AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0608450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0608450 MtrunA17_Chr4g0040611 86.735 588 11 3 4 546 3 568 0.0 999
Msa0608450 MtrunA17_Chr6g0462051 39.609 563 257 7 7 494 8 562 7.58e-135 403
Msa0608450 MtrunA17_Chr2g0326301 41.860 473 203 5 1 402 1 472 2.31e-127 385
Msa0608450 MtrunA17_Chr3g0144171 34.066 546 283 8 7 481 8 547 2.53e-110 340
Msa0608450 MtrunA17_Chr5g0407381 35.965 456 223 6 8 401 28 476 2.19e-97 306
Msa0608450 MtrunA17_Chr8g0370181 36.093 471 240 5 5 416 35 503 1.06e-95 303
Msa0608450 MtrunA17_Chr8g0337941 38.275 371 219 5 56 421 135 500 6.06e-87 278
Msa0608450 MtrunA17_Chr3g0144201 34.554 437 240 6 58 454 136 566 3.32e-84 272
Msa0608450 MtrunA17_Chr8g0337931 38.636 352 200 4 70 410 135 481 1.29e-82 266
Msa0608450 MtrunA17_Chr3g0145831 38.994 318 190 3 70 385 142 457 5.19e-81 262
Msa0608450 MtrunA17_Chr2g0291441 37.471 435 188 11 1 368 1 418 5.99e-77 251
Msa0608450 MtrunA17_Chr2g0317801 31.648 455 229 11 6 391 7 448 6.13e-68 229
Msa0608450 MtrunA17_Chr2g0277471 31.738 397 248 7 74 455 135 523 4.41e-65 221
Msa0608450 MtrunA17_Chr5g0405641 28.052 385 201 9 6 320 8 386 6.41e-38 144
Msa0608450 MtrunA17_Chr5g0405651 40.000 60 36 0 337 396 7 66 2.65e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0608450 AT1G61560.1 37.907 583 266 11 1 500 1 570 8.12e-132 396
Msa0608450 AT2G39200.1 40.283 494 222 5 1 425 1 490 8.27e-130 391
Msa0608450 AT1G61560.2 43.468 444 230 8 66 500 77 508 5.83e-125 377
Msa0608450 AT1G61560.3 43.468 444 230 8 66 500 77 508 5.83e-125 377
Msa0608450 AT1G61560.4 38.214 560 247 12 1 475 1 546 8.58e-125 378
Msa0608450 AT1G11310.1 38.735 506 233 6 1 429 1 506 4.32e-121 368
Msa0608450 AT1G61560.10 40.724 442 185 4 1 368 1 439 2.91e-118 357
Msa0608450 AT1G11310.3 46.260 361 191 2 72 429 84 444 8.95e-117 355
Msa0608450 AT1G61560.7 38.995 418 178 4 1 344 1 415 6.58e-105 321
Msa0608450 AT1G61560.9 38.995 418 178 4 1 344 1 415 6.58e-105 321
Msa0608450 AT1G11310.2 37.799 418 186 3 1 344 1 418 1.02e-98 305
Msa0608450 AT2G33670.1 35.062 482 252 6 8 435 15 489 1.10e-97 305
Msa0608450 AT2G17480.1 32.836 536 280 8 7 470 38 565 2.44e-97 307
Msa0608450 AT1G61560.6 38.142 409 174 5 1 335 1 404 2.02e-95 296
Msa0608450 AT1G61560.8 38.142 409 174 5 1 335 1 404 2.02e-95 296
Msa0608450 AT1G61560.5 38.142 409 174 5 1 335 1 404 2.02e-95 296
Msa0608450 AT3G45290.1 35.147 441 227 4 5 390 14 450 2.75e-92 292
Msa0608450 AT5G65970.1 35.431 429 228 3 5 386 31 457 2.33e-91 291
Msa0608450 AT2G17430.1 34.763 443 235 4 8 398 31 471 5.45e-90 287
Msa0608450 AT1G42560.1 42.271 317 180 2 75 391 143 456 1.21e-89 283
Msa0608450 AT2G44110.1 32.568 479 258 7 3 421 1 474 1.84e-86 276
Msa0608450 AT2G44110.2 32.988 482 253 9 3 421 1 475 3.53e-85 273
Msa0608450 AT4G02600.2 37.921 356 211 5 40 391 113 462 4.08e-84 271
Msa0608450 AT4G02600.1 37.921 356 211 5 40 391 113 462 4.08e-84 271
Msa0608450 AT4G24250.1 33.970 471 244 8 4 410 3 470 1.18e-79 258
Msa0608450 AT1G26700.1 30.870 460 237 9 4 391 6 456 6.84e-68 229
Msa0608450 AT1G26700.2 30.870 460 237 9 4 391 6 456 6.84e-68 229
Msa0608450 AT1G11000.1 29.957 464 257 8 6 407 7 464 3.35e-66 225
Msa0608450 AT1G11000.3 29.957 464 257 8 6 407 7 464 3.35e-66 225
Msa0608450 AT5G53760.2 29.258 458 246 7 4 391 12 461 8.89e-65 221
Msa0608450 AT5G53760.1 29.258 458 246 7 4 391 12 461 8.89e-65 221
Msa0608450 AT4G24250.2 32.921 404 205 7 4 344 3 403 1.49e-61 208
Msa0608450 AT5G65970.2 31.765 340 183 3 5 297 31 368 9.12e-57 197
Msa0608450 AT1G42560.2 38.723 235 141 2 75 309 143 374 8.11e-52 182
Msa0608450 AT1G11000.2 28.678 401 219 7 6 344 7 402 4.75e-50 178

Find 105 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGGATGATTTGGATTAAA+TGG 0.181806 4_2:+55575766 None:intergenic
AAATATCTTAATCTCCATTT+TGG 0.201941 4_2:-55579495 Msa0608450:CDS
AACTGAGTTGTTGTTGCTTT+TGG 0.224442 4_2:+55574876 None:intergenic
TTTACCACAAGTGGAATAAA+TGG 0.270886 4_2:+55576053 None:intergenic
AGATCTTTGTTCTCCTTCTA+TGG 0.274984 4_2:+55580710 None:intergenic
CCAATGTTTGACTTATATAC+TGG 0.303042 4_2:+55577913 None:intergenic
TTGAAGATTGCTCTTCTTGC+GGG 0.303473 4_2:-55575918 Msa0608450:intron
GATATGAAACACAGCCAAAA+TGG 0.307125 4_2:+55579481 None:intergenic
TGATCATGCAAGAAAAGAAT+TGG 0.326385 4_2:-55580045 Msa0608450:CDS
AATAAACAACAGTATGAATT+TGG 0.330082 4_2:-55575508 Msa0608450:intron
TTGAGAAGGTTGTTGGAATC+AGG 0.333178 4_2:-55576579 Msa0608450:intron
GTACCTGGATAAGGATGATT+TGG 0.341935 4_2:+55575757 None:intergenic
GATTACTTTGCTCTACGAAA+TGG 0.343568 4_2:-55577029 Msa0608450:CDS
AGGATGTAGCAAATTCTTTC+CGG 0.347163 4_2:-55580097 Msa0608450:CDS
ATTAAATGGAGAAGCCATTC+AGG 0.350449 4_2:+55575780 None:intergenic
TTCCTCAACAGTCTTTATTT+CGG 0.358468 4_2:+55574579 None:intergenic
CTGAGTGACAAGTGTGTAAA+GGG 0.371791 4_2:+55575390 None:intergenic
CTGTGACTGCAGGGCAAGGT+AGG 0.374978 4_2:-55579548 Msa0608450:intron
CTAGTCACTACAATTACTTT+TGG 0.384195 4_2:+55574694 None:intergenic
GAGTATGCACAATAATAATA+AGG 0.384959 4_2:-55574800 Msa0608450:CDS
TGAAGGAGGTCTCCACAAAT+TGG 0.400561 4_2:-55580619 Msa0608450:CDS
GTTATATCATTGCTCATTGA+AGG 0.402100 4_2:-55580636 Msa0608450:CDS
AAGACTGTTGAGGAAAATAA+TGG 0.404778 4_2:-55574571 Msa0608450:CDS
TAAACCCAATGCAATCCTTA+TGG 0.406086 4_2:+55575447 None:intergenic
TAATTACCTCAGCCAATTTG+TGG 0.407648 4_2:+55580607 None:intergenic
CCACTTCCAGAGTTGTTACC+AGG 0.412305 4_2:+55574664 None:intergenic
AAACCTCTCATGGCCATAGA+AGG 0.415078 4_2:-55580723 None:intergenic
GATCTCCTTTGGAGTTTATG+TGG 0.416490 4_2:-55574515 Msa0608450:CDS
GGCTTTGCTTGCAACTATCT+AGG 0.416507 4_2:+55575862 None:intergenic
AAACTGATACAGCCCATGTT+GGG 0.422274 4_2:+55580676 None:intergenic
ATTACTTTGCTCTACGAAAT+GGG 0.431916 4_2:-55577028 Msa0608450:CDS
AACAGTCTTTATTTCGGAAG+TGG 0.434111 4_2:+55574585 None:intergenic
GAGTATGCTCAACAACAATA+AGG 0.436327 4_2:-55574740 Msa0608450:CDS
TGTACATTAACAATGTGTCT+TGG 0.440032 4_2:-55579452 Msa0608450:CDS
TATGACGGTGAGATCTCCTT+TGG 0.443120 4_2:-55574526 Msa0608450:CDS
GTACATTAACAATGTGTCTT+GGG 0.457251 4_2:-55579451 Msa0608450:CDS
TTTGGTTTCATAAACCTGAA+TGG 0.459950 4_2:-55575794 Msa0608450:CDS
CATTGCCATAAGGATTGCAT+TGG 0.474727 4_2:-55575452 Msa0608450:CDS
AGATTAAGATATTTAGCTCC+AGG 0.480755 4_2:+55579504 None:intergenic
GGTAGTAGTAGCAGAGGCAT+AGG 0.481563 4_2:-55574493 Msa0608450:CDS
GATCATGCAAGAAAAGAATT+GGG 0.482157 4_2:-55580044 Msa0608450:CDS
ATCTTTCACAGATGAGAAGA+TGG 0.492186 4_2:-55578147 Msa0608450:intron
AATCCAAATCATCCTTATCC+AGG 0.494454 4_2:-55575760 Msa0608450:intron
ATCTCCTTTGGAGTTTATGT+GGG 0.503670 4_2:-55574514 Msa0608450:CDS
CCAGTATATAAGTCAAACAT+TGG 0.504115 4_2:-55577913 Msa0608450:CDS
AATTTCAAGTGAAGGAATCC+TGG 0.504758 4_2:-55579522 Msa0608450:CDS
TTCATATTCCTTAGCGCACA+TGG 0.505852 4_2:-55576272 Msa0608450:intron
ATTGCCATAAGGATTGCATT+GGG 0.506123 4_2:-55575451 Msa0608450:CDS
CCTGGTAACAACTCTGGAAG+TGG 0.506889 4_2:-55574664 Msa0608450:CDS
AGTATGGTTCCTTTGATCAC+AGG 0.507864 4_2:+55575840 None:intergenic
ATTGAAGATTGCTCTTCTTG+CGG 0.519046 4_2:-55575919 Msa0608450:intron
TCTCTATTGAAGCAAGACCT+TGG 0.520717 4_2:+55575484 None:intergenic
GATATGAAATTTACCACAAG+TGG 0.523559 4_2:+55576044 None:intergenic
CCTTTACACACTTGTCACTC+AGG 0.526042 4_2:-55575389 Msa0608450:intron
CCTGAGTGACAAGTGTGTAA+AGG 0.527556 4_2:+55575389 None:intergenic
AAAGATTCTGAGTACTTAGC+AGG 0.531068 4_2:-55580068 Msa0608450:CDS
AAAATCTTCATCATAAGTGC+GGG 0.531685 4_2:+55576600 None:intergenic
ATAATTATTCTCCCTTGCTG+TGG 0.535167 4_2:-55577863 Msa0608450:CDS
GTAGTAGTAGCAGAGGCATA+GGG 0.538522 4_2:-55574492 Msa0608450:CDS
ACTCAGAATCTTTACATGGC+CGG 0.539479 4_2:+55580078 None:intergenic
TGTGACTGCAGGGCAAGGTA+GGG 0.539627 4_2:-55579547 Msa0608450:intron
GCTTCCATTTATTCCACTTG+TGG 0.539948 4_2:-55576057 Msa0608450:intron
CCTCCTCCTGGTAACAACTC+TGG 0.540953 4_2:-55574670 Msa0608450:CDS
CAAACTGATACAGCCCATGT+TGG 0.543473 4_2:+55580675 None:intergenic
CAGTATATAAGTCAAACATT+GGG 0.546043 4_2:-55577912 Msa0608450:CDS
CTCTTGAAGAAACCCCAACA+TGG 0.546661 4_2:-55580689 Msa0608450:CDS
GATGGGGTCTAACATGAGAA+AGG 0.555306 4_2:-55574965 Msa0608450:CDS
CTCACCGTCATAGATTCCTC+TGG 0.557735 4_2:+55574537 None:intergenic
ATGTCATACCATGTGCGCTA+AGG 0.562400 4_2:+55576264 None:intergenic
GTAGTGACTAGTCCTCCTCC+TGG 0.570950 4_2:-55574682 Msa0608450:CDS
GTATGGTTCCTTTGATCACA+GGG 0.572250 4_2:+55575841 None:intergenic
GAACAAGTGAGAATTCAGTA+AGG 0.572786 4_2:-55574840 Msa0608450:CDS
CCAGAGTTGTTACCAGGAGG+AGG 0.576377 4_2:+55574670 None:intergenic
AAGCAAAGCCCTGTGATCAA+AGG 0.576388 4_2:-55575849 Msa0608450:CDS
CAAAATCTTCATCATAAGTG+CGG 0.578283 4_2:+55576599 None:intergenic
TTCACTTACAATCCACAGCA+AGG 0.584522 4_2:+55577851 None:intergenic
CAACTCTGGAAGTGGAGAAG+AGG 0.584996 4_2:-55574656 Msa0608450:CDS
TATATAAGTCAAACATTGGG+TGG 0.585326 4_2:-55577909 Msa0608450:CDS
TTGCTTCACAATAGTTCTCG+TGG 0.588634 4_2:+55580018 None:intergenic
TGAAGATTGCTCTTCTTGCG+GGG 0.590863 4_2:-55575917 Msa0608450:intron
GTAGGGCTAATTTCAAGTGA+AGG 0.595494 4_2:-55579530 Msa0608450:CDS
ACATTGTTAATGTACAGTAA+AGG 0.600246 4_2:+55579459 None:intergenic
AACAGTATGAATTTGGTCCA+AGG 0.601579 4_2:-55575501 Msa0608450:intron
ATTAACAATGTGTCTTGGGA+AGG 0.603269 4_2:-55579447 Msa0608450:CDS
AACTGATACAGCCCATGTTG+GGG 0.610102 4_2:+55580677 None:intergenic
AGGTCTCCACAAATTGGCTG+AGG 0.613365 4_2:-55580613 Msa0608450:intron
TATGTGGGTAGTAGTAGCAG+AGG 0.614979 4_2:-55574499 Msa0608450:CDS
ATATCATTGCTCATTGAAGG+AGG 0.616291 4_2:-55580633 Msa0608450:CDS
CAATGAGCAATGATATAACA+AGG 0.619401 4_2:+55580640 None:intergenic
TCACTTACAATCCACAGCAA+GGG 0.621969 4_2:+55577852 None:intergenic
TCTTGAAGAAACCCCAACAT+GGG 0.624163 4_2:-55580688 Msa0608450:CDS
TTCACGGACCATGTTACACA+AGG 0.625229 4_2:-55574937 Msa0608450:CDS
TTCCGAAATAAAGACTGTTG+AGG 0.625259 4_2:-55574581 Msa0608450:CDS
TAGTAGTAGCAGAGGCATAG+GGG 0.625440 4_2:-55574491 Msa0608450:CDS
CGAGAACTATTGTGAAGCAA+AGG 0.626303 4_2:-55580015 Msa0608450:intron
TATGCACAATAATAATAAGG+TGG 0.626838 4_2:-55574797 Msa0608450:CDS
AAGTACTCAGAATCTTTACA+TGG 0.627255 4_2:+55580074 None:intergenic
CTTGAATATCAGATAGACAA+TGG 0.634126 4_2:-55578097 Msa0608450:intron
TATGCTCAACAACAATAAGG+TGG 0.634436 4_2:-55574737 Msa0608450:CDS
ACTACCCACATAAACTCCAA+AGG 0.636649 4_2:+55574510 None:intergenic
AATGTGTCTTGGGAAGGCTA+AGG 0.641200 4_2:-55579441 Msa0608450:intron
ATCACCAGAGGAATCTATGA+CGG 0.655023 4_2:-55574541 Msa0608450:CDS
CTTCCAGAGTTGTTACCAGG+AGG 0.684826 4_2:+55574667 None:intergenic
AATGGTAAGATCATCACCAG+AGG 0.694073 4_2:-55574553 Msa0608450:CDS
TGAGTGACAAGTGTGTAAAG+GGG 0.718362 4_2:+55575391 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTTTTTTAATATGTAAAT+CGG - chr4_2:55575332-55575351 Msa0608450:intron 10.0%
!!! CAAAAATAGTTTTATATTTT+TGG + chr4_2:55576034-55576053 None:intergenic 10.0%
!!! ACAAAATTTTGAATATTTAT+AGG - chr4_2:55576412-55576431 Msa0608450:intron 10.0%
!!! CAAAATTTTGAATATTTATA+GGG - chr4_2:55576413-55576432 Msa0608450:intron 10.0%
!!! TTTTGATAATATAAAAAGTA+GGG + chr4_2:55576456-55576475 None:intergenic 10.0%
!!! ATTTTGATAATATAAAAAGT+AGG + chr4_2:55576457-55576476 None:intergenic 10.0%
!!! TATTTTTGAACTTTTTAAAT+TGG + chr4_2:55577649-55577668 None:intergenic 10.0%
!! TTTAAAAAGTTCAAAAATAT+AGG - chr4_2:55577650-55577669 Msa0608450:intron 10.0%
!! TTAAAAAGTTCAAAAATATA+GGG - chr4_2:55577651-55577670 Msa0608450:intron 10.0%
!!! TATATGATAGAATTTTATTT+AGG + chr4_2:55577883-55577902 None:intergenic 10.0%
!! GTACAATTTATTATATTTAA+AGG - chr4_2:55579159-55579178 Msa0608450:intron 10.0%
!! ATTACTAATGAATATTATAT+TGG - chr4_2:55579561-55579580 Msa0608450:intron 10.0%
!!! ATTTAAAATAAAAAGTGATG+AGG - chr4_2:55574846-55574865 Msa0608450:CDS 15.0%
!! AAATAAATATGACTAAACTA+CGG + chr4_2:55575306-55575325 None:intergenic 15.0%
!! ATGTTAGTTAATAAATTGTT+AGG - chr4_2:55575427-55575446 Msa0608450:CDS 15.0%
!!! TACTTTTAGTTTTTTTTTAG+TGG + chr4_2:55575996-55576015 None:intergenic 15.0%
!! GAAGAAATAAAATAATTGAT+GGG + chr4_2:55576720-55576739 None:intergenic 15.0%
!! TGAAGAAATAAAATAATTGA+TGG + chr4_2:55576721-55576740 None:intergenic 15.0%
!!! AATTATTTTATTTCTTCAGT+TGG - chr4_2:55576723-55576742 Msa0608450:intron 15.0%
!!! ACATGATTTTATATATCATA+TGG - chr4_2:55576913-55576932 Msa0608450:intron 15.0%
!!! TAATGAAATTACTAGTATTT+TGG - chr4_2:55577524-55577543 Msa0608450:intron 15.0%
!!! AATGAAATTACTAGTATTTT+GGG - chr4_2:55577525-55577544 Msa0608450:intron 15.0%
!!! ATTTTTAAAACTTTGTAAGT+TGG + chr4_2:55577619-55577638 None:intergenic 15.0%
!!! TTCTTTCAAAATTTTCAAAA+TGG + chr4_2:55577678-55577697 None:intergenic 15.0%
!!! AATTTGTTAAAGCTAAATTT+AGG + chr4_2:55577781-55577800 None:intergenic 15.0%
!! TTCTATCATATAATATTTGA+AGG - chr4_2:55577891-55577910 Msa0608450:CDS 15.0%
!! TCTATCATATAATATTTGAA+GGG - chr4_2:55577892-55577911 Msa0608450:CDS 15.0%
!!! TTAGGAAATGTAATTTTTTT+CGG + chr4_2:55577928-55577947 None:intergenic 15.0%
!! ACTGTCAAATTTATTATTTA+TGG - chr4_2:55578255-55578274 Msa0608450:intron 15.0%
!! AAATTACATGTATTTATGAT+AGG + chr4_2:55578610-55578629 None:intergenic 15.0%
!!! CTTATAAGTTTATTTTTTCA+TGG - chr4_2:55578955-55578974 Msa0608450:intron 15.0%
!! AGAATCATCATATTTAAAAA+AGG + chr4_2:55579615-55579634 None:intergenic 15.0%
!! AATTAGTTGAATATTGTTTA+AGG - chr4_2:55579818-55579837 Msa0608450:intron 15.0%
!! AAAATTATTTCAATCAAAGA+TGG - chr4_2:55580025-55580044 Msa0608450:CDS 15.0%
!! AATAAGAAAAGAAAATCCAT+GGG - chr4_2:55574741-55574760 Msa0608450:CDS 20.0%
!!! AATGATTAGCTTAAATAACT+TGG - chr4_2:55574937-55574956 Msa0608450:CDS 20.0%
!! AAAATAGAAATGATGAAACT+AGG - chr4_2:55574973-55574992 Msa0608450:intron 20.0%
!! TATAAAAAAAACAACAGACA+AGG + chr4_2:55575398-55575417 None:intergenic 20.0%
!!! AAATATCTTAATCTCCATTT+TGG - chr4_2:55575657-55575676 Msa0608450:intron 20.0%
!!! TCATATGTAAAAGTATTCAT+TGG - chr4_2:55575910-55575929 Msa0608450:CDS 20.0%
!!! TTTTTTTTTAGTGGTACTTT+TGG + chr4_2:55575987-55576006 None:intergenic 20.0%
!! CAAAACTGTGAATATTTATA+GGG + chr4_2:55576194-55576213 None:intergenic 20.0%
!! ACAAAACTGTGAATATTTAT+AGG + chr4_2:55576195-55576214 None:intergenic 20.0%
!!! AAGTGTGATTTTATTTTGTA+GGG + chr4_2:55576382-55576401 None:intergenic 20.0%
!!! AAAGTGTGATTTTATTTTGT+AGG + chr4_2:55576381-55576400 None:intergenic 20.0%
!!! GTTGATGGAAAAATTTTATA+AGG - chr4_2:55576291-55576310 Msa0608450:CDS 20.0%
!!! ATGTTGATGGAAAATTTTAT+AGG - chr4_2:55576352-55576371 Msa0608450:intron 20.0%
!!! TGTTGATGGAAAATTTTATA+GGG - chr4_2:55576353-55576372 Msa0608450:intron 20.0%
!!! AAGTGTGATTTTATTTTGTA+AGG - chr4_2:55576382-55576401 Msa0608450:intron 20.0%
!! AAAAAGGAAAAGAAATTGAT+AGG + chr4_2:55576688-55576707 None:intergenic 20.0%
!!! CATATTATCAATTGATTTTG+TGG + chr4_2:55576776-55576795 None:intergenic 20.0%
!!! ATATCTATTAAAAAGTACTG+TGG - chr4_2:55576942-55576961 Msa0608450:intron 20.0%
!!! TATCTATTAAAAAGTACTGT+GGG - chr4_2:55576943-55576962 Msa0608450:intron 20.0%
!! TAATAACACATCAAAGATTA+AGG + chr4_2:55577084-55577103 None:intergenic 20.0%
!!! AAACATGAAATATTTAGAGT+AGG - chr4_2:55577349-55577368 Msa0608450:intron 20.0%
!!! TTGAGGTAATTTATTTTTTG+AGG - chr4_2:55577390-55577409 Msa0608450:intron 20.0%
!!! TGAGGTAATTTATTTTTTGA+GGG - chr4_2:55577391-55577410 Msa0608450:intron 20.0%
!! TCTACATAAATTTCATTCTT+CGG - chr4_2:55577427-55577446 Msa0608450:intron 20.0%
!! CATTAGAATTCCTTAAATTT+AGG + chr4_2:55577509-55577528 None:intergenic 20.0%
!! ATTTGACATTCACATTATAT+AGG - chr4_2:55577710-55577729 Msa0608450:intron 20.0%
!! ATTTCAAATTCCTAGATTTA+TGG - chr4_2:55577743-55577762 Msa0608450:intron 20.0%
!!! TTTAGGTAGTGTAATTTTAA+AGG + chr4_2:55577866-55577885 None:intergenic 20.0%
!!! AATTCAACGTTTTCAATTTT+AGG + chr4_2:55577946-55577965 None:intergenic 20.0%
!!! GTAAAGCATTTGATATTATA+TGG + chr4_2:55578011-55578030 None:intergenic 20.0%
!!! TTTATGGTAGTTTTAAATTG+TGG - chr4_2:55578271-55578290 Msa0608450:intron 20.0%
!! TTTGATACTGTAACAAAATA+TGG - chr4_2:55578312-55578331 Msa0608450:intron 20.0%
!!! CCACAATTTAAATTTTTTAG+AGG + chr4_2:55578374-55578393 None:intergenic 20.0%
!!! CCTCTAAAAAATTTAAATTG+TGG - chr4_2:55578371-55578390 Msa0608450:intron 20.0%
!! ACTTATAAGTAAAATAGCAA+GGG + chr4_2:55578944-55578963 None:intergenic 20.0%
!! AACTTATAAGTAAAATAGCA+AGG + chr4_2:55578945-55578964 None:intergenic 20.0%
!! AATAAACAACAGTATGAATT+TGG - chr4_2:55579644-55579663 Msa0608450:intron 20.0%
!! TTTAAACTCTAAATTACTAG+CGG + chr4_2:55579981-55580000 None:intergenic 20.0%
!! ATGTTAATACTCTTCAAATT+AGG + chr4_2:55580078-55580097 None:intergenic 20.0%
!!! AATTTGAAGAGTATTAACAT+TGG - chr4_2:55580078-55580097 Msa0608450:CDS 20.0%
!! TCTAAAAAATTGGCATAAAA+AGG - chr4_2:55580238-55580257 Msa0608450:intron 20.0%
! GCATTTATGAAAAAACTTGT+TGG - chr4_2:55574597-55574616 Msa0608450:CDS 25.0%
! TTCTTATTCTTCAAAAACTG+AGG + chr4_2:55574729-55574748 None:intergenic 25.0%
! GAATAAGAAAAGAAAATCCA+TGG - chr4_2:55574740-55574759 Msa0608450:CDS 25.0%
! ATAAGAAAAGAAAATCCATG+GGG - chr4_2:55574742-55574761 Msa0608450:CDS 25.0%
!! TTTTAAATTTGCAACTAACG+AGG - chr4_2:55574810-55574829 Msa0608450:CDS 25.0%
! TTTAAATTTGCAACTAACGA+GGG - chr4_2:55574811-55574830 Msa0608450:CDS 25.0%
!! ATTTATAAAAGCCTTTGAGA+AGG + chr4_2:55575219-55575238 None:intergenic 25.0%
!! CTTTTCAACGATGTATAATT+CGG + chr4_2:55575492-55575511 None:intergenic 25.0%
! ACATTGTTAATGTACAGTAA+AGG + chr4_2:55575696-55575715 None:intergenic 25.0%
!! ACATTTTCCTTAAGCATTTT+AGG - chr4_2:55576258-55576277 Msa0608450:intron 25.0%
!! CATTTTCCTTAAGCATTTTA+GGG - chr4_2:55576259-55576278 Msa0608450:intron 25.0%
!! ATGCTGATGGAAAATTTTAT+AGG - chr4_2:55576321-55576340 Msa0608450:intron 25.0%
!! TGCTGATGGAAAATTTTATA+GGG - chr4_2:55576322-55576341 Msa0608450:intron 25.0%
! AGTAGGGTTAATTAAGTAAA+TGG + chr4_2:55576440-55576459 None:intergenic 25.0%
! ATTATAAACTCCTTGAATGA+GGG + chr4_2:55576652-55576671 None:intergenic 25.0%
! AATTATAAACTCCTTGAATG+AGG + chr4_2:55576653-55576672 None:intergenic 25.0%
!!! GTCAAAATTTTAGTTGGAAT+GGG + chr4_2:55576838-55576857 None:intergenic 25.0%
!!! AGTCAAAATTTTAGTTGGAA+TGG + chr4_2:55576839-55576858 None:intergenic 25.0%
!!! AACTGAGTCAAAATTTTAGT+TGG + chr4_2:55576844-55576863 None:intergenic 25.0%
! CAGTATATAAGTCAAACATT+GGG - chr4_2:55577240-55577259 Msa0608450:intron 25.0%
!!! GAGGTAATTTATTTTTTGAG+GGG - chr4_2:55577392-55577411 Msa0608450:intron 25.0%
!! TTTTGTCCAACCTAAATTTA+AGG - chr4_2:55577496-55577515 Msa0608450:intron 25.0%
! AGAATTCCTTAAATTTAGGT+TGG + chr4_2:55577505-55577524 None:intergenic 25.0%
! AGATAGAGTAATAAAAGTTG+AGG - chr4_2:55577591-55577610 Msa0608450:intron 25.0%
! GATAGAGTAATAAAAGTTGA+GGG - chr4_2:55577592-55577611 Msa0608450:intron 25.0%
! CATTCACATTATATAGGATT+TGG - chr4_2:55577716-55577735 Msa0608450:intron 25.0%
!! ATTTCAAGTACCATAAATCT+AGG + chr4_2:55577756-55577775 None:intergenic 25.0%
!!! AATTATCCTCTAAGATTTGA+AGG - chr4_2:55577962-55577981 Msa0608450:intron 25.0%
!!! ATTATCCTCTAAGATTTGAA+GGG - chr4_2:55577963-55577982 Msa0608450:intron 25.0%
! AGAATAAACCACAGTATATA+TGG + chr4_2:55578053-55578072 None:intergenic 25.0%
!! TGTCCATAATTTAGAAGTAT+TGG - chr4_2:55578396-55578415 Msa0608450:intron 25.0%
! TTGCCAATACTTCTAAATTA+TGG + chr4_2:55578402-55578421 None:intergenic 25.0%
!! TTTTTCTGCAGTTTAATCAA+AGG + chr4_2:55578485-55578504 None:intergenic 25.0%
!!! TTATGATGAAGATTTTGAGA+AGG - chr4_2:55578559-55578578 Msa0608450:intron 25.0%
! TTATACAAGACTAAACAATC+TGG - chr4_2:55578801-55578820 Msa0608450:intron 25.0%
! GCTAAGGAATATGAAAAATA+TGG + chr4_2:55578875-55578894 None:intergenic 25.0%
!!! CAGAGTTTTATAATTACTAC+TGG - chr4_2:55579073-55579092 Msa0608450:intron 25.0%
!! AACCAAGTGATGAATATTTT+TGG - chr4_2:55579340-55579359 Msa0608450:intron 25.0%
! AACCAAAAATATTCATCACT+TGG + chr4_2:55579345-55579364 None:intergenic 25.0%
!! TAAGGATGATTTGGATTAAA+TGG + chr4_2:55579389-55579408 None:intergenic 25.0%
!! TATTGTTTAAGGTTGTTATG+AGG - chr4_2:55579829-55579848 Msa0608450:intron 25.0%
! CACTATTTATAGTGATCATA+AGG + chr4_2:55579891-55579910 None:intergenic 25.0%
! TAGTGATCATTTGTGATATA+TGG - chr4_2:55579906-55579925 Msa0608450:intron 25.0%
! TCAAATTAGGTCAAATCATT+CGG + chr4_2:55580065-55580084 None:intergenic 25.0%
! TTACACAAGGTCTAAAAAAT+TGG - chr4_2:55580228-55580247 Msa0608450:intron 25.0%
! GAGTATGCACAATAATAATA+AGG - chr4_2:55580352-55580371 Msa0608450:intron 25.0%
! TATGCACAATAATAATAAGG+TGG - chr4_2:55580355-55580374 Msa0608450:intron 25.0%
CAATGAGCAATGATATAACA+AGG + chr4_2:55574515-55574534 None:intergenic 30.0%
GTTATATCATTGCTCATTGA+AGG - chr4_2:55574516-55574535 Msa0608450:CDS 30.0%
!!! TAACCAACCTGTTTTAGTTT+TGG + chr4_2:55574778-55574797 None:intergenic 30.0%
GTCATTTCTTCTGACAATAT+CGG - chr4_2:55575002-55575021 Msa0608450:intron 30.0%
! TTGATGCAAATTTTGGACAT+TGG + chr4_2:55575033-55575052 None:intergenic 30.0%
! ATCCTTGTTGATGCAAATTT+TGG + chr4_2:55575040-55575059 None:intergenic 30.0%
AAGTACTCAGAATCTTTACA+TGG + chr4_2:55575081-55575100 None:intergenic 30.0%
TGATCATGCAAGAAAAGAAT+TGG - chr4_2:55575107-55575126 Msa0608450:intron 30.0%
GATCATGCAAGAAAAGAATT+GGG - chr4_2:55575108-55575127 Msa0608450:intron 30.0%
GTTGATATTTCTTGTTCGTT+TGG - chr4_2:55575449-55575468 Msa0608450:CDS 30.0%
! AGATTAAGATATTTAGCTCC+AGG + chr4_2:55575651-55575670 None:intergenic 30.0%
TGTACATTAACAATGTGTCT+TGG - chr4_2:55575700-55575719 Msa0608450:intron 30.0%
GTACATTAACAATGTGTCTT+GGG - chr4_2:55575701-55575720 Msa0608450:intron 30.0%
TACAATTGTGACAGTTACTT+TGG - chr4_2:55576069-55576088 Msa0608450:CDS 30.0%
AACCAGAAGGAAGAAAATTA+AGG - chr4_2:55576128-55576147 Msa0608450:intron 30.0%
ACCAGAAGGAAGAAAATTAA+GGG - chr4_2:55576129-55576148 Msa0608450:intron 30.0%
!! GTCCACGTATATACTTTTTA+GGG - chr4_2:55576151-55576170 Msa0608450:intron 30.0%
! AACCCTAAAAAGTATATACG+TGG + chr4_2:55576156-55576175 None:intergenic 30.0%
TTTAGTCCCTAAAATGCTTA+AGG + chr4_2:55576268-55576287 None:intergenic 30.0%
TTAGGGACTAAAAATGTTGA+TGG - chr4_2:55576276-55576295 Msa0608450:CDS 30.0%
ATAAGGACTAAAAATGCTGA+TGG - chr4_2:55576308-55576327 Msa0608450:intron 30.0%
ATAGGGACTAAAAATGTTGA+TGG - chr4_2:55576339-55576358 Msa0608450:intron 30.0%
!!! CCAGTTTTGACTTTATGTTA+TGG + chr4_2:55576587-55576606 None:intergenic 30.0%
CCATAACATAAAGTCAAAAC+TGG - chr4_2:55576584-55576603 Msa0608450:CDS 30.0%
AAAGAAATTGATAGGTGGTT+TGG + chr4_2:55576680-55576699 None:intergenic 30.0%
AAGGAAAAGAAATTGATAGG+TGG + chr4_2:55576685-55576704 None:intergenic 30.0%
! TGATGGGTATACACAAAAAA+AGG + chr4_2:55576704-55576723 None:intergenic 30.0%
TTGTGGCATATTATCAAGTT+TGG + chr4_2:55576759-55576778 None:intergenic 30.0%
CAATATCACATGTAAGGAAT+GGG + chr4_2:55576980-55576999 None:intergenic 30.0%
TAAGTGCAATATCACATGTA+AGG + chr4_2:55576986-55577005 None:intergenic 30.0%
AGATGAGAAGATGGAAAAAA+TGG - chr4_2:55577014-55577033 Msa0608450:intron 30.0%
GATGAGAAGATGGAAAAAAT+GGG - chr4_2:55577015-55577034 Msa0608450:intron 30.0%
CTTGAATATCAGATAGACAA+TGG - chr4_2:55577055-55577074 Msa0608450:CDS 30.0%
AGCTCAATTTATTTAGACAG+AGG + chr4_2:55577121-55577140 None:intergenic 30.0%
! CCAATGTTTGACTTATATAC+TGG + chr4_2:55577242-55577261 None:intergenic 30.0%
CCAGTATATAAGTCAAACAT+TGG - chr4_2:55577239-55577258 Msa0608450:intron 30.0%
TATATAAGTCAAACATTGGG+TGG - chr4_2:55577243-55577262 Msa0608450:intron 30.0%
! TTGAATGAGAGAATGTTTTG+AGG - chr4_2:55577373-55577392 Msa0608450:intron 30.0%
TCACATTATATAGGATTTGG+AGG - chr4_2:55577719-55577738 Msa0608450:intron 30.0%
! TTTTTCCCTTCAAATCTTAG+AGG + chr4_2:55577971-55577990 None:intergenic 30.0%
CTAAGATTTGAAGGGAAAAA+TGG - chr4_2:55577971-55577990 Msa0608450:intron 30.0%
AATTAGAGCCATATATACTG+TGG - chr4_2:55578042-55578061 Msa0608450:intron 30.0%
! ATGTGTAGGTATGTTTTATG+CGG - chr4_2:55578073-55578092 Msa0608450:intron 30.0%
ATTACTTTGCTCTACGAAAT+GGG - chr4_2:55578124-55578143 Msa0608450:CDS 30.0%
!! AAGTTTCATGTTGGTAATAG+TGG + chr4_2:55578172-55578191 None:intergenic 30.0%
! GACAGTTAAGTTCTTGTTTA+TGG + chr4_2:55578241-55578260 None:intergenic 30.0%
!!! ATGGTAGTTTTAAATTGTGG+TGG - chr4_2:55578274-55578293 Msa0608450:intron 30.0%
!! TAGAAGTATTGGCAATTTGT+TGG - chr4_2:55578407-55578426 Msa0608450:intron 30.0%
AAAATCTTCATCATAAGTGC+GGG + chr4_2:55578555-55578574 None:intergenic 30.0%
CAAAATCTTCATCATAAGTG+CGG + chr4_2:55578556-55578575 None:intergenic 30.0%
CAAGGCTCCTAATTATAATA+TGG - chr4_2:55578706-55578725 Msa0608450:intron 30.0%
CTTGCGTCCATATTATAATT+AGG + chr4_2:55578716-55578735 None:intergenic 30.0%
! TAATCTTTTGATACTCTTGC+AGG - chr4_2:55578830-55578849 Msa0608450:intron 30.0%
TTTACCACAAGTGGAATAAA+TGG + chr4_2:55579102-55579121 None:intergenic 30.0%
GATATGAAATTTACCACAAG+TGG + chr4_2:55579111-55579130 None:intergenic 30.0%
!!! ATCACTTGGTTTTACAAGTA+TGG + chr4_2:55579331-55579350 None:intergenic 30.0%
! TTTGGTTTCATAAACCTGAA+TGG - chr4_2:55579358-55579377 Msa0608450:intron 30.0%
TAAAAAGTAGTACCTGGATA+AGG + chr4_2:55579407-55579426 None:intergenic 30.0%
TTCTCATAAAAAGTAGTACC+TGG + chr4_2:55579413-55579432 None:intergenic 30.0%
! AGTGAAAAATGCAAGTTGAA+AGG + chr4_2:55579518-55579537 None:intergenic 30.0%
! TTCAACTTGCATTTTTCACT+TGG - chr4_2:55579518-55579537 Msa0608450:CDS 30.0%
TTGCTTCAATAGAGAAAAAG+AGG - chr4_2:55579676-55579695 Msa0608450:intron 30.0%
GGAAGAGTAAAAACAAAAGA+TGG + chr4_2:55579942-55579961 None:intergenic 30.0%
! TTTTACTCTTCCGTTTCAAT+AGG - chr4_2:55579950-55579969 Msa0608450:intron 30.0%
! CATGAGAAAGGAAATTTTCA+CGG - chr4_2:55580199-55580218 Msa0608450:intron 30.0%
! TTTTTAGACCTTGTGTAACA+TGG + chr4_2:55580226-55580245 None:intergenic 30.0%
! CTAGTCACTACAATTACTTT+TGG + chr4_2:55580461-55580480 None:intergenic 30.0%
! TTCCTCAACAGTCTTTATTT+CGG + chr4_2:55580576-55580595 None:intergenic 30.0%
AAGACTGTTGAGGAAAATAA+TGG - chr4_2:55580581-55580600 Msa0608450:intron 30.0%
AGATCTTTGTTCTCCTTCTA+TGG + chr4_2:55574445-55574464 None:intergenic 35.0%
ATATCATTGCTCATTGAAGG+AGG - chr4_2:55574519-55574538 Msa0608450:CDS 35.0%
TAATTACCTCAGCCAATTTG+TGG + chr4_2:55574548-55574567 None:intergenic 35.0%
GCTTTGACCAAAACTAAAAC+AGG - chr4_2:55574768-55574787 Msa0608450:CDS 35.0%
TGACCAAAACTAAAACAGGT+TGG - chr4_2:55574772-55574791 Msa0608450:CDS 35.0%
GTCCAAAATTTGCATCAACA+AGG - chr4_2:55575035-55575054 Msa0608450:intron 35.0%
AGGATGTAGCAAATTCTTTC+CGG - chr4_2:55575055-55575074 Msa0608450:intron 35.0%
AAAGATTCTGAGTACTTAGC+AGG - chr4_2:55575084-55575103 Msa0608450:intron 35.0%
TTCGTTTGGCCAGAATTATA+CGG - chr4_2:55575463-55575482 Msa0608450:CDS 35.0%
! AATTTCAAGTGAAGGAATCC+TGG - chr4_2:55575630-55575649 Msa0608450:CDS 35.0%
GATATGAAACACAGCCAAAA+TGG + chr4_2:55575674-55575693 None:intergenic 35.0%
ATTAACAATGTGTCTTGGGA+AGG - chr4_2:55575705-55575724 Msa0608450:intron 35.0%
TGTGAAATTGTCCAATGTGA+CGG + chr4_2:55575763-55575782 None:intergenic 35.0%
TCTGGTTACAAGTTACAACA+AGG + chr4_2:55576115-55576134 None:intergenic 35.0%
! TGTTGTAACTTGTAACCAGA+AGG - chr4_2:55576115-55576134 Msa0608450:intron 35.0%
! ACCCTTAATTTTCTTCCTTC+TGG + chr4_2:55576133-55576152 None:intergenic 35.0%
!! GGTCCACGTATATACTTTTT+AGG - chr4_2:55576150-55576169 Msa0608450:intron 35.0%
TGCTTAAGGAAAATGTCACA+GGG + chr4_2:55576254-55576273 None:intergenic 35.0%
ATGCTTAAGGAAAATGTCAC+AGG + chr4_2:55576255-55576274 None:intergenic 35.0%
TTTGACTCAGTTGACAAAGA+CGG - chr4_2:55576852-55576871 Msa0608450:intron 35.0%
!! TATTAAAAAGTACTGTGGGC+TGG - chr4_2:55576947-55576966 Msa0608450:intron 35.0%
!! ATTAAAAAGTACTGTGGGCT+GGG - chr4_2:55576948-55576967 Msa0608450:intron 35.0%
GCAATATCACATGTAAGGAA+TGG + chr4_2:55576981-55577000 None:intergenic 35.0%
ATCTTTCACAGATGAGAAGA+TGG - chr4_2:55577005-55577024 Msa0608450:intron 35.0%
!! GCAAGCGTCATTTTAAATTC+TGG - chr4_2:55577265-55577284 Msa0608450:intron 35.0%
ATAATTATTCTCCCTTGCTG+TGG - chr4_2:55577289-55577308 Msa0608450:intron 35.0%
!! TTTTGGGTACTTCAAACACA+TGG - chr4_2:55577541-55577560 Msa0608450:intron 35.0%
CTGTGGTTTATTCTATGTGT+AGG - chr4_2:55578059-55578078 Msa0608450:intron 35.0%
GATTACTTTGCTCTACGAAA+TGG - chr4_2:55578123-55578142 Msa0608450:CDS 35.0%
TGCATGGTGGTTATACTTAT+TGG - chr4_2:55578208-55578227 Msa0608450:intron 35.0%
AAAGATTGCAACCGTAATTG+TGG + chr4_2:55578344-55578363 None:intergenic 35.0%
CTGCAGAAAAACATTTCTGA+AGG - chr4_2:55578494-55578513 Msa0608450:intron 35.0%
!! GAAGATTTTGAGAAGGTTGT+TGG - chr4_2:55578566-55578585 Msa0608450:intron 35.0%
! TTTGATACTCTTGCAGGTTT+TGG - chr4_2:55578836-55578855 Msa0608450:intron 35.0%
ATTGAAGATTGCTCTTCTTG+CGG - chr4_2:55579233-55579252 Msa0608450:intron 35.0%
ATTAAATGGAGAAGCCATTC+AGG + chr4_2:55579375-55579394 None:intergenic 35.0%
AATCCAAATCATCCTTATCC+AGG - chr4_2:55579392-55579411 Msa0608450:intron 35.0%
! TTGCATTTTTCACTTGGAGT+TGG - chr4_2:55579524-55579543 Msa0608450:CDS 35.0%
! TGCATTTTTCACTTGGAGTT+GGG - chr4_2:55579525-55579544 Msa0608450:CDS 35.0%
AACAGTATGAATTTGGTCCA+AGG - chr4_2:55579651-55579670 Msa0608450:intron 35.0%
AAAAAGAGGACATTGCCATA+AGG - chr4_2:55579690-55579709 Msa0608450:intron 35.0%
ATTGCCATAAGGATTGCATT+GGG - chr4_2:55579701-55579720 Msa0608450:intron 35.0%
TAAACCCAATGCAATCCTTA+TGG + chr4_2:55579708-55579727 None:intergenic 35.0%
! TGTTTAAGGTTGTTATGAGG+TGG - chr4_2:55579832-55579851 Msa0608450:intron 35.0%
AAAGCATGCATCGAAATAAG+TGG + chr4_2:55580111-55580130 None:intergenic 35.0%
TGCATGAAATTGTGACAGAT+GGG - chr4_2:55580170-55580189 Msa0608450:intron 35.0%
!!! AACTGAGTTGTTGTTGCTTT+TGG + chr4_2:55580279-55580298 None:intergenic 35.0%
GAACAAGTGAGAATTCAGTA+AGG - chr4_2:55580312-55580331 Msa0608450:intron 35.0%
GAGTATGCTCAACAACAATA+AGG - chr4_2:55580412-55580431 Msa0608450:intron 35.0%
TATGCTCAACAACAATAAGG+TGG - chr4_2:55580415-55580434 Msa0608450:intron 35.0%
! AACAGTCTTTATTTCGGAAG+TGG + chr4_2:55580570-55580589 None:intergenic 35.0%
TTCCGAAATAAAGACTGTTG+AGG - chr4_2:55580571-55580590 Msa0608450:intron 35.0%
!! ATCTCCTTTGGAGTTTATGT+GGG - chr4_2:55580638-55580657 Msa0608450:CDS 35.0%
TCTTGAAGAAACCCCAACAT+GGG - chr4_2:55574464-55574483 Msa0608450:CDS 40.0%
AAACTGATACAGCCCATGTT+GGG + chr4_2:55574479-55574498 None:intergenic 40.0%
GAAAAGAAAATCCATGGGGA+AGG - chr4_2:55574746-55574765 Msa0608450:CDS 40.0%
ACTCAGAATCTTTACATGGC+CGG + chr4_2:55575077-55575096 None:intergenic 40.0%
TTGCTTCACAATAGTTCTCG+TGG + chr4_2:55575137-55575156 None:intergenic 40.0%
CGAGAACTATTGTGAAGCAA+AGG - chr4_2:55575137-55575156 Msa0608450:intron 40.0%
TCATGTTCACACCTTCTCAA+AGG - chr4_2:55575205-55575224 Msa0608450:intron 40.0%
ATTCGGTCACCGTATAATTC+TGG + chr4_2:55575475-55575494 None:intergenic 40.0%
! GTAGGGCTAATTTCAAGTGA+AGG - chr4_2:55575622-55575641 Msa0608450:intron 40.0%
AAATGCTTGTATGGATGGGA+TGG + chr4_2:55576629-55576648 None:intergenic 40.0%
AGGGAAATGCTTGTATGGAT+GGG + chr4_2:55576633-55576652 None:intergenic 40.0%
GAATGAGGGAAATGCTTGTA+TGG + chr4_2:55576638-55576657 None:intergenic 40.0%
ACAAGCATTTCCCTCATTCA+AGG - chr4_2:55576639-55576658 Msa0608450:CDS 40.0%
GAGAAGATGGAAAAAATGGG+AGG - chr4_2:55577018-55577037 Msa0608450:intron 40.0%
AAGATGGAAAAAATGGGAGG+AGG - chr4_2:55577021-55577040 Msa0608450:CDS 40.0%
TCACTTACAATCCACAGCAA+GGG + chr4_2:55577303-55577322 None:intergenic 40.0%
TTCACTTACAATCCACAGCA+AGG + chr4_2:55577304-55577323 None:intergenic 40.0%
CAACATGAAACTTCCTCACT+GGG - chr4_2:55578179-55578198 Msa0608450:intron 40.0%
TATGGATGCGACCACAATTA+CGG - chr4_2:55578330-55578349 Msa0608450:intron 40.0%
TTGAGAAGGTTGTTGGAATC+AGG - chr4_2:55578573-55578592 Msa0608450:intron 40.0%
TTCATATTCCTTAGCGCACA+TGG - chr4_2:55578880-55578899 Msa0608450:intron 40.0%
GCTTCCATTTATTCCACTTG+TGG - chr4_2:55579095-55579114 Msa0608450:intron 40.0%
TTGAAGATTGCTCTTCTTGC+GGG - chr4_2:55579234-55579253 Msa0608450:intron 40.0%
GTATGGTTCCTTTGATCACA+GGG + chr4_2:55579314-55579333 None:intergenic 40.0%
AGTATGGTTCCTTTGATCAC+AGG + chr4_2:55579315-55579334 None:intergenic 40.0%
GTACCTGGATAAGGATGATT+TGG + chr4_2:55579398-55579417 None:intergenic 40.0%
TCTCTATTGAAGCAAGACCT+TGG + chr4_2:55579671-55579690 None:intergenic 40.0%
CATTGCCATAAGGATTGCAT+TGG - chr4_2:55579700-55579719 Msa0608450:intron 40.0%
TGAGTGACAAGTGTGTAAAG+GGG + chr4_2:55579764-55579783 None:intergenic 40.0%
CTGAGTGACAAGTGTGTAAA+GGG + chr4_2:55579765-55579784 None:intergenic 40.0%
!! GGTGATGCTTAGTTGATAGT+CGG - chr4_2:55579853-55579872 Msa0608450:intron 40.0%
ACTCTTCCGTTTCAATAGGA+AGG - chr4_2:55579954-55579973 Msa0608450:intron 40.0%
CTGCATGAAATTGTGACAGA+TGG - chr4_2:55580169-55580188 Msa0608450:intron 40.0%
GCATGAAATTGTGACAGATG+GGG - chr4_2:55580171-55580190 Msa0608450:intron 40.0%
AATGGTAAGATCATCACCAG+AGG - chr4_2:55580599-55580618 Msa0608450:intron 40.0%
ATCACCAGAGGAATCTATGA+CGG - chr4_2:55580611-55580630 Msa0608450:intron 40.0%
!! GATCTCCTTTGGAGTTTATG+TGG - chr4_2:55580637-55580656 Msa0608450:CDS 40.0%
ACTACCCACATAAACTCCAA+AGG + chr4_2:55580645-55580664 None:intergenic 40.0%
CTCTTGAAGAAACCCCAACA+TGG - chr4_2:55574463-55574482 Msa0608450:CDS 45.0%
AACTGATACAGCCCATGTTG+GGG + chr4_2:55574478-55574497 None:intergenic 45.0%
CAAACTGATACAGCCCATGT+TGG + chr4_2:55574480-55574499 None:intergenic 45.0%
TGAAGGAGGTCTCCACAAAT+TGG - chr4_2:55574533-55574552 Msa0608450:CDS 45.0%
TTATGATTGCCTGTGACTGC+AGG - chr4_2:55575594-55575613 Msa0608450:intron 45.0%
TATGATTGCCTGTGACTGCA+GGG - chr4_2:55575595-55575614 Msa0608450:intron 45.0%
AATGTGTCTTGGGAAGGCTA+AGG - chr4_2:55575711-55575730 Msa0608450:intron 45.0%
TCGAACAATGACCGTCACAT+TGG - chr4_2:55575749-55575768 Msa0608450:intron 45.0%
GAGGGAAATGCTTGTATGGA+TGG + chr4_2:55576634-55576653 None:intergenic 45.0%
CCAGTGAGGAAGTTTCATGT+TGG + chr4_2:55578181-55578200 None:intergenic 45.0%
CCAACATGAAACTTCCTCAC+TGG - chr4_2:55578178-55578197 Msa0608450:intron 45.0%
!!! ACTCTTGCAGGTTTTGGATC+TGG - chr4_2:55578842-55578861 Msa0608450:intron 45.0%
ATGTCATACCATGTGCGCTA+AGG + chr4_2:55578891-55578910 None:intergenic 45.0%
TGAAGATTGCTCTTCTTGCG+GGG - chr4_2:55579235-55579254 Msa0608450:intron 45.0%
GGCTTTGCTTGCAACTATCT+AGG + chr4_2:55579293-55579312 None:intergenic 45.0%
AAGCAAAGCCCTGTGATCAA+AGG - chr4_2:55579303-55579322 Msa0608450:intron 45.0%
CCTGAGTGACAAGTGTGTAA+AGG + chr4_2:55579766-55579785 None:intergenic 45.0%
CCTTTACACACTTGTCACTC+AGG - chr4_2:55579763-55579782 Msa0608450:intron 45.0%
AGCGGTCCTTCCTATTGAAA+CGG + chr4_2:55579963-55579982 None:intergenic 45.0%
GATGGGGTCTAACATGAGAA+AGG - chr4_2:55580187-55580206 Msa0608450:intron 45.0%
TTCACGGACCATGTTACACA+AGG - chr4_2:55580215-55580234 Msa0608450:intron 45.0%
TATGACGGTGAGATCTCCTT+TGG - chr4_2:55580626-55580645 Msa0608450:CDS 45.0%
TATGTGGGTAGTAGTAGCAG+AGG - chr4_2:55580653-55580672 Msa0608450:CDS 45.0%
! GTAGTAGTAGCAGAGGCATA+GGG - chr4_2:55580660-55580679 Msa0608450:CDS 45.0%
! TAGTAGTAGCAGAGGCATAG+GGG - chr4_2:55580661-55580680 Msa0608450:CDS 45.0%
!!! ACTTTTTATTTTAAATAAAA+AGG + chr4_2:55574842-55574861 None:intergenic 5.0%
!! TACAATTTATTATATTTAAA+GGG - chr4_2:55579160-55579179 Msa0608450:intron 5.0%
AGGTCTCCACAAATTGGCTG+AGG - chr4_2:55574539-55574558 Msa0608450:CDS 50.0%
TTTGGTCAAAGCCTTCCCCA+TGG + chr4_2:55574760-55574779 None:intergenic 50.0%
CCATGCATGAAATCCCAGTG+AGG + chr4_2:55578195-55578214 None:intergenic 50.0%
CCTCACTGGGATTTCATGCA+TGG - chr4_2:55578192-55578211 Msa0608450:intron 50.0%
CACTGGGATTTCATGCATGG+TGG - chr4_2:55578195-55578214 Msa0608450:intron 50.0%
CTTCCAGAGTTGTTACCAGG+AGG + chr4_2:55580488-55580507 None:intergenic 50.0%
CCACTTCCAGAGTTGTTACC+AGG + chr4_2:55580491-55580510 None:intergenic 50.0%
! CCTGGTAACAACTCTGGAAG+TGG - chr4_2:55580488-55580507 Msa0608450:intron 50.0%
! CAACTCTGGAAGTGGAGAAG+AGG - chr4_2:55580496-55580515 Msa0608450:intron 50.0%
CTCACCGTCATAGATTCCTC+TGG + chr4_2:55580618-55580637 None:intergenic 50.0%
! GGTAGTAGTAGCAGAGGCAT+AGG - chr4_2:55580659-55580678 Msa0608450:CDS 50.0%
TGTGACTGCAGGGCAAGGTA+GGG - chr4_2:55575605-55575624 Msa0608450:intron 55.0%
CACACACACACACACACGCA+AGG - chr4_2:55578688-55578707 Msa0608450:intron 55.0%
! GTAGTGACTAGTCCTCCTCC+TGG - chr4_2:55580470-55580489 Msa0608450:intron 55.0%
CCAGAGTTGTTACCAGGAGG+AGG + chr4_2:55580485-55580504 None:intergenic 55.0%
CCTCCTCCTGGTAACAACTC+TGG - chr4_2:55580482-55580501 Msa0608450:intron 55.0%
TTGCCTGTGACTGCAGGGCA+AGG - chr4_2:55575600-55575619 Msa0608450:intron 60.0%
CTACCTTGCCCTGCAGTCAC+AGG + chr4_2:55575606-55575625 None:intergenic 60.0%
CTGTGACTGCAGGGCAAGGT+AGG - chr4_2:55575604-55575623 Msa0608450:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 55574438 55580736 55574438 ID=Msa0608450;Name=Msa0608450
chr4_2 mRNA 55574438 55580736 55574438 ID=Msa0608450-mRNA-1;Parent=Msa0608450;Name=Msa0608450-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|1|1|13|0|546
chr4_2 exon 55580614 55580736 55580614 ID=Msa0608450-mRNA-1:exon:14178;Parent=Msa0608450-mRNA-1
chr4_2 exon 55580016 55580117 55580016 ID=Msa0608450-mRNA-1:exon:14177;Parent=Msa0608450-mRNA-1
chr4_2 exon 55579442 55579558 55579442 ID=Msa0608450-mRNA-1:exon:14176;Parent=Msa0608450-mRNA-1
chr4_2 exon 55578098 55578158 55578098 ID=Msa0608450-mRNA-1:exon:14175;Parent=Msa0608450-mRNA-1
chr4_2 exon 55577860 55577948 55577860 ID=Msa0608450-mRNA-1:exon:14174;Parent=Msa0608450-mRNA-1
chr4_2 exon 55577019 55577093 55577019 ID=Msa0608450-mRNA-1:exon:14173;Parent=Msa0608450-mRNA-1
chr4_2 exon 55576580 55576674 55576580 ID=Msa0608450-mRNA-1:exon:14172;Parent=Msa0608450-mRNA-1
chr4_2 exon 55576273 55576322 55576273 ID=Msa0608450-mRNA-1:exon:14171;Parent=Msa0608450-mRNA-1
chr4_2 exon 55576058 55576098 55576058 ID=Msa0608450-mRNA-1:exon:14170;Parent=Msa0608450-mRNA-1
chr4_2 exon 55575761 55575934 55575761 ID=Msa0608450-mRNA-1:exon:14169;Parent=Msa0608450-mRNA-1
chr4_2 exon 55575628 55575663 55575628 ID=Msa0608450-mRNA-1:exon:14168;Parent=Msa0608450-mRNA-1
chr4_2 exon 55575390 55575518 55575390 ID=Msa0608450-mRNA-1:exon:14167;Parent=Msa0608450-mRNA-1
chr4_2 exon 55574438 55574986 55574438 ID=Msa0608450-mRNA-1:exon:14166;Parent=Msa0608450-mRNA-1
chr4_2 CDS 55580614 55580736 55580614 ID=Msa0608450-mRNA-1:cds;Parent=Msa0608450-mRNA-1
chr4_2 CDS 55580016 55580117 55580016 ID=Msa0608450-mRNA-1:cds;Parent=Msa0608450-mRNA-1
chr4_2 CDS 55579442 55579558 55579442 ID=Msa0608450-mRNA-1:cds;Parent=Msa0608450-mRNA-1
chr4_2 CDS 55578098 55578158 55578098 ID=Msa0608450-mRNA-1:cds;Parent=Msa0608450-mRNA-1
chr4_2 CDS 55577860 55577948 55577860 ID=Msa0608450-mRNA-1:cds;Parent=Msa0608450-mRNA-1
chr4_2 CDS 55577019 55577093 55577019 ID=Msa0608450-mRNA-1:cds;Parent=Msa0608450-mRNA-1
chr4_2 CDS 55576580 55576674 55576580 ID=Msa0608450-mRNA-1:cds;Parent=Msa0608450-mRNA-1
chr4_2 CDS 55576273 55576322 55576273 ID=Msa0608450-mRNA-1:cds;Parent=Msa0608450-mRNA-1
chr4_2 CDS 55576058 55576098 55576058 ID=Msa0608450-mRNA-1:cds;Parent=Msa0608450-mRNA-1
chr4_2 CDS 55575761 55575934 55575761 ID=Msa0608450-mRNA-1:cds;Parent=Msa0608450-mRNA-1
chr4_2 CDS 55575628 55575663 55575628 ID=Msa0608450-mRNA-1:cds;Parent=Msa0608450-mRNA-1
chr4_2 CDS 55575390 55575518 55575390 ID=Msa0608450-mRNA-1:cds;Parent=Msa0608450-mRNA-1
chr4_2 CDS 55574438 55574986 55574438 ID=Msa0608450-mRNA-1:cds;Parent=Msa0608450-mRNA-1
Gene Sequence

>Msa0608450

ATGGCCATAGAAGGAGAACAAAGATCTCTTGAAGAAACCCCAACATGGGCTGTATCAGTTTGTTGCTTCTTTGTCCTTGTTATATCATTGCTCATTGAAGGAGGTCTCCACAAATTGGCTGAGGATGTAGCAAATTCTTTCCGGCCATGTAAAGATTCTGAGTACTTAGCAGGTGATCATGCAAGAAAAGAATTGGGATACCACGAGAACTATTGTGAAGCAAAGGGCAAGGTAGGGCTAATTTCAAGTGAAGGAATCCTGGAGCTAAATATCTTAATCTCCATTTTGGCTGTGTTTCATATCCTTTACTGTACATTAACAATGTGTCTTGGGAAGGCTAAGATGAGAAGATGGAAAAAATGGGAGGAGGAGACTCAAACACTTGAATATCAGATAGACAATGATTCAAGAAGATTCCAGTATATAAGTCAAACATTGGGTGGCAAGCGTCATTTTAAATTCTGGAATAATTATTCTCCCTTGCTGTGGATTGTATGTTTTATGCGGCAGTTCTATAATTCAGTCTCAAAAGATGATTACTTTGCTCTACGAAATGGGTTCATTGCAAAAAACATTTCTGAAGGCAGTAATTTTAATTTCAACTTCAAGAAATTTCTTTCCCGCACTTATGATGAAGATTTTGAGAAGGTTGTTGGAATCAGGTTTTGGATCTGGCTTTTTTCCATATTTTTCATATTCCTTAGCGCACATGAGTTTTATAATTACTACTGGCTTCCATTTATTCCACTTGTGATTGCTCTTCTTGCGGGGACTAAACTGCAAGTGATAATAACAAAGATGCACCTAGATAGTTGCAAGCAAAGCCCTGTGATCAAAGGAACCATACTTGTAAAACCAAGTGATGAATATTTTTGGTTTCATAAACCTGAATGGCTTCTCCATTTAATCCAAATCATCCTTATCCAGAACTCCTTTCAACTTGCATTTTTCACTTGGAGTTGGTATGAATTTGGTCCAAGGTCTTGCTTCAATAGAGAAAAAGAGGACATTGCCATAAGGATTGCATTGGGTTTAGCTGTTCAGCTTCTTTGTGCTTATGTCACTCTACCCCTTTACACACTTGTCACTCAGATGGGGTCTAACATGAGAAAGGAAATTTTCACGGACCATGTTACACAAGGTCTAAAAAATTGGCATAAAAAGGCTAAGCAATCTCTTTCCAAAAGCAACAACAACTCAGTTTCTTTACATTCAAGAACAAGTGAGAATTCAGTAAGGAGATCTTTATCTATAGAGAGTATGCACAATAATAATAAGGTGGAAAATGTCTCAGTAAGAAGATCTTTATCTATAGAGAGTATGCTCAACAACAATAAGGTGGAAAATGAAGACATGCAATCACCAAAAGTAATTGTAGTGACTAGTCCTCCTCCTGGTAACAACTCTGGAAGTGGAGAAGAGGAAGAGATTGTTAATGTAGCAAGTGTTGAGCAAGAGATATCAAGTGAATCCACTTCCGAAATAAAGACTGTTGAGGAAAATAATGGTAAGATCATCACCAGAGGAATCTATGACGGTGAGATCTCCTTTGGAGTTTATGTGGGTAGTAGTAGCAGAGGCATAGGGGAAATTGTTTCAATAGCTGAAGAAGATGATGATGACACCAGTGATAAAAATTAA

Protein sequence

>Msa0608450

MAIEGEQRSLEETPTWAVSVCCFFVLVISLLIEGGLHKLAEDVANSFRPCKDSEYLAGDHARKELGYHENYCEAKGKVGLISSEGILELNILISILAVFHILYCTLTMCLGKAKMRRWKKWEEETQTLEYQIDNDSRRFQYISQTLGGKRHFKFWNNYSPLLWIVCFMRQFYNSVSKDDYFALRNGFIAKNISEGSNFNFNFKKFLSRTYDEDFEKVVGIRFWIWLFSIFFIFLSAHEFYNYYWLPFIPLVIALLAGTKLQVIITKMHLDSCKQSPVIKGTILVKPSDEYFWFHKPEWLLHLIQIILIQNSFQLAFFTWSWYEFGPRSCFNREKEDIAIRIALGLAVQLLCAYVTLPLYTLVTQMGSNMRKEIFTDHVTQGLKNWHKKAKQSLSKSNNNSVSLHSRTSENSVRRSLSIESMHNNNKVENVSVRRSLSIESMLNNNKVENEDMQSPKVIVVTSPPPGNNSGSGEEEEIVNVASVEQEISSESTSEIKTVEENNGKIITRGIYDGEISFGVYVGSSSRGIGEIVSIAEEDDDDTSDKN*