AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0607140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0607140 MtrunA17_Chr4g0038711 95.257 506 19 2 1 506 1 501 0.0 987
Msa0607140 MtrunA17_Chr3g0143701 50.781 512 229 8 12 506 5 510 1.06e-180 516
Msa0607140 MtrunA17_Chr5g0406331 47.701 522 239 7 6 506 3 511 8.20e-171 491
Msa0607140 MtrunA17_Chr5g0406351 49.697 495 225 6 29 506 46 533 1.65e-167 484
Msa0607140 MtrunA17_Chr2g0281341 49.210 443 218 3 64 506 84 519 3.89e-156 454
Msa0607140 MtrunA17_Chr6g0458931 36.543 457 270 7 51 504 15 454 5.41e-96 298
Msa0607140 MtrunA17_Chr2g0331721 36.891 431 253 6 45 472 14 428 2.29e-92 289
Msa0607140 MtrunA17_Chr7g0230011 34.430 456 280 5 51 504 4 442 1.88e-82 263
Msa0607140 MtrunA17_Chr6g0459021 33.624 458 287 5 47 504 6 446 1.13e-81 261
Msa0607140 MtrunA17_Chr8g0376991 33.409 443 278 4 62 504 10 435 2.48e-81 259
Msa0607140 MtrunA17_Chr3g0122921 33.183 443 261 6 62 504 20 427 1.18e-79 255
Msa0607140 MtrunA17_Chr6g0459031 35.135 444 268 6 63 504 2 427 1.62e-78 252
Msa0607140 MtrunA17_Chr6g0458921 35.135 444 268 6 63 504 2 427 1.25e-77 249
Msa0607140 MtrunA17_Chr4g0057851 33.729 421 262 3 74 494 9 412 3.49e-77 248
Msa0607140 MtrunA17_Chr5g0422741 33.333 453 285 4 52 504 3 438 1.01e-75 245
Msa0607140 MtrunA17_Chr6g0459011 36.228 403 240 5 92 494 2 387 4.42e-71 231
Msa0607140 MtrunA17_Chr6g0459001 31.656 477 268 5 59 494 6 465 5.96e-71 233
Msa0607140 MtrunA17_Chr1g0198531 32.743 452 283 7 51 501 3 434 1.39e-68 226
Msa0607140 MtrunA17_Chr2g0328081 32.506 443 281 5 63 504 2 427 1.64e-68 226
Msa0607140 MtrunA17_Chr3g0077651 31.264 435 282 4 62 494 39 458 1.63e-67 224
Msa0607140 MtrunA17_Chr1g0198541 30.493 446 287 5 49 494 4 426 7.06e-64 214
Msa0607140 MtrunA17_Chr8g0387941 24.459 462 310 13 59 505 8 445 3.38e-31 125
Msa0607140 MtrunA17_Chr3g0140761 24.401 459 285 13 76 495 34 469 5.14e-28 116
Msa0607140 MtrunA17_Chr3g0130641 25.000 476 311 16 57 506 17 472 6.58e-28 116
Msa0607140 MtrunA17_Chr4g0027241 25.887 479 313 16 41 502 8 461 8.06e-28 115
Msa0607140 MtrunA17_Chr1g0146491 25.000 468 303 14 61 495 7 459 5.10e-27 114
Msa0607140 MtrunA17_Chr1g0206871 25.934 455 284 15 76 492 16 455 1.72e-26 112
Msa0607140 MtrunA17_Chr5g0447221 24.229 454 296 14 76 499 30 465 7.30e-26 110
Msa0607140 MtrunA17_Chr3g0103271 23.992 471 313 13 47 492 7 457 2.35e-25 108
Msa0607140 MtrunA17_Chr3g0103231 25.459 436 277 12 54 461 6 421 2.54e-25 108
Msa0607140 MtrunA17_Chr4g0037201 25.482 467 293 17 76 506 60 507 4.97e-25 108
Msa0607140 MtrunA17_Chr3g0125081 25.202 496 308 20 46 506 7 474 9.99e-25 107
Msa0607140 MtrunA17_Chr5g0447231 24.059 478 313 14 51 499 6 462 1.54e-24 106
Msa0607140 MtrunA17_Chr3g0140541 24.638 483 299 14 47 496 8 458 3.39e-24 105
Msa0607140 MtrunA17_Chr1g0146411 22.965 479 314 13 55 496 1 461 1.47e-23 103
Msa0607140 MtrunA17_Chr3g0125101 24.784 464 293 17 76 506 35 475 1.53e-23 103
Msa0607140 MtrunA17_Chr3g0125091 25.108 462 294 16 76 506 35 475 2.19e-23 103
Msa0607140 MtrunA17_Chr3g0130651 24.396 455 285 13 45 470 6 430 4.39e-23 102
Msa0607140 MtrunA17_Chr3g0140531 25.996 477 304 15 51 497 3 460 8.82e-23 101
Msa0607140 MtrunA17_Chr1g0184721 24.402 418 277 12 99 504 47 437 2.43e-22 99.8
Msa0607140 MtrunA17_Chr3g0103211 25.908 413 264 12 76 461 24 421 3.66e-22 99.4
Msa0607140 MtrunA17_Chr8g0384661 23.305 472 318 14 47 491 23 477 4.91e-22 99.0
Msa0607140 MtrunA17_Chr1g0198081 24.582 419 288 12 85 494 69 468 5.94e-22 98.6
Msa0607140 MtrunA17_Chr2g0293331 25.442 452 294 14 76 500 13 448 7.66e-21 95.1
Msa0607140 MtrunA17_Chr4g0058161 25.547 411 260 16 106 504 71 447 1.12e-20 94.7
Msa0607140 MtrunA17_Chr1g0146331 23.478 460 313 13 63 497 10 455 1.60e-20 94.4
Msa0607140 MtrunA17_Chr3g0103221 23.981 417 267 11 76 461 31 428 1.84e-20 94.0
Msa0607140 MtrunA17_Chr1g0159761 24.307 469 289 15 76 503 28 471 5.40e-20 92.8
Msa0607140 MtrunA17_Chr1g0206821 22.244 508 289 15 76 492 23 515 1.25e-19 92.0
Msa0607140 MtrunA17_Chr1g0146391 22.777 461 308 11 63 494 2 443 4.09e-18 87.0
Msa0607140 MtrunA17_Chr1g0206831 25.767 326 198 11 192 491 20 327 4.86e-18 85.5
Msa0607140 MtrunA17_Chr1g0206851 23.796 353 225 11 171 497 36 370 7.56e-17 82.4
Msa0607140 MtrunA17_Chr3g0112971 24.679 389 241 17 122 495 73 424 5.95e-13 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0607140 AT1G47670.1 50.790 443 211 3 64 506 82 517 1.20e-153 448
Msa0607140 AT4G35180.1 47.660 470 215 9 50 506 27 478 3.21e-145 425
Msa0607140 AT4G35180.2 51.228 285 123 5 65 346 47 318 8.83e-95 291
Msa0607140 AT5G40780.1 33.049 469 284 6 36 504 7 445 1.41e-89 281
Msa0607140 AT1G24400.1 34.061 458 282 4 47 504 3 440 9.73e-86 271
Msa0607140 AT1G48640.1 33.917 457 285 4 49 505 14 453 7.96e-82 261
Msa0607140 AT1G61270.1 34.419 430 267 4 67 496 25 439 5.13e-81 259
Msa0607140 AT3G01760.1 36.142 451 258 12 57 496 4 435 6.37e-81 259
Msa0607140 AT1G67640.1 33.987 459 282 6 47 504 2 440 7.86e-81 259
Msa0607140 AT5G40780.3 33.898 413 256 4 92 504 2 397 5.48e-79 253
Msa0607140 AT5G40780.2 33.898 413 256 4 92 504 2 397 5.48e-79 253
Msa0607140 AT1G25530.1 33.333 444 278 5 59 501 11 437 1.82e-71 234
Msa0607140 AT1G71680.1 30.909 440 278 7 59 492 16 435 6.91e-56 193
Msa0607140 AT1G71680.2 32.456 342 207 5 59 395 16 338 8.95e-50 175
Msa0607140 AT1G10010.1 26.000 450 278 13 74 491 26 452 1.29e-28 119
Msa0607140 AT1G10010.2 25.630 476 294 15 48 491 6 453 1.29e-28 119
Msa0607140 AT5G09220.1 25.806 465 289 13 76 506 46 488 1.63e-26 112
Msa0607140 AT1G08230.2 23.377 462 313 13 59 505 11 446 3.66e-25 108
Msa0607140 AT1G58360.1 23.935 493 307 13 38 494 10 470 3.68e-25 108
Msa0607140 AT5G41800.1 23.504 468 323 11 48 505 2 444 7.88e-25 107
Msa0607140 AT5G63850.1 24.516 465 295 14 76 506 19 461 1.25e-23 103
Msa0607140 AT5G49630.1 24.174 484 304 14 49 494 10 468 4.12e-23 102
Msa0607140 AT1G44100.1 24.190 463 298 13 57 484 12 456 5.60e-23 102
Msa0607140 AT1G77380.1 25.339 442 272 15 74 478 28 448 9.18e-21 95.5
Msa0607140 AT5G23810.1 25.416 421 281 11 75 470 25 437 1.66e-18 88.6
Msa0607140 AT2G39890.2 25.974 462 282 20 54 500 21 437 4.12e-17 84.0
Msa0607140 AT2G39890.1 25.974 462 282 20 54 500 21 437 4.12e-17 84.0
Msa0607140 AT1G08230.3 23.599 339 220 12 180 505 34 346 1.52e-16 81.6
Msa0607140 AT1G08230.4 23.599 339 220 12 180 505 15 327 1.79e-16 81.3
Msa0607140 AT1G08230.6 23.599 339 220 12 180 505 15 327 1.79e-16 81.3
Msa0607140 AT1G08230.5 23.599 339 220 12 180 505 15 327 1.79e-16 81.3
Msa0607140 AT3G55740.1 25.109 458 291 19 54 500 18 434 4.29e-16 80.9
Msa0607140 AT3G55740.2 25.990 404 261 15 106 500 4 378 9.33e-15 76.3
Msa0607140 AT3G55740.3 25.990 404 261 15 106 500 4 378 9.33e-15 76.3
Msa0607140 AT2G39890.3 26.716 408 253 17 106 500 4 378 1.35e-14 75.9
Msa0607140 AT2G36590.1 25.355 422 263 17 54 465 15 394 1.57e-14 76.3
Msa0607140 AT5G02170.1 25.547 411 251 17 65 463 123 490 2.58e-14 75.9

Find 117 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTCGTGATTGCTGGATTT+TGG 0.078296 4_2:-53852870 Msa0607140:CDS
CAATCTTGTGCTTGAAATTC+AGG 0.203490 4_2:-53853639 Msa0607140:intron
AAAATAGGCATTACCATTTC+TGG 0.213721 4_2:+53856227 None:intergenic
CAATCGGCGCACTTTATGTT+TGG 0.238539 4_2:-53852618 Msa0607140:CDS
ACATGCTTTCGTTTCTTCTT+TGG 0.238876 4_2:-53852484 Msa0607140:CDS
TAGTTGCTTGTCCTTAATTA+TGG 0.250613 4_2:+53852202 None:intergenic
ACTTCTTCAAACCATAATTA+AGG 0.254258 4_2:-53852213 Msa0607140:exon
AATATGATAAGTTGCAAAAT+AGG 0.259667 4_2:+53856212 None:intergenic
ACCTCGTACTTGGTTGTTTA+GGG 0.261540 4_2:-53852303 Msa0607140:CDS
CTCAATGGCTGCTGTCTCTT+TGG 0.264223 4_2:-53853837 Msa0607140:CDS
AACCTCGTACTTGGTTGTTT+AGG 0.265831 4_2:-53852304 Msa0607140:CDS
GTTCTTAGTGTTTACTTGTT+TGG 0.275657 4_2:-53853891 Msa0607140:CDS
ATAGGAAGCCACTCATCTTT+TGG 0.289993 4_2:+53856258 None:intergenic
ATAAGGACTTTGGCTGATAA+AGG 0.291015 4_2:-53852247 Msa0607140:CDS
CCATTTCTGGATTCTGTGAT+AGG 0.314074 4_2:+53856240 None:intergenic
CCTGTGGCCTTTGCAACTCT+TGG 0.315349 4_2:-53856153 Msa0607140:CDS
AGTCCCGCTTTAAATATTTA+CGG 0.317869 4_2:-53852079 Msa0607140:three_prime_UTR
GAGCTTCATGAATCTACTTC+TGG 0.318484 4_2:-53854612 Msa0607140:CDS
TTCCTTGCAATGTCTGCCTT+TGG 0.340634 4_2:-53854567 Msa0607140:intron
AATCGGCGCACTTTATGTTT+GGG 0.346806 4_2:-53852617 Msa0607140:CDS
TTTCCAGTAATGTATCTATC+AGG 0.355055 4_2:-53854034 Msa0607140:CDS
GCGGGACTCATCTTAATAGT+AGG 0.369592 4_2:+53852094 None:intergenic
CTTGTTCTTTGTGGAATTGT+GGG 0.372607 4_2:+53852653 None:intergenic
TGCTTTCAGATACCAGATAA+AGG 0.373540 4_2:-53852691 Msa0607140:intron
CCAAGCCTTTCAGCTCTGAT+AGG 0.373568 4_2:-53852421 Msa0607140:CDS
AAGCTCAACAAGGAGAAATA+TGG 0.377547 4_2:+53854629 None:intergenic
ATGGCTGCTGTCTCTTTGGT+AGG 0.380345 4_2:-53853833 Msa0607140:CDS
CCTCCTGATAGATACATTAC+TGG 0.381200 4_2:+53854031 None:intergenic
GCCGTTAACAATCCTTTATC+TGG 0.385634 4_2:+53852679 None:intergenic
TGCTTTCGTTTCTTCTTTGG+AGG 0.390245 4_2:-53852481 Msa0607140:CDS
AGCTCCAAGTTGTCGAAAAC+AGG 0.408982 4_2:+53852553 None:intergenic
GTTTGTCAATAGCATTCATT+TGG 0.422947 4_2:-53854662 Msa0607140:CDS
ATAAATTATTTGCAGGGCAT+GGG 0.428609 4_2:-53854694 Msa0607140:intron
TGACACCAATGTAGTATTGT+AGG 0.431492 4_2:+53853736 None:intergenic
CATATTCTTAATTCCAACAT+TGG 0.433539 4_2:-53856195 Msa0607140:CDS
TAAGGACTTTGGCTGATAAA+GGG 0.439804 4_2:-53852246 Msa0607140:CDS
CATATAGGATAGGATATAGT+GGG 0.453442 4_2:-53852035 None:intergenic
TGGCTGCTGTCTCTTTGGTA+GGG 0.461267 4_2:-53853832 Msa0607140:CDS
GCAGCCATTGAGTTAAGATT+AGG 0.461540 4_2:+53853848 None:intergenic
GCTTGTTCTTTGTGGAATTG+TGG 0.462491 4_2:+53852652 None:intergenic
ATTCTTTGCGAAAACGATGA+TGG 0.470593 4_2:-53853953 Msa0607140:CDS
CCTATCACAGAATCCAGAAA+TGG 0.476949 4_2:-53856240 Msa0607140:CDS
TGGTCACTTTCTGTTAAGAA+AGG 0.480834 4_2:-53853776 Msa0607140:CDS
AATTGGACACTTGGTGAAGA+AGG 0.481993 4_2:+53856303 None:intergenic
GCTGAAAGGCTTGGTAAGAA+AGG 0.489015 4_2:+53852430 None:intergenic
ACATATAGGATAGGATATAG+TGG 0.491140 4_2:-53852036 None:intergenic
TGGTTGTTCAACCTCGTACT+TGG 0.491486 4_2:-53852313 Msa0607140:CDS
AAGCATGTTCTCAACCATCT+TGG 0.495824 4_2:+53852499 None:intergenic
GGTTGCTGCTATAAGGACTT+TGG 0.496679 4_2:-53852257 Msa0607140:CDS
AAGTGTGCAGTAACTTATAG+AGG 0.500397 4_2:+53853802 None:intergenic
TGGCCTTTGCAACTCTTGGT+TGG 0.502126 4_2:-53856149 Msa0607140:intron
GTTGCCTAATCTTAACTCAA+TGG 0.503495 4_2:-53853852 Msa0607140:CDS
GCTTTCGTTTCTTCTTTGGA+GGG 0.504494 4_2:-53852480 Msa0607140:CDS
GTTAAGAAAGGTAGGCCAAT+GGG 0.512156 4_2:-53853764 Msa0607140:CDS
ACCAGATAAAGGATTGTTAA+CGG 0.512376 4_2:-53852680 Msa0607140:CDS
TTTCCGTAAATATTTAAAGC+GGG 0.513291 4_2:+53852076 None:intergenic
CAAGCAACAAAATTCTCAAT+CGG 0.514802 4_2:-53852634 Msa0607140:CDS
ATGTTTATAATCACCGGTGG+TGG 0.517149 4_2:-53853998 Msa0607140:CDS
TGGTCTGGTAATTGGACACT+TGG 0.522453 4_2:+53856294 None:intergenic
TGAAAGTGTACATATAGGAT+AGG 0.522591 4_2:-53852045 Msa0607140:three_prime_UTR
TTCTTTGCGAAAACGATGAT+GGG 0.525204 4_2:-53853952 Msa0607140:CDS
CCAAGAGTTGCAAAGGCCAC+AGG 0.532847 4_2:+53856153 None:intergenic
CGGGACTCATCTTAATAGTA+GGG 0.534182 4_2:+53852095 None:intergenic
TACCAAAGGCAGACATTGCA+AGG 0.535979 4_2:+53854565 None:intergenic
GGCTGCTGTCTCTTTGGTAG+GGG 0.537289 4_2:-53853831 Msa0607140:CDS
CTGAAAGGCTTGGTAAGAAA+GGG 0.541858 4_2:+53852431 None:intergenic
TTGCTTCATTGTCCCACCAC+CGG 0.544393 4_2:+53853985 None:intergenic
AGGCAGACATTGCAAGGAAG+AGG 0.549160 4_2:+53854571 None:intergenic
CCCAAAATCCAGCAATCACG+AGG 0.553734 4_2:+53852869 None:intergenic
AAACAGGCATTGCATAGACT+TGG 0.556797 4_2:+53852569 None:intergenic
CCTATCAGAGCTGAAAGGCT+TGG 0.557040 4_2:+53852421 None:intergenic
TCAAGCTCTCATGCTTCCTG+TGG 0.559402 4_2:-53856169 Msa0607140:CDS
ATGCATATCCTTGTTTCATG+TGG 0.563760 4_2:-53852372 Msa0607140:CDS
TGTATAACCGTAGGAGAGAG+TGG 0.565118 4_2:+53856372 None:intergenic
ATGGTCACTCCTCTACGCAT+TGG 0.573182 4_2:+53852925 None:intergenic
GAGAGCTTGAAATCCAATGT+TGG 0.573619 4_2:+53856182 None:intergenic
ACAAATAAAATGAATAATCG+TGG 0.574357 4_2:+53852178 None:intergenic
TGTTAAGAAAGGTAGGCCAA+TGG 0.580802 4_2:-53853765 Msa0607140:CDS
TAAATTATTTGCAGGGCATG+GGG 0.582023 4_2:-53854693 Msa0607140:intron
GACTCATCTTAATAGTAGGG+TGG 0.584822 4_2:+53852098 None:intergenic
TGATTATATGAGATCAGAAG+TGG 0.584941 4_2:-53856430 Msa0607140:CDS
CACTTTCTGTTAAGAAAGGT+AGG 0.587196 4_2:-53853772 Msa0607140:CDS
AGCCTTTCAGCTCTGATAGG+TGG 0.589264 4_2:-53852418 Msa0607140:CDS
ATTGGACACTTGGTGAAGAA+GGG 0.592437 4_2:+53856304 None:intergenic
ACTCATCTTAATAGTAGGGT+GGG 0.601518 4_2:+53852099 None:intergenic
TGAAGAAGGGTCAGATTCAG+AGG 0.601875 4_2:+53856317 None:intergenic
ATTATTGTGCTAGCTTTCAG+AGG 0.602299 4_2:-53853665 Msa0607140:CDS
ATGCATATGTGAGAGGCACA+AGG 0.608972 4_2:+53852389 None:intergenic
TGTTTATAATCACCGGTGGT+GGG 0.610386 4_2:-53853997 Msa0607140:CDS
ACTCGCTGAGCGGAGTCGAG+TGG 0.615391 4_2:-53853913 Msa0607140:CDS
TCATGAATGTGTATAACCGT+AGG 0.618379 4_2:+53856363 None:intergenic
GTATAACCGTAGGAGAGAGT+GGG 0.619616 4_2:+53856373 None:intergenic
GGCAATGAGTATATACGCAA+TGG 0.624586 4_2:+53852906 None:intergenic
AGAGATAACCACATGAAACA+AGG 0.625732 4_2:+53852364 None:intergenic
ATCAACATCCAAAAGATGAG+TGG 0.627231 4_2:-53856266 Msa0607140:CDS
TAACAAATATATACACACAT+GGG 0.636065 4_2:-53856468 Msa0607140:exon
CAAGGATATGCATATGTGAG+AGG 0.637059 4_2:+53852382 None:intergenic
GTACCAACCAAGAGTTGCAA+AGG 0.637378 4_2:+53856146 None:intergenic
GTATTGTAGGACACACCCAT+TGG 0.638402 4_2:+53853749 None:intergenic
TGTGTGATGTTTATAATCAC+CGG 0.641698 4_2:-53854004 Msa0607140:CDS
CCAGTAATGTATCTATCAGG+AGG 0.645104 4_2:-53854031 Msa0607140:CDS
TGCAACGCGCACTCGCTGAG+CGG 0.648185 4_2:-53853923 Msa0607140:CDS
TTCCACCTATCAGAGCTGAA+AGG 0.650343 4_2:+53852416 None:intergenic
TATAACCGTAGGAGAGAGTG+GGG 0.651022 4_2:+53856374 None:intergenic
ATAACAAATATATACACACA+TGG 0.655972 4_2:-53856469 Msa0607140:exon
CCAAAATCCAGCAATCACGA+GGG 0.657176 4_2:+53852870 None:intergenic
TAGATTCATGAAGCTCAACA+AGG 0.657975 4_2:+53854619 None:intergenic
TCCCTAAACAACCAAGTACG+AGG 0.672104 4_2:+53852302 None:intergenic
TGCATATGTGAGAGGCACAA+GGG 0.679152 4_2:+53852390 None:intergenic
TCGAAGGAACCAATGCGTAG+AGG 0.679854 4_2:-53852934 Msa0607140:CDS
CAAAATCCAGCAATCACGAG+GGG 0.680158 4_2:+53852871 None:intergenic
TGTGTCCTACAATACTACAT+TGG 0.690060 4_2:-53853741 Msa0607140:CDS
GTCACTGATCTTCACCACGG+TGG 0.710186 4_2:+53853706 None:intergenic
GTGATGTTTATAATCACCGG+TGG 0.730710 4_2:-53854001 Msa0607140:CDS
AATGTCACTGATCTTCACCA+CGG 0.741411 4_2:+53853703 None:intergenic
ATAACCGTAGGAGAGAGTGG+GGG 0.816295 4_2:+53856375 None:intergenic
GGTGTCACAAGAATCCACCG+TGG 0.837457 4_2:-53853720 Msa0607140:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTATTTTTATAAATT+GGG + chr4_2:53853642-53853661 None:intergenic 0.0%
!!! TTAATTTTATTTTTATAAAT+TGG + chr4_2:53853643-53853662 None:intergenic 0.0%
!! AAAAAAAATATTAATAATAA+TGG + chr4_2:53854051-53854070 None:intergenic 0.0%
!! AAAAAATATTATATTTAATT+TGG - chr4_2:53855041-53855060 Msa0607140:intron 0.0%
!!! TATATACATCTATTTTAAAA+CGG - chr4_2:53852895-53852914 Msa0607140:CDS 10.0%
!!! TTATATTTTCTAATTAGAAA+AGG - chr4_2:53853215-53853234 Msa0607140:intron 10.0%
!! GATTTAATATATATCAAATA+TGG - chr4_2:53855179-53855198 Msa0607140:intron 10.0%
!! ATAAAAAAATATGGTAAAGT+CGG + chr4_2:53853037-53853056 None:intergenic 15.0%
!! TTCTTCAATATATATAATAC+TGG - chr4_2:53853129-53853148 Msa0607140:intron 15.0%
!! ATACAAAAATTGTTTATATG+AGG + chr4_2:53853282-53853301 None:intergenic 15.0%
!! GCTTAAAATATTGTAATTTA+AGG - chr4_2:53853533-53853552 Msa0607140:intron 15.0%
!! TTATCATATAAATTATTTGC+AGG - chr4_2:53853880-53853899 Msa0607140:CDS 15.0%
!! TATCATATAAATTATTTGCA+GGG - chr4_2:53853881-53853900 Msa0607140:CDS 15.0%
!! TAAAGGATGAATTTATAATT+AGG + chr4_2:53854085-53854104 None:intergenic 15.0%
!!! ATCCTTTGAATATTAATTTT+AGG - chr4_2:53854496-53854515 Msa0607140:intron 15.0%
!!! TTAACTTTTAACATAAATGT+CGG + chr4_2:53855786-53855805 None:intergenic 15.0%
!!! TTTTAATTTAGTGTCTTCAT+TGG - chr4_2:53852054-53852073 Msa0607140:three_prime_UTR 20.0%
!! ATAACAAATATATACACACA+TGG - chr4_2:53852112-53852131 Msa0607140:three_prime_UTR 20.0%
!! TAACAAATATATACACACAT+GGG - chr4_2:53852113-53852132 Msa0607140:three_prime_UTR 20.0%
!! AATATGATAAGTTGCAAAAT+AGG + chr4_2:53852372-53852391 None:intergenic 20.0%
!!! GTTATACTTTGAAAAGTATT+CGG + chr4_2:53852497-53852516 None:intergenic 20.0%
!!! TAGCTTTAAATAAGTTAGTT+AGG - chr4_2:53852570-53852589 Msa0607140:CDS 20.0%
!! GTTTAAAAAACAAATTGTCA+CGG + chr4_2:53852617-53852636 None:intergenic 20.0%
!!! TGACAATTTGTTTTTTAAAC+CGG - chr4_2:53852617-53852636 Msa0607140:CDS 20.0%
!!! AAAACTAATTGTATTTTGCA+GGG - chr4_2:53852682-53852701 Msa0607140:CDS 20.0%
!!! ATTAGTTTTTGGCTAAAATA+TGG + chr4_2:53852715-53852734 None:intergenic 20.0%
!!! ACAATTAGACAATTAGTTTT+TGG + chr4_2:53852726-53852745 None:intergenic 20.0%
!! AAACGATGAAAATGTTATAT+TGG - chr4_2:53852805-53852824 Msa0607140:intron 20.0%
!! TATATTGGATCATTGTAAAA+TGG - chr4_2:53852820-53852839 Msa0607140:intron 20.0%
!!! CACTTTTTAGCAAAAAAATT+AGG - chr4_2:53853100-53853119 Msa0607140:intron 20.0%
!! TCAATATATATAATACTGGA+TGG - chr4_2:53853133-53853152 Msa0607140:intron 20.0%
!! ATATACCAAATAAACAACAT+AGG - chr4_2:53853318-53853337 Msa0607140:intron 20.0%
!! AATTATTATGATAGACAATG+AGG + chr4_2:53853423-53853442 None:intergenic 20.0%
!!! TATTTTTATAAATTGGGGAT+GGG + chr4_2:53853636-53853655 None:intergenic 20.0%
!!! TTATTTTTATAAATTGGGGA+TGG + chr4_2:53853637-53853656 None:intergenic 20.0%
!! CACCTAAAATTAATATTCAA+AGG + chr4_2:53854501-53854520 None:intergenic 20.0%
!! CTTCATCATTAAATAAATAC+AGG - chr4_2:53855003-53855022 Msa0607140:intron 20.0%
!! TTGTAGAATGTATTTGAATT+TGG + chr4_2:53855151-53855170 None:intergenic 20.0%
!! TATATTTAATTCTCAAGCAA+AGG + chr4_2:53855267-53855286 None:intergenic 20.0%
!! TGAGAATTAAATATAGAAGT+TGG - chr4_2:53855272-53855291 Msa0607140:intron 20.0%
!! TCTTACTATTAGTAATTAGT+TGG - chr4_2:53855560-53855579 Msa0607140:intron 20.0%
!!! TGGACATTTTTTATTCTTTA+TGG + chr4_2:53856065-53856084 None:intergenic 20.0%
!! ACAAATAAAATGAATAATCG+TGG + chr4_2:53856406-53856425 None:intergenic 20.0%
!!! TTTTCCGTAAATATTTAAAG+CGG + chr4_2:53856509-53856528 None:intergenic 20.0%
!!! AATTTTGAAAGTGTACATAT+AGG - chr4_2:53856531-53856550 Msa0607140:five_prime_UTR 20.0%
! CATATTCTTAATTCCAACAT+TGG - chr4_2:53852386-53852405 Msa0607140:CDS 25.0%
!! ACTTTTCAAAGTATAACCAA+AGG - chr4_2:53852500-53852519 Msa0607140:CDS 25.0%
! TAAATAAGTTAGTTAGGTTC+AGG - chr4_2:53852576-53852595 Msa0607140:CDS 25.0%
!! GAAAACTAATTGTATTTTGC+AGG - chr4_2:53852681-53852700 Msa0607140:CDS 25.0%
!!! CAGTTTGATTTTGATAACAA+AGG - chr4_2:53852970-53852989 Msa0607140:intron 25.0%
! ATTTGGTATATACTCAACAT+TGG + chr4_2:53853309-53853328 None:intergenic 25.0%
!! AGTTACCTATGTTGTTTATT+TGG + chr4_2:53853326-53853345 None:intergenic 25.0%
!!! CTTTTTTAATGAGGTTTTGT+AGG + chr4_2:53853355-53853374 None:intergenic 25.0%
!!! TTTGCATGTCTTTTTTAATG+AGG + chr4_2:53853364-53853383 None:intergenic 25.0%
! ATAGCTAGACAAATTTGAAT+TGG + chr4_2:53853388-53853407 None:intergenic 25.0%
!!! GCTCAATATGACTTTTTTTT+GGG + chr4_2:53853515-53853534 None:intergenic 25.0%
!!! AGCTCAATATGACTTTTTTT+TGG + chr4_2:53853516-53853535 None:intergenic 25.0%
!! ATTTTTATAAATTGGGGATG+GGG + chr4_2:53853635-53853654 None:intergenic 25.0%
! TTCTTACTTGTTCACTTTAA+AGG + chr4_2:53854102-53854121 None:intergenic 25.0%
! AAGTGAACAAGTAAGAAATT+CGG - chr4_2:53854105-53854124 Msa0607140:intron 25.0%
! TATTATATATGCATCATGCA+TGG + chr4_2:53854145-53854164 None:intergenic 25.0%
!! TAAAGTATTAATTCCTGTCA+TGG + chr4_2:53854395-53854414 None:intergenic 25.0%
!!! GAATATTAATTTTAGGTGCA+AGG - chr4_2:53854503-53854522 Msa0607140:intron 25.0%
!! ACATCTATGGATATAGTTTT+TGG + chr4_2:53855315-53855334 None:intergenic 25.0%
! TCCATAGATGTACATTAATT+TGG - chr4_2:53855324-53855343 Msa0607140:intron 25.0%
! TTCAATTGCTTTCATGAATT+AGG + chr4_2:53855393-53855412 None:intergenic 25.0%
!! CATATATGCAATTGTTATTC+TGG + chr4_2:53855452-53855471 None:intergenic 25.0%
!!! GATGTTTTTTTGGAATTTGA+TGG + chr4_2:53855629-53855648 None:intergenic 25.0%
! AAATTCCAAAAAAACATCGA+AGG - chr4_2:53855631-53855650 Msa0607140:intron 25.0%
! GATTTGACGATTAAGATTAA+CGG - chr4_2:53855807-53855826 Msa0607140:intron 25.0%
! AGAATAAAAAATGTCCAAGA+TGG - chr4_2:53856068-53856087 Msa0607140:intron 25.0%
! ACTTCTTCAAACCATAATTA+AGG - chr4_2:53856368-53856387 Msa0607140:CDS 25.0%
!! TTTCCGTAAATATTTAAAGC+GGG + chr4_2:53856508-53856527 None:intergenic 25.0%
TGATTATATGAGATCAGAAG+TGG - chr4_2:53852151-53852170 Msa0607140:three_prime_UTR 30.0%
!!! CTTTTGGATGTTGATTTTGT+TGG + chr4_2:53852310-53852329 None:intergenic 30.0%
AAAATAGGCATTACCATTTC+TGG + chr4_2:53852357-53852376 None:intergenic 30.0%
TGGTACGTATCTTAATACTT+AGG - chr4_2:53852452-53852471 Msa0607140:CDS 30.0%
!!! TACGAAGTGATTTTTTCCTT+TGG + chr4_2:53852519-53852538 None:intergenic 30.0%
ACGTATATATGATGACATCA+AGG + chr4_2:53852847-53852866 None:intergenic 30.0%
!! TTTGTTTGTTGTTTGAATGC+AGG + chr4_2:53852944-53852963 None:intergenic 30.0%
TAAAGTCGGAATAACTTTCT+AGG + chr4_2:53853023-53853042 None:intergenic 30.0%
TTGAAAACTCATACCGAAAT+CGG - chr4_2:53853069-53853088 Msa0607140:intron 30.0%
TATATATAATACTGGATGGC+AGG - chr4_2:53853137-53853156 Msa0607140:intron 30.0%
CTCAAACTCACTTTAATGAA+TGG + chr4_2:53853484-53853503 None:intergenic 30.0%
TTTCGCAAATAGTTGCAAAA+TGG - chr4_2:53853577-53853596 Msa0607140:intron 30.0%
GAACTGAACTTGATATCTAA+TGG - chr4_2:53853734-53853753 Msa0607140:CDS 30.0%
TATAAATTATTTGCAGGGCA+TGG - chr4_2:53853886-53853905 Msa0607140:CDS 30.0%
ATAAATTATTTGCAGGGCAT+GGG - chr4_2:53853887-53853906 Msa0607140:CDS 30.0%
GTTTGTCAATAGCATTCATT+TGG - chr4_2:53853919-53853938 Msa0607140:CDS 30.0%
AGTGAACAAGTAAGAAATTC+GGG - chr4_2:53854106-53854125 Msa0607140:intron 30.0%
GATCGTGATATTAACTTTGA+TGG + chr4_2:53854259-53854278 None:intergenic 30.0%
ATAGTACAGTCCACATATAT+AGG + chr4_2:53854359-53854378 None:intergenic 30.0%
!! TTAATTTTAGGTGCAAGGTT+AGG - chr4_2:53854508-53854527 Msa0607140:intron 30.0%
TTTCCAGTAATGTATCTATC+AGG - chr4_2:53854547-53854566 Msa0607140:intron 30.0%
TGTGTGATGTTTATAATCAC+CGG - chr4_2:53854577-53854596 Msa0607140:CDS 30.0%
GTTCTTAGTGTTTACTTGTT+TGG - chr4_2:53854690-53854709 Msa0607140:intron 30.0%
!!! TAAGTTACTGCACACTTTTT+TGG - chr4_2:53854785-53854804 Msa0607140:intron 30.0%
! AGTGACATTTTGAATGCTAT+TGG - chr4_2:53854892-53854911 Msa0607140:intron 30.0%
GTAGGTGACATTATGATTTA+GGG - chr4_2:53854964-53854983 Msa0607140:intron 30.0%
TTTAATTCTCAAGCAAAGGA+AGG + chr4_2:53855263-53855282 None:intergenic 30.0%
GCCAAATTAATGTACATCTA+TGG + chr4_2:53855328-53855347 None:intergenic 30.0%
!!! AAACTTTGTTTTTGCTTTGC+AGG - chr4_2:53855595-53855614 Msa0607140:intron 30.0%
!!! AACTTTGTTTTTGCTTTGCA+GGG - chr4_2:53855596-53855615 Msa0607140:intron 30.0%
! ATTTTGGGCATATGGAAATA+AGG - chr4_2:53855727-53855746 Msa0607140:intron 30.0%
ACCAGATAAAGGATTGTTAA+CGG - chr4_2:53855901-53855920 Msa0607140:intron 30.0%
!! ATTTTGTTGCTTGTTCTTTG+TGG + chr4_2:53855940-53855959 None:intergenic 30.0%
CAAGCAACAAAATTCTCAAT+CGG - chr4_2:53855947-53855966 Msa0607140:intron 30.0%
!!! AGGGTTCACATTTTTTATAG+CGG - chr4_2:53856120-53856139 Msa0607140:intron 30.0%
CTTAAGAAACCTCGTAAAAA+TGG - chr4_2:53856238-53856257 Msa0607140:CDS 30.0%
!! GATGCTTTTAAGTGTTCTTT+TGG - chr4_2:53856300-53856319 Msa0607140:CDS 30.0%
TAGTTGCTTGTCCTTAATTA+TGG + chr4_2:53856382-53856401 None:intergenic 30.0%
! AGTCCCGCTTTAAATATTTA+CGG - chr4_2:53856502-53856521 Msa0607140:five_prime_UTR 30.0%
! TGAAAGTGTACATATAGGAT+AGG - chr4_2:53856536-53856555 Msa0607140:five_prime_UTR 30.0%
TCATGAATGTGTATAACCGT+AGG + chr4_2:53852221-53852240 None:intergenic 35.0%
TCAGAGGAAAAACTAGTAGT+TGG + chr4_2:53852251-53852270 None:intergenic 35.0%
!! GATTTTGTTGGTCTGGTAAT+TGG + chr4_2:53852298-53852317 None:intergenic 35.0%
ATCAACATCCAAAAGATGAG+TGG - chr4_2:53852315-53852334 Msa0607140:CDS 35.0%
! AAGTGTAACTTGACCGATTT+CGG + chr4_2:53853085-53853104 None:intergenic 35.0%
! GAGGCTTTATAGTCAACATT+AGG + chr4_2:53853263-53853282 None:intergenic 35.0%
AATTTGTCTAGCTATGAGCA+AGG - chr4_2:53853393-53853412 Msa0607140:intron 35.0%
AGTGATGACTAAGTCTTGAA+AGG - chr4_2:53853668-53853687 Msa0607140:CDS 35.0%
TAAATTATTTGCAGGGCATG+GGG - chr4_2:53853888-53853907 Msa0607140:CDS 35.0%
AAGCTCAACAAGGAGAAATA+TGG + chr4_2:53853955-53853974 None:intergenic 35.0%
TAGATTCATGAAGCTCAACA+AGG + chr4_2:53853965-53853984 None:intergenic 35.0%
AATGGAAATGCACTTACCAA+AGG + chr4_2:53854033-53854052 None:intergenic 35.0%
GTGAACAAGTAAGAAATTCG+GGG - chr4_2:53854107-53854126 Msa0607140:intron 35.0%
CTCTAATATATCACCATGAC+AGG - chr4_2:53854379-53854398 Msa0607140:intron 35.0%
ATTCTTTGCGAAAACGATGA+TGG - chr4_2:53854628-53854647 Msa0607140:CDS 35.0%
TTCTTTGCGAAAACGATGAT+GGG - chr4_2:53854629-53854648 Msa0607140:CDS 35.0%
GTTGCCTAATCTTAACTCAA+TGG - chr4_2:53854729-53854748 Msa0607140:intron 35.0%
AAGTGTGCAGTAACTTATAG+AGG + chr4_2:53854782-53854801 None:intergenic 35.0%
! TGGTCACTTTCTGTTAAGAA+AGG - chr4_2:53854805-53854824 Msa0607140:intron 35.0%
CACTTTCTGTTAAGAAAGGT+AGG - chr4_2:53854809-53854828 Msa0607140:intron 35.0%
TGTGTCCTACAATACTACAT+TGG - chr4_2:53854840-53854859 Msa0607140:intron 35.0%
TGACACCAATGTAGTATTGT+AGG + chr4_2:53854848-53854867 None:intergenic 35.0%
!! ATTATTGTGCTAGCTTTCAG+AGG - chr4_2:53854916-53854935 Msa0607140:intron 35.0%
CAATCTTGTGCTTGAAATTC+AGG - chr4_2:53854942-53854961 Msa0607140:intron 35.0%
GGTAGGTGACATTATGATTT+AGG - chr4_2:53854963-53854982 Msa0607140:intron 35.0%
GAATAAATCCAACGACTATG+CGG - chr4_2:53855091-53855110 Msa0607140:intron 35.0%
!!! ACTTTGTTTTTGCTTTGCAG+GGG - chr4_2:53855597-53855616 Msa0607140:intron 35.0%
!!! TGGTTCCTTCGATGTTTTTT+TGG + chr4_2:53855639-53855658 None:intergenic 35.0%
TCGGTCAATTTACACATGAA+TGG + chr4_2:53855767-53855786 None:intergenic 35.0%
TGCTTTCAGATACCAGATAA+AGG - chr4_2:53855890-53855909 Msa0607140:intron 35.0%
CTTGTTCTTTGTGGAATTGT+GGG + chr4_2:53855931-53855950 None:intergenic 35.0%
ACATGCTTTCGTTTCTTCTT+TGG - chr4_2:53856097-53856116 Msa0607140:intron 35.0%
! ATGCATATCCTTGTTTCATG+TGG - chr4_2:53856209-53856228 Msa0607140:CDS 35.0%
AGAGATAACCACATGAAACA+AGG + chr4_2:53856220-53856239 None:intergenic 35.0%
!! CAGATTACACCATTTTTACG+AGG + chr4_2:53856250-53856269 None:intergenic 35.0%
CTCGTAAAAATGGTGTAATC+TGG - chr4_2:53856248-53856267 Msa0607140:CDS 35.0%
!! GCTTTTAAGTGTTCTTTTGG+TGG - chr4_2:53856303-53856322 Msa0607140:CDS 35.0%
ATAAGGACTTTGGCTGATAA+AGG - chr4_2:53856334-53856353 Msa0607140:CDS 35.0%
TAAGGACTTTGGCTGATAAA+GGG - chr4_2:53856335-53856354 Msa0607140:CDS 35.0%
ACTCATCTTAATAGTAGGGT+GGG + chr4_2:53856485-53856504 None:intergenic 35.0%
! AGAGAGTGGGGGTTTAAAAT+TGG + chr4_2:53852198-53852217 None:intergenic 40.0%
! ATTGGACACTTGGTGAAGAA+GGG + chr4_2:53852280-53852299 None:intergenic 40.0%
! AATTGGACACTTGGTGAAGA+AGG + chr4_2:53852281-53852300 None:intergenic 40.0%
!!! GGATGTTGATTTTGTTGGTC+TGG + chr4_2:53852305-53852324 None:intergenic 40.0%
! ATAGGAAGCCACTCATCTTT+TGG + chr4_2:53852326-53852345 None:intergenic 40.0%
! CCATTTCTGGATTCTGTGAT+AGG + chr4_2:53852344-53852363 None:intergenic 40.0%
CCTATCACAGAATCCAGAAA+TGG - chr4_2:53852341-53852360 Msa0607140:CDS 40.0%
GAGAGCTTGAAATCCAATGT+TGG + chr4_2:53852402-53852421 None:intergenic 40.0%
AATTACACGCAGAGGATATC+CGG + chr4_2:53852639-53852658 None:intergenic 40.0%
TATCCTCTGCGTGTAATTTG+AGG - chr4_2:53852641-53852660 Msa0607140:CDS 40.0%
GAGCTTCATGAATCTACTTC+TGG - chr4_2:53853969-53853988 Msa0607140:CDS 40.0%
CTGCTTGGTTCAACTATTGT+TGG + chr4_2:53854331-53854350 None:intergenic 40.0%
CAACAATAGTTGAACCAAGC+AGG - chr4_2:53854329-53854348 Msa0607140:intron 40.0%
GTACAGTCCACATATATAGG+TGG + chr4_2:53854356-53854375 None:intergenic 40.0%
CCTCCTGATAGATACATTAC+TGG + chr4_2:53854553-53854572 None:intergenic 40.0%
CCAGTAATGTATCTATCAGG+AGG - chr4_2:53854550-53854569 Msa0607140:intron 40.0%
GTGATGTTTATAATCACCGG+TGG - chr4_2:53854580-53854599 Msa0607140:CDS 40.0%
ATGTTTATAATCACCGGTGG+TGG - chr4_2:53854583-53854602 Msa0607140:CDS 40.0%
TGTTTATAATCACCGGTGGT+GGG - chr4_2:53854584-53854603 Msa0607140:CDS 40.0%
GCAGCCATTGAGTTAAGATT+AGG + chr4_2:53854736-53854755 None:intergenic 40.0%
TGTTAAGAAAGGTAGGCCAA+TGG - chr4_2:53854816-53854835 Msa0607140:intron 40.0%
GTTAAGAAAGGTAGGCCAAT+GGG - chr4_2:53854817-53854836 Msa0607140:intron 40.0%
AATGTCACTGATCTTCACCA+CGG + chr4_2:53854881-53854900 None:intergenic 40.0%
CTTGTGCTTGAAATTCAGGT+AGG - chr4_2:53854946-53854965 Msa0607140:intron 40.0%
TTGTGATTGCTGCATAGTTG+CGG - chr4_2:53855069-53855088 Msa0607140:intron 40.0%
CTCAAGCAAAGGAAGGATAA+GGG + chr4_2:53855256-53855275 None:intergenic 40.0%
TCTCAAGCAAAGGAAGGATA+AGG + chr4_2:53855257-53855276 None:intergenic 40.0%
GGCAATGAGTATATACGCAA+TGG + chr4_2:53855678-53855697 None:intergenic 40.0%
! ATTGCTGGATTTTGGGCATA+TGG - chr4_2:53855719-53855738 Msa0607140:intron 40.0%
GCCGTTAACAATCCTTTATC+TGG + chr4_2:53855905-53855924 None:intergenic 40.0%
GCTTGTTCTTTGTGGAATTG+TGG + chr4_2:53855932-53855951 None:intergenic 40.0%
AATCGGCGCACTTTATGTTT+GGG - chr4_2:53855964-53855983 Msa0607140:intron 40.0%
! AAACAGGCATTGCATAGACT+TGG + chr4_2:53856015-53856034 None:intergenic 40.0%
! AATGCCTGTTTTCGACAACT+TGG - chr4_2:53856024-53856043 Msa0607140:intron 40.0%
AAGCATGTTCTCAACCATCT+TGG + chr4_2:53856085-53856104 None:intergenic 40.0%
TGCTTTCGTTTCTTCTTTGG+AGG - chr4_2:53856100-53856119 Msa0607140:intron 40.0%
GCTTTCGTTTCTTCTTTGGA+GGG - chr4_2:53856101-53856120 Msa0607140:intron 40.0%
! CTGAAAGGCTTGGTAAGAAA+GGG + chr4_2:53856153-53856172 None:intergenic 40.0%
CAAGGATATGCATATGTGAG+AGG + chr4_2:53856202-53856221 None:intergenic 40.0%
AACCTCGTACTTGGTTGTTT+AGG - chr4_2:53856277-53856296 Msa0607140:CDS 40.0%
ACCTCGTACTTGGTTGTTTA+GGG - chr4_2:53856278-53856297 Msa0607140:CDS 40.0%
!! TTTTGGTGGTTGCTGCTATA+AGG - chr4_2:53856317-53856336 Msa0607140:CDS 40.0%
GACTCATCTTAATAGTAGGG+TGG + chr4_2:53856486-53856505 None:intergenic 40.0%
CGGGACTCATCTTAATAGTA+GGG + chr4_2:53856489-53856508 None:intergenic 40.0%
TATAACCGTAGGAGAGAGTG+GGG + chr4_2:53852210-53852229 None:intergenic 45.0%
GTATAACCGTAGGAGAGAGT+GGG + chr4_2:53852211-53852230 None:intergenic 45.0%
TGTATAACCGTAGGAGAGAG+TGG + chr4_2:53852212-53852231 None:intergenic 45.0%
TGAAGAAGGGTCAGATTCAG+AGG + chr4_2:53852267-53852286 None:intergenic 45.0%
TGGTCTGGTAATTGGACACT+TGG + chr4_2:53852290-53852309 None:intergenic 45.0%
GTACCAACCAAGAGTTGCAA+AGG + chr4_2:53852438-53852457 None:intergenic 45.0%
TCTCCTCAAATTACACGCAG+AGG + chr4_2:53852647-53852666 None:intergenic 45.0%
TTCCTTGCAATGTCTGCCTT+TGG - chr4_2:53854014-53854033 Msa0607140:CDS 45.0%
TACCAAAGGCAGACATTGCA+AGG + chr4_2:53854019-53854038 None:intergenic 45.0%
AGAAATTCGGGGCTCAAACT+CGG - chr4_2:53854118-53854137 Msa0607140:intron 45.0%
CATATATAGGTGGTCCTGCT+TGG + chr4_2:53854346-53854365 None:intergenic 45.0%
AGCAGGACCACCTATATATG+TGG - chr4_2:53854346-53854365 Msa0607140:intron 45.0%
GTATTGTAGGACACACCCAT+TGG + chr4_2:53854835-53854854 None:intergenic 45.0%
TAAATCCAACGACTATGCGG+CGG - chr4_2:53855094-53855113 Msa0607140:intron 45.0%
CAAAATCCAGCAATCACGAG+GGG + chr4_2:53855713-53855732 None:intergenic 45.0%
CCAAAATCCAGCAATCACGA+GGG + chr4_2:53855714-53855733 None:intergenic 45.0%
! CCTCGTGATTGCTGGATTTT+GGG - chr4_2:53855712-53855731 Msa0607140:intron 45.0%
CAATCGGCGCACTTTATGTT+TGG - chr4_2:53855963-53855982 Msa0607140:intron 45.0%
AGCTCCAAGTTGTCGAAAAC+AGG + chr4_2:53856031-53856050 None:intergenic 45.0%
! GCTGAAAGGCTTGGTAAGAA+AGG + chr4_2:53856154-53856173 None:intergenic 45.0%
TTCCACCTATCAGAGCTGAA+AGG + chr4_2:53856168-53856187 None:intergenic 45.0%
! TGCATATGTGAGAGGCACAA+GGG + chr4_2:53856194-53856213 None:intergenic 45.0%
! ATGCATATGTGAGAGGCACA+AGG + chr4_2:53856195-53856214 None:intergenic 45.0%
TGGTTGTTCAACCTCGTACT+TGG - chr4_2:53856268-53856287 Msa0607140:CDS 45.0%
TCCCTAAACAACCAAGTACG+AGG + chr4_2:53856282-53856301 None:intergenic 45.0%
GGTTGCTGCTATAAGGACTT+TGG - chr4_2:53856324-53856343 Msa0607140:CDS 45.0%
GCGGGACTCATCTTAATAGT+AGG + chr4_2:53856490-53856509 None:intergenic 45.0%
!! AATAATTGAATAAAAAAATA+TGG + chr4_2:53853046-53853065 None:intergenic 5.0%
!!! TATATTAATTTATTTTCTTA+AGG - chr4_2:53853182-53853201 Msa0607140:intron 5.0%
!! TAATTTAGATATAAAAAAAA+TGG - chr4_2:53853438-53853457 Msa0607140:intron 5.0%
!!! AATTTTATTTTTATAAATTG+GGG + chr4_2:53853641-53853660 None:intergenic 5.0%
!! ATAACAAAAAAAAATAATAT+AGG + chr4_2:53854291-53854310 None:intergenic 5.0%
TAAACCCCCACTCTCTCCTA+CGG - chr4_2:53852202-53852221 Msa0607140:exon 50.0%
ATAACCGTAGGAGAGAGTGG+GGG + chr4_2:53852209-53852228 None:intergenic 50.0%
TCAAGCTCTCATGCTTCCTG+TGG - chr4_2:53852412-53852431 Msa0607140:CDS 50.0%
TGGCCTTTGCAACTCTTGGT+TGG - chr4_2:53852432-53852451 Msa0607140:CDS 50.0%
TGTCTAGCTATGAGCAAGGC+AGG - chr4_2:53853397-53853416 Msa0607140:intron 50.0%
AGGCAGACATTGCAAGGAAG+AGG + chr4_2:53854013-53854032 None:intergenic 50.0%
TTGCTTCATTGTCCCACCAC+CGG + chr4_2:53854599-53854618 None:intergenic 50.0%
CTCAATGGCTGCTGTCTCTT+TGG - chr4_2:53854744-53854763 Msa0607140:intron 50.0%
ATGGCTGCTGTCTCTTTGGT+AGG - chr4_2:53854748-53854767 Msa0607140:intron 50.0%
TGGCTGCTGTCTCTTTGGTA+GGG - chr4_2:53854749-53854768 Msa0607140:intron 50.0%
TCGAAGGAACCAATGCGTAG+AGG - chr4_2:53855647-53855666 Msa0607140:intron 50.0%
ATGGTCACTCCTCTACGCAT+TGG + chr4_2:53855659-53855678 None:intergenic 50.0%
! GTTTTTCCCCTCGTGATTGC+TGG - chr4_2:53855704-53855723 Msa0607140:intron 50.0%
! CCCTCGTGATTGCTGGATTT+TGG - chr4_2:53855711-53855730 Msa0607140:intron 50.0%
CCCAAAATCCAGCAATCACG+AGG + chr4_2:53855715-53855734 None:intergenic 50.0%
CCTATCAGAGCTGAAAGGCT+TGG + chr4_2:53856163-53856182 None:intergenic 50.0%
! CCAAGCCTTTCAGCTCTGAT+AGG - chr4_2:53856160-53856179 Msa0607140:CDS 50.0%
! AGCCTTTCAGCTCTGATAGG+TGG - chr4_2:53856163-53856182 Msa0607140:CDS 50.0%
CCAAGAGTTGCAAAGGCCAC+AGG + chr4_2:53852431-53852450 None:intergenic 55.0%
CCTGTGGCCTTTGCAACTCT+TGG - chr4_2:53852428-53852447 Msa0607140:CDS 55.0%
GGCTGCTGTCTCTTTGGTAG+GGG - chr4_2:53854750-53854769 Msa0607140:intron 55.0%
! GGTGTCACAAGAATCCACCG+TGG - chr4_2:53854861-53854880 Msa0607140:intron 55.0%
GTCACTGATCTTCACCACGG+TGG + chr4_2:53854878-53854897 None:intergenic 55.0%
TACAACCGCCGCATAGTCGT+TGG + chr4_2:53855102-53855121 None:intergenic 55.0%
CACGAGGGGAAAAACACACG+CGG + chr4_2:53855699-53855718 None:intergenic 55.0%
TGCAACGCGCACTCGCTGAG+CGG - chr4_2:53854658-53854677 Msa0607140:CDS 65.0%
ACTCGCTGAGCGGAGTCGAG+TGG - chr4_2:53854668-53854687 Msa0607140:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 53852038 53856565 53852038 ID=Msa0607140;Name=Msa0607140
chr4_2 mRNA 53852038 53856565 53852038 ID=Msa0607140-mRNA-1;Parent=Msa0607140;Name=Msa0607140-mRNA-1;_AED=0.08;_eAED=0.08;_QI=93|1|1|1|1|1|5|181|506
chr4_2 exon 53852038 53852704 53852038 ID=Msa0607140-mRNA-1:exon:13396;Parent=Msa0607140-mRNA-1
chr4_2 exon 53852855 53852986 53852855 ID=Msa0607140-mRNA-1:exon:13395;Parent=Msa0607140-mRNA-1
chr4_2 exon 53853640 53854085 53853640 ID=Msa0607140-mRNA-1:exon:13394;Parent=Msa0607140-mRNA-1
chr4_2 exon 53854568 53854701 53854568 ID=Msa0607140-mRNA-1:exon:13393;Parent=Msa0607140-mRNA-1
chr4_2 exon 53856150 53856565 53856150 ID=Msa0607140-mRNA-1:exon:13392;Parent=Msa0607140-mRNA-1
chr4_2 five_prime_UTR 53856473 53856565 53856473 ID=Msa0607140-mRNA-1:five_prime_utr;Parent=Msa0607140-mRNA-1
chr4_2 CDS 53856150 53856472 53856150 ID=Msa0607140-mRNA-1:cds;Parent=Msa0607140-mRNA-1
chr4_2 CDS 53854568 53854701 53854568 ID=Msa0607140-mRNA-1:cds;Parent=Msa0607140-mRNA-1
chr4_2 CDS 53853640 53854085 53853640 ID=Msa0607140-mRNA-1:cds;Parent=Msa0607140-mRNA-1
chr4_2 CDS 53852855 53852986 53852855 ID=Msa0607140-mRNA-1:cds;Parent=Msa0607140-mRNA-1
chr4_2 CDS 53852219 53852704 53852219 ID=Msa0607140-mRNA-1:cds;Parent=Msa0607140-mRNA-1
chr4_2 three_prime_UTR 53852038 53852218 53852038 ID=Msa0607140-mRNA-1:three_prime_utr;Parent=Msa0607140-mRNA-1
Gene Sequence

>Msa0607140

ATGGGACAAGTGAATGAAGCTGATTATATGAGATCAGAAGTGGCTCTTTTGCAATTTTCTGATGCCAATTTTAAACCCCCACTCTCTCCTACGGTTATACACATTCATGATGATCATCCAACTACTAGTTTTTCCTCTGAATCTGACCCTTCTTCACCAAGTGTCCAATTACCAGACCAACAAAATCAACATCCAAAAGATGAGTGGCTTCCTATCACAGAATCCAGAAATGGTAATGCCTATTTTGCAACTTATCATATTCTTAATTCCAACATTGGATTTCAAGCTCTCATGCTTCCTGTGGCCTTTGCAACTCTTGGTTGGGCATGGGGTAGTGTGTGTTTGTCAATAGCATTCATTTGGCAACTTTATACCATATTTCTCCTTGTTGAGCTTCATGAATCTACTTCTGGAAAACGTCACAGTAGATACCTCTTCCTTGCAATGTCTGCCTTTGGTGCAAGGTTAGGAAAAATAGCAGCATTATTTCCAGTAATGTATCTATCAGGAGGCAGCTGTGTGATGTTTATAATCACCGGTGGTGGGACAATGAAGCAATTATTCAAGATTCTTTGCGAAAACGATGATGGGACGATGTGCAACGCGCACTCGCTGAGCGGAGTCGAGTGGTTCTTAGTGTTTACTTGTTTGGCAATTCTTATTGCTCAGTTGCCTAATCTTAACTCAATGGCTGCTGTCTCTTTGGTAGGGGCTGCTGCCTCTATAAGTTACTGCACACTTTTTTGGTCACTTTCTGTTAAGAAAGGTAGGCCAATGGGTGTGTCCTACAATACTACATTGGTGTCACAAGAATCCACCGTGGTGAAGATCAGTGACATTTTGAATGCTATTGGAATTATTGTGCTAGCTTTCAGAGGTCACAATCTTGTGCTTGAAATTCAGGGGACTATGCCATCAAATTCCAAAAAAACATCGAAGGAACCAATGCGTAGAGGAGTGACCATTGCGTATATACTCATTGCCGCGTGTGTTTTTCCCCTCGTGATTGCTGGATTTTGGGCATATGGAAATAAGATACCAGATAAAGGATTGTTAACGGCGTTCCCACAATTCCACAAAGAACAAGCAACAAAATTCTCAATCGGCGCACTTTATGTTTGGGTGATACTACATTGTTTAACAAGCTTCCAAGTCTATGCAATGCCTGTTTTCGACAACTTGGAGCTAAGATACACAACCATAAAGAATAAAAAATGTCCAAGATGGTTGAGAACATGCTTTCGTTTCTTCTTTGGAGGGTTCACATTTTTTATAGCGGTAACATTCCCTTTCTTACCAAGCCTTTCAGCTCTGATAGGTGGAATGACCCTTGTGCCTCTCACATATGCATATCCTTGTTTCATGTGGTTATCTCTTAAGAAACCTCGTAAAAATGGTGTAATCTGGTTGTTCAACCTCGTACTTGGTTGTTTAGGGATGCTTTTAAGTGTTCTTTTGGTGGTTGCTGCTATAAGGACTTTGGCTGATAAAGGGTTACATGCTAACTTCTTCAAACCATAA
Protein sequence

>Msa0607140

MGQVNEADYMRSEVALLQFSDANFKPPLSPTVIHIHDDHPTTSFSSESDPSSPSVQLPDQQNQHPKDEWLPITESRNGNAYFATYHILNSNIGFQALMLPVAFATLGWAWGSVCLSIAFIWQLYTIFLLVELHESTSGKRHSRYLFLAMSAFGARLGKIAALFPVMYLSGGSCVMFIITGGGTMKQLFKILCENDDGTMCNAHSLSGVEWFLVFTCLAILIAQLPNLNSMAAVSLVGAAASISYCTLFWSLSVKKGRPMGVSYNTTLVSQESTVVKISDILNAIGIIVLAFRGHNLVLEIQGTMPSNSKKTSKEPMRRGVTIAYILIAACVFPLVIAGFWAYGNKIPDKGLLTAFPQFHKEQATKFSIGALYVWVILHCLTSFQVYAMPVFDNLELRYTTIKNKKCPRWLRTCFRFFFGGFTFFIAVTFPFLPSLSALIGGMTLVPLTYAYPCFMWLSLKKPRKNGVIWLFNLVLGCLGMLLSVLLVVAAIRTLADKGLHANFFKP*