTTTGAGGAGATCCA+CGG | + | chr4_2:42813063-42813082 | Msa0600810:CDS | 45.0% | |
| ! | TTCTGGACTGGGTGGAAATT+TGG | - | chr4_2:42813103-42813122 | None:intergenic | 45.0% |
| ! | TTGTTAACTTCTGGACTGGG+TGG | - | chr4_2:42813111-42813130 | None:intergenic | 45.0% |
| ACTGTGGTCCCAGAAGATAA+AGG | + | chr4_2:42813150-42813169 | Msa0600810:CDS | 45.0% | |
| CTGTGGTCCCAGAAGATAAA+GGG | + | chr4_2:42813151-42813170 | Msa0600810:CDS | 45.0% | |
| TGCAGAGACAAGATGGTGAA+GGG | + | chr4_2:42813187-42813206 | Msa0600810:CDS | 45.0% | |
| ACTCACGAAGTCGTGATTGT+TGG | - | chr4_2:42813229-42813248 | None:intergenic | 45.0% | |
| AACAATCACGACTTCGTGAG+TGG | + | chr4_2:42813228-42813247 | Msa0600810:CDS | 45.0% | |
| ACAATCACGACTTCGTGAGT+GGG | + | chr4_2:42813229-42813248 | Msa0600810:CDS | 45.0% | |
| TAAGCATCACCTCAGTCTGT+GGG | + | chr4_2:42813283-42813302 | Msa0600810:intron | 45.0% | |
| ! | TGCAGAGTGATGCTGATTAC+TGG | + | chr4_2:42813492-42813511 | Msa0600810:intron | 45.0% |
| CAAACACGCCAAAAGAGAAG+GGG | + | chr4_2:42813631-42813650 | Msa0600810:intron | 45.0% | |
| ! | CTTCCAAACCCCTTCTCTTT+TGG | - | chr4_2:42813642-42813661 | None:intergenic | 45.0% |
| TGAGGCTTCATCCTACAGTA+GGG | - | chr4_2:42813819-42813838 | None:intergenic | 45.0% | |
| TTGAGGCTTCATCCTACAGT+AGG | - | chr4_2:42813820-42813839 | None:intergenic | 45.0% | |
| CTGTAGGATGAAGCCTCAAA+AGG | + | chr4_2:42813821-42813840 | Msa0600810:exon | 45.0% | |
| ! | AAGAACGCCACTTTCTCTTC+AGG | - | chr4_2:42813859-42813878 | None:intergenic | 45.0% |
| GGATGTCATAGGTTCTCAGT+TGG | - | chr4_2:42813885-42813904 | None:intergenic | 45.0% | |
| TCATCAAGAAGCTTGTCCTG+AGG | + | chr4_2:42813959-42813978 | Msa0600810:three_prime_UTR | 45.0% | |
| GAGTTGAATGGCCAGTCAAA+TGG | + | chr4_2:42813981-42814000 | Msa0600810:three_prime_UTR | 45.0% | |
| TCAGGTGATAGGATGACTCC+TGG | + | chr4_2:42810634-42810653 | Msa0600810:exon | 50.0% | |
| ! | AGAACTATTGGCTGCTGCAG+TGG | - | chr4_2:42810662-42810681 | None:intergenic | 50.0% |
| TCTGTTCAGACGCCTGTATC+TGG | + | chr4_2:42810679-42810698 | Msa0600810:CDS | 50.0% | |
| TCAGACGCCTGTATCTGGAA+AGG | + | chr4_2:42810684-42810703 | Msa0600810:CDS | 50.0% | |
| GGAAGGGAGGAAAATCCTCT+AGG | + | chr4_2:42810710-42810729 | Msa0600810:CDS | 50.0% | |
| AGAACTGGAACTCAAACCCC+TGG | + | chr4_2:42810748-42810767 | Msa0600810:CDS | 50.0% | |
| GGAAATAATCTCACCCCTGC+TGG | + | chr4_2:42810974-42810993 | Msa0600810:CDS | 50.0% | |
| ATATCGACATGGACCAGCAG+GGG | - | chr4_2:42810990-42811009 | None:intergenic | 50.0% | |
| CATATCGACATGGACCAGCA+GGG | - | chr4_2:42810991-42811010 | None:intergenic | 50.0% | |
| TCATATCGACATGGACCAGC+AGG | - | chr4_2:42810992-42811011 | None:intergenic | 50.0% | |
| CACTTAACCTCCCTCAACTC+TGG | + | chr4_2:42811177-42811196 | Msa0600810:intron | 50.0% | |
| GTCTACAGGTGCAAAAGAGG+AGG | + | chr4_2:42811680-42811699 | Msa0600810:intron | 50.0% | |
| GCCCCCTGGTCAATTATCAA+AGG | - | chr4_2:42811853-42811872 | None:intergenic | 50.0% | |
| ! | TTGATAATTGACCAGGGGGC+TGG | + | chr4_2:42811853-42811872 | Msa0600810:intron | 50.0% |
| !!! | TTTTGAAACATCCAGCCCCC+TGG | - | chr4_2:42811867-42811886 | None:intergenic | 50.0% |
| GGGCTGGATGTTTCAAAACC+AGG | + | chr4_2:42811869-42811888 | Msa0600810:CDS | 50.0% | |
| GGATGTTTCAAAACCAGGGG+AGG | + | chr4_2:42811874-42811893 | Msa0600810:CDS | 50.0% | |
| AACAATTGAGGAACGCCGGT+TGG | + | chr4_2:42812204-42812223 | Msa0600810:CDS | 50.0% | |
| AAAGAACTTGCCCTGCTTCC+AGG | + | chr4_2:42812521-42812540 | Msa0600810:CDS | 50.0% | |
| GGGAAACTAACCTGGAAGCA+GGG | - | chr4_2:42812534-42812553 | None:intergenic | 50.0% | |
| AGGGAAACTAACCTGGAAGC+AGG | - | chr4_2:42812535-42812554 | None:intergenic | 50.0% | |
| AGCTCCACATGGTACCACTT+TGG | + | chr4_2:42812684-42812703 | Msa0600810:CDS | 50.0% | |
| !! | GGAAGTACCTGATCCTGATG+AGG | + | chr4_2:42812705-42812724 | Msa0600810:CDS | 50.0% |
| TGGATGCAACATCAACACCG+TGG | - | chr4_2:42813083-42813102 | None:intergenic | 50.0% | |
| !! | TCTTCTGGGACCACAGTTGA+TGG | - | chr4_2:42813147-42813166 | None:intergenic | 50.0% |
| GGTCCCAGAAGATAAAGGGA+AGG | + | chr4_2:42813155-42813174 | Msa0600810:CDS | 50.0% | |
| GTGCAGAGACAAGATGGTGA+AGG | + | chr4_2:42813186-42813205 | Msa0600810:CDS | 50.0% | |
| GTAAGCATCACCTCAGTCTG+TGG | + | chr4_2:42813282-42813301 | Msa0600810:intron | 50.0% | |
| ! | GGAGACTAAGGTGTCTAGAG+AGG | - | chr4_2:42813571-42813590 | None:intergenic | 50.0% |
| ACGCCAAAAGAGAAGGGGTT+TGG | + | chr4_2:42813636-42813655 | Msa0600810:intron | 50.0% | |
| ACAGTAGGGTTGGATGCAGA+AGG | - | chr4_2:42813805-42813824 | None:intergenic | 50.0% | |
| TCTGCATCCAACCCTACTGT+AGG | + | chr4_2:42813805-42813824 | Msa0600810:CDS | 50.0% | |
| GCTTCATCCTACAGTAGGGT+TGG | - | chr4_2:42813815-42813834 | None:intergenic | 50.0% | |
| AACCTTCAATCCAACCTCGC+AGG | - | chr4_2:42813915-42813934 | None:intergenic | 50.0% | |
| GCTTGTCCTGAGGAGTTGAA+TGG | + | chr4_2:42813969-42813988 | Msa0600810:three_prime_UTR | 50.0% | |
| GCGCGACGTGTATGTTTGAA+AGG | + | chr4_2:42814126-42814145 | Msa0600810:three_prime_UTR | 50.0% | |
| GACGCCTGTATCTGGAAAGG+CGG | + | chr4_2:42810687-42810706 | Msa0600810:CDS | 55.0% | |
| ACGCCTGTATCTGGAAAGGC+GGG | + | chr4_2:42810688-42810707 | Msa0600810:CDS | 55.0% | |
| TTCCCCGCCTTTCCAGATAC+AGG | - | chr4_2:42810694-42810713 | None:intergenic | 55.0% | |
| TGTATCTGGAAAGGCGGGGA+AGG | + | chr4_2:42810693-42810712 | Msa0600810:CDS | 55.0% | |
| GTATCTGGAAAGGCGGGGAA+GGG | + | chr4_2:42810694-42810713 | Msa0600810:CDS | 55.0% | |
| AAACTATCATCGGCCTCCCC+TGG | - | chr4_2:42811890-42811909 | None:intergenic | 55.0% | |
| TTGGGCCCATTGTGCTTCTC+AGG | - | chr4_2:42812848-42812867 | None:intergenic | 55.0% | |
| CAGGTCTGGGTGGATGTCAT+AGG | - | chr4_2:42813896-42813915 | None:intergenic | 55.0% | |
| CAATCCAACCTCGCAGGTCT+GGG | - | chr4_2:42813909-42813928 | None:intergenic | 55.0% | |
| TCAATCCAACCTCGCAGGTC+TGG | - | chr4_2:42813910-42813929 | None:intergenic | 55.0% | |
| GACCTGCGAGGTTGGATTGA+AGG | + | chr4_2:42813910-42813929 | Msa0600810:three_prime_UTR | 55.0% | |
| ! | GACTGGCCATTCAACTCCTC+AGG | - | chr4_2:42813978-42813997 | None:intergenic | 55.0% |
| TAGTCTCCGCAGGTGCTCGT+GGG | - | chr4_2:42810530-42810549 | None:intergenic | 60.0% | |
| TTAGTCTCCGCAGGTGCTCG+TGG | - | chr4_2:42810531-42810550 | None:intergenic | 60.0% | |
| TTGGCTGCTGCAGTGGATCC+AGG | - | chr4_2:42810655-42810674 | None:intergenic | 60.0% | |
| CGCCTGTATCTGGAAAGGCG+GGG | + | chr4_2:42810689-42810708 | Msa0600810:CDS | 60.0% | |
| TTCGCTCTCAGGCAAAGCGC+TGG | + | chr4_2:42814188-42814207 | Msa0600810:three_prime_UTR | 60.0% | |
| AGGTGCTCGTGGGGATACCG+TGG | - | chr4_2:42810520-42810539 | None:intergenic | 65.0% | |
| GGTATCCCCACGAGCACCTG+CGG | + | chr4_2:42810521-42810540 | Msa0600810:five_prime_UTR | 65.0% | |
| AGTCTCCGCAGGTGCTCGTG+GGG | - | chr4_2:42810529-42810548 | None:intergenic | 65.0% | |
| TCTGGAAAGGCGGGGAAGGG+AGG | + | chr4_2:42810697-42810716 | Msa0600810:CDS | 65.0% | |
| GACATCCACCCAGACCTGCG+AGG | + | chr4_2:42813898-42813917 | Msa0600810:three_prime_UTR | 65.0% | |
| TCCACCCAGACCTGCGAGGT+TGG | + | chr4_2:42813902-42813921 | Msa0600810:three_prime_UTR | 65.0% | |
| TCCAACCTCGCAGGTCTGGG+TGG | - | chr4_2:42813906-42813925 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 42810491 | 42814285 | 42810491 | ID=Msa0600810;Name=Msa0600810 |
| chr4_2 | mRNA | 42810491 | 42814285 | 42810491 | ID=Msa0600810-mRNA-1;Parent=Msa0600810;Name=Msa0600810-mRNA-1;_AED=0.11;_eAED=0.11;_QI=155|1|1|1|1|1|13|454|382 |
| chr4_2 | exon | 42810491 | 42810781 | 42810491 | ID=Msa0600810-mRNA-1:exon:9318;Parent=Msa0600810-mRNA-1 |
| chr4_2 | exon | 42810963 | 42811022 | 42810963 | ID=Msa0600810-mRNA-1:exon:9319;Parent=Msa0600810-mRNA-1 |
| chr4_2 | exon | 42811522 | 42811607 | 42811522 | ID=Msa0600810-mRNA-1:exon:9320;Parent=Msa0600810-mRNA-1 |
| chr4_2 | exon | 42811688 | 42811776 | 42811688 | ID=Msa0600810-mRNA-1:exon:9321;Parent=Msa0600810-mRNA-1 |
| chr4_2 | exon | 42811868 | 42811922 | 42811868 | ID=Msa0600810-mRNA-1:exon:9322;Parent=Msa0600810-mRNA-1 |
| chr4_2 | exon | 42812187 | 42812239 | 42812187 | ID=Msa0600810-mRNA-1:exon:9323;Parent=Msa0600810-mRNA-1 |
| chr4_2 | exon | 42812337 | 42812387 | 42812337 | ID=Msa0600810-mRNA-1:exon:9324;Parent=Msa0600810-mRNA-1 |
| chr4_2 | exon | 42812494 | 42812542 | 42812494 | ID=Msa0600810-mRNA-1:exon:9325;Parent=Msa0600810-mRNA-1 |
| chr4_2 | exon | 42812661 | 42812726 | 42812661 | ID=Msa0600810-mRNA-1:exon:9326;Parent=Msa0600810-mRNA-1 |
| chr4_2 | exon | 42812810 | 42812886 | 42812810 | ID=Msa0600810-mRNA-1:exon:9327;Parent=Msa0600810-mRNA-1 |
| chr4_2 | exon | 42813053 | 42813281 | 42813053 | ID=Msa0600810-mRNA-1:exon:9328;Parent=Msa0600810-mRNA-1 |
| chr4_2 | exon | 42813497 | 42813563 | 42813497 | ID=Msa0600810-mRNA-1:exon:9329;Parent=Msa0600810-mRNA-1 |
| chr4_2 | exon | 42813701 | 42814285 | 42813701 | ID=Msa0600810-mRNA-1:exon:9330;Parent=Msa0600810-mRNA-1 |
| chr4_2 | five_prime_UTR | 42810491 | 42810645 | 42810491 | ID=Msa0600810-mRNA-1:five_prime_utr;Parent=Msa0600810-mRNA-1 |
| chr4_2 | CDS | 42810646 | 42810781 | 42810646 | ID=Msa0600810-mRNA-1:cds;Parent=Msa0600810-mRNA-1 |
| chr4_2 | CDS | 42810963 | 42811022 | 42810963 | ID=Msa0600810-mRNA-1:cds;Parent=Msa0600810-mRNA-1 |
| chr4_2 | CDS | 42811522 | 42811607 | 42811522 | ID=Msa0600810-mRNA-1:cds;Parent=Msa0600810-mRNA-1 |
| chr4_2 | CDS | 42811688 | 42811776 | 42811688 | ID=Msa0600810-mRNA-1:cds;Parent=Msa0600810-mRNA-1 |
| chr4_2 | CDS | 42811868 | 42811922 | 42811868 | ID=Msa0600810-mRNA-1:cds;Parent=Msa0600810-mRNA-1 |
| chr4_2 | CDS | 42812187 | 42812239 | 42812187 | ID=Msa0600810-mRNA-1:cds;Parent=Msa0600810-mRNA-1 |
| chr4_2 | CDS | 42812337 | 42812387 | 42812337 | ID=Msa0600810-mRNA-1:cds;Parent=Msa0600810-mRNA-1 |
| chr4_2 | CDS | 42812494 | 42812542 | 42812494 | ID=Msa0600810-mRNA-1:cds;Parent=Msa0600810-mRNA-1 |
| chr4_2 | CDS | 42812661 | 42812726 | 42812661 | ID=Msa0600810-mRNA-1:cds;Parent=Msa0600810-mRNA-1 |
| chr4_2 | CDS | 42812810 | 42812886 | 42812810 | ID=Msa0600810-mRNA-1:cds;Parent=Msa0600810-mRNA-1 |
| chr4_2 | CDS | 42813053 | 42813281 | 42813053 | ID=Msa0600810-mRNA-1:cds;Parent=Msa0600810-mRNA-1 |
| chr4_2 | CDS | 42813497 | 42813563 | 42813497 | ID=Msa0600810-mRNA-1:cds;Parent=Msa0600810-mRNA-1 |
| chr4_2 | CDS | 42813701 | 42813831 | 42813701 | ID=Msa0600810-mRNA-1:cds;Parent=Msa0600810-mRNA-1 |
| chr4_2 | three_prime_UTR | 42813832 | 42814285 | 42813832 | ID=Msa0600810-mRNA-1:three_prime_utr;Parent=Msa0600810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
