Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605050 | XP_024637186.1 | 82.738 | 336 | 42 | 6 | 10 | 331 | 1 | 334 | 0.0 | 537 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605050 | sp|Q8RY18|TRF1A_ARATH | 37.879 | 132 | 80 | 1 | 133 | 262 | 175 | 306 | 7.97e-19 | 91.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605050 | A0A396I6R9 | 82.738 | 336 | 42 | 6 | 10 | 331 | 1 | 334 | 0.0 | 537 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0605050 | Msa0646130 | 0.810375 | 1.189374e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605050 | MtrunA17_Chr4g0035371 | 82.738 | 336 | 42 | 6 | 10 | 331 | 1 | 334 | 0.0 | 537 |
| Msa0605050 | MtrunA17_Chr8g0380881 | 58.447 | 219 | 75 | 4 | 127 | 331 | 6 | 222 | 4.12e-71 | 229 |
| Msa0605050 | MtrunA17_Chr8g0380881 | 46.377 | 138 | 56 | 5 | 22 | 147 | 330 | 461 | 8.87e-24 | 102 |
| Msa0605050 | MtrunA17_Chr8g0380871 | 55.634 | 142 | 37 | 5 | 220 | 337 | 1 | 140 | 9.23e-37 | 130 |
| Msa0605050 | MtrunA17_Chr1g0186411 | 25.939 | 293 | 192 | 9 | 27 | 300 | 46 | 332 | 1.74e-19 | 90.1 |
| Msa0605050 | MtrunA17_Chr1g0186421 | 26.950 | 282 | 180 | 9 | 26 | 286 | 32 | 308 | 1.96e-19 | 88.6 |
| Msa0605050 | MtrunA17_Chr1g0168221 | 34.815 | 135 | 86 | 1 | 134 | 266 | 171 | 305 | 4.29e-19 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605050 | AT5G43560.2 | 37.879 | 132 | 80 | 1 | 133 | 262 | 175 | 306 | 8.10e-20 | 91.7 |
| Msa0605050 | AT5G43560.1 | 37.879 | 132 | 80 | 1 | 133 | 262 | 175 | 306 | 8.10e-20 | 91.7 |
| Msa0605050 | AT5G52330.4 | 24.302 | 358 | 203 | 9 | 27 | 320 | 5 | 358 | 9.66e-20 | 90.1 |
| Msa0605050 | AT5G52330.3 | 24.302 | 358 | 203 | 9 | 27 | 320 | 5 | 358 | 9.66e-20 | 90.1 |
| Msa0605050 | AT5G52330.1 | 24.302 | 358 | 203 | 9 | 27 | 320 | 5 | 358 | 9.66e-20 | 90.1 |
| Msa0605050 | AT5G52330.2 | 25.957 | 235 | 124 | 4 | 134 | 320 | 75 | 307 | 1.79e-16 | 80.1 |
| Msa0605050 | AT1G04300.5 | 33.077 | 130 | 85 | 1 | 133 | 260 | 144 | 273 | 6.45e-16 | 79.7 |
| Msa0605050 | AT1G04300.4 | 33.077 | 130 | 85 | 1 | 133 | 260 | 155 | 284 | 8.27e-16 | 79.3 |
| Msa0605050 | AT1G04300.1 | 33.077 | 130 | 85 | 1 | 133 | 260 | 174 | 303 | 9.03e-16 | 79.3 |
| Msa0605050 | AT1G04300.3 | 33.077 | 130 | 85 | 1 | 133 | 260 | 182 | 311 | 9.13e-16 | 79.3 |
| Msa0605050 | AT1G04300.2 | 33.077 | 130 | 85 | 1 | 133 | 260 | 97 | 226 | 9.40e-16 | 79.3 |
Find 58 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTGCCATCCCTACTTAAA+AGG | 0.210639 | 4_2:+50809125 | Msa0605050:CDS |
| AAAACTAAAGTCATTGAAAT+TGG | 0.226783 | 4_2:+50807025 | Msa0605050:CDS |
| ATTGAAATTGGAGGATTTAA+AGG | 0.238197 | 4_2:+50807037 | Msa0605050:CDS |
| GTTCAATGAACAGAATGATT+TGG | 0.268943 | 4_2:+50808924 | Msa0605050:CDS |
| GGAAAAGGAAGATGTAATTA+AGG | 0.284760 | 4_2:+50808946 | Msa0605050:CDS |
| ACTTAATTTCATTGTGAATC+AGG | 0.285562 | 4_2:-50807731 | None:intergenic |
| GGGACAATGCTTTCATATAT+AGG | 0.287041 | 4_2:-50809169 | None:intergenic |
| CTCTCTCAGGTAGGGATATT+CGG | 0.292534 | 4_2:+50806891 | Msa0605050:intron |
| TTGTTCTTGACTATCTATTC+AGG | 0.306654 | 4_2:+50809221 | Msa0605050:CDS |
| GTATCGAGCTGAGCTTCTTT+TGG | 0.317600 | 4_2:+50807641 | Msa0605050:CDS |
| TTCAATGAACAGAATGATTT+GGG | 0.320198 | 4_2:+50808925 | Msa0605050:CDS |
| GAATTGCAGATTCAGATTCT+TGG | 0.343032 | 4_2:+50807459 | Msa0605050:CDS |
| GAAAGCATTGTCCCACAGTT+TGG | 0.376185 | 4_2:+50809178 | Msa0605050:CDS |
| TCATCTGGATAATTCGGCTT+TGG | 0.377585 | 4_2:-50806992 | None:intergenic |
| AATTGCAGATTCAGATTCTT+GGG | 0.385387 | 4_2:+50807460 | Msa0605050:CDS |
| TCATCGTCATCTGGATAATT+CGG | 0.387151 | 4_2:-50806998 | None:intergenic |
| AATTTCACAGCTGTTCATAC+TGG | 0.387505 | 4_2:+50807135 | Msa0605050:CDS |
| CGATGGTTATGAATCAATAA+AGG | 0.388786 | 4_2:+50809036 | Msa0605050:CDS |
| TTGAAATTGGAGGATTTAAA+GGG | 0.394663 | 4_2:+50807038 | Msa0605050:CDS |
| TATGAATTTGATTGTGAAGA+AGG | 0.409577 | 4_2:+50807405 | Msa0605050:CDS |
| GAACAGAATGATTTGGGAAA+AGG | 0.412113 | 4_2:+50808931 | Msa0605050:CDS |
| CTCTATTCTATTCTTACGAT+CGG | 0.438697 | 4_2:-50806600 | None:intergenic |
| TACCGAAACGTTTAGTTAGT+AGG | 0.465892 | 4_2:-50807248 | None:intergenic |
| TGTACTTTCATGATAGAAAG+TGG | 0.473343 | 4_2:+50808896 | Msa0605050:CDS |
| TCACTTTGTGATGGTTATAC+CGG | 0.485058 | 4_2:+50807381 | Msa0605050:CDS |
| GTGACTCAATCGAACTGAAA+AGG | 0.486271 | 4_2:+50809742 | Msa0605050:exon |
| CAGCTCGATACTTCTTTACA+AGG | 0.495077 | 4_2:-50807629 | None:intergenic |
| AAACTAGTATTAGGTTTAGG+TGG | 0.496885 | 4_2:-50806566 | None:intergenic |
| GTTTAGTTAGTAGGTAGTCA+TGG | 0.496896 | 4_2:-50807239 | None:intergenic |
| ACTTCTTTACAAGGAGAGGC+TGG | 0.502762 | 4_2:-50807620 | None:intergenic |
| ACTAAAGTCATTGAAATTGG+AGG | 0.506952 | 4_2:+50807028 | Msa0605050:CDS |
| TACCTACTAACTAAACGTTT+CGG | 0.515447 | 4_2:+50807246 | Msa0605050:CDS |
| TTTAGTTAGTAGGTAGTCAT+GGG | 0.517016 | 4_2:-50807238 | None:intergenic |
| TGTGACATCTCCTTTGCTAA+TGG | 0.517589 | 4_2:+50809003 | Msa0605050:CDS |
| TGTGCCATCCCTACTTAAAA+GGG | 0.523105 | 4_2:+50809126 | Msa0605050:CDS |
| TTCACAATCAAATTCATAGC+CGG | 0.524784 | 4_2:-50807400 | None:intergenic |
| CTATTCCACTCACTTTGTGA+TGG | 0.531983 | 4_2:+50807372 | Msa0605050:CDS |
| AGATGTAATTAAGGAAGCCT+TGG | 0.532966 | 4_2:+50808955 | Msa0605050:CDS |
| TTGTCATATTTGAGGACGAA+TGG | 0.538916 | 4_2:+50809080 | Msa0605050:intron |
| TGATTCACAATGAAATTAAG+TGG | 0.540946 | 4_2:+50807733 | Msa0605050:CDS |
| TGAAAGAAAGATGAAGGTGA+AGG | 0.552232 | 4_2:+50806787 | Msa0605050:CDS |
| CGATACTTCTTTACAAGGAG+AGG | 0.559558 | 4_2:-50807624 | None:intergenic |
| AAGAAAGATGAAGGTGAAGG+AGG | 0.565852 | 4_2:+50806790 | Msa0605050:CDS |
| ACAATGAAATTAAGTGGCCA+AGG | 0.567859 | 4_2:+50807739 | Msa0605050:CDS |
| AATAAAGGCTAACAATACTA+CGG | 0.575555 | 4_2:+50809051 | Msa0605050:CDS |
| TATAATATCTCCATTAGCAA+AGG | 0.582185 | 4_2:-50809013 | None:intergenic |
| TGAGGACGAATGGTTTGAGT+TGG | 0.583268 | 4_2:+50809090 | Msa0605050:intron |
| ACAGTTTGGTTGCATGATTG+TGG | 0.586729 | 4_2:+50809192 | Msa0605050:CDS |
| GAATAGAATAGAGAGAGAAG+CGG | 0.587370 | 4_2:+50806610 | Msa0605050:five_prime_UTR |
| GTGCTCAGTGCATAAAACAT+TGG | 0.590886 | 4_2:-50807198 | None:intergenic |
| CGGCGACAACGCAGAAACAC+AGG | 0.601453 | 4_2:+50806630 | Msa0605050:five_prime_UTR |
| CAATCATGCAACCAAACTGT+GGG | 0.620049 | 4_2:-50809189 | None:intergenic |
| ACAATCATGCAACCAAACTG+TGG | 0.621941 | 4_2:-50809190 | None:intergenic |
| TATAACCATCACAAAGTGAG+TGG | 0.636863 | 4_2:-50807377 | None:intergenic |
| TTAGTTAGTAGGTAGTCATG+GGG | 0.642431 | 4_2:-50807237 | None:intergenic |
| CTAATGGAGATATTATACGA+TGG | 0.661760 | 4_2:+50809019 | Msa0605050:CDS |
| TAGTTAGTAGGTAGTCATGG+GGG | 0.756976 | 4_2:-50807236 | None:intergenic |
| AGATAAATCAAATTTCAACG+AGG | 0.780113 | 4_2:-50807160 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGCTTATAATTAATTATA+TGG | - | chr4_2:50807536-50807555 | None:intergenic | 10.0% |
| !! | ATATAATTAATTATAAGCAT+TGG | + | chr4_2:50807535-50807554 | Msa0605050:intron | 10.0% |
| !! | TATAATTAATTATAAGCATT+GGG | + | chr4_2:50807536-50807555 | Msa0605050:intron | 10.0% |
| !!! | TATTTATTTTTGAAGAAAAA+TGG | + | chr4_2:50809418-50809437 | Msa0605050:intron | 10.0% |
| !!! | ATTTTTTTTTACTTTTTTCT+CGG | - | chr4_2:50809771-50809790 | None:intergenic | 10.0% |
| !! | AGAAAAAAGTAAAAAAAAAT+GGG | + | chr4_2:50809771-50809790 | Msa0605050:three_prime_UTR | 10.0% |
| !! | AAAAAAGTAAAAAAATACCT+TGG | - | chr4_2:50807759-50807778 | None:intergenic | 15.0% |
| !! | ATTTAATTAATAGATGTGTA+TGG | + | chr4_2:50807861-50807880 | Msa0605050:intron | 15.0% |
| !!! | TGAATTTTAATAATATATGG+TGG | + | chr4_2:50807894-50807913 | Msa0605050:intron | 15.0% |
| !! | CAAAAAGATATAACAAATTA+TGG | + | chr4_2:50808206-50808225 | Msa0605050:intron | 15.0% |
| !!! | ATTAATTATTCCTATTTCTA+AGG | - | chr4_2:50808606-50808625 | None:intergenic | 15.0% |
| !! | AAATAGGAATAATTAATTAC+AGG | + | chr4_2:50808609-50808628 | Msa0605050:intron | 15.0% |
| !! | AATGTGATATTCTTAATTTA+TGG | + | chr4_2:50808756-50808775 | Msa0605050:intron | 15.0% |
| !! | ATGTGATATTCTTAATTTAT+GGG | + | chr4_2:50808757-50808776 | Msa0605050:intron | 15.0% |
| !! | GTTATTCAACAAAAAAAAAA+CGG | + | chr4_2:50808806-50808825 | Msa0605050:intron | 15.0% |
| !! | TTATTCAACAAAAAAAAAAC+GGG | + | chr4_2:50808807-50808826 | Msa0605050:intron | 15.0% |
| !! | GTCAATAAATAAATCATATA+TGG | - | chr4_2:50809249-50809268 | None:intergenic | 15.0% |
| !! | ATCAAATAGTTAACAAAATA+AGG | - | chr4_2:50809559-50809578 | None:intergenic | 15.0% |
| !! | GAGAAAAAAGTAAAAAAAAA+TGG | + | chr4_2:50809770-50809789 | Msa0605050:three_prime_UTR | 15.0% |
| !! | AAAAAACTAGTATTAGGTTT+AGG | - | chr4_2:50806572-50806591 | None:intergenic | 20.0% |
| !! | TTGCTAAAAAAACTAGTATT+AGG | - | chr4_2:50806578-50806597 | None:intergenic | 20.0% |
| !! | AAAACTAAAGTCATTGAAAT+TGG | + | chr4_2:50807025-50807044 | Msa0605050:CDS | 20.0% |
| !! | TATTGTTTGTGTCAATTATT+TGG | - | chr4_2:50808182-50808201 | None:intergenic | 20.0% |
| !! | AAAGATATAACAAATTATGG+TGG | + | chr4_2:50808209-50808228 | Msa0605050:intron | 20.0% |
| !!! | ATATTTTTTATGTGAACTGT+GGG | + | chr4_2:50808241-50808260 | Msa0605050:intron | 20.0% |
| !! | TAACATTGCAGTATTTATAA+GGG | - | chr4_2:50808274-50808293 | None:intergenic | 20.0% |
| !! | TTAACATTGCAGTATTTATA+AGG | - | chr4_2:50808275-50808294 | None:intergenic | 20.0% |
| !!! | TATTGATTTGAGTAACTAAA+TGG | - | chr4_2:50808491-50808510 | None:intergenic | 20.0% |
| !! | TTTGTTGAATAACAAAACAT+GGG | - | chr4_2:50808799-50808818 | None:intergenic | 20.0% |
| !!! | TTTTGTTGAATAACAAAACA+TGG | - | chr4_2:50808800-50808819 | None:intergenic | 20.0% |
| !!! | CATTTTTTTCACATTTTTCT+CGG | - | chr4_2:50809489-50809508 | None:intergenic | 20.0% |
| !! | GAGAAAAATGTGAAAAAAAT+GGG | + | chr4_2:50809488-50809507 | Msa0605050:CDS | 20.0% |
| !!! | ATTATTTATTTAATGGATGC+AGG | + | chr4_2:50809691-50809710 | Msa0605050:intron | 20.0% |
| ! | AGTGTTTATGTGTATTGTAT+TGG | + | chr4_2:50806706-50806725 | Msa0605050:intron | 25.0% |
| !!! | TGATTTTGAAAGAAAGATGA+AGG | + | chr4_2:50806781-50806800 | Msa0605050:CDS | 25.0% |
| ! | TAAGTATGAGTATCAACAAA+AGG | - | chr4_2:50806858-50806877 | None:intergenic | 25.0% |
| ! | ATTGAAATTGGAGGATTTAA+AGG | + | chr4_2:50807037-50807056 | Msa0605050:CDS | 25.0% |
| ! | TTGAAATTGGAGGATTTAAA+GGG | + | chr4_2:50807038-50807057 | Msa0605050:CDS | 25.0% |
| ! | AGATAAATCAAATTTCAACG+AGG | - | chr4_2:50807163-50807182 | None:intergenic | 25.0% |
| ! | TATGAATTTGATTGTGAAGA+AGG | + | chr4_2:50807405-50807424 | Msa0605050:CDS | 25.0% |
| ! | ACTTAATTTCATTGTGAATC+AGG | - | chr4_2:50807734-50807753 | None:intergenic | 25.0% |
| ! | TGATTCACAATGAAATTAAG+TGG | + | chr4_2:50807733-50807752 | Msa0605050:CDS | 25.0% |
| !!! | GATATTTTTTATGTGAACTG+TGG | + | chr4_2:50808240-50808259 | Msa0605050:intron | 25.0% |
| ! | AATACTGCAATGTTAAACAA+TGG | + | chr4_2:50808279-50808298 | Msa0605050:intron | 25.0% |
| ! | TTGTAAATTTCATTACTGCA+AGG | - | chr4_2:50808320-50808339 | None:intergenic | 25.0% |
| ! | GGAATAATTAATTACAGGAT+AGG | + | chr4_2:50808614-50808633 | Msa0605050:intron | 25.0% |
| !! | TTTGTATTTGATGCTTTTGT+AGG | + | chr4_2:50808703-50808722 | Msa0605050:intron | 25.0% |
| ! | TTAGCAAACAAAAAACTTGA+GGG | - | chr4_2:50808842-50808861 | None:intergenic | 25.0% |
| ! | ATTAGCAAACAAAAAACTTG+AGG | - | chr4_2:50808843-50808862 | None:intergenic | 25.0% |
| ! | TTCAATGAACAGAATGATTT+GGG | + | chr4_2:50808925-50808944 | Msa0605050:CDS | 25.0% |
| ! | TAAAAAAAATTGATGCACCA+AGG | - | chr4_2:50808975-50808994 | None:intergenic | 25.0% |
| !!! | GTGCATCAATTTTTTTTAGA+TGG | + | chr4_2:50808977-50808996 | Msa0605050:CDS | 25.0% |
| ! | TATAATATCTCCATTAGCAA+AGG | - | chr4_2:50809016-50809035 | None:intergenic | 25.0% |
| ! | AATAAAGGCTAACAATACTA+CGG | + | chr4_2:50809051-50809070 | Msa0605050:CDS | 25.0% |
| ! | AATATAAAGAAACAAGACTC+AGG | - | chr4_2:50809271-50809290 | None:intergenic | 25.0% |
| !!! | TTTTTGAAGAAAAATGGAGA+AGG | + | chr4_2:50809424-50809443 | Msa0605050:intron | 25.0% |
| ! | CGAGAAAAATGTGAAAAAAA+TGG | + | chr4_2:50809487-50809506 | Msa0605050:CDS | 25.0% |
| !!! | TGATTTTTGCTGTAAATAGA+CGG | + | chr4_2:50809529-50809548 | Msa0605050:intron | 25.0% |
| ! | TATTTGATAGAAACTGTTTG+TGG | + | chr4_2:50809571-50809590 | Msa0605050:intron | 25.0% |
| AAACTAGTATTAGGTTTAGG+TGG | - | chr4_2:50806569-50806588 | None:intergenic | 30.0% | |
| CTCTATTCTATTCTTACGAT+CGG | - | chr4_2:50806603-50806622 | None:intergenic | 30.0% | |
| GTTTATGTGTATTGTATTGG+TGG | + | chr4_2:50806709-50806728 | Msa0605050:intron | 30.0% | |
| ! | TATTGGTGGTATGAGATTAT+AGG | + | chr4_2:50806723-50806742 | Msa0605050:intron | 30.0% |
| ! | ATTGGTGGTATGAGATTATA+GGG | + | chr4_2:50806724-50806743 | Msa0605050:intron | 30.0% |
| !!! | TTATAGGGTTTTGTTTCAAC+AGG | + | chr4_2:50806739-50806758 | Msa0605050:intron | 30.0% |
| ACTAAAGTCATTGAAATTGG+AGG | + | chr4_2:50807028-50807047 | Msa0605050:CDS | 30.0% | |
| AAAGATTGATATGCCAATAC+AGG | + | chr4_2:50807112-50807131 | Msa0605050:intron | 30.0% | |
| TTTAGTTAGTAGGTAGTCAT+GGG | - | chr4_2:50807241-50807260 | None:intergenic | 30.0% | |
| TACCTACTAACTAAACGTTT+CGG | + | chr4_2:50807246-50807265 | Msa0605050:CDS | 30.0% | |
| TTCACAATCAAATTCATAGC+CGG | - | chr4_2:50807403-50807422 | None:intergenic | 30.0% | |
| AATTGCAGATTCAGATTCTT+GGG | + | chr4_2:50807460-50807479 | Msa0605050:CDS | 30.0% | |
| TCCTTATGTATGCATTATGT+TGG | + | chr4_2:50807487-50807506 | Msa0605050:intron | 30.0% | |
| ACCAACATAATGCATACATA+AGG | - | chr4_2:50807491-50807510 | None:intergenic | 30.0% | |
| TTAGCATGTCTTAGTTGATT+CGG | + | chr4_2:50807961-50807980 | Msa0605050:intron | 30.0% | |
| !!! | TTGTTTTTGAAGCAATGTCT+TGG | + | chr4_2:50807997-50808016 | Msa0605050:intron | 30.0% |
| ! | TTCATCATTTGTTAACCCAA+AGG | + | chr4_2:50808031-50808050 | Msa0605050:intron | 30.0% |
| ! | TCATCATTTGTTAACCCAAA+GGG | + | chr4_2:50808032-50808051 | Msa0605050:intron | 30.0% |
| GCATTACGAGATATTCATAA+TGG | + | chr4_2:50808054-50808073 | Msa0605050:intron | 30.0% | |
| ! | ACTGAATTTTGAACTCATGA+AGG | - | chr4_2:50808080-50808099 | None:intergenic | 30.0% |
| AAATGTTGTACAAACGTTGT+AGG | + | chr4_2:50808672-50808691 | Msa0605050:intron | 30.0% | |
| TGTACTTTCATGATAGAAAG+TGG | + | chr4_2:50808896-50808915 | Msa0605050:CDS | 30.0% | |
| GTTCAATGAACAGAATGATT+TGG | + | chr4_2:50808924-50808943 | Msa0605050:CDS | 30.0% | |
| GGAAAAGGAAGATGTAATTA+AGG | + | chr4_2:50808946-50808965 | Msa0605050:CDS | 30.0% | |
| CTAATGGAGATATTATACGA+TGG | + | chr4_2:50809019-50809038 | Msa0605050:CDS | 30.0% | |
| CGATGGTTATGAATCAATAA+AGG | + | chr4_2:50809036-50809055 | Msa0605050:CDS | 30.0% | |
| GGATAAGTTTGTCATATTTG+AGG | + | chr4_2:50809072-50809091 | Msa0605050:intron | 30.0% | |
| !! | ATCAACAACCCTTTTAAGTA+GGG | - | chr4_2:50809137-50809156 | None:intergenic | 30.0% |
| !! | TATCAACAACCCTTTTAAGT+AGG | - | chr4_2:50809138-50809157 | None:intergenic | 30.0% |
| TTGTTCTTGACTATCTATTC+AGG | + | chr4_2:50809221-50809240 | Msa0605050:CDS | 30.0% | |
| AAAAAAATGGGAGAAGCAAA+AGG | + | chr4_2:50809500-50809519 | Msa0605050:CDS | 30.0% | |
| !! | GATTTTTGCTGTAAATAGAC+GGG | + | chr4_2:50809530-50809549 | Msa0605050:intron | 30.0% |
| !! | ATTTTTGCTGTAAATAGACG+GGG | + | chr4_2:50809531-50809550 | Msa0605050:intron | 30.0% |
| AAAAAAATGGGAGAAGCAAA+AGG | + | chr4_2:50809500-50809519 | Msa0605050:CDS | 30.0% | |
| GAATAGAATAGAGAGAGAAG+CGG | + | chr4_2:50806610-50806629 | Msa0605050:five_prime_UTR | 35.0% | |
| TGAAAGAAAGATGAAGGTGA+AGG | + | chr4_2:50806787-50806806 | Msa0605050:CDS | 35.0% | |
| TCATCGTCATCTGGATAATT+CGG | - | chr4_2:50807001-50807020 | None:intergenic | 35.0% | |
| ! | GTTTTACAATCATCGTCATC+TGG | - | chr4_2:50807010-50807029 | None:intergenic | 35.0% |
| AATTTCACAGCTGTTCATAC+TGG | + | chr4_2:50807135-50807154 | Msa0605050:CDS | 35.0% | |
| TTAGTTAGTAGGTAGTCATG+GGG | - | chr4_2:50807240-50807259 | None:intergenic | 35.0% | |
| GTTTAGTTAGTAGGTAGTCA+TGG | - | chr4_2:50807242-50807261 | None:intergenic | 35.0% | |
| TACCGAAACGTTTAGTTAGT+AGG | - | chr4_2:50807251-50807270 | None:intergenic | 35.0% | |
| TACTAACTAAACGTTTCGGT+AGG | + | chr4_2:50807250-50807269 | Msa0605050:intron | 35.0% | |
| TATAACCATCACAAAGTGAG+TGG | - | chr4_2:50807380-50807399 | None:intergenic | 35.0% | |
| TCACTTTGTGATGGTTATAC+CGG | + | chr4_2:50807381-50807400 | Msa0605050:CDS | 35.0% | |
| GAATTGCAGATTCAGATTCT+TGG | + | chr4_2:50807459-50807478 | Msa0605050:CDS | 35.0% | |
| CAATCATACAATGAGTTGCA+TGG | - | chr4_2:50807574-50807593 | None:intergenic | 35.0% | |
| ACAATGAAATTAAGTGGCCA+AGG | + | chr4_2:50807739-50807758 | Msa0605050:CDS | 35.0% | |
| CAACTAAGACATGCTAAACA+TGG | - | chr4_2:50807958-50807977 | None:intergenic | 35.0% | |
| AATATCTCGTAATGCCCTTT+GGG | - | chr4_2:50808049-50808068 | None:intergenic | 35.0% | |
| ATCATCAGATTCGAATGAGA+GGG | - | chr4_2:50808116-50808135 | None:intergenic | 35.0% | |
| TATCATCAGATTCGAATGAG+AGG | - | chr4_2:50808117-50808136 | None:intergenic | 35.0% | |
| CTGCAATGTTAAACAATGGA+TGG | + | chr4_2:50808283-50808302 | Msa0605050:intron | 35.0% | |
| TTCCACAATTTGATATTCCC+GGG | - | chr4_2:50808557-50808576 | None:intergenic | 35.0% | |
| CTTCCACAATTTGATATTCC+CGG | - | chr4_2:50808558-50808577 | None:intergenic | 35.0% | |
| ! | GAACAGAATGATTTGGGAAA+AGG | + | chr4_2:50808931-50808950 | Msa0605050:CDS | 35.0% |
| AGATGTAATTAAGGAAGCCT+TGG | + | chr4_2:50808955-50808974 | Msa0605050:CDS | 35.0% | |
| TTGTCATATTTGAGGACGAA+TGG | + | chr4_2:50809080-50809099 | Msa0605050:intron | 35.0% | |
| GGGACAATGCTTTCATATAT+AGG | - | chr4_2:50809172-50809191 | None:intergenic | 35.0% | |
| ! | TGTGATACAATAGTGTTGCT+AGG | + | chr4_2:50809339-50809358 | Msa0605050:intron | 35.0% |
| ! | TGTGATACAATAGTGTTGCT+AGG | + | chr4_2:50809339-50809358 | Msa0605050:intron | 35.0% |
| AAGAAAGATGAAGGTGAAGG+AGG | + | chr4_2:50806790-50806809 | Msa0605050:CDS | 40.0% | |
| TCATCTGGATAATTCGGCTT+TGG | - | chr4_2:50806995-50807014 | None:intergenic | 40.0% | |
| CAGCTGTGAAATTCCTGTAT+TGG | - | chr4_2:50807128-50807147 | None:intergenic | 40.0% | |
| GTGCTCAGTGCATAAAACAT+TGG | - | chr4_2:50807201-50807220 | None:intergenic | 40.0% | |
| TAGTTAGTAGGTAGTCATGG+GGG | - | chr4_2:50807239-50807258 | None:intergenic | 40.0% | |
| CTATTCCACTCACTTTGTGA+TGG | + | chr4_2:50807372-50807391 | Msa0605050:CDS | 40.0% | |
| ! | AGAAGGTTTTCTTGACGATG+AGG | + | chr4_2:50807422-50807441 | Msa0605050:CDS | 40.0% |
| ! | GAAGGTTTTCTTGACGATGA+GGG | + | chr4_2:50807423-50807442 | Msa0605050:CDS | 40.0% |
| CGATACTTCTTTACAAGGAG+AGG | - | chr4_2:50807627-50807646 | None:intergenic | 40.0% | |
| CAGCTCGATACTTCTTTACA+AGG | - | chr4_2:50807632-50807651 | None:intergenic | 40.0% | |
| GAATATCTCGTAATGCCCTT+TGG | - | chr4_2:50808050-50808069 | None:intergenic | 40.0% | |
| AGAACCATTCTCATCTCAGT+GGG | - | chr4_2:50808373-50808392 | None:intergenic | 40.0% | |
| !!! | GAAGAAGAGCATACTGGTTT+TGG | - | chr4_2:50808421-50808440 | None:intergenic | 40.0% |
| TGAGTAACTAAATGGACACG+TGG | - | chr4_2:50808483-50808502 | None:intergenic | 40.0% | |
| CGGGAATATCAAATTGTGGA+AGG | + | chr4_2:50808556-50808575 | Msa0605050:intron | 40.0% | |
| AAGGACTAAGTCAATTCCAC+TGG | + | chr4_2:50808575-50808594 | Msa0605050:intron | 40.0% | |
| !! | TATTTCTAAGGAAGTGCCAG+TGG | - | chr4_2:50808594-50808613 | None:intergenic | 40.0% |
| ACTGGCACTTCCTTAGAAAT+AGG | + | chr4_2:50808593-50808612 | Msa0605050:intron | 40.0% | |
| TGTGACATCTCCTTTGCTAA+TGG | + | chr4_2:50809003-50809022 | Msa0605050:CDS | 40.0% | |
| ATGTGCCATCCCTACTTAAA+AGG | + | chr4_2:50809125-50809144 | Msa0605050:CDS | 40.0% | |
| TGTGCCATCCCTACTTAAAA+GGG | + | chr4_2:50809126-50809145 | Msa0605050:CDS | 40.0% | |
| !! | ACAACCCTTTTAAGTAGGGA+TGG | - | chr4_2:50809133-50809152 | None:intergenic | 40.0% |
| CAATCATGCAACCAAACTGT+GGG | - | chr4_2:50809192-50809211 | None:intergenic | 40.0% | |
| ACAATCATGCAACCAAACTG+TGG | - | chr4_2:50809193-50809212 | None:intergenic | 40.0% | |
| ACAGTTTGGTTGCATGATTG+TGG | + | chr4_2:50809192-50809211 | Msa0605050:CDS | 40.0% | |
| !! | CAATAGTGTTGCTAGGCTTT+TGG | + | chr4_2:50809346-50809365 | Msa0605050:intron | 40.0% |
| TAGAATATGATCAGCCTGCA+CGG | - | chr4_2:50809388-50809407 | None:intergenic | 40.0% | |
| !! | CAATAGTGTTGCTAGGCTTT+TGG | + | chr4_2:50809346-50809365 | Msa0605050:intron | 40.0% |
| TAGAATATGATCAGCCTGCA+CGG | - | chr4_2:50809388-50809407 | None:intergenic | 40.0% | |
| GTGACTCAATCGAACTGAAA+AGG | + | chr4_2:50809742-50809761 | Msa0605050:exon | 40.0% | |
| TTGTTCTCTCTCTCTCTCTC+AGG | + | chr4_2:50806878-50806897 | Msa0605050:intron | 45.0% | |
| CTCTCTCAGGTAGGGATATT+CGG | + | chr4_2:50806891-50806910 | Msa0605050:intron | 45.0% | |
| ACTTCTTTACAAGGAGAGGC+TGG | - | chr4_2:50807623-50807642 | None:intergenic | 45.0% | |
| ! | GTATCGAGCTGAGCTTCTTT+TGG | + | chr4_2:50807641-50807660 | Msa0605050:CDS | 45.0% |
| CGAGTAAGCATCTCGTCATT+AGG | + | chr4_2:50807919-50807938 | Msa0605050:intron | 45.0% | |
| ! | GGGAGAGTATGCTGAAATCA+GGG | - | chr4_2:50808140-50808159 | None:intergenic | 45.0% |
| AACCATTCTCATCTCAGTGG+GGG | - | chr4_2:50808371-50808390 | None:intergenic | 45.0% | |
| GAACCATTCTCATCTCAGTG+GGG | - | chr4_2:50808372-50808391 | None:intergenic | 45.0% | |
| GAGAACCATTCTCATCTCAG+TGG | - | chr4_2:50808374-50808393 | None:intergenic | 45.0% | |
| !!! | CTGGTTTTGGAGATGGAAGT+GGG | - | chr4_2:50808408-50808427 | None:intergenic | 45.0% |
| !!! | ACTGGTTTTGGAGATGGAAG+TGG | - | chr4_2:50808409-50808428 | None:intergenic | 45.0% |
| !!! | GAGCATACTGGTTTTGGAGA+TGG | - | chr4_2:50808415-50808434 | None:intergenic | 45.0% |
| GAGGAAAAGATTGACCCAAG+GGG | - | chr4_2:50808447-50808466 | None:intergenic | 45.0% | |
| GGAGGAAAAGATTGACCCAA+GGG | - | chr4_2:50808448-50808467 | None:intergenic | 45.0% | |
| TGGAGGAAAAGATTGACCCA+AGG | - | chr4_2:50808449-50808468 | None:intergenic | 45.0% | |
| CATCACTCTGTTGTCAAACG+CGG | + | chr4_2:50808514-50808533 | Msa0605050:intron | 45.0% | |
| CAATTTGATATTCCCGGGAG+CGG | - | chr4_2:50808552-50808571 | None:intergenic | 45.0% | |
| CTCCCGGGAATATCAAATTG+TGG | + | chr4_2:50808552-50808571 | Msa0605050:intron | 45.0% | |
| TGAGGACGAATGGTTTGAGT+TGG | + | chr4_2:50809090-50809109 | Msa0605050:intron | 45.0% | |
| !! | GAAAGCATTGTCCCACAGTT+TGG | + | chr4_2:50809178-50809197 | Msa0605050:CDS | 45.0% |
| !!! | TGATATTTTATTTATTATTA+TGG | + | chr4_2:50807800-50807819 | Msa0605050:intron | 5.0% |
| !! | ATATATTATTAAAATTCAAA+TGG | - | chr4_2:50807892-50807911 | None:intergenic | 5.0% |
| !!! | ATTTGAATTTTAATAATATA+TGG | + | chr4_2:50807891-50807910 | Msa0605050:intron | 5.0% |
| !! | TATTCTAATTATTTATTTAA+TGG | + | chr4_2:50809684-50809703 | Msa0605050:intron | 5.0% |
| TCTCTCTCTCTCTCTCAGGT+AGG | + | chr4_2:50806882-50806901 | Msa0605050:intron | 50.0% | |
| CTCTCTCTCTCTCTCAGGTA+GGG | + | chr4_2:50806883-50806902 | Msa0605050:intron | 50.0% | |
| ! | GGGGAGAGTATGCTGAAATC+AGG | - | chr4_2:50808141-50808160 | None:intergenic | 50.0% |
| ATTTCAGCATACTCTCCCCC+AGG | + | chr4_2:50808142-50808161 | Msa0605050:intron | 50.0% | |
| TGGCATTTCGAGCTCAACCT+GGG | - | chr4_2:50808162-50808181 | None:intergenic | 50.0% | |
| TTGGCATTTCGAGCTCAACC+TGG | - | chr4_2:50808163-50808182 | None:intergenic | 50.0% | |
| ACCATTCTCATCTCAGTGGG+GGG | - | chr4_2:50808370-50808389 | None:intergenic | 50.0% | |
| TTTGGAGATGGAAGTGGGAC+TGG | - | chr4_2:50808403-50808422 | None:intergenic | 50.0% | |
| ! | GGGTGTGAAGAAGAGCATAC+TGG | - | chr4_2:50808427-50808446 | None:intergenic | 50.0% |
| ATGCTCTTCTTCACACCCCT+TGG | + | chr4_2:50808429-50808448 | Msa0605050:intron | 50.0% | |
| TGCTCTTCTTCACACCCCTT+GGG | + | chr4_2:50808430-50808449 | Msa0605050:intron | 50.0% | |
| TAAATGGACACGTGGCAGCA+GGG | - | chr4_2:50808475-50808494 | None:intergenic | 50.0% | |
| TGTTATCCAGTAGACCGTGC+AGG | + | chr4_2:50809371-50809390 | Msa0605050:intron | 50.0% | |
| TGATATCCAGTAGACCGTGC+AGG | + | chr4_2:50809654-50809673 | Msa0605050:intron | 50.0% | |
| GCATTTCGAGCTCAACCTGG+GGG | - | chr4_2:50808160-50808179 | None:intergenic | 55.0% | |
| GGCATTTCGAGCTCAACCTG+GGG | - | chr4_2:50808161-50808180 | None:intergenic | 55.0% | |
| AAATGGACACGTGGCAGCAG+GGG | - | chr4_2:50808474-50808493 | None:intergenic | 55.0% | |
| CTAAATGGACACGTGGCAGC+AGG | - | chr4_2:50808476-50808495 | None:intergenic | 55.0% | |
| CGGCGACAACGCAGAAACAC+AGG | + | chr4_2:50806630-50806649 | Msa0605050:five_prime_UTR | 60.0% | |
| !! | CTCAGTGGGGGGCATTCTCT+TGG | - | chr4_2:50808359-50808378 | None:intergenic | 60.0% |
| GCCCCCCACTGAGATGAGAA+TGG | + | chr4_2:50808366-50808385 | Msa0605050:intron | 60.0% | |
| GATCAGCCTGCACGGTCTAC+TGG | - | chr4_2:50809380-50809399 | None:intergenic | 60.0% | |
| GATCAGCCTGCACGGTCTAC+TGG | - | chr4_2:50809380-50809399 | None:intergenic | 60.0% | |
| ACGTGGCAGCAGGGGAATGG+AGG | - | chr4_2:50808466-50808485 | None:intergenic | 65.0% | |
| GACACGTGGCAGCAGGGGAA+TGG | - | chr4_2:50808469-50808488 | None:intergenic | 65.0% | |
| TTGTCAAACGCGGCCGCTCC+CGG | + | chr4_2:50808524-50808543 | Msa0605050:intron | 65.0% | |
| ATATTCCCGGGAGCGGCGCC+GGG | - | chr4_2:50808545-50808564 | None:intergenic | 70.0% | |
| GATATTCCCGGGAGCGGCGC+CGG | - | chr4_2:50808546-50808565 | None:intergenic | 70.0% | |
| ! | GCCGCTCCCGGCGCCGCTCC+CGG | + | chr4_2:50808536-50808555 | Msa0605050:intron | 90.0% |
| !! | CCCGGGAGCGGCGCCGGGAG+CGG | - | chr4_2:50808540-50808559 | None:intergenic | 90.0% |
| ! | CCGCTCCCGGCGCCGCTCCC+GGG | + | chr4_2:50808537-50808556 | Msa0605050:intron | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 50806539 | 50809814 | 50806539 | ID=Msa0605050;Name=Msa0605050 |
| chr4_2 | mRNA | 50806539 | 50809814 | 50806539 | ID=Msa0605050-mRNA-1;Parent=Msa0605050;Name=Msa0605050-mRNA-1;_AED=0.21;_eAED=0.21;_QI=122|0.88|0.8|1|0.66|0.5|10|55|361 |
| chr4_2 | exon | 50806539 | 50806651 | 50806539 | ID=Msa0605050-mRNA-1:exon:12038;Parent=Msa0605050-mRNA-1 |
| chr4_2 | exon | 50806761 | 50806821 | 50806761 | ID=Msa0605050-mRNA-1:exon:12039;Parent=Msa0605050-mRNA-1 |
| chr4_2 | exon | 50806900 | 50807059 | 50806900 | ID=Msa0605050-mRNA-1:exon:12040;Parent=Msa0605050-mRNA-1 |
| chr4_2 | exon | 50807134 | 50807267 | 50807134 | ID=Msa0605050-mRNA-1:exon:12041;Parent=Msa0605050-mRNA-1 |
| chr4_2 | exon | 50807370 | 50807481 | 50807370 | ID=Msa0605050-mRNA-1:exon:12042;Parent=Msa0605050-mRNA-1 |
| chr4_2 | exon | 50807608 | 50807760 | 50807608 | ID=Msa0605050-mRNA-1:exon:12043;Parent=Msa0605050-mRNA-1 |
| chr4_2 | exon | 50808892 | 50809081 | 50808892 | ID=Msa0605050-mRNA-1:exon:12044;Parent=Msa0605050-mRNA-1 |
| chr4_2 | exon | 50809094 | 50809242 | 50809094 | ID=Msa0605050-mRNA-1:exon:12045;Parent=Msa0605050-mRNA-1 |
| chr4_2 | exon | 50809433 | 50809521 | 50809433 | ID=Msa0605050-mRNA-1:exon:12046;Parent=Msa0605050-mRNA-1 |
| chr4_2 | exon | 50809713 | 50809814 | 50809713 | ID=Msa0605050-mRNA-1:exon:12047;Parent=Msa0605050-mRNA-1 |
| chr4_2 | five_prime_UTR | 50806539 | 50806651 | 50806539 | ID=Msa0605050-mRNA-1:five_prime_utr;Parent=Msa0605050-mRNA-1 |
| chr4_2 | five_prime_UTR | 50806761 | 50806769 | 50806761 | ID=Msa0605050-mRNA-1:five_prime_utr;Parent=Msa0605050-mRNA-1 |
| chr4_2 | CDS | 50806770 | 50806821 | 50806770 | ID=Msa0605050-mRNA-1:cds;Parent=Msa0605050-mRNA-1 |
| chr4_2 | CDS | 50806900 | 50807059 | 50806900 | ID=Msa0605050-mRNA-1:cds;Parent=Msa0605050-mRNA-1 |
| chr4_2 | CDS | 50807134 | 50807267 | 50807134 | ID=Msa0605050-mRNA-1:cds;Parent=Msa0605050-mRNA-1 |
| chr4_2 | CDS | 50807370 | 50807481 | 50807370 | ID=Msa0605050-mRNA-1:cds;Parent=Msa0605050-mRNA-1 |
| chr4_2 | CDS | 50807608 | 50807760 | 50807608 | ID=Msa0605050-mRNA-1:cds;Parent=Msa0605050-mRNA-1 |
| chr4_2 | CDS | 50808892 | 50809081 | 50808892 | ID=Msa0605050-mRNA-1:cds;Parent=Msa0605050-mRNA-1 |
| chr4_2 | CDS | 50809094 | 50809242 | 50809094 | ID=Msa0605050-mRNA-1:cds;Parent=Msa0605050-mRNA-1 |
| chr4_2 | CDS | 50809433 | 50809521 | 50809433 | ID=Msa0605050-mRNA-1:cds;Parent=Msa0605050-mRNA-1 |
| chr4_2 | CDS | 50809713 | 50809759 | 50809713 | ID=Msa0605050-mRNA-1:cds;Parent=Msa0605050-mRNA-1 |
| chr4_2 | three_prime_UTR | 50809760 | 50809814 | 50809760 | ID=Msa0605050-mRNA-1:three_prime_utr;Parent=Msa0605050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
