Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0608450 | XP_003607521.1 | 86.735 | 588 | 11 | 3 | 4 | 546 | 3 | 568 | 0.0 | 999 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0608450 | sp|Q94KB7|MLO6_ARATH | 37.907 | 583 | 266 | 11 | 1 | 500 | 1 | 570 | 7.99e-131 | 396 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0608450 | Msa0648950 | 0.814778 | 1.295295e-51 | -8.615850e-47 |
Msa0608450 | Msa0691460 | 0.851320 | 9.584925e-61 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0608450 | MtrunA17_Chr4g0040611 | 86.735 | 588 | 11 | 3 | 4 | 546 | 3 | 568 | 0.0 | 999 |
Msa0608450 | MtrunA17_Chr6g0462051 | 39.609 | 563 | 257 | 7 | 7 | 494 | 8 | 562 | 7.58e-135 | 403 |
Msa0608450 | MtrunA17_Chr2g0326301 | 41.860 | 473 | 203 | 5 | 1 | 402 | 1 | 472 | 2.31e-127 | 385 |
Msa0608450 | MtrunA17_Chr3g0144171 | 34.066 | 546 | 283 | 8 | 7 | 481 | 8 | 547 | 2.53e-110 | 340 |
Msa0608450 | MtrunA17_Chr5g0407381 | 35.965 | 456 | 223 | 6 | 8 | 401 | 28 | 476 | 2.19e-97 | 306 |
Msa0608450 | MtrunA17_Chr8g0370181 | 36.093 | 471 | 240 | 5 | 5 | 416 | 35 | 503 | 1.06e-95 | 303 |
Msa0608450 | MtrunA17_Chr8g0337941 | 38.275 | 371 | 219 | 5 | 56 | 421 | 135 | 500 | 6.06e-87 | 278 |
Msa0608450 | MtrunA17_Chr3g0144201 | 34.554 | 437 | 240 | 6 | 58 | 454 | 136 | 566 | 3.32e-84 | 272 |
Msa0608450 | MtrunA17_Chr8g0337931 | 38.636 | 352 | 200 | 4 | 70 | 410 | 135 | 481 | 1.29e-82 | 266 |
Msa0608450 | MtrunA17_Chr3g0145831 | 38.994 | 318 | 190 | 3 | 70 | 385 | 142 | 457 | 5.19e-81 | 262 |
Msa0608450 | MtrunA17_Chr2g0291441 | 37.471 | 435 | 188 | 11 | 1 | 368 | 1 | 418 | 5.99e-77 | 251 |
Msa0608450 | MtrunA17_Chr2g0317801 | 31.648 | 455 | 229 | 11 | 6 | 391 | 7 | 448 | 6.13e-68 | 229 |
Msa0608450 | MtrunA17_Chr2g0277471 | 31.738 | 397 | 248 | 7 | 74 | 455 | 135 | 523 | 4.41e-65 | 221 |
Msa0608450 | MtrunA17_Chr5g0405641 | 28.052 | 385 | 201 | 9 | 6 | 320 | 8 | 386 | 6.41e-38 | 144 |
Msa0608450 | MtrunA17_Chr5g0405651 | 40.000 | 60 | 36 | 0 | 337 | 396 | 7 | 66 | 2.65e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0608450 | AT1G61560.1 | 37.907 | 583 | 266 | 11 | 1 | 500 | 1 | 570 | 8.12e-132 | 396 |
Msa0608450 | AT2G39200.1 | 40.283 | 494 | 222 | 5 | 1 | 425 | 1 | 490 | 8.27e-130 | 391 |
Msa0608450 | AT1G61560.2 | 43.468 | 444 | 230 | 8 | 66 | 500 | 77 | 508 | 5.83e-125 | 377 |
Msa0608450 | AT1G61560.3 | 43.468 | 444 | 230 | 8 | 66 | 500 | 77 | 508 | 5.83e-125 | 377 |
Msa0608450 | AT1G61560.4 | 38.214 | 560 | 247 | 12 | 1 | 475 | 1 | 546 | 8.58e-125 | 378 |
Msa0608450 | AT1G11310.1 | 38.735 | 506 | 233 | 6 | 1 | 429 | 1 | 506 | 4.32e-121 | 368 |
Msa0608450 | AT1G61560.10 | 40.724 | 442 | 185 | 4 | 1 | 368 | 1 | 439 | 2.91e-118 | 357 |
Msa0608450 | AT1G11310.3 | 46.260 | 361 | 191 | 2 | 72 | 429 | 84 | 444 | 8.95e-117 | 355 |
Msa0608450 | AT1G61560.7 | 38.995 | 418 | 178 | 4 | 1 | 344 | 1 | 415 | 6.58e-105 | 321 |
Msa0608450 | AT1G61560.9 | 38.995 | 418 | 178 | 4 | 1 | 344 | 1 | 415 | 6.58e-105 | 321 |
Msa0608450 | AT1G11310.2 | 37.799 | 418 | 186 | 3 | 1 | 344 | 1 | 418 | 1.02e-98 | 305 |
Msa0608450 | AT2G33670.1 | 35.062 | 482 | 252 | 6 | 8 | 435 | 15 | 489 | 1.10e-97 | 305 |
Msa0608450 | AT2G17480.1 | 32.836 | 536 | 280 | 8 | 7 | 470 | 38 | 565 | 2.44e-97 | 307 |
Msa0608450 | AT1G61560.6 | 38.142 | 409 | 174 | 5 | 1 | 335 | 1 | 404 | 2.02e-95 | 296 |
Msa0608450 | AT1G61560.8 | 38.142 | 409 | 174 | 5 | 1 | 335 | 1 | 404 | 2.02e-95 | 296 |
Msa0608450 | AT1G61560.5 | 38.142 | 409 | 174 | 5 | 1 | 335 | 1 | 404 | 2.02e-95 | 296 |
Msa0608450 | AT3G45290.1 | 35.147 | 441 | 227 | 4 | 5 | 390 | 14 | 450 | 2.75e-92 | 292 |
Msa0608450 | AT5G65970.1 | 35.431 | 429 | 228 | 3 | 5 | 386 | 31 | 457 | 2.33e-91 | 291 |
Msa0608450 | AT2G17430.1 | 34.763 | 443 | 235 | 4 | 8 | 398 | 31 | 471 | 5.45e-90 | 287 |
Msa0608450 | AT1G42560.1 | 42.271 | 317 | 180 | 2 | 75 | 391 | 143 | 456 | 1.21e-89 | 283 |
Msa0608450 | AT2G44110.1 | 32.568 | 479 | 258 | 7 | 3 | 421 | 1 | 474 | 1.84e-86 | 276 |
Msa0608450 | AT2G44110.2 | 32.988 | 482 | 253 | 9 | 3 | 421 | 1 | 475 | 3.53e-85 | 273 |
Msa0608450 | AT4G02600.2 | 37.921 | 356 | 211 | 5 | 40 | 391 | 113 | 462 | 4.08e-84 | 271 |
Msa0608450 | AT4G02600.1 | 37.921 | 356 | 211 | 5 | 40 | 391 | 113 | 462 | 4.08e-84 | 271 |
Msa0608450 | AT4G24250.1 | 33.970 | 471 | 244 | 8 | 4 | 410 | 3 | 470 | 1.18e-79 | 258 |
Msa0608450 | AT1G26700.1 | 30.870 | 460 | 237 | 9 | 4 | 391 | 6 | 456 | 6.84e-68 | 229 |
Msa0608450 | AT1G26700.2 | 30.870 | 460 | 237 | 9 | 4 | 391 | 6 | 456 | 6.84e-68 | 229 |
Msa0608450 | AT1G11000.1 | 29.957 | 464 | 257 | 8 | 6 | 407 | 7 | 464 | 3.35e-66 | 225 |
Msa0608450 | AT1G11000.3 | 29.957 | 464 | 257 | 8 | 6 | 407 | 7 | 464 | 3.35e-66 | 225 |
Msa0608450 | AT5G53760.2 | 29.258 | 458 | 246 | 7 | 4 | 391 | 12 | 461 | 8.89e-65 | 221 |
Msa0608450 | AT5G53760.1 | 29.258 | 458 | 246 | 7 | 4 | 391 | 12 | 461 | 8.89e-65 | 221 |
Msa0608450 | AT4G24250.2 | 32.921 | 404 | 205 | 7 | 4 | 344 | 3 | 403 | 1.49e-61 | 208 |
Msa0608450 | AT5G65970.2 | 31.765 | 340 | 183 | 3 | 5 | 297 | 31 | 368 | 9.12e-57 | 197 |
Msa0608450 | AT1G42560.2 | 38.723 | 235 | 141 | 2 | 75 | 309 | 143 | 374 | 8.11e-52 | 182 |
Msa0608450 | AT1G11000.2 | 28.678 | 401 | 219 | 7 | 6 | 344 | 7 | 402 | 4.75e-50 | 178 |
Find 105 sgRNAs with CRISPR-Local
Find 328 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAAGGATGATTTGGATTAAA+TGG | 0.181806 | 4_2:+55575766 | None:intergenic |
AAATATCTTAATCTCCATTT+TGG | 0.201941 | 4_2:-55579495 | Msa0608450:CDS |
AACTGAGTTGTTGTTGCTTT+TGG | 0.224442 | 4_2:+55574876 | None:intergenic |
TTTACCACAAGTGGAATAAA+TGG | 0.270886 | 4_2:+55576053 | None:intergenic |
AGATCTTTGTTCTCCTTCTA+TGG | 0.274984 | 4_2:+55580710 | None:intergenic |
CCAATGTTTGACTTATATAC+TGG | 0.303042 | 4_2:+55577913 | None:intergenic |
TTGAAGATTGCTCTTCTTGC+GGG | 0.303473 | 4_2:-55575918 | Msa0608450:intron |
GATATGAAACACAGCCAAAA+TGG | 0.307125 | 4_2:+55579481 | None:intergenic |
TGATCATGCAAGAAAAGAAT+TGG | 0.326385 | 4_2:-55580045 | Msa0608450:CDS |
AATAAACAACAGTATGAATT+TGG | 0.330082 | 4_2:-55575508 | Msa0608450:intron |
TTGAGAAGGTTGTTGGAATC+AGG | 0.333178 | 4_2:-55576579 | Msa0608450:intron |
GTACCTGGATAAGGATGATT+TGG | 0.341935 | 4_2:+55575757 | None:intergenic |
GATTACTTTGCTCTACGAAA+TGG | 0.343568 | 4_2:-55577029 | Msa0608450:CDS |
AGGATGTAGCAAATTCTTTC+CGG | 0.347163 | 4_2:-55580097 | Msa0608450:CDS |
ATTAAATGGAGAAGCCATTC+AGG | 0.350449 | 4_2:+55575780 | None:intergenic |
TTCCTCAACAGTCTTTATTT+CGG | 0.358468 | 4_2:+55574579 | None:intergenic |
CTGAGTGACAAGTGTGTAAA+GGG | 0.371791 | 4_2:+55575390 | None:intergenic |
CTGTGACTGCAGGGCAAGGT+AGG | 0.374978 | 4_2:-55579548 | Msa0608450:intron |
CTAGTCACTACAATTACTTT+TGG | 0.384195 | 4_2:+55574694 | None:intergenic |
GAGTATGCACAATAATAATA+AGG | 0.384959 | 4_2:-55574800 | Msa0608450:CDS |
TGAAGGAGGTCTCCACAAAT+TGG | 0.400561 | 4_2:-55580619 | Msa0608450:CDS |
GTTATATCATTGCTCATTGA+AGG | 0.402100 | 4_2:-55580636 | Msa0608450:CDS |
AAGACTGTTGAGGAAAATAA+TGG | 0.404778 | 4_2:-55574571 | Msa0608450:CDS |
TAAACCCAATGCAATCCTTA+TGG | 0.406086 | 4_2:+55575447 | None:intergenic |
TAATTACCTCAGCCAATTTG+TGG | 0.407648 | 4_2:+55580607 | None:intergenic |
CCACTTCCAGAGTTGTTACC+AGG | 0.412305 | 4_2:+55574664 | None:intergenic |
AAACCTCTCATGGCCATAGA+AGG | 0.415078 | 4_2:-55580723 | None:intergenic |
GATCTCCTTTGGAGTTTATG+TGG | 0.416490 | 4_2:-55574515 | Msa0608450:CDS |
GGCTTTGCTTGCAACTATCT+AGG | 0.416507 | 4_2:+55575862 | None:intergenic |
AAACTGATACAGCCCATGTT+GGG | 0.422274 | 4_2:+55580676 | None:intergenic |
ATTACTTTGCTCTACGAAAT+GGG | 0.431916 | 4_2:-55577028 | Msa0608450:CDS |
AACAGTCTTTATTTCGGAAG+TGG | 0.434111 | 4_2:+55574585 | None:intergenic |
GAGTATGCTCAACAACAATA+AGG | 0.436327 | 4_2:-55574740 | Msa0608450:CDS |
TGTACATTAACAATGTGTCT+TGG | 0.440032 | 4_2:-55579452 | Msa0608450:CDS |
TATGACGGTGAGATCTCCTT+TGG | 0.443120 | 4_2:-55574526 | Msa0608450:CDS |
GTACATTAACAATGTGTCTT+GGG | 0.457251 | 4_2:-55579451 | Msa0608450:CDS |
TTTGGTTTCATAAACCTGAA+TGG | 0.459950 | 4_2:-55575794 | Msa0608450:CDS |
CATTGCCATAAGGATTGCAT+TGG | 0.474727 | 4_2:-55575452 | Msa0608450:CDS |
AGATTAAGATATTTAGCTCC+AGG | 0.480755 | 4_2:+55579504 | None:intergenic |
GGTAGTAGTAGCAGAGGCAT+AGG | 0.481563 | 4_2:-55574493 | Msa0608450:CDS |
GATCATGCAAGAAAAGAATT+GGG | 0.482157 | 4_2:-55580044 | Msa0608450:CDS |
ATCTTTCACAGATGAGAAGA+TGG | 0.492186 | 4_2:-55578147 | Msa0608450:intron |
AATCCAAATCATCCTTATCC+AGG | 0.494454 | 4_2:-55575760 | Msa0608450:intron |
ATCTCCTTTGGAGTTTATGT+GGG | 0.503670 | 4_2:-55574514 | Msa0608450:CDS |
CCAGTATATAAGTCAAACAT+TGG | 0.504115 | 4_2:-55577913 | Msa0608450:CDS |
AATTTCAAGTGAAGGAATCC+TGG | 0.504758 | 4_2:-55579522 | Msa0608450:CDS |
TTCATATTCCTTAGCGCACA+TGG | 0.505852 | 4_2:-55576272 | Msa0608450:intron |
ATTGCCATAAGGATTGCATT+GGG | 0.506123 | 4_2:-55575451 | Msa0608450:CDS |
CCTGGTAACAACTCTGGAAG+TGG | 0.506889 | 4_2:-55574664 | Msa0608450:CDS |
AGTATGGTTCCTTTGATCAC+AGG | 0.507864 | 4_2:+55575840 | None:intergenic |
ATTGAAGATTGCTCTTCTTG+CGG | 0.519046 | 4_2:-55575919 | Msa0608450:intron |
TCTCTATTGAAGCAAGACCT+TGG | 0.520717 | 4_2:+55575484 | None:intergenic |
GATATGAAATTTACCACAAG+TGG | 0.523559 | 4_2:+55576044 | None:intergenic |
CCTTTACACACTTGTCACTC+AGG | 0.526042 | 4_2:-55575389 | Msa0608450:intron |
CCTGAGTGACAAGTGTGTAA+AGG | 0.527556 | 4_2:+55575389 | None:intergenic |
AAAGATTCTGAGTACTTAGC+AGG | 0.531068 | 4_2:-55580068 | Msa0608450:CDS |
AAAATCTTCATCATAAGTGC+GGG | 0.531685 | 4_2:+55576600 | None:intergenic |
ATAATTATTCTCCCTTGCTG+TGG | 0.535167 | 4_2:-55577863 | Msa0608450:CDS |
GTAGTAGTAGCAGAGGCATA+GGG | 0.538522 | 4_2:-55574492 | Msa0608450:CDS |
ACTCAGAATCTTTACATGGC+CGG | 0.539479 | 4_2:+55580078 | None:intergenic |
TGTGACTGCAGGGCAAGGTA+GGG | 0.539627 | 4_2:-55579547 | Msa0608450:intron |
GCTTCCATTTATTCCACTTG+TGG | 0.539948 | 4_2:-55576057 | Msa0608450:intron |
CCTCCTCCTGGTAACAACTC+TGG | 0.540953 | 4_2:-55574670 | Msa0608450:CDS |
CAAACTGATACAGCCCATGT+TGG | 0.543473 | 4_2:+55580675 | None:intergenic |
CAGTATATAAGTCAAACATT+GGG | 0.546043 | 4_2:-55577912 | Msa0608450:CDS |
CTCTTGAAGAAACCCCAACA+TGG | 0.546661 | 4_2:-55580689 | Msa0608450:CDS |
GATGGGGTCTAACATGAGAA+AGG | 0.555306 | 4_2:-55574965 | Msa0608450:CDS |
CTCACCGTCATAGATTCCTC+TGG | 0.557735 | 4_2:+55574537 | None:intergenic |
ATGTCATACCATGTGCGCTA+AGG | 0.562400 | 4_2:+55576264 | None:intergenic |
GTAGTGACTAGTCCTCCTCC+TGG | 0.570950 | 4_2:-55574682 | Msa0608450:CDS |
GTATGGTTCCTTTGATCACA+GGG | 0.572250 | 4_2:+55575841 | None:intergenic |
GAACAAGTGAGAATTCAGTA+AGG | 0.572786 | 4_2:-55574840 | Msa0608450:CDS |
CCAGAGTTGTTACCAGGAGG+AGG | 0.576377 | 4_2:+55574670 | None:intergenic |
AAGCAAAGCCCTGTGATCAA+AGG | 0.576388 | 4_2:-55575849 | Msa0608450:CDS |
CAAAATCTTCATCATAAGTG+CGG | 0.578283 | 4_2:+55576599 | None:intergenic |
TTCACTTACAATCCACAGCA+AGG | 0.584522 | 4_2:+55577851 | None:intergenic |
CAACTCTGGAAGTGGAGAAG+AGG | 0.584996 | 4_2:-55574656 | Msa0608450:CDS |
TATATAAGTCAAACATTGGG+TGG | 0.585326 | 4_2:-55577909 | Msa0608450:CDS |
TTGCTTCACAATAGTTCTCG+TGG | 0.588634 | 4_2:+55580018 | None:intergenic |
TGAAGATTGCTCTTCTTGCG+GGG | 0.590863 | 4_2:-55575917 | Msa0608450:intron |
GTAGGGCTAATTTCAAGTGA+AGG | 0.595494 | 4_2:-55579530 | Msa0608450:CDS |
ACATTGTTAATGTACAGTAA+AGG | 0.600246 | 4_2:+55579459 | None:intergenic |
AACAGTATGAATTTGGTCCA+AGG | 0.601579 | 4_2:-55575501 | Msa0608450:intron |
ATTAACAATGTGTCTTGGGA+AGG | 0.603269 | 4_2:-55579447 | Msa0608450:CDS |
AACTGATACAGCCCATGTTG+GGG | 0.610102 | 4_2:+55580677 | None:intergenic |
AGGTCTCCACAAATTGGCTG+AGG | 0.613365 | 4_2:-55580613 | Msa0608450:intron |
TATGTGGGTAGTAGTAGCAG+AGG | 0.614979 | 4_2:-55574499 | Msa0608450:CDS |
ATATCATTGCTCATTGAAGG+AGG | 0.616291 | 4_2:-55580633 | Msa0608450:CDS |
CAATGAGCAATGATATAACA+AGG | 0.619401 | 4_2:+55580640 | None:intergenic |
TCACTTACAATCCACAGCAA+GGG | 0.621969 | 4_2:+55577852 | None:intergenic |
TCTTGAAGAAACCCCAACAT+GGG | 0.624163 | 4_2:-55580688 | Msa0608450:CDS |
TTCACGGACCATGTTACACA+AGG | 0.625229 | 4_2:-55574937 | Msa0608450:CDS |
TTCCGAAATAAAGACTGTTG+AGG | 0.625259 | 4_2:-55574581 | Msa0608450:CDS |
TAGTAGTAGCAGAGGCATAG+GGG | 0.625440 | 4_2:-55574491 | Msa0608450:CDS |
CGAGAACTATTGTGAAGCAA+AGG | 0.626303 | 4_2:-55580015 | Msa0608450:intron |
TATGCACAATAATAATAAGG+TGG | 0.626838 | 4_2:-55574797 | Msa0608450:CDS |
AAGTACTCAGAATCTTTACA+TGG | 0.627255 | 4_2:+55580074 | None:intergenic |
CTTGAATATCAGATAGACAA+TGG | 0.634126 | 4_2:-55578097 | Msa0608450:intron |
TATGCTCAACAACAATAAGG+TGG | 0.634436 | 4_2:-55574737 | Msa0608450:CDS |
ACTACCCACATAAACTCCAA+AGG | 0.636649 | 4_2:+55574510 | None:intergenic |
AATGTGTCTTGGGAAGGCTA+AGG | 0.641200 | 4_2:-55579441 | Msa0608450:intron |
ATCACCAGAGGAATCTATGA+CGG | 0.655023 | 4_2:-55574541 | Msa0608450:CDS |
CTTCCAGAGTTGTTACCAGG+AGG | 0.684826 | 4_2:+55574667 | None:intergenic |
AATGGTAAGATCATCACCAG+AGG | 0.694073 | 4_2:-55574553 | Msa0608450:CDS |
TGAGTGACAAGTGTGTAAAG+GGG | 0.718362 | 4_2:+55575391 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GATTTTTTTAATATGTAAAT+CGG | - | chr4_2:55575332-55575351 | Msa0608450:intron | 10.0% |
!!! | CAAAAATAGTTTTATATTTT+TGG | + | chr4_2:55576034-55576053 | None:intergenic | 10.0% |
!!! | ACAAAATTTTGAATATTTAT+AGG | - | chr4_2:55576412-55576431 | Msa0608450:intron | 10.0% |
!!! | CAAAATTTTGAATATTTATA+GGG | - | chr4_2:55576413-55576432 | Msa0608450:intron | 10.0% |
!!! | TTTTGATAATATAAAAAGTA+GGG | + | chr4_2:55576456-55576475 | None:intergenic | 10.0% |
!!! | ATTTTGATAATATAAAAAGT+AGG | + | chr4_2:55576457-55576476 | None:intergenic | 10.0% |
!!! | TATTTTTGAACTTTTTAAAT+TGG | + | chr4_2:55577649-55577668 | None:intergenic | 10.0% |
!! | TTTAAAAAGTTCAAAAATAT+AGG | - | chr4_2:55577650-55577669 | Msa0608450:intron | 10.0% |
!! | TTAAAAAGTTCAAAAATATA+GGG | - | chr4_2:55577651-55577670 | Msa0608450:intron | 10.0% |
!!! | TATATGATAGAATTTTATTT+AGG | + | chr4_2:55577883-55577902 | None:intergenic | 10.0% |
!! | GTACAATTTATTATATTTAA+AGG | - | chr4_2:55579159-55579178 | Msa0608450:intron | 10.0% |
!! | ATTACTAATGAATATTATAT+TGG | - | chr4_2:55579561-55579580 | Msa0608450:intron | 10.0% |
!!! | ATTTAAAATAAAAAGTGATG+AGG | - | chr4_2:55574846-55574865 | Msa0608450:CDS | 15.0% |
!! | AAATAAATATGACTAAACTA+CGG | + | chr4_2:55575306-55575325 | None:intergenic | 15.0% |
!! | ATGTTAGTTAATAAATTGTT+AGG | - | chr4_2:55575427-55575446 | Msa0608450:CDS | 15.0% |
!!! | TACTTTTAGTTTTTTTTTAG+TGG | + | chr4_2:55575996-55576015 | None:intergenic | 15.0% |
!! | GAAGAAATAAAATAATTGAT+GGG | + | chr4_2:55576720-55576739 | None:intergenic | 15.0% |
!! | TGAAGAAATAAAATAATTGA+TGG | + | chr4_2:55576721-55576740 | None:intergenic | 15.0% |
!!! | AATTATTTTATTTCTTCAGT+TGG | - | chr4_2:55576723-55576742 | Msa0608450:intron | 15.0% |
!!! | ACATGATTTTATATATCATA+TGG | - | chr4_2:55576913-55576932 | Msa0608450:intron | 15.0% |
!!! | TAATGAAATTACTAGTATTT+TGG | - | chr4_2:55577524-55577543 | Msa0608450:intron | 15.0% |
!!! | AATGAAATTACTAGTATTTT+GGG | - | chr4_2:55577525-55577544 | Msa0608450:intron | 15.0% |
!!! | ATTTTTAAAACTTTGTAAGT+TGG | + | chr4_2:55577619-55577638 | None:intergenic | 15.0% |
!!! | TTCTTTCAAAATTTTCAAAA+TGG | + | chr4_2:55577678-55577697 | None:intergenic | 15.0% |
!!! | AATTTGTTAAAGCTAAATTT+AGG | + | chr4_2:55577781-55577800 | None:intergenic | 15.0% |
!! | TTCTATCATATAATATTTGA+AGG | - | chr4_2:55577891-55577910 | Msa0608450:CDS | 15.0% |
!! | TCTATCATATAATATTTGAA+GGG | - | chr4_2:55577892-55577911 | Msa0608450:CDS | 15.0% |
!!! | TTAGGAAATGTAATTTTTTT+CGG | + | chr4_2:55577928-55577947 | None:intergenic | 15.0% |
!! | ACTGTCAAATTTATTATTTA+TGG | - | chr4_2:55578255-55578274 | Msa0608450:intron | 15.0% |
!! | AAATTACATGTATTTATGAT+AGG | + | chr4_2:55578610-55578629 | None:intergenic | 15.0% |
!!! | CTTATAAGTTTATTTTTTCA+TGG | - | chr4_2:55578955-55578974 | Msa0608450:intron | 15.0% |
!! | AGAATCATCATATTTAAAAA+AGG | + | chr4_2:55579615-55579634 | None:intergenic | 15.0% |
!! | AATTAGTTGAATATTGTTTA+AGG | - | chr4_2:55579818-55579837 | Msa0608450:intron | 15.0% |
!! | AAAATTATTTCAATCAAAGA+TGG | - | chr4_2:55580025-55580044 | Msa0608450:CDS | 15.0% |
!! | AATAAGAAAAGAAAATCCAT+GGG | - | chr4_2:55574741-55574760 | Msa0608450:CDS | 20.0% |
!!! | AATGATTAGCTTAAATAACT+TGG | - | chr4_2:55574937-55574956 | Msa0608450:CDS | 20.0% |
!! | AAAATAGAAATGATGAAACT+AGG | - | chr4_2:55574973-55574992 | Msa0608450:intron | 20.0% |
!! | TATAAAAAAAACAACAGACA+AGG | + | chr4_2:55575398-55575417 | None:intergenic | 20.0% |
!!! | AAATATCTTAATCTCCATTT+TGG | - | chr4_2:55575657-55575676 | Msa0608450:intron | 20.0% |
!!! | TCATATGTAAAAGTATTCAT+TGG | - | chr4_2:55575910-55575929 | Msa0608450:CDS | 20.0% |
!!! | TTTTTTTTTAGTGGTACTTT+TGG | + | chr4_2:55575987-55576006 | None:intergenic | 20.0% |
!! | CAAAACTGTGAATATTTATA+GGG | + | chr4_2:55576194-55576213 | None:intergenic | 20.0% |
!! | ACAAAACTGTGAATATTTAT+AGG | + | chr4_2:55576195-55576214 | None:intergenic | 20.0% |
!!! | AAGTGTGATTTTATTTTGTA+GGG | + | chr4_2:55576382-55576401 | None:intergenic | 20.0% |
!!! | AAAGTGTGATTTTATTTTGT+AGG | + | chr4_2:55576381-55576400 | None:intergenic | 20.0% |
!!! | GTTGATGGAAAAATTTTATA+AGG | - | chr4_2:55576291-55576310 | Msa0608450:CDS | 20.0% |
!!! | ATGTTGATGGAAAATTTTAT+AGG | - | chr4_2:55576352-55576371 | Msa0608450:intron | 20.0% |
!!! | TGTTGATGGAAAATTTTATA+GGG | - | chr4_2:55576353-55576372 | Msa0608450:intron | 20.0% |
!!! | AAGTGTGATTTTATTTTGTA+AGG | - | chr4_2:55576382-55576401 | Msa0608450:intron | 20.0% |
!! | AAAAAGGAAAAGAAATTGAT+AGG | + | chr4_2:55576688-55576707 | None:intergenic | 20.0% |
!!! | CATATTATCAATTGATTTTG+TGG | + | chr4_2:55576776-55576795 | None:intergenic | 20.0% |
!!! | ATATCTATTAAAAAGTACTG+TGG | - | chr4_2:55576942-55576961 | Msa0608450:intron | 20.0% |
!!! | TATCTATTAAAAAGTACTGT+GGG | - | chr4_2:55576943-55576962 | Msa0608450:intron | 20.0% |
!! | TAATAACACATCAAAGATTA+AGG | + | chr4_2:55577084-55577103 | None:intergenic | 20.0% |
!!! | AAACATGAAATATTTAGAGT+AGG | - | chr4_2:55577349-55577368 | Msa0608450:intron | 20.0% |
!!! | TTGAGGTAATTTATTTTTTG+AGG | - | chr4_2:55577390-55577409 | Msa0608450:intron | 20.0% |
!!! | TGAGGTAATTTATTTTTTGA+GGG | - | chr4_2:55577391-55577410 | Msa0608450:intron | 20.0% |
!! | TCTACATAAATTTCATTCTT+CGG | - | chr4_2:55577427-55577446 | Msa0608450:intron | 20.0% |
!! | CATTAGAATTCCTTAAATTT+AGG | + | chr4_2:55577509-55577528 | None:intergenic | 20.0% |
!! | ATTTGACATTCACATTATAT+AGG | - | chr4_2:55577710-55577729 | Msa0608450:intron | 20.0% |
!! | ATTTCAAATTCCTAGATTTA+TGG | - | chr4_2:55577743-55577762 | Msa0608450:intron | 20.0% |
!!! | TTTAGGTAGTGTAATTTTAA+AGG | + | chr4_2:55577866-55577885 | None:intergenic | 20.0% |
!!! | AATTCAACGTTTTCAATTTT+AGG | + | chr4_2:55577946-55577965 | None:intergenic | 20.0% |
!!! | GTAAAGCATTTGATATTATA+TGG | + | chr4_2:55578011-55578030 | None:intergenic | 20.0% |
!!! | TTTATGGTAGTTTTAAATTG+TGG | - | chr4_2:55578271-55578290 | Msa0608450:intron | 20.0% |
!! | TTTGATACTGTAACAAAATA+TGG | - | chr4_2:55578312-55578331 | Msa0608450:intron | 20.0% |
!!! | CCACAATTTAAATTTTTTAG+AGG | + | chr4_2:55578374-55578393 | None:intergenic | 20.0% |
!!! | CCTCTAAAAAATTTAAATTG+TGG | - | chr4_2:55578371-55578390 | Msa0608450:intron | 20.0% |
!! | ACTTATAAGTAAAATAGCAA+GGG | + | chr4_2:55578944-55578963 | None:intergenic | 20.0% |
!! | AACTTATAAGTAAAATAGCA+AGG | + | chr4_2:55578945-55578964 | None:intergenic | 20.0% |
!! | AATAAACAACAGTATGAATT+TGG | - | chr4_2:55579644-55579663 | Msa0608450:intron | 20.0% |
!! | TTTAAACTCTAAATTACTAG+CGG | + | chr4_2:55579981-55580000 | None:intergenic | 20.0% |
!! | ATGTTAATACTCTTCAAATT+AGG | + | chr4_2:55580078-55580097 | None:intergenic | 20.0% |
!!! | AATTTGAAGAGTATTAACAT+TGG | - | chr4_2:55580078-55580097 | Msa0608450:CDS | 20.0% |
!! | TCTAAAAAATTGGCATAAAA+AGG | - | chr4_2:55580238-55580257 | Msa0608450:intron | 20.0% |
! | GCATTTATGAAAAAACTTGT+TGG | - | chr4_2:55574597-55574616 | Msa0608450:CDS | 25.0% |
! | TTCTTATTCTTCAAAAACTG+AGG | + | chr4_2:55574729-55574748 | None:intergenic | 25.0% |
! | GAATAAGAAAAGAAAATCCA+TGG | - | chr4_2:55574740-55574759 | Msa0608450:CDS | 25.0% |
! | ATAAGAAAAGAAAATCCATG+GGG | - | chr4_2:55574742-55574761 | Msa0608450:CDS | 25.0% |
!! | TTTTAAATTTGCAACTAACG+AGG | - | chr4_2:55574810-55574829 | Msa0608450:CDS | 25.0% |
! | TTTAAATTTGCAACTAACGA+GGG | - | chr4_2:55574811-55574830 | Msa0608450:CDS | 25.0% |
!! | ATTTATAAAAGCCTTTGAGA+AGG | + | chr4_2:55575219-55575238 | None:intergenic | 25.0% |
!! | CTTTTCAACGATGTATAATT+CGG | + | chr4_2:55575492-55575511 | None:intergenic | 25.0% |
! | ACATTGTTAATGTACAGTAA+AGG | + | chr4_2:55575696-55575715 | None:intergenic | 25.0% |
!! | ACATTTTCCTTAAGCATTTT+AGG | - | chr4_2:55576258-55576277 | Msa0608450:intron | 25.0% |
!! | CATTTTCCTTAAGCATTTTA+GGG | - | chr4_2:55576259-55576278 | Msa0608450:intron | 25.0% |
!! | ATGCTGATGGAAAATTTTAT+AGG | - | chr4_2:55576321-55576340 | Msa0608450:intron | 25.0% |
!! | TGCTGATGGAAAATTTTATA+GGG | - | chr4_2:55576322-55576341 | Msa0608450:intron | 25.0% |
! | AGTAGGGTTAATTAAGTAAA+TGG | + | chr4_2:55576440-55576459 | None:intergenic | 25.0% |
! | ATTATAAACTCCTTGAATGA+GGG | + | chr4_2:55576652-55576671 | None:intergenic | 25.0% |
! | AATTATAAACTCCTTGAATG+AGG | + | chr4_2:55576653-55576672 | None:intergenic | 25.0% |
!!! | GTCAAAATTTTAGTTGGAAT+GGG | + | chr4_2:55576838-55576857 | None:intergenic | 25.0% |
!!! | AGTCAAAATTTTAGTTGGAA+TGG | + | chr4_2:55576839-55576858 | None:intergenic | 25.0% |
!!! | AACTGAGTCAAAATTTTAGT+TGG | + | chr4_2:55576844-55576863 | None:intergenic | 25.0% |
! | CAGTATATAAGTCAAACATT+GGG | - | chr4_2:55577240-55577259 | Msa0608450:intron | 25.0% |
!!! | GAGGTAATTTATTTTTTGAG+GGG | - | chr4_2:55577392-55577411 | Msa0608450:intron | 25.0% |
!! | TTTTGTCCAACCTAAATTTA+AGG | - | chr4_2:55577496-55577515 | Msa0608450:intron | 25.0% |
! | AGAATTCCTTAAATTTAGGT+TGG | + | chr4_2:55577505-55577524 | None:intergenic | 25.0% |
! | AGATAGAGTAATAAAAGTTG+AGG | - | chr4_2:55577591-55577610 | Msa0608450:intron | 25.0% |
! | GATAGAGTAATAAAAGTTGA+GGG | - | chr4_2:55577592-55577611 | Msa0608450:intron | 25.0% |
! | CATTCACATTATATAGGATT+TGG | - | chr4_2:55577716-55577735 | Msa0608450:intron | 25.0% |
!! | ATTTCAAGTACCATAAATCT+AGG | + | chr4_2:55577756-55577775 | None:intergenic | 25.0% |
!!! | AATTATCCTCTAAGATTTGA+AGG | - | chr4_2:55577962-55577981 | Msa0608450:intron | 25.0% |
!!! | ATTATCCTCTAAGATTTGAA+GGG | - | chr4_2:55577963-55577982 | Msa0608450:intron | 25.0% |
! | AGAATAAACCACAGTATATA+TGG | + | chr4_2:55578053-55578072 | None:intergenic | 25.0% |
!! | TGTCCATAATTTAGAAGTAT+TGG | - | chr4_2:55578396-55578415 | Msa0608450:intron | 25.0% |
! | TTGCCAATACTTCTAAATTA+TGG | + | chr4_2:55578402-55578421 | None:intergenic | 25.0% |
!! | TTTTTCTGCAGTTTAATCAA+AGG | + | chr4_2:55578485-55578504 | None:intergenic | 25.0% |
!!! | TTATGATGAAGATTTTGAGA+AGG | - | chr4_2:55578559-55578578 | Msa0608450:intron | 25.0% |
! | TTATACAAGACTAAACAATC+TGG | - | chr4_2:55578801-55578820 | Msa0608450:intron | 25.0% |
! | GCTAAGGAATATGAAAAATA+TGG | + | chr4_2:55578875-55578894 | None:intergenic | 25.0% |
!!! | CAGAGTTTTATAATTACTAC+TGG | - | chr4_2:55579073-55579092 | Msa0608450:intron | 25.0% |
!! | AACCAAGTGATGAATATTTT+TGG | - | chr4_2:55579340-55579359 | Msa0608450:intron | 25.0% |
! | AACCAAAAATATTCATCACT+TGG | + | chr4_2:55579345-55579364 | None:intergenic | 25.0% |
!! | TAAGGATGATTTGGATTAAA+TGG | + | chr4_2:55579389-55579408 | None:intergenic | 25.0% |
!! | TATTGTTTAAGGTTGTTATG+AGG | - | chr4_2:55579829-55579848 | Msa0608450:intron | 25.0% |
! | CACTATTTATAGTGATCATA+AGG | + | chr4_2:55579891-55579910 | None:intergenic | 25.0% |
! | TAGTGATCATTTGTGATATA+TGG | - | chr4_2:55579906-55579925 | Msa0608450:intron | 25.0% |
! | TCAAATTAGGTCAAATCATT+CGG | + | chr4_2:55580065-55580084 | None:intergenic | 25.0% |
! | TTACACAAGGTCTAAAAAAT+TGG | - | chr4_2:55580228-55580247 | Msa0608450:intron | 25.0% |
! | GAGTATGCACAATAATAATA+AGG | - | chr4_2:55580352-55580371 | Msa0608450:intron | 25.0% |
! | TATGCACAATAATAATAAGG+TGG | - | chr4_2:55580355-55580374 | Msa0608450:intron | 25.0% |
CAATGAGCAATGATATAACA+AGG | + | chr4_2:55574515-55574534 | None:intergenic | 30.0% | |
GTTATATCATTGCTCATTGA+AGG | - | chr4_2:55574516-55574535 | Msa0608450:CDS | 30.0% | |
!!! | TAACCAACCTGTTTTAGTTT+TGG | + | chr4_2:55574778-55574797 | None:intergenic | 30.0% |
GTCATTTCTTCTGACAATAT+CGG | - | chr4_2:55575002-55575021 | Msa0608450:intron | 30.0% | |
! | TTGATGCAAATTTTGGACAT+TGG | + | chr4_2:55575033-55575052 | None:intergenic | 30.0% |
! | ATCCTTGTTGATGCAAATTT+TGG | + | chr4_2:55575040-55575059 | None:intergenic | 30.0% |
AAGTACTCAGAATCTTTACA+TGG | + | chr4_2:55575081-55575100 | None:intergenic | 30.0% | |
TGATCATGCAAGAAAAGAAT+TGG | - | chr4_2:55575107-55575126 | Msa0608450:intron | 30.0% | |
GATCATGCAAGAAAAGAATT+GGG | - | chr4_2:55575108-55575127 | Msa0608450:intron | 30.0% | |
GTTGATATTTCTTGTTCGTT+TGG | - | chr4_2:55575449-55575468 | Msa0608450:CDS | 30.0% | |
! | AGATTAAGATATTTAGCTCC+AGG | + | chr4_2:55575651-55575670 | None:intergenic | 30.0% |
TGTACATTAACAATGTGTCT+TGG | - | chr4_2:55575700-55575719 | Msa0608450:intron | 30.0% | |
GTACATTAACAATGTGTCTT+GGG | - | chr4_2:55575701-55575720 | Msa0608450:intron | 30.0% | |
TACAATTGTGACAGTTACTT+TGG | - | chr4_2:55576069-55576088 | Msa0608450:CDS | 30.0% | |
AACCAGAAGGAAGAAAATTA+AGG | - | chr4_2:55576128-55576147 | Msa0608450:intron | 30.0% | |
ACCAGAAGGAAGAAAATTAA+GGG | - | chr4_2:55576129-55576148 | Msa0608450:intron | 30.0% | |
!! | GTCCACGTATATACTTTTTA+GGG | - | chr4_2:55576151-55576170 | Msa0608450:intron | 30.0% |
! | AACCCTAAAAAGTATATACG+TGG | + | chr4_2:55576156-55576175 | None:intergenic | 30.0% |
TTTAGTCCCTAAAATGCTTA+AGG | + | chr4_2:55576268-55576287 | None:intergenic | 30.0% | |
TTAGGGACTAAAAATGTTGA+TGG | - | chr4_2:55576276-55576295 | Msa0608450:CDS | 30.0% | |
ATAAGGACTAAAAATGCTGA+TGG | - | chr4_2:55576308-55576327 | Msa0608450:intron | 30.0% | |
ATAGGGACTAAAAATGTTGA+TGG | - | chr4_2:55576339-55576358 | Msa0608450:intron | 30.0% | |
!!! | CCAGTTTTGACTTTATGTTA+TGG | + | chr4_2:55576587-55576606 | None:intergenic | 30.0% |
CCATAACATAAAGTCAAAAC+TGG | - | chr4_2:55576584-55576603 | Msa0608450:CDS | 30.0% | |
AAAGAAATTGATAGGTGGTT+TGG | + | chr4_2:55576680-55576699 | None:intergenic | 30.0% | |
AAGGAAAAGAAATTGATAGG+TGG | + | chr4_2:55576685-55576704 | None:intergenic | 30.0% | |
! | TGATGGGTATACACAAAAAA+AGG | + | chr4_2:55576704-55576723 | None:intergenic | 30.0% |
TTGTGGCATATTATCAAGTT+TGG | + | chr4_2:55576759-55576778 | None:intergenic | 30.0% | |
CAATATCACATGTAAGGAAT+GGG | + | chr4_2:55576980-55576999 | None:intergenic | 30.0% | |
TAAGTGCAATATCACATGTA+AGG | + | chr4_2:55576986-55577005 | None:intergenic | 30.0% | |
AGATGAGAAGATGGAAAAAA+TGG | - | chr4_2:55577014-55577033 | Msa0608450:intron | 30.0% | |
GATGAGAAGATGGAAAAAAT+GGG | - | chr4_2:55577015-55577034 | Msa0608450:intron | 30.0% | |
CTTGAATATCAGATAGACAA+TGG | - | chr4_2:55577055-55577074 | Msa0608450:CDS | 30.0% | |
AGCTCAATTTATTTAGACAG+AGG | + | chr4_2:55577121-55577140 | None:intergenic | 30.0% | |
! | CCAATGTTTGACTTATATAC+TGG | + | chr4_2:55577242-55577261 | None:intergenic | 30.0% |
CCAGTATATAAGTCAAACAT+TGG | - | chr4_2:55577239-55577258 | Msa0608450:intron | 30.0% | |
TATATAAGTCAAACATTGGG+TGG | - | chr4_2:55577243-55577262 | Msa0608450:intron | 30.0% | |
! | TTGAATGAGAGAATGTTTTG+AGG | - | chr4_2:55577373-55577392 | Msa0608450:intron | 30.0% |
TCACATTATATAGGATTTGG+AGG | - | chr4_2:55577719-55577738 | Msa0608450:intron | 30.0% | |
! | TTTTTCCCTTCAAATCTTAG+AGG | + | chr4_2:55577971-55577990 | None:intergenic | 30.0% |
CTAAGATTTGAAGGGAAAAA+TGG | - | chr4_2:55577971-55577990 | Msa0608450:intron | 30.0% | |
AATTAGAGCCATATATACTG+TGG | - | chr4_2:55578042-55578061 | Msa0608450:intron | 30.0% | |
! | ATGTGTAGGTATGTTTTATG+CGG | - | chr4_2:55578073-55578092 | Msa0608450:intron | 30.0% |
ATTACTTTGCTCTACGAAAT+GGG | - | chr4_2:55578124-55578143 | Msa0608450:CDS | 30.0% | |
!! | AAGTTTCATGTTGGTAATAG+TGG | + | chr4_2:55578172-55578191 | None:intergenic | 30.0% |
! | GACAGTTAAGTTCTTGTTTA+TGG | + | chr4_2:55578241-55578260 | None:intergenic | 30.0% |
!!! | ATGGTAGTTTTAAATTGTGG+TGG | - | chr4_2:55578274-55578293 | Msa0608450:intron | 30.0% |
!! | TAGAAGTATTGGCAATTTGT+TGG | - | chr4_2:55578407-55578426 | Msa0608450:intron | 30.0% |
AAAATCTTCATCATAAGTGC+GGG | + | chr4_2:55578555-55578574 | None:intergenic | 30.0% | |
CAAAATCTTCATCATAAGTG+CGG | + | chr4_2:55578556-55578575 | None:intergenic | 30.0% | |
CAAGGCTCCTAATTATAATA+TGG | - | chr4_2:55578706-55578725 | Msa0608450:intron | 30.0% | |
CTTGCGTCCATATTATAATT+AGG | + | chr4_2:55578716-55578735 | None:intergenic | 30.0% | |
! | TAATCTTTTGATACTCTTGC+AGG | - | chr4_2:55578830-55578849 | Msa0608450:intron | 30.0% |
TTTACCACAAGTGGAATAAA+TGG | + | chr4_2:55579102-55579121 | None:intergenic | 30.0% | |
GATATGAAATTTACCACAAG+TGG | + | chr4_2:55579111-55579130 | None:intergenic | 30.0% | |
!!! | ATCACTTGGTTTTACAAGTA+TGG | + | chr4_2:55579331-55579350 | None:intergenic | 30.0% |
! | TTTGGTTTCATAAACCTGAA+TGG | - | chr4_2:55579358-55579377 | Msa0608450:intron | 30.0% |
TAAAAAGTAGTACCTGGATA+AGG | + | chr4_2:55579407-55579426 | None:intergenic | 30.0% | |
TTCTCATAAAAAGTAGTACC+TGG | + | chr4_2:55579413-55579432 | None:intergenic | 30.0% | |
! | AGTGAAAAATGCAAGTTGAA+AGG | + | chr4_2:55579518-55579537 | None:intergenic | 30.0% |
! | TTCAACTTGCATTTTTCACT+TGG | - | chr4_2:55579518-55579537 | Msa0608450:CDS | 30.0% |
TTGCTTCAATAGAGAAAAAG+AGG | - | chr4_2:55579676-55579695 | Msa0608450:intron | 30.0% | |
GGAAGAGTAAAAACAAAAGA+TGG | + | chr4_2:55579942-55579961 | None:intergenic | 30.0% | |
! | TTTTACTCTTCCGTTTCAAT+AGG | - | chr4_2:55579950-55579969 | Msa0608450:intron | 30.0% |
! | CATGAGAAAGGAAATTTTCA+CGG | - | chr4_2:55580199-55580218 | Msa0608450:intron | 30.0% |
! | TTTTTAGACCTTGTGTAACA+TGG | + | chr4_2:55580226-55580245 | None:intergenic | 30.0% |
! | CTAGTCACTACAATTACTTT+TGG | + | chr4_2:55580461-55580480 | None:intergenic | 30.0% |
! | TTCCTCAACAGTCTTTATTT+CGG | + | chr4_2:55580576-55580595 | None:intergenic | 30.0% |
AAGACTGTTGAGGAAAATAA+TGG | - | chr4_2:55580581-55580600 | Msa0608450:intron | 30.0% | |
AGATCTTTGTTCTCCTTCTA+TGG | + | chr4_2:55574445-55574464 | None:intergenic | 35.0% | |
ATATCATTGCTCATTGAAGG+AGG | - | chr4_2:55574519-55574538 | Msa0608450:CDS | 35.0% | |
TAATTACCTCAGCCAATTTG+TGG | + | chr4_2:55574548-55574567 | None:intergenic | 35.0% | |
GCTTTGACCAAAACTAAAAC+AGG | - | chr4_2:55574768-55574787 | Msa0608450:CDS | 35.0% | |
TGACCAAAACTAAAACAGGT+TGG | - | chr4_2:55574772-55574791 | Msa0608450:CDS | 35.0% | |
GTCCAAAATTTGCATCAACA+AGG | - | chr4_2:55575035-55575054 | Msa0608450:intron | 35.0% | |
AGGATGTAGCAAATTCTTTC+CGG | - | chr4_2:55575055-55575074 | Msa0608450:intron | 35.0% | |
AAAGATTCTGAGTACTTAGC+AGG | - | chr4_2:55575084-55575103 | Msa0608450:intron | 35.0% | |
TTCGTTTGGCCAGAATTATA+CGG | - | chr4_2:55575463-55575482 | Msa0608450:CDS | 35.0% | |
! | AATTTCAAGTGAAGGAATCC+TGG | - | chr4_2:55575630-55575649 | Msa0608450:CDS | 35.0% |
GATATGAAACACAGCCAAAA+TGG | + | chr4_2:55575674-55575693 | None:intergenic | 35.0% | |
ATTAACAATGTGTCTTGGGA+AGG | - | chr4_2:55575705-55575724 | Msa0608450:intron | 35.0% | |
TGTGAAATTGTCCAATGTGA+CGG | + | chr4_2:55575763-55575782 | None:intergenic | 35.0% | |
TCTGGTTACAAGTTACAACA+AGG | + | chr4_2:55576115-55576134 | None:intergenic | 35.0% | |
! | TGTTGTAACTTGTAACCAGA+AGG | - | chr4_2:55576115-55576134 | Msa0608450:intron | 35.0% |
! | ACCCTTAATTTTCTTCCTTC+TGG | + | chr4_2:55576133-55576152 | None:intergenic | 35.0% |
!! | GGTCCACGTATATACTTTTT+AGG | - | chr4_2:55576150-55576169 | Msa0608450:intron | 35.0% |
TGCTTAAGGAAAATGTCACA+GGG | + | chr4_2:55576254-55576273 | None:intergenic | 35.0% | |
ATGCTTAAGGAAAATGTCAC+AGG | + | chr4_2:55576255-55576274 | None:intergenic | 35.0% | |
TTTGACTCAGTTGACAAAGA+CGG | - | chr4_2:55576852-55576871 | Msa0608450:intron | 35.0% | |
!! | TATTAAAAAGTACTGTGGGC+TGG | - | chr4_2:55576947-55576966 | Msa0608450:intron | 35.0% |
!! | ATTAAAAAGTACTGTGGGCT+GGG | - | chr4_2:55576948-55576967 | Msa0608450:intron | 35.0% |
GCAATATCACATGTAAGGAA+TGG | + | chr4_2:55576981-55577000 | None:intergenic | 35.0% | |
ATCTTTCACAGATGAGAAGA+TGG | - | chr4_2:55577005-55577024 | Msa0608450:intron | 35.0% | |
!! | GCAAGCGTCATTTTAAATTC+TGG | - | chr4_2:55577265-55577284 | Msa0608450:intron | 35.0% |
ATAATTATTCTCCCTTGCTG+TGG | - | chr4_2:55577289-55577308 | Msa0608450:intron | 35.0% | |
!! | TTTTGGGTACTTCAAACACA+TGG | - | chr4_2:55577541-55577560 | Msa0608450:intron | 35.0% |
CTGTGGTTTATTCTATGTGT+AGG | - | chr4_2:55578059-55578078 | Msa0608450:intron | 35.0% | |
GATTACTTTGCTCTACGAAA+TGG | - | chr4_2:55578123-55578142 | Msa0608450:CDS | 35.0% | |
TGCATGGTGGTTATACTTAT+TGG | - | chr4_2:55578208-55578227 | Msa0608450:intron | 35.0% | |
AAAGATTGCAACCGTAATTG+TGG | + | chr4_2:55578344-55578363 | None:intergenic | 35.0% | |
CTGCAGAAAAACATTTCTGA+AGG | - | chr4_2:55578494-55578513 | Msa0608450:intron | 35.0% | |
!! | GAAGATTTTGAGAAGGTTGT+TGG | - | chr4_2:55578566-55578585 | Msa0608450:intron | 35.0% |
! | TTTGATACTCTTGCAGGTTT+TGG | - | chr4_2:55578836-55578855 | Msa0608450:intron | 35.0% |
ATTGAAGATTGCTCTTCTTG+CGG | - | chr4_2:55579233-55579252 | Msa0608450:intron | 35.0% | |
ATTAAATGGAGAAGCCATTC+AGG | + | chr4_2:55579375-55579394 | None:intergenic | 35.0% | |
AATCCAAATCATCCTTATCC+AGG | - | chr4_2:55579392-55579411 | Msa0608450:intron | 35.0% | |
! | TTGCATTTTTCACTTGGAGT+TGG | - | chr4_2:55579524-55579543 | Msa0608450:CDS | 35.0% |
! | TGCATTTTTCACTTGGAGTT+GGG | - | chr4_2:55579525-55579544 | Msa0608450:CDS | 35.0% |
AACAGTATGAATTTGGTCCA+AGG | - | chr4_2:55579651-55579670 | Msa0608450:intron | 35.0% | |
AAAAAGAGGACATTGCCATA+AGG | - | chr4_2:55579690-55579709 | Msa0608450:intron | 35.0% | |
ATTGCCATAAGGATTGCATT+GGG | - | chr4_2:55579701-55579720 | Msa0608450:intron | 35.0% | |
TAAACCCAATGCAATCCTTA+TGG | + | chr4_2:55579708-55579727 | None:intergenic | 35.0% | |
! | TGTTTAAGGTTGTTATGAGG+TGG | - | chr4_2:55579832-55579851 | Msa0608450:intron | 35.0% |
AAAGCATGCATCGAAATAAG+TGG | + | chr4_2:55580111-55580130 | None:intergenic | 35.0% | |
TGCATGAAATTGTGACAGAT+GGG | - | chr4_2:55580170-55580189 | Msa0608450:intron | 35.0% | |
!!! | AACTGAGTTGTTGTTGCTTT+TGG | + | chr4_2:55580279-55580298 | None:intergenic | 35.0% |
GAACAAGTGAGAATTCAGTA+AGG | - | chr4_2:55580312-55580331 | Msa0608450:intron | 35.0% | |
GAGTATGCTCAACAACAATA+AGG | - | chr4_2:55580412-55580431 | Msa0608450:intron | 35.0% | |
TATGCTCAACAACAATAAGG+TGG | - | chr4_2:55580415-55580434 | Msa0608450:intron | 35.0% | |
! | AACAGTCTTTATTTCGGAAG+TGG | + | chr4_2:55580570-55580589 | None:intergenic | 35.0% |
TTCCGAAATAAAGACTGTTG+AGG | - | chr4_2:55580571-55580590 | Msa0608450:intron | 35.0% | |
!! | ATCTCCTTTGGAGTTTATGT+GGG | - | chr4_2:55580638-55580657 | Msa0608450:CDS | 35.0% |
TCTTGAAGAAACCCCAACAT+GGG | - | chr4_2:55574464-55574483 | Msa0608450:CDS | 40.0% | |
AAACTGATACAGCCCATGTT+GGG | + | chr4_2:55574479-55574498 | None:intergenic | 40.0% | |
GAAAAGAAAATCCATGGGGA+AGG | - | chr4_2:55574746-55574765 | Msa0608450:CDS | 40.0% | |
ACTCAGAATCTTTACATGGC+CGG | + | chr4_2:55575077-55575096 | None:intergenic | 40.0% | |
TTGCTTCACAATAGTTCTCG+TGG | + | chr4_2:55575137-55575156 | None:intergenic | 40.0% | |
CGAGAACTATTGTGAAGCAA+AGG | - | chr4_2:55575137-55575156 | Msa0608450:intron | 40.0% | |
TCATGTTCACACCTTCTCAA+AGG | - | chr4_2:55575205-55575224 | Msa0608450:intron | 40.0% | |
ATTCGGTCACCGTATAATTC+TGG | + | chr4_2:55575475-55575494 | None:intergenic | 40.0% | |
! | GTAGGGCTAATTTCAAGTGA+AGG | - | chr4_2:55575622-55575641 | Msa0608450:intron | 40.0% |
AAATGCTTGTATGGATGGGA+TGG | + | chr4_2:55576629-55576648 | None:intergenic | 40.0% | |
AGGGAAATGCTTGTATGGAT+GGG | + | chr4_2:55576633-55576652 | None:intergenic | 40.0% | |
GAATGAGGGAAATGCTTGTA+TGG | + | chr4_2:55576638-55576657 | None:intergenic | 40.0% | |
ACAAGCATTTCCCTCATTCA+AGG | - | chr4_2:55576639-55576658 | Msa0608450:CDS | 40.0% | |
GAGAAGATGGAAAAAATGGG+AGG | - | chr4_2:55577018-55577037 | Msa0608450:intron | 40.0% | |
AAGATGGAAAAAATGGGAGG+AGG | - | chr4_2:55577021-55577040 | Msa0608450:CDS | 40.0% | |
TCACTTACAATCCACAGCAA+GGG | + | chr4_2:55577303-55577322 | None:intergenic | 40.0% | |
TTCACTTACAATCCACAGCA+AGG | + | chr4_2:55577304-55577323 | None:intergenic | 40.0% | |
CAACATGAAACTTCCTCACT+GGG | - | chr4_2:55578179-55578198 | Msa0608450:intron | 40.0% | |
TATGGATGCGACCACAATTA+CGG | - | chr4_2:55578330-55578349 | Msa0608450:intron | 40.0% | |
TTGAGAAGGTTGTTGGAATC+AGG | - | chr4_2:55578573-55578592 | Msa0608450:intron | 40.0% | |
TTCATATTCCTTAGCGCACA+TGG | - | chr4_2:55578880-55578899 | Msa0608450:intron | 40.0% | |
GCTTCCATTTATTCCACTTG+TGG | - | chr4_2:55579095-55579114 | Msa0608450:intron | 40.0% | |
TTGAAGATTGCTCTTCTTGC+GGG | - | chr4_2:55579234-55579253 | Msa0608450:intron | 40.0% | |
GTATGGTTCCTTTGATCACA+GGG | + | chr4_2:55579314-55579333 | None:intergenic | 40.0% | |
AGTATGGTTCCTTTGATCAC+AGG | + | chr4_2:55579315-55579334 | None:intergenic | 40.0% | |
GTACCTGGATAAGGATGATT+TGG | + | chr4_2:55579398-55579417 | None:intergenic | 40.0% | |
TCTCTATTGAAGCAAGACCT+TGG | + | chr4_2:55579671-55579690 | None:intergenic | 40.0% | |
CATTGCCATAAGGATTGCAT+TGG | - | chr4_2:55579700-55579719 | Msa0608450:intron | 40.0% | |
TGAGTGACAAGTGTGTAAAG+GGG | + | chr4_2:55579764-55579783 | None:intergenic | 40.0% | |
CTGAGTGACAAGTGTGTAAA+GGG | + | chr4_2:55579765-55579784 | None:intergenic | 40.0% | |
!! | GGTGATGCTTAGTTGATAGT+CGG | - | chr4_2:55579853-55579872 | Msa0608450:intron | 40.0% |
ACTCTTCCGTTTCAATAGGA+AGG | - | chr4_2:55579954-55579973 | Msa0608450:intron | 40.0% | |
CTGCATGAAATTGTGACAGA+TGG | - | chr4_2:55580169-55580188 | Msa0608450:intron | 40.0% | |
GCATGAAATTGTGACAGATG+GGG | - | chr4_2:55580171-55580190 | Msa0608450:intron | 40.0% | |
AATGGTAAGATCATCACCAG+AGG | - | chr4_2:55580599-55580618 | Msa0608450:intron | 40.0% | |
ATCACCAGAGGAATCTATGA+CGG | - | chr4_2:55580611-55580630 | Msa0608450:intron | 40.0% | |
!! | GATCTCCTTTGGAGTTTATG+TGG | - | chr4_2:55580637-55580656 | Msa0608450:CDS | 40.0% |
ACTACCCACATAAACTCCAA+AGG | + | chr4_2:55580645-55580664 | None:intergenic | 40.0% | |
CTCTTGAAGAAACCCCAACA+TGG | - | chr4_2:55574463-55574482 | Msa0608450:CDS | 45.0% | |
AACTGATACAGCCCATGTTG+GGG | + | chr4_2:55574478-55574497 | None:intergenic | 45.0% | |
CAAACTGATACAGCCCATGT+TGG | + | chr4_2:55574480-55574499 | None:intergenic | 45.0% | |
TGAAGGAGGTCTCCACAAAT+TGG | - | chr4_2:55574533-55574552 | Msa0608450:CDS | 45.0% | |
TTATGATTGCCTGTGACTGC+AGG | - | chr4_2:55575594-55575613 | Msa0608450:intron | 45.0% | |
TATGATTGCCTGTGACTGCA+GGG | - | chr4_2:55575595-55575614 | Msa0608450:intron | 45.0% | |
AATGTGTCTTGGGAAGGCTA+AGG | - | chr4_2:55575711-55575730 | Msa0608450:intron | 45.0% | |
TCGAACAATGACCGTCACAT+TGG | - | chr4_2:55575749-55575768 | Msa0608450:intron | 45.0% | |
GAGGGAAATGCTTGTATGGA+TGG | + | chr4_2:55576634-55576653 | None:intergenic | 45.0% | |
CCAGTGAGGAAGTTTCATGT+TGG | + | chr4_2:55578181-55578200 | None:intergenic | 45.0% | |
CCAACATGAAACTTCCTCAC+TGG | - | chr4_2:55578178-55578197 | Msa0608450:intron | 45.0% | |
!!! | ACTCTTGCAGGTTTTGGATC+TGG | - | chr4_2:55578842-55578861 | Msa0608450:intron | 45.0% |
ATGTCATACCATGTGCGCTA+AGG | + | chr4_2:55578891-55578910 | None:intergenic | 45.0% | |
TGAAGATTGCTCTTCTTGCG+GGG | - | chr4_2:55579235-55579254 | Msa0608450:intron | 45.0% | |
GGCTTTGCTTGCAACTATCT+AGG | + | chr4_2:55579293-55579312 | None:intergenic | 45.0% | |
AAGCAAAGCCCTGTGATCAA+AGG | - | chr4_2:55579303-55579322 | Msa0608450:intron | 45.0% | |
CCTGAGTGACAAGTGTGTAA+AGG | + | chr4_2:55579766-55579785 | None:intergenic | 45.0% | |
CCTTTACACACTTGTCACTC+AGG | - | chr4_2:55579763-55579782 | Msa0608450:intron | 45.0% | |
AGCGGTCCTTCCTATTGAAA+CGG | + | chr4_2:55579963-55579982 | None:intergenic | 45.0% | |
GATGGGGTCTAACATGAGAA+AGG | - | chr4_2:55580187-55580206 | Msa0608450:intron | 45.0% | |
TTCACGGACCATGTTACACA+AGG | - | chr4_2:55580215-55580234 | Msa0608450:intron | 45.0% | |
TATGACGGTGAGATCTCCTT+TGG | - | chr4_2:55580626-55580645 | Msa0608450:CDS | 45.0% | |
TATGTGGGTAGTAGTAGCAG+AGG | - | chr4_2:55580653-55580672 | Msa0608450:CDS | 45.0% | |
! | GTAGTAGTAGCAGAGGCATA+GGG | - | chr4_2:55580660-55580679 | Msa0608450:CDS | 45.0% |
! | TAGTAGTAGCAGAGGCATAG+GGG | - | chr4_2:55580661-55580680 | Msa0608450:CDS | 45.0% |
!!! | ACTTTTTATTTTAAATAAAA+AGG | + | chr4_2:55574842-55574861 | None:intergenic | 5.0% |
!! | TACAATTTATTATATTTAAA+GGG | - | chr4_2:55579160-55579179 | Msa0608450:intron | 5.0% |
AGGTCTCCACAAATTGGCTG+AGG | - | chr4_2:55574539-55574558 | Msa0608450:CDS | 50.0% | |
TTTGGTCAAAGCCTTCCCCA+TGG | + | chr4_2:55574760-55574779 | None:intergenic | 50.0% | |
CCATGCATGAAATCCCAGTG+AGG | + | chr4_2:55578195-55578214 | None:intergenic | 50.0% | |
CCTCACTGGGATTTCATGCA+TGG | - | chr4_2:55578192-55578211 | Msa0608450:intron | 50.0% | |
CACTGGGATTTCATGCATGG+TGG | - | chr4_2:55578195-55578214 | Msa0608450:intron | 50.0% | |
CTTCCAGAGTTGTTACCAGG+AGG | + | chr4_2:55580488-55580507 | None:intergenic | 50.0% | |
CCACTTCCAGAGTTGTTACC+AGG | + | chr4_2:55580491-55580510 | None:intergenic | 50.0% | |
! | CCTGGTAACAACTCTGGAAG+TGG | - | chr4_2:55580488-55580507 | Msa0608450:intron | 50.0% |
! | CAACTCTGGAAGTGGAGAAG+AGG | - | chr4_2:55580496-55580515 | Msa0608450:intron | 50.0% |
CTCACCGTCATAGATTCCTC+TGG | + | chr4_2:55580618-55580637 | None:intergenic | 50.0% | |
! | GGTAGTAGTAGCAGAGGCAT+AGG | - | chr4_2:55580659-55580678 | Msa0608450:CDS | 50.0% |
TGTGACTGCAGGGCAAGGTA+GGG | - | chr4_2:55575605-55575624 | Msa0608450:intron | 55.0% | |
CACACACACACACACACGCA+AGG | - | chr4_2:55578688-55578707 | Msa0608450:intron | 55.0% | |
! | GTAGTGACTAGTCCTCCTCC+TGG | - | chr4_2:55580470-55580489 | Msa0608450:intron | 55.0% |
CCAGAGTTGTTACCAGGAGG+AGG | + | chr4_2:55580485-55580504 | None:intergenic | 55.0% | |
CCTCCTCCTGGTAACAACTC+TGG | - | chr4_2:55580482-55580501 | Msa0608450:intron | 55.0% | |
TTGCCTGTGACTGCAGGGCA+AGG | - | chr4_2:55575600-55575619 | Msa0608450:intron | 60.0% | |
CTACCTTGCCCTGCAGTCAC+AGG | + | chr4_2:55575606-55575625 | None:intergenic | 60.0% | |
CTGTGACTGCAGGGCAAGGT+AGG | - | chr4_2:55575604-55575623 | Msa0608450:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_2 | gene | 55574438 | 55580736 | 55574438 | ID=Msa0608450;Name=Msa0608450 |
chr4_2 | mRNA | 55574438 | 55580736 | 55574438 | ID=Msa0608450-mRNA-1;Parent=Msa0608450;Name=Msa0608450-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|1|1|13|0|546 |
chr4_2 | exon | 55580614 | 55580736 | 55580614 | ID=Msa0608450-mRNA-1:exon:14178;Parent=Msa0608450-mRNA-1 |
chr4_2 | exon | 55580016 | 55580117 | 55580016 | ID=Msa0608450-mRNA-1:exon:14177;Parent=Msa0608450-mRNA-1 |
chr4_2 | exon | 55579442 | 55579558 | 55579442 | ID=Msa0608450-mRNA-1:exon:14176;Parent=Msa0608450-mRNA-1 |
chr4_2 | exon | 55578098 | 55578158 | 55578098 | ID=Msa0608450-mRNA-1:exon:14175;Parent=Msa0608450-mRNA-1 |
chr4_2 | exon | 55577860 | 55577948 | 55577860 | ID=Msa0608450-mRNA-1:exon:14174;Parent=Msa0608450-mRNA-1 |
chr4_2 | exon | 55577019 | 55577093 | 55577019 | ID=Msa0608450-mRNA-1:exon:14173;Parent=Msa0608450-mRNA-1 |
chr4_2 | exon | 55576580 | 55576674 | 55576580 | ID=Msa0608450-mRNA-1:exon:14172;Parent=Msa0608450-mRNA-1 |
chr4_2 | exon | 55576273 | 55576322 | 55576273 | ID=Msa0608450-mRNA-1:exon:14171;Parent=Msa0608450-mRNA-1 |
chr4_2 | exon | 55576058 | 55576098 | 55576058 | ID=Msa0608450-mRNA-1:exon:14170;Parent=Msa0608450-mRNA-1 |
chr4_2 | exon | 55575761 | 55575934 | 55575761 | ID=Msa0608450-mRNA-1:exon:14169;Parent=Msa0608450-mRNA-1 |
chr4_2 | exon | 55575628 | 55575663 | 55575628 | ID=Msa0608450-mRNA-1:exon:14168;Parent=Msa0608450-mRNA-1 |
chr4_2 | exon | 55575390 | 55575518 | 55575390 | ID=Msa0608450-mRNA-1:exon:14167;Parent=Msa0608450-mRNA-1 |
chr4_2 | exon | 55574438 | 55574986 | 55574438 | ID=Msa0608450-mRNA-1:exon:14166;Parent=Msa0608450-mRNA-1 |
chr4_2 | CDS | 55580614 | 55580736 | 55580614 | ID=Msa0608450-mRNA-1:cds;Parent=Msa0608450-mRNA-1 |
chr4_2 | CDS | 55580016 | 55580117 | 55580016 | ID=Msa0608450-mRNA-1:cds;Parent=Msa0608450-mRNA-1 |
chr4_2 | CDS | 55579442 | 55579558 | 55579442 | ID=Msa0608450-mRNA-1:cds;Parent=Msa0608450-mRNA-1 |
chr4_2 | CDS | 55578098 | 55578158 | 55578098 | ID=Msa0608450-mRNA-1:cds;Parent=Msa0608450-mRNA-1 |
chr4_2 | CDS | 55577860 | 55577948 | 55577860 | ID=Msa0608450-mRNA-1:cds;Parent=Msa0608450-mRNA-1 |
chr4_2 | CDS | 55577019 | 55577093 | 55577019 | ID=Msa0608450-mRNA-1:cds;Parent=Msa0608450-mRNA-1 |
chr4_2 | CDS | 55576580 | 55576674 | 55576580 | ID=Msa0608450-mRNA-1:cds;Parent=Msa0608450-mRNA-1 |
chr4_2 | CDS | 55576273 | 55576322 | 55576273 | ID=Msa0608450-mRNA-1:cds;Parent=Msa0608450-mRNA-1 |
chr4_2 | CDS | 55576058 | 55576098 | 55576058 | ID=Msa0608450-mRNA-1:cds;Parent=Msa0608450-mRNA-1 |
chr4_2 | CDS | 55575761 | 55575934 | 55575761 | ID=Msa0608450-mRNA-1:cds;Parent=Msa0608450-mRNA-1 |
chr4_2 | CDS | 55575628 | 55575663 | 55575628 | ID=Msa0608450-mRNA-1:cds;Parent=Msa0608450-mRNA-1 |
chr4_2 | CDS | 55575390 | 55575518 | 55575390 | ID=Msa0608450-mRNA-1:cds;Parent=Msa0608450-mRNA-1 |
chr4_2 | CDS | 55574438 | 55574986 | 55574438 | ID=Msa0608450-mRNA-1:cds;Parent=Msa0608450-mRNA-1 |
Gene Sequence |
Protein sequence |