AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0619150

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0619150 MtrunA17_Chr4g0048781 79.730 148 25 1 1 143 158 305 1.34e-81 242
Msa0619150 MtrunA17_Chr4g0048661 85.811 148 16 1 1 143 207 354 7.14e-81 242
Msa0619150 MtrunA17_Chr4g0048711 91.367 139 7 1 1 134 99 237 1.26e-80 241
Msa0619150 MtrunA17_Chr4g0048711 82.243 107 14 1 1 102 256 362 2.25e-55 177
Msa0619150 MtrunA17_Chr4g0048791 82.432 148 19 2 1 143 702 847 2.48e-75 239
Msa0619150 MtrunA17_Chr4g0048681 83.108 148 20 1 1 143 450 597 1.95e-74 232
Msa0619150 MtrunA17_Chr4g0048641 78.378 148 27 1 1 143 628 775 1.35e-73 233
Msa0619150 MtrunA17_Chr4g0048741 82.432 148 21 1 1 143 702 849 1.77e-71 229
Msa0619150 MtrunA17_Chr4g0048731 85.470 117 12 1 1 112 216 332 1.28e-67 208
Msa0619150 MtrunA17_Chr4g0048801 49.664 149 69 2 1 143 688 836 4.92e-40 142
Msa0619150 MtrunA17_Chr4g0048631 45.033 151 75 3 1 143 702 852 1.61e-35 129
Msa0619150 MtrunA17_Chr2g0280711 43.137 153 77 3 1 143 700 852 2.85e-33 123
Msa0619150 MtrunA17_Chr6g0453561 44.371 151 76 3 1 143 37 187 5.02e-33 115
Msa0619150 MtrunA17_Chr8g0357781 43.243 148 76 3 1 142 1 146 3.57e-32 111
Msa0619150 MtrunA17_Chr3g0078541 41.892 148 79 2 1 143 700 845 7.40e-32 119
Msa0619150 MtrunA17_Chr2g0280691 45.638 149 71 5 1 143 696 840 9.15e-32 118
Msa0619150 MtrunA17_Chr3g0078531 41.216 148 80 2 1 143 697 842 1.09e-31 118
Msa0619150 MtrunA17_Chr7g0236531 42.000 150 80 3 1 143 208 357 1.52e-31 115
Msa0619150 MtrunA17_Chr8g0357691 50.847 118 52 2 1 112 648 765 1.81e-31 117
Msa0619150 MtrunA17_Chr8g0354331 42.484 153 75 4 1 143 270 419 2.01e-31 115
Msa0619150 MtrunA17_Chr8g0354391 41.722 151 80 3 1 143 104 254 5.05e-31 111
Msa0619150 MtrunA17_Chr3g0081071 42.857 147 73 3 1 141 99 240 9.68e-31 110
Msa0619150 MtrunA17_Chr3g0081001 45.033 151 74 4 1 143 513 662 1.21e-30 115
Msa0619150 MtrunA17_Chr3g0078521 41.892 148 79 2 1 143 689 834 1.33e-30 115
Msa0619150 MtrunA17_Chr3g0092301 41.892 148 81 1 1 143 100 247 1.90e-30 110
Msa0619150 MtrunA17_Chr2g0280701 44.295 149 75 4 1 143 670 816 3.13e-30 114
Msa0619150 MtrunA17_Chr2g0280761 40.940 149 81 3 1 143 1 148 3.16e-30 106
Msa0619150 MtrunA17_Chr3g0078551 39.597 149 84 2 1 143 694 842 4.37e-30 114
Msa0619150 MtrunA17_Chr8g0357631 50.000 118 53 2 1 112 638 755 4.42e-30 114
Msa0619150 MtrunA17_Chr8g0357651 50.000 118 53 2 1 112 640 757 1.24e-29 112
Msa0619150 MtrunA17_Chr4g0042401 41.722 151 80 3 1 143 673 823 1.28e-29 112
Msa0619150 MtrunA17_Chr8g0357761 50.833 120 49 4 1 112 650 767 1.35e-29 112
Msa0619150 MtrunA17_Chr4g0055011 43.791 153 73 4 1 143 241 390 1.48e-29 110
Msa0619150 MtrunA17_Chr4g0042361 39.865 148 84 1 1 143 709 856 1.75e-29 112
Msa0619150 MtrunA17_Chr8g0361281 45.390 141 71 2 1 135 683 823 1.83e-29 112
Msa0619150 MtrunA17_Chr1g0206321 44.444 126 63 3 1 119 1 126 1.94e-29 105
Msa0619150 MtrunA17_Chr7g0236551 43.421 152 75 4 1 143 658 807 2.21e-29 112
Msa0619150 MtrunA17_Chr7g0236651 43.624 149 71 4 1 143 655 796 2.25e-29 112
Msa0619150 MtrunA17_Chr8g0361141 42.763 152 75 5 1 143 686 834 2.36e-29 111
Msa0619150 MtrunA17_Chr8g0357831 53.333 105 44 1 1 100 362 466 2.76e-29 110
Msa0619150 MtrunA17_Chr4g0042431 37.333 150 87 3 1 143 1 150 3.63e-29 103
Msa0619150 MtrunA17_Chr3g0084661 41.060 151 73 4 1 143 203 345 4.00e-29 108
Msa0619150 MtrunA17_Chr3g0082941 47.458 118 56 2 1 112 343 460 4.05e-29 110
Msa0619150 MtrunA17_Chr3g0098781 39.735 151 80 3 1 143 81 228 4.98e-29 105
Msa0619150 MtrunA17_Chr4g0023111 44.697 132 66 3 1 126 884 1014 5.48e-29 110
Msa0619150 MtrunA17_Chr8g0357921 45.000 120 60 2 1 114 1 120 7.89e-29 103
Msa0619150 MtrunA17_Chr8g0357661 45.763 118 58 2 1 112 33 150 9.25e-29 103
Msa0619150 MtrunA17_Chr8g0340051 44.371 151 76 4 1 143 199 349 1.13e-28 107
Msa0619150 MtrunA17_Chr8g0357961 42.177 147 77 3 1 141 654 798 1.68e-28 109
Msa0619150 MtrunA17_Chr8g0358101 43.243 148 75 4 1 142 634 778 1.75e-28 109
Msa0619150 MtrunA17_Chr3g0084631 37.838 148 82 2 1 143 33 175 2.18e-28 102
Msa0619150 MtrunA17_Chr2g0280751 42.953 149 77 4 1 143 696 842 2.21e-28 108
Msa0619150 MtrunA17_Chr7g0236561 41.722 151 78 3 1 143 675 823 2.36e-28 108
Msa0619150 MtrunA17_Chr4g0042441 40.397 151 82 3 1 143 670 820 2.40e-28 108
Msa0619150 MtrunA17_Chr3g0093161 41.611 149 81 2 1 143 667 815 2.70e-28 108
Msa0619150 MtrunA17_Chr8g0357991 41.497 147 78 3 1 141 655 799 2.80e-28 108
Msa0619150 MtrunA17_Chr8g0361161 41.447 152 77 5 1 143 214 362 3.27e-28 106
Msa0619150 MtrunA17_Chr7g0236471 40.789 152 79 4 1 143 510 659 3.41e-28 108
Msa0619150 MtrunA17_Chr8g0358061 43.704 135 68 3 1 129 226 358 4.52e-28 106
Msa0619150 MtrunA17_Chr4g0042351 44.538 119 60 2 1 113 623 741 4.88e-28 108
Msa0619150 MtrunA17_Chr8g0357881 42.568 148 77 3 1 142 646 791 5.78e-28 107
Msa0619150 MtrunA17_Chr8g0354441 41.333 150 81 3 1 143 520 669 8.01e-28 107
Msa0619150 MtrunA17_Chr8g0340081 42.667 150 79 3 1 143 677 826 9.25e-28 107
Msa0619150 MtrunA17_Chr3g0081011 42.000 150 80 3 1 143 509 658 1.01e-27 107
Msa0619150 MtrunA17_Chr3g0081101 38.514 148 82 3 5 143 12 159 1.21e-27 100
Msa0619150 MtrunA17_Chr8g0357981 41.216 148 79 3 1 142 475 620 1.23e-27 106
Msa0619150 MtrunA17_Chr8g0354421 42.000 150 80 3 1 143 533 682 1.31e-27 106
Msa0619150 MtrunA17_Chr8g0358121 43.609 133 69 2 1 127 632 764 1.51e-27 106
Msa0619150 MtrunA17_Chr8g0358081 47.458 118 56 2 1 112 631 748 1.63e-27 106
Msa0619150 MtrunA17_Chr7g0236691 45.528 123 61 2 1 117 670 792 2.08e-27 106
Msa0619150 MtrunA17_Chr8g0361341 37.838 148 81 3 1 143 8 149 2.25e-27 99.4
Msa0619150 MtrunA17_Chr2g0280781 41.611 149 75 3 1 143 680 822 2.41e-27 106
Msa0619150 MtrunA17_Chr8g0357711 48.333 120 52 4 1 112 647 764 2.50e-27 105
Msa0619150 MtrunA17_Chr1g0206351 45.238 126 61 4 1 119 523 647 2.82e-27 105
Msa0619150 MtrunA17_Chr8g0340071 42.667 150 79 3 1 143 673 822 3.01e-27 105
Msa0619150 MtrunA17_Chr2g0280801 40.940 149 80 4 1 143 697 843 3.14e-27 105
Msa0619150 MtrunA17_Chr8g0358071 47.458 118 56 2 1 112 646 763 3.40e-27 105
Msa0619150 MtrunA17_Chr2g0280791 40.940 149 80 4 1 143 691 837 3.52e-27 105
Msa0619150 MtrunA17_Chr2g0280681 41.892 148 76 5 1 139 671 817 3.53e-27 105
Msa0619150 MtrunA17_Chr8g0361441 38.667 150 84 3 1 143 676 824 3.84e-27 105
Msa0619150 MtrunA17_Chr8g0347571 42.384 151 74 4 1 141 740 887 4.03e-27 105
Msa0619150 MtrunA17_Chr2g0280831 40.541 148 80 4 1 142 265 410 4.23e-27 103
Msa0619150 MtrunA17_Chr8g0354431 42.000 150 80 3 1 143 512 661 4.58e-27 105
Msa0619150 MtrunA17_Chr8g0358141 46.610 118 57 2 1 112 248 365 4.60e-27 103
Msa0619150 MtrunA17_Chr4g0048581 47.458 118 51 4 1 110 701 815 4.67e-27 105
Msa0619150 MtrunA17_Chr8g0354281 44.915 118 59 2 1 112 505 622 5.17e-27 105
Msa0619150 MtrunA17_Chr8g0360201 41.447 152 77 5 1 143 576 724 5.29e-27 105
Msa0619150 MtrunA17_Chr5g0393981 41.333 150 74 4 1 136 566 715 6.41e-27 104
Msa0619150 MtrunA17_Chr4g0023221 40.667 150 80 4 1 143 900 1047 6.51e-27 104
Msa0619150 MtrunA17_Chr8g0354351 42.000 150 80 3 1 143 503 652 6.98e-27 104
Msa0619150 MtrunA17_Chr7g0236641 41.333 150 81 3 1 143 695 844 7.09e-27 104
Msa0619150 MtrunA17_Chr8g0358031 44.444 135 67 3 1 129 649 781 8.80e-27 104
Msa0619150 MtrunA17_Chr8g0340111 45.528 123 61 2 1 117 675 797 1.71e-26 103
Msa0619150 MtrunA17_Chr4g0065561 38.667 150 82 4 3 143 618 766 2.30e-26 103
Msa0619150 MtrunA17_Chr8g0361261 41.216 148 76 2 1 143 707 848 2.47e-26 103
Msa0619150 MtrunA17_Chr8g0354271 48.739 119 54 3 1 112 505 623 3.12e-26 102
Msa0619150 MtrunA17_Chr4g0042341 37.162 148 85 2 1 143 693 837 4.17e-26 102
Msa0619150 MtrunA17_Chr3g0084681 38.961 154 73 4 1 143 634 777 4.21e-26 102
Msa0619150 MtrunA17_Chr1g0154331 44.615 130 64 4 1 124 209 336 4.27e-26 100
Msa0619150 MtrunA17_Chr1g0206331 43.066 137 71 3 1 131 505 640 4.27e-26 102
Msa0619150 MtrunA17_Chr1g0206551 40.523 153 75 6 1 138 205 356 4.30e-26 100
Msa0619150 MtrunA17_Chr3g0084411 37.500 152 86 2 1 143 669 820 4.67e-26 102
Msa0619150 MtrunA17_Chr8g0361301 41.216 148 76 2 1 143 676 817 6.36e-26 102
Msa0619150 MtrunA17_Chr8g0340091 41.060 151 81 4 1 143 702 852 8.55e-26 101
Msa0619150 MtrunA17_Chr4g0042381 43.220 118 61 2 1 112 623 740 9.31e-26 101
Msa0619150 MtrunA17_Chr1g0206261 42.949 156 75 7 1 143 258 412 9.46e-26 100
Msa0619150 MtrunA17_Chr7g0236341 44.715 123 61 3 1 117 688 809 1.07e-25 101
Msa0619150 MtrunA17_Chr3g0081031 38.667 150 85 3 1 143 522 671 1.19e-25 101
Msa0619150 MtrunA17_Chr3g0084431 38.514 148 85 2 1 143 664 810 1.30e-25 101
Msa0619150 MtrunA17_Chr2g0323231 42.017 119 63 2 1 113 348 466 1.42e-25 100
Msa0619150 MtrunA17_Chr3g0084451 42.105 152 75 5 1 143 676 823 1.51e-25 100
Msa0619150 MtrunA17_Chr7g0236201 46.341 123 59 3 1 117 640 761 1.72e-25 100
Msa0619150 MtrunA17_Chr1g0206361 38.217 157 83 3 1 143 513 669 1.91e-25 100
Msa0619150 MtrunA17_Chr7g0236121 46.341 123 59 3 1 117 674 795 2.13e-25 100
Msa0619150 MtrunA17_Chr1g0206391 39.073 151 75 3 1 134 210 360 3.22e-25 98.6
Msa0619150 MtrunA17_Chr5g0428581 41.860 129 67 4 1 122 214 341 3.65e-25 98.6
Msa0619150 MtrunA17_Chr3g0119041 44.068 118 60 2 1 112 510 627 4.01e-25 99.8
Msa0619150 MtrunA17_Chr5g0428111 44.915 118 60 1 1 113 673 790 4.54e-25 99.8
Msa0619150 MtrunA17_Chr4g0042391 43.590 117 60 2 1 111 623 739 5.07e-25 99.4
Msa0619150 MtrunA17_Chr2g0318811 39.735 151 78 5 1 143 670 815 5.51e-25 99.4
Msa0619150 MtrunA17_Chr1g0154311 41.447 152 78 5 1 143 521 670 6.43e-25 99.0
Msa0619150 MtrunA17_Chr2g0318841 45.000 120 56 4 1 112 671 788 6.96e-25 99.0
Msa0619150 MtrunA17_Chr2g0280731 37.838 148 86 2 1 143 720 866 7.49e-25 99.0
Msa0619150 MtrunA17_Chr1g0154371 40.268 149 80 5 1 141 526 673 9.41e-25 98.6
Msa0619150 MtrunA17_Chr5g0426941 40.690 145 74 5 1 134 509 652 1.01e-24 98.6
Msa0619150 MtrunA17_Chr1g0206561 39.869 153 76 6 1 138 499 650 1.15e-24 98.6
Msa0619150 MtrunA17_Chr7g0236231 43.548 124 62 4 1 117 688 810 1.18e-24 98.6
Msa0619150 MtrunA17_Chr3g0084691 43.220 118 61 2 1 112 692 809 1.68e-24 97.8
Msa0619150 MtrunA17_Chr1g0154321 42.537 134 66 3 1 129 538 665 1.75e-24 97.8
Msa0619150 MtrunA17_Chr1g0154351 39.597 149 82 4 1 143 528 674 2.00e-24 97.8
Msa0619150 MtrunA17_Chr2g0318831 41.447 152 74 5 1 143 672 817 2.38e-24 97.4
Msa0619150 MtrunA17_Chr5g0394011 39.073 151 82 4 1 143 521 669 2.47e-24 97.4
Msa0619150 MtrunA17_Chr4g0065521 38.095 147 80 4 3 141 209 352 3.25e-24 95.5
Msa0619150 MtrunA17_Chr3g0084491 39.333 150 82 4 1 143 676 823 4.34e-24 96.7
Msa0619150 MtrunA17_Chr3g0084441 39.735 151 80 4 1 143 676 823 4.92e-24 96.7
Msa0619150 MtrunA17_Chr8g0357871 48.000 100 44 2 1 95 1 97 4.94e-24 90.1
Msa0619150 MtrunA17_Chr4g0065541 36.986 146 83 5 3 141 610 753 5.97e-24 96.3
Msa0619150 MtrunA17_Chr8g0361251 37.162 148 82 3 1 143 676 817 6.45e-24 96.3
Msa0619150 MtrunA17_Chr3g0084421 36.184 152 88 2 1 143 632 783 7.00e-24 96.3
Msa0619150 MtrunA17_Chr5g0428101 39.189 148 79 2 1 143 671 812 7.98e-24 95.9
Msa0619150 MtrunA17_Chr6g0475131 38.667 150 84 4 1 143 179 327 1.26e-23 93.6
Msa0619150 MtrunA17_Chr5g0422921 43.220 118 62 1 1 113 668 785 2.92e-23 94.4
Msa0619150 MtrunA17_Chr1g0205771 41.600 125 67 2 1 119 513 637 3.62e-23 94.0
Msa0619150 MtrunA17_Chr6g0475111 41.406 128 69 2 1 122 757 884 4.07e-23 94.0
Msa0619150 MtrunA17_Chr8g0361431 39.669 121 68 1 1 116 654 774 5.58e-23 93.6
Msa0619150 MtrunA17_Chr4g0020081 38.667 150 83 5 1 143 681 828 6.73e-23 93.6
Msa0619150 MtrunA17_Chr1g0206401 37.086 151 78 3 1 134 520 670 2.47e-22 91.7
Msa0619150 MtrunA17_Chr7g0236511 39.259 135 76 3 13 143 667 799 2.78e-22 91.7
Msa0619150 MtrunA17_Chr6g0474811 42.623 122 63 3 1 115 743 864 6.11e-22 90.5
Msa0619150 MtrunA17_Chr7g0236571 41.228 114 61 2 6 113 510 623 7.92e-22 90.1
Msa0619150 MtrunA17_Chr5g0394021 44.915 118 57 3 1 112 491 606 9.75e-22 90.1
Msa0619150 MtrunA17_Chr6g0474901 41.803 122 64 3 1 115 736 857 1.20e-21 89.7
Msa0619150 MtrunA17_Chr6g0474991 40.984 122 65 3 1 115 33 154 1.37e-21 85.5
Msa0619150 MtrunA17_Chr5g0394001 35.220 159 86 4 1 143 500 657 2.13e-21 89.0
Msa0619150 MtrunA17_Chr6g0474861 40.984 122 65 3 1 115 456 577 2.45e-21 89.0
Msa0619150 MtrunA17_Chr6g0474871 40.984 122 65 3 1 115 735 856 2.76e-21 89.0
Msa0619150 MtrunA17_Chr6g0475091 40.476 126 68 3 1 119 751 876 4.16e-21 88.2
Msa0619150 MtrunA17_Chr6g0475201 38.971 136 71 4 1 124 744 879 4.40e-21 88.2
Msa0619150 MtrunA17_Chr8g0354291 40.777 103 59 2 43 143 2 104 2.53e-20 80.1
Msa0619150 MtrunA17_Chr6g0475181 36.567 134 59 4 1 123 1 119 8.90e-20 79.3
Msa0619150 MtrunA17_Chr6g0474851 40.984 122 65 3 1 115 98 219 3.78e-19 80.5
Msa0619150 MtrunA17_Chr1g0206461 41.880 117 61 3 1 111 503 618 4.15e-19 82.4
Msa0619150 MtrunA17_Chr1g0206231 35.484 155 85 6 1 143 516 667 5.79e-19 82.0
Msa0619150 MtrunA17_Chr1g0206521 38.298 141 79 4 1 134 1147 1286 1.40e-18 81.3
Msa0619150 MtrunA17_Chr1g0206521 41.880 117 61 3 1 111 505 620 1.83e-18 80.9
Msa0619150 MtrunA17_Chr7g0236161 39.831 118 55 3 1 117 640 742 4.81e-18 79.3
Msa0619150 MtrunA17_Chr8g0376131 36.522 115 68 1 1 110 221 335 1.20e-17 78.2
Msa0619150 MtrunA17_Chr1g0206431 42.000 100 52 2 1 95 55 153 1.67e-17 75.5
Msa0619150 MtrunA17_Chr1g0206451 43.434 99 50 2 1 94 542 639 4.39e-17 76.6
Msa0619150 MtrunA17_Chr6g0484231 33.333 117 71 3 1 111 218 333 6.91e-17 75.9
Msa0619150 MtrunA17_Chr1g0206531 41.000 100 53 2 1 95 507 605 1.96e-16 74.7
Msa0619150 MtrunA17_Chr7g0226891 37.815 119 66 3 1 113 218 334 2.15e-16 74.3
Msa0619150 MtrunA17_Chr3g0109411 35.000 120 70 3 2 113 494 613 2.12e-15 72.0
Msa0619150 MtrunA17_Chr1g0206221 36.842 114 64 4 7 113 1 113 2.90e-15 68.2
Msa0619150 MtrunA17_Chr2g0312561 32.812 128 78 3 1 121 212 338 3.42e-15 70.9
Msa0619150 MtrunA17_Chr8g0358161 34.459 148 58 4 1 142 216 330 1.59e-14 68.9
Msa0619150 MtrunA17_Chr2g0312571 32.812 128 78 3 1 121 217 343 7.37e-14 67.4
Msa0619150 MtrunA17_Chr2g0281241 41.000 100 42 3 1 95 224 311 9.24e-14 66.6
Msa0619150 MtrunA17_Chr1g0181341 35.246 122 69 3 1 113 217 337 2.68e-13 65.5
Msa0619150 MtrunA17_Chr2g0314861 32.258 124 78 2 1 118 89 212 3.00e-13 65.1
Msa0619150 MtrunA17_Chr1g0206421 32.215 149 89 4 1 140 398 543 3.11e-13 65.5
Msa0619150 MtrunA17_Chr8g0359691 33.929 112 69 1 1 107 833 944 3.23e-13 65.9
Msa0619150 MtrunA17_Chr2g0315151 33.036 112 70 1 1 107 835 946 3.42e-13 65.5
Msa0619150 MtrunA17_Chr5g0428511 36.538 104 56 3 44 138 2 104 4.80e-13 61.2
Msa0619150 MtrunA17_Chr2g0314881 35.922 103 61 1 1 98 398 500 5.58e-13 65.1
Msa0619150 MtrunA17_Chr1g0160921 32.773 119 72 3 1 111 220 338 9.23e-13 64.3
Msa0619150 MtrunA17_Chr3g0109431 32.667 150 93 3 2 143 497 646 1.02e-12 64.3
Msa0619150 MtrunA17_Chr7g0239371 33.945 109 67 1 1 104 507 615 1.22e-12 63.9
Msa0619150 MtrunA17_Chr2g0314821 34.951 103 62 1 1 98 833 935 1.95e-12 63.5
Msa0619150 MtrunA17_Chr2g0314841 34.951 103 62 1 1 98 830 932 2.55e-12 63.2
Msa0619150 MtrunA17_Chr2g0314991 33.588 131 78 3 1 124 1346 1474 2.92e-12 63.2
Msa0619150 MtrunA17_Chr6g0474961 40.789 76 44 1 41 115 131 206 3.48e-12 61.6
Msa0619150 MtrunA17_Chr3g0109461 34.711 121 70 4 2 113 509 629 4.54e-12 62.4
Msa0619150 MtrunA17_Chr3g0102451 31.624 117 72 4 1 110 495 610 5.39e-12 62.0
Msa0619150 MtrunA17_Chr5g0433941 30.894 123 73 4 1 111 536 658 1.89e-11 60.5
Msa0619150 MtrunA17_Chr5g0428551 35.135 74 47 1 43 115 43 116 2.10e-11 58.2
Msa0619150 MtrunA17_Chr8g0358781 34.906 106 63 2 1 101 511 615 2.29e-11 60.5
Msa0619150 MtrunA17_Chr7g0259211 26.471 136 93 2 1 129 457 592 2.34e-11 60.5
Msa0619150 MtrunA17_Chr4g0048571 36.082 97 50 4 1 88 106 199 5.46e-11 57.8
Msa0619150 MtrunA17_Chr1g0196391 27.737 137 91 3 1 130 468 603 8.66e-11 58.5
Msa0619150 MtrunA17_Chr5g0446651 29.032 124 80 3 1 117 528 650 9.69e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0619150 AT1G65790.1 43.590 156 75 4 1 143 688 843 1.63e-30 115
Msa0619150 AT1G65800.1 50.820 122 50 3 1 112 692 813 5.53e-30 114
Msa0619150 AT1G11410.1 41.026 156 77 5 1 143 692 845 1.03e-29 113
Msa0619150 AT1G11410.4 41.026 156 77 5 1 143 699 852 1.04e-29 113
Msa0619150 AT1G11410.3 41.026 156 77 5 1 143 668 821 1.15e-29 113
Msa0619150 AT1G61430.11 41.892 148 79 2 1 143 635 780 1.26e-29 113
Msa0619150 AT1G61430.12 41.892 148 79 2 1 143 635 780 1.26e-29 113
Msa0619150 AT1G61430.13 41.892 148 79 2 1 143 635 780 1.26e-29 113
Msa0619150 AT1G61430.1 41.892 148 79 2 1 143 661 806 1.35e-29 112
Msa0619150 AT1G61430.9 41.892 148 79 2 1 143 658 803 1.41e-29 112
Msa0619150 AT1G11410.2 41.026 156 77 5 1 143 577 730 1.45e-29 112
Msa0619150 AT1G11340.1 44.079 152 74 5 1 143 684 833 1.56e-29 112
Msa0619150 AT4G03230.2 45.455 121 59 2 1 114 759 879 8.24e-29 110
Msa0619150 AT4G03230.6 45.455 121 59 2 1 114 759 879 8.24e-29 110
Msa0619150 AT4G03230.8 45.833 120 58 2 1 113 701 820 8.50e-29 110
Msa0619150 AT4G03230.5 45.455 121 59 2 1 114 787 907 9.10e-29 110
Msa0619150 AT4G03230.4 45.833 120 58 2 1 113 859 978 1.05e-28 110
Msa0619150 AT4G03230.1 45.833 120 58 2 1 113 859 978 1.05e-28 110
Msa0619150 AT4G03230.3 45.833 120 58 2 1 113 694 813 1.05e-28 110
Msa0619150 AT4G03230.7 45.833 120 58 2 1 113 702 821 1.10e-28 110
Msa0619150 AT1G61440.3 40.541 148 81 2 1 143 652 797 6.84e-28 108
Msa0619150 AT1G61440.1 40.541 148 81 2 1 143 647 792 7.82e-28 107
Msa0619150 AT1G61440.2 40.541 148 81 2 1 143 677 822 8.17e-28 107
Msa0619150 AT1G61500.3 40.541 148 80 2 1 143 665 809 2.34e-27 106
Msa0619150 AT4G00970.1 43.046 151 78 4 1 143 515 665 2.38e-27 106
Msa0619150 AT1G61500.2 40.541 148 80 2 1 143 642 786 2.40e-27 106
Msa0619150 AT1G61500.1 40.541 148 80 2 1 143 660 804 2.41e-27 106
Msa0619150 AT1G61490.3 39.865 148 82 2 1 143 509 654 2.47e-27 106
Msa0619150 AT1G61490.6 39.865 148 82 2 1 143 633 778 2.75e-27 106
Msa0619150 AT1G61490.7 39.865 148 82 2 1 143 633 778 2.75e-27 106
Msa0619150 AT1G61490.4 39.865 148 82 2 1 143 659 804 2.79e-27 106
Msa0619150 AT1G61490.1 39.865 148 82 2 1 143 659 804 2.79e-27 106
Msa0619150 AT1G61490.2 39.865 148 82 2 1 143 659 804 2.79e-27 106
Msa0619150 AT1G61490.5 39.865 148 82 2 1 143 659 804 2.79e-27 106
Msa0619150 AT4G23130.1 43.651 126 64 3 1 119 509 634 3.49e-27 105
Msa0619150 AT4G23130.2 43.651 126 64 3 1 119 513 638 3.75e-27 105
Msa0619150 AT4G05200.1 40.441 136 75 2 1 130 516 651 4.72e-27 105
Msa0619150 AT4G05200.2 40.441 136 75 2 1 130 534 669 4.95e-27 105
Msa0619150 AT4G23140.2 42.857 119 62 2 1 113 526 644 1.44e-26 104
Msa0619150 AT1G11330.1 38.667 150 85 3 1 143 691 840 1.59e-26 104
Msa0619150 AT4G23140.1 42.857 119 62 2 1 113 520 638 1.62e-26 103
Msa0619150 AT1G11330.2 38.667 150 85 3 1 143 693 842 1.68e-26 103
Msa0619150 AT1G61420.3 37.838 148 84 2 1 143 513 657 3.42e-26 103
Msa0619150 AT1G61420.5 37.838 148 84 2 1 143 515 659 3.49e-26 103
Msa0619150 AT4G23150.1 44.538 119 60 2 1 113 505 623 3.88e-26 102
Msa0619150 AT1G61420.1 37.838 148 84 2 1 143 663 807 3.89e-26 103
Msa0619150 AT1G61420.2 37.838 148 84 2 1 143 665 809 3.89e-26 103
Msa0619150 AT1G61420.4 37.838 148 84 2 1 143 665 809 3.89e-26 103
Msa0619150 AT4G23320.2 47.107 121 57 3 1 114 352 472 4.66e-26 102
Msa0619150 AT4G23320.1 47.107 121 57 3 1 114 352 472 4.66e-26 102
Msa0619150 AT4G23320.3 47.107 121 57 3 1 114 373 493 4.75e-26 102
Msa0619150 AT1G61480.1 37.162 148 85 2 1 143 665 809 5.05e-26 102
Msa0619150 AT3G45860.1 43.411 129 65 3 1 121 520 648 5.09e-26 102
Msa0619150 AT4G23160.1 40.146 137 71 3 1 126 528 664 7.37e-26 102
Msa0619150 AT4G11470.2 43.307 127 65 3 1 120 513 639 7.63e-26 102
Msa0619150 AT4G23180.1 42.500 120 63 2 1 114 517 636 7.70e-26 102
Msa0619150 AT1G61380.1 41.722 151 78 3 1 143 657 805 7.73e-26 102
Msa0619150 AT4G11470.1 43.307 127 65 3 1 120 508 634 7.84e-26 102
Msa0619150 AT1G61380.2 41.722 151 78 3 1 143 510 658 7.96e-26 102
Msa0619150 AT4G11460.2 43.902 123 62 3 1 116 440 562 8.64e-26 102
Msa0619150 AT1G61400.1 38.514 148 84 2 1 143 669 814 8.86e-26 102
Msa0619150 AT4G11460.1 43.902 123 62 3 1 116 518 640 9.01e-26 102
Msa0619150 AT1G61390.2 40.268 149 77 4 1 143 521 663 9.14e-26 102
Msa0619150 AT1G61400.2 38.514 148 84 2 1 143 677 822 9.31e-26 102
Msa0619150 AT4G11460.3 43.902 123 62 3 1 116 515 637 1.02e-25 101
Msa0619150 AT1G61390.1 40.268 149 77 4 1 143 689 831 1.10e-25 101
Msa0619150 AT4G11900.1 41.216 148 78 2 1 143 706 849 1.11e-25 101
Msa0619150 AT4G11900.9 41.216 148 78 2 1 143 637 780 1.24e-25 101
Msa0619150 AT1G61610.1 36.667 150 87 4 1 143 694 842 1.31e-25 101
Msa0619150 AT4G38830.1 45.600 125 60 3 1 117 514 638 1.49e-25 101
Msa0619150 AT4G21380.1 46.281 121 56 3 1 112 695 815 2.09e-25 100
Msa0619150 AT4G11480.1 43.307 127 65 3 1 120 498 624 2.12e-25 100
Msa0619150 AT4G11480.3 43.307 127 65 3 1 120 493 619 2.16e-25 100
Msa0619150 AT4G11480.4 43.307 127 65 3 1 120 490 616 2.17e-25 100
Msa0619150 AT4G27300.1 40.667 150 79 4 1 143 669 815 2.33e-25 100
Msa0619150 AT1G11280.1 43.697 119 60 2 1 112 684 802 4.26e-25 100
Msa0619150 AT1G11280.3 43.697 119 60 2 1 112 662 780 4.29e-25 100
Msa0619150 AT1G11280.4 43.697 119 60 2 1 112 672 790 4.38e-25 100
Msa0619150 AT1G11280.2 43.697 119 60 2 1 112 674 792 4.60e-25 100
Msa0619150 AT4G23240.2 45.455 121 59 3 1 114 197 317 5.52e-25 98.2
Msa0619150 AT1G61370.2 38.514 148 83 2 1 143 519 663 6.43e-25 99.4
Msa0619150 AT1G61370.1 38.514 148 83 2 1 143 670 814 8.22e-25 99.4
Msa0619150 AT4G00960.2 47.059 119 56 3 1 112 133 251 1.04e-24 96.3
Msa0619150 AT4G23290.1 44.444 126 63 3 1 119 489 614 1.10e-24 99.0
Msa0619150 AT4G00960.3 47.059 119 56 3 1 112 140 258 1.12e-24 96.3
Msa0619150 AT4G23290.2 44.444 126 63 3 1 119 532 657 1.16e-24 99.0
Msa0619150 AT4G21390.1 44.068 118 59 3 1 112 698 814 1.43e-24 98.6
Msa0619150 AT1G67520.8 47.154 123 52 5 1 112 457 577 1.90e-24 98.2
Msa0619150 AT1G67520.7 47.154 123 52 5 1 112 457 577 1.90e-24 98.2
Msa0619150 AT1G67520.4 47.154 123 52 5 1 112 622 742 2.01e-24 98.2
Msa0619150 AT1G67520.3 47.154 123 52 5 1 112 665 785 2.04e-24 98.2
Msa0619150 AT1G67520.6 47.154 123 52 5 1 112 672 792 2.21e-24 98.2
Msa0619150 AT1G67520.5 47.154 123 52 5 1 112 428 548 2.29e-24 97.8
Msa0619150 AT4G00960.1 47.059 119 56 3 1 112 227 345 2.81e-24 96.7
Msa0619150 AT3G16030.1 47.107 121 55 4 1 112 696 816 3.02e-24 97.8
Msa0619150 AT4G11530.1 39.103 156 82 4 1 143 521 676 3.07e-24 97.4
Msa0619150 AT4G23240.1 45.455 121 59 3 1 114 504 624 3.82e-24 97.4
Msa0619150 AT3G16030.6 47.107 121 55 4 1 112 717 837 3.90e-24 97.4
Msa0619150 AT3G16030.2 47.107 121 55 4 1 112 573 693 4.63e-24 97.1
Msa0619150 AT4G23310.2 37.415 147 81 4 1 140 637 779 1.01e-23 96.3
Msa0619150 AT4G23310.1 37.415 147 81 4 1 140 677 819 1.04e-23 96.3
Msa0619150 AT4G27290.2 43.939 132 67 3 1 126 680 810 1.56e-23 95.5
Msa0619150 AT4G27290.1 43.939 132 67 3 1 126 634 764 1.81e-23 95.5
Msa0619150 AT4G23270.2 37.086 151 87 4 1 143 495 645 2.18e-23 95.1
Msa0619150 AT4G23270.1 37.086 151 87 4 1 143 495 645 2.18e-23 95.1
Msa0619150 AT4G21366.1 47.414 116 44 3 1 105 1 110 3.90e-23 87.8
Msa0619150 AT4G23270.3 39.683 126 69 3 1 119 495 620 4.25e-23 94.4
Msa0619150 AT4G23220.1 35.714 154 88 4 1 143 505 658 4.74e-23 94.4
Msa0619150 AT1G61550.1 35.135 148 88 2 1 143 658 802 7.12e-23 93.6
Msa0619150 AT1G11350.1 34.667 150 91 3 1 143 681 830 7.22e-23 93.6
Msa0619150 AT4G23260.2 37.908 153 84 5 1 143 497 648 7.68e-23 93.6
Msa0619150 AT1G11303.1 39.735 151 75 6 1 143 678 820 7.79e-23 93.6
Msa0619150 AT4G23260.1 37.908 153 84 5 1 143 508 659 8.33e-23 93.6
Msa0619150 AT4G23280.3 35.065 154 89 4 1 143 463 616 1.10e-22 93.2
Msa0619150 AT4G23280.1 35.065 154 89 4 1 143 513 666 1.21e-22 93.2
Msa0619150 AT4G23280.2 35.065 154 89 4 1 143 511 664 1.25e-22 92.8
Msa0619150 AT4G21410.1 40.523 153 80 5 1 143 403 554 1.54e-22 92.8
Msa0619150 AT1G11300.1 40.000 150 76 4 1 143 678 820 1.77e-22 92.4
Msa0619150 AT1G11300.2 40.000 150 76 4 1 143 663 805 1.84e-22 92.4
Msa0619150 AT4G21410.3 40.523 153 80 5 1 143 528 679 1.91e-22 92.4
Msa0619150 AT4G23200.1 39.683 126 69 3 1 119 505 630 5.40e-22 91.3
Msa0619150 AT4G11490.1 41.176 119 63 3 1 112 490 608 5.91e-22 90.9
Msa0619150 AT4G23300.1 38.760 129 70 3 1 120 522 650 6.68e-22 90.9
Msa0619150 AT4G23230.1 40.678 118 64 2 1 112 506 623 6.88e-22 90.9
Msa0619150 AT4G23190.1 40.984 122 63 3 1 113 519 640 7.67e-22 90.9
Msa0619150 AT4G23190.3 40.984 122 63 3 1 113 441 562 7.81e-22 90.5
Msa0619150 AT4G23190.4 40.984 122 63 3 1 113 441 562 7.81e-22 90.5
Msa0619150 AT4G21230.1 36.424 151 78 4 1 143 502 642 9.70e-22 90.5
Msa0619150 AT1G61360.1 38.889 144 78 3 1 134 667 810 2.80e-20 86.3
Msa0619150 AT4G21400.8 42.500 120 60 4 1 112 421 539 2.83e-20 86.3
Msa0619150 AT4G21400.1 42.500 120 60 4 1 112 532 650 2.96e-20 86.3
Msa0619150 AT1G61360.2 38.889 144 78 3 1 134 586 729 2.99e-20 86.3
Msa0619150 AT1G61360.3 38.889 144 78 3 1 134 586 729 2.99e-20 86.3
Msa0619150 AT1G61360.4 38.889 144 78 3 1 134 586 729 2.99e-20 86.3
Msa0619150 AT4G21400.2 42.500 120 60 4 1 112 520 638 3.10e-20 86.3
Msa0619150 AT4G21400.7 42.500 120 60 4 1 112 522 640 3.58e-20 85.9
Msa0619150 AT1G61460.1 36.290 124 76 1 20 143 629 749 2.16e-19 83.6
Msa0619150 AT4G23250.3 38.710 124 67 4 1 116 523 645 2.41e-19 83.6
Msa0619150 AT4G23250.1 38.710 124 67 4 1 116 528 650 2.61e-19 83.6
Msa0619150 AT4G23210.3 40.000 115 62 2 1 110 527 639 2.76e-19 83.6
Msa0619150 AT4G23250.2 38.710 124 67 4 1 116 523 645 2.95e-19 83.6
Msa0619150 AT4G04490.1 40.708 113 57 3 1 108 509 616 1.15e-17 79.0
Msa0619150 AT4G04570.1 35.570 149 79 5 1 143 517 654 2.08e-17 78.2
Msa0619150 AT4G04540.1 39.831 118 60 4 1 112 522 634 6.26e-17 76.6
Msa0619150 AT4G04540.4 39.831 118 60 4 1 112 493 605 6.78e-17 76.6
Msa0619150 AT4G04510.2 34.459 148 85 4 1 143 510 650 8.92e-16 73.2
Msa0619150 AT4G04510.1 34.459 148 85 4 1 143 508 648 9.09e-16 73.2
Msa0619150 AT1G70740.1 35.577 104 62 1 1 99 230 333 6.81e-15 70.9
Msa0619150 AT4G28670.1 34.711 121 73 2 1 115 503 623 1.72e-14 69.7
Msa0619150 AT1G70530.1 33.898 118 71 2 1 113 491 606 1.89e-14 69.7
Msa0619150 AT3G14840.2 38.835 103 58 1 1 98 841 943 4.98e-14 68.6
Msa0619150 AT4G04500.1 37.931 116 63 3 1 107 514 629 2.39e-13 66.2
Msa0619150 AT1G16670.1 31.250 128 80 3 1 121 212 338 8.36e-13 64.7
Msa0619150 AT1G56145.3 32.773 119 73 3 1 113 751 868 1.07e-12 64.7
Msa0619150 AT1G70740.2 31.897 116 62 2 1 99 218 333 1.09e-12 64.3
Msa0619150 AT1G56145.1 32.773 119 73 3 1 113 854 971 1.22e-12 64.3
Msa0619150 AT1G56145.2 32.773 119 73 3 1 113 881 998 1.71e-12 63.9
Msa0619150 AT1G53440.1 33.036 112 70 1 1 107 836 947 3.84e-12 63.2
Msa0619150 AT1G53430.2 33.036 112 70 1 1 107 797 908 4.43e-12 62.8
Msa0619150 AT5G40380.1 38.571 140 67 8 1 125 483 618 4.78e-12 62.8
Msa0619150 AT1G53430.1 33.036 112 70 1 1 107 838 949 4.80e-12 62.8
Msa0619150 AT1G29720.1 34.951 103 62 1 1 98 840 942 4.88e-12 62.8
Msa0619150 AT1G56120.3 31.933 119 74 3 1 113 711 828 9.37e-12 62.0
Msa0619150 AT1G56120.2 31.298 131 83 3 1 125 859 988 1.30e-11 61.6
Msa0619150 AT1G56120.1 31.298 131 83 3 1 125 877 1006 1.37e-11 61.2
Msa0619150 AT1G53420.1 34.951 103 62 1 1 98 793 895 6.19e-11 59.7
Msa0619150 AT3G55550.1 31.618 136 84 3 1 128 515 649 6.19e-11 59.3

Find 45 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCCCAAAATCTGAGATTT+TGG 0.086616 4_2:-70219088 None:intergenic
AATCCCAAAATCTCAGATTT+TGG 0.095099 4_2:+70219084 Msa0619150:five_prime_UTR
ATACATGTCCAATTAAATTT+AGG 0.143575 4_2:-70219376 None:intergenic
TTTGGGATGGCAAGAATATT+TGG 0.209085 4_2:+70219102 Msa0619150:five_prime_UTR
AGAGACTCCCTAAATTTAAT+TGG 0.223618 4_2:+70219368 Msa0619150:CDS
CGTCCTTCCATTGCATATTC+TGG 0.245891 4_2:-70219272 None:intergenic
TACATGTCCAATTAAATTTA+GGG 0.297320 4_2:-70219375 None:intergenic
GTTCTGAGATGCATTCAAAT+TGG 0.299739 4_2:+70219575 Msa0619150:CDS
ATTTATAGGTGTGGACTATA+TGG 0.371461 4_2:+70219489 Msa0619150:intron
TAATAAGCTTATAATTGAAA+TGG 0.374479 4_2:-70219942 None:intergenic
AGCATCAAGGAGAACATTGC+TGG 0.376298 4_2:-70219055 None:intergenic
TATATCTTCATCAAGATTCA+AGG 0.386838 4_2:+70219004 Msa0619150:five_prime_UTR
AAAACCACTTCTAACATTGA+TGG 0.407371 4_2:-70219632 None:intergenic
CAAAAGGTCATCACTGGATT+GGG 0.418371 4_2:+70218939 Msa0619150:five_prime_UTR
ACAAAAGGTCATCACTGGAT+TGG 0.425011 4_2:+70218938 Msa0619150:five_prime_UTR
TTACCACTGGAGATTATTGA+TGG 0.428533 4_2:+70219317 Msa0619150:CDS
TGGGATTCATTTCAGCATCA+AGG 0.471101 4_2:-70219068 None:intergenic
TTGCAAGAGTCGTCAACGTC+AGG 0.483659 4_2:+70219725 Msa0619150:CDS
ATGGACAGAAGAAAGGGCCT+TGG 0.483933 4_2:+70219508 Msa0619150:CDS
TGGGCAAAGAGGCGTGTCAT+TGG 0.487195 4_2:-70219663 None:intergenic
AGAAACACACATTGTGAGAC+AGG 0.490796 4_2:+70219344 Msa0619150:CDS
GGACTATATGGACAGAAGAA+AGG 0.497215 4_2:+70219501 Msa0619150:CDS
GACTATATGGACAGAAGAAA+GGG 0.498234 4_2:+70219502 Msa0619150:CDS
TTAACATAGTTCTTTAGAAG+TGG 0.499641 4_2:+70219991 Msa0619150:three_prime_UTR
ATGCATCTCAGAACTATAGC+AGG 0.508510 4_2:-70219566 None:intergenic
TCAAAACAAAAGGTCATCAC+TGG 0.509351 4_2:+70218933 Msa0619150:five_prime_UTR
CTTGTTTCTCAAGAACCTCT+AGG 0.517875 4_2:-70219869 None:intergenic
TCAACTAAGATCAAAACAAA+AGG 0.524958 4_2:+70218923 Msa0619150:five_prime_UTR
TAGACCATCAATGTTAGAAG+TGG 0.547573 4_2:+70219628 Msa0619150:CDS
GAGTCGTCAACGTCAGGAGG+AGG 0.554720 4_2:+70219731 Msa0619150:CDS
AAAATCTGATGTCTTACCAC+TGG 0.555595 4_2:+70219304 Msa0619150:CDS
TGCTTCATCAACTATATCCA+AGG 0.578658 4_2:-70219525 None:intergenic
TGCATCTCAGAACTATAGCA+GGG 0.601676 4_2:-70219565 None:intergenic
AAGCAAGAACAAAGAGTGGT+CGG 0.604905 4_2:+70219139 Msa0619150:five_prime_UTR
TCACCAGAATATGCAATGGA+AGG 0.620061 4_2:+70219269 Msa0619150:CDS
CAAGAGTCGTCAACGTCAGG+AGG 0.620124 4_2:+70219728 Msa0619150:CDS
TATGTCACCAGAATATGCAA+TGG 0.632728 4_2:+70219265 Msa0619150:exon
TTGCCATCAATAATCTCCAG+TGG 0.651511 4_2:-70219320 None:intergenic
AAGTATCTGTTGTCACTCTG+TGG 0.653840 4_2:+70219889 Msa0619150:three_prime_UTR
ATTCAAGCAAGAACAAAGAG+TGG 0.660801 4_2:+70219135 Msa0619150:five_prime_UTR
GCATCTCAGAACTATAGCAG+GGG 0.679974 4_2:-70219564 None:intergenic
GAGTTTGTAGACATTCCTAG+AGG 0.684001 4_2:+70219854 Msa0619150:three_prime_UTR
CATCTCAGAACTATAGCAGG+GGG 0.685391 4_2:-70219563 None:intergenic
ATCCGTTGTGGGATTGATCG+AGG 0.687210 4_2:+70218976 Msa0619150:five_prime_UTR
CACCTCGATCAATCCCACAA+CGG 0.700093 4_2:-70218978 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTACATATTTGATTA+CGG - chr4_2:70219809-70219828 None:intergenic 10.0%
!!! AATTTTTACATATTTGATTA+CGG - chr4_2:70219809-70219828 None:intergenic 10.0%
!!! TTTTGTTCATATTTTTACAT+TGG + chr4_2:70219827-70219846 Msa0619150:three_prime_UTR 15.0%
!! TAATAAGCTTATAATTGAAA+TGG - chr4_2:70219945-70219964 None:intergenic 15.0%
!!! TTTTGTTCATATTTTTACAT+TGG + chr4_2:70219827-70219846 Msa0619150:three_prime_UTR 15.0%
!! TAATAAGCTTATAATTGAAA+TGG - chr4_2:70219945-70219964 None:intergenic 15.0%
!! TACATGTCCAATTAAATTTA+GGG - chr4_2:70219378-70219397 None:intergenic 20.0%
!! ATACATGTCCAATTAAATTT+AGG - chr4_2:70219379-70219398 None:intergenic 20.0%
!! GTTATATATCATTAGATTGT+AGG - chr4_2:70219437-70219456 None:intergenic 20.0%
!! TACATGTCCAATTAAATTTA+GGG - chr4_2:70219378-70219397 None:intergenic 20.0%
!! ATACATGTCCAATTAAATTT+AGG - chr4_2:70219379-70219398 None:intergenic 20.0%
!! GTTATATATCATTAGATTGT+AGG - chr4_2:70219437-70219456 None:intergenic 20.0%
! TCAACTAAGATCAAAACAAA+AGG + chr4_2:70218923-70218942 Msa0619150:five_prime_UTR 25.0%
! TATATCTTCATCAAGATTCA+AGG + chr4_2:70219004-70219023 Msa0619150:five_prime_UTR 25.0%
! TAATCACGAAATTATACAGA+TGG + chr4_2:70219192-70219211 Msa0619150:intron 25.0%
! AAACTCTGTTGTGAATTTAT+AGG + chr4_2:70219475-70219494 Msa0619150:intron 25.0%
!!! AATAAAAATGCTGGTTTTTG+AGG - chr4_2:70219689-70219708 None:intergenic 25.0%
!! TTTTACATATTTGATTACGG+TGG - chr4_2:70219806-70219825 None:intergenic 25.0%
!! TTAACATAGTTCTTTAGAAG+TGG + chr4_2:70219991-70220010 Msa0619150:three_prime_UTR 25.0%
! TCAACTAAGATCAAAACAAA+AGG + chr4_2:70218923-70218942 Msa0619150:five_prime_UTR 25.0%
! TATATCTTCATCAAGATTCA+AGG + chr4_2:70219004-70219023 Msa0619150:five_prime_UTR 25.0%
! TAATCACGAAATTATACAGA+TGG + chr4_2:70219192-70219211 Msa0619150:intron 25.0%
! AAACTCTGTTGTGAATTTAT+AGG + chr4_2:70219475-70219494 Msa0619150:intron 25.0%
!!! AATAAAAATGCTGGTTTTTG+AGG - chr4_2:70219689-70219708 None:intergenic 25.0%
!! TTTTACATATTTGATTACGG+TGG - chr4_2:70219806-70219825 None:intergenic 25.0%
!! TTAACATAGTTCTTTAGAAG+TGG + chr4_2:70219991-70220010 Msa0619150:three_prime_UTR 25.0%
! AATCCCAAAATCTCAGATTT+TGG + chr4_2:70219084-70219103 Msa0619150:five_prime_UTR 30.0%
! ATCCCAAAATCTCAGATTTT+GGG + chr4_2:70219085-70219104 Msa0619150:five_prime_UTR 30.0%
!! ATCCCAAAATCTGAGATTTT+GGG - chr4_2:70219090-70219109 None:intergenic 30.0%
! ACCATTTTGTATAATTGCAG+TGG + chr4_2:70219239-70219258 Msa0619150:intron 30.0%
TCCACTGCAATTATACAAAA+TGG - chr4_2:70219243-70219262 None:intergenic 30.0%
AGAGACTCCCTAAATTTAAT+TGG + chr4_2:70219368-70219387 Msa0619150:CDS 30.0%
! AAAAAGAGTAGCCTTAAAAC+AGG + chr4_2:70219411-70219430 Msa0619150:intron 30.0%
! ATTTATAGGTGTGGACTATA+TGG + chr4_2:70219489-70219508 Msa0619150:intron 30.0%
AAAACCACTTCTAACATTGA+TGG - chr4_2:70219635-70219654 None:intergenic 30.0%
TTGTCGTTGAATAAAAATGC+TGG - chr4_2:70219698-70219717 None:intergenic 30.0%
! AATCCCAAAATCTCAGATTT+TGG + chr4_2:70219084-70219103 Msa0619150:five_prime_UTR 30.0%
! ATCCCAAAATCTCAGATTTT+GGG + chr4_2:70219085-70219104 Msa0619150:five_prime_UTR 30.0%
!! ATCCCAAAATCTGAGATTTT+GGG - chr4_2:70219090-70219109 None:intergenic 30.0%
! ACCATTTTGTATAATTGCAG+TGG + chr4_2:70219239-70219258 Msa0619150:intron 30.0%
TCCACTGCAATTATACAAAA+TGG - chr4_2:70219243-70219262 None:intergenic 30.0%
AGAGACTCCCTAAATTTAAT+TGG + chr4_2:70219368-70219387 Msa0619150:CDS 30.0%
! AAAAAGAGTAGCCTTAAAAC+AGG + chr4_2:70219411-70219430 Msa0619150:intron 30.0%
! ATTTATAGGTGTGGACTATA+TGG + chr4_2:70219489-70219508 Msa0619150:intron 30.0%
AAAACCACTTCTAACATTGA+TGG - chr4_2:70219635-70219654 None:intergenic 30.0%
TTGTCGTTGAATAAAAATGC+TGG - chr4_2:70219698-70219717 None:intergenic 30.0%
TCAAAACAAAAGGTCATCAC+TGG + chr4_2:70218933-70218952 Msa0619150:five_prime_UTR 35.0%
!! CATCCCAAAATCTGAGATTT+TGG - chr4_2:70219091-70219110 None:intergenic 35.0%
!! CAAAATCTCAGATTTTGGGA+TGG + chr4_2:70219089-70219108 Msa0619150:five_prime_UTR 35.0%
! TTTGGGATGGCAAGAATATT+TGG + chr4_2:70219102-70219121 Msa0619150:five_prime_UTR 35.0%
ATTCAAGCAAGAACAAAGAG+TGG + chr4_2:70219135-70219154 Msa0619150:five_prime_UTR 35.0%
TATGTCACCAGAATATGCAA+TGG + chr4_2:70219265-70219284 Msa0619150:exon 35.0%
AAAATCTGATGTCTTACCAC+TGG + chr4_2:70219304-70219323 Msa0619150:CDS 35.0%
TTACCACTGGAGATTATTGA+TGG + chr4_2:70219317-70219336 Msa0619150:CDS 35.0%
! TAGATTGTAGGCCTGTTTTA+AGG - chr4_2:70219425-70219444 None:intergenic 35.0%
CTGTTGTGAATTTATAGGTG+TGG + chr4_2:70219480-70219499 Msa0619150:intron 35.0%
GACTATATGGACAGAAGAAA+GGG + chr4_2:70219502-70219521 Msa0619150:CDS 35.0%
TGCTTCATCAACTATATCCA+AGG - chr4_2:70219528-70219547 None:intergenic 35.0%
!! GTTCTGAGATGCATTCAAAT+TGG + chr4_2:70219575-70219594 Msa0619150:CDS 35.0%
TAGACCATCAATGTTAGAAG+TGG + chr4_2:70219628-70219647 Msa0619150:CDS 35.0%
!!! AAAATGCTGGTTTTTGAGGT+GGG - chr4_2:70219685-70219704 None:intergenic 35.0%
!!! AAAAATGCTGGTTTTTGAGG+TGG - chr4_2:70219686-70219705 None:intergenic 35.0%
TCAAAACAAAAGGTCATCAC+TGG + chr4_2:70218933-70218952 Msa0619150:five_prime_UTR 35.0%
!! CATCCCAAAATCTGAGATTT+TGG - chr4_2:70219091-70219110 None:intergenic 35.0%
!! CAAAATCTCAGATTTTGGGA+TGG + chr4_2:70219089-70219108 Msa0619150:five_prime_UTR 35.0%
! TTTGGGATGGCAAGAATATT+TGG + chr4_2:70219102-70219121 Msa0619150:five_prime_UTR 35.0%
ATTCAAGCAAGAACAAAGAG+TGG + chr4_2:70219135-70219154 Msa0619150:five_prime_UTR 35.0%
TATGTCACCAGAATATGCAA+TGG + chr4_2:70219265-70219284 Msa0619150:exon 35.0%
AAAATCTGATGTCTTACCAC+TGG + chr4_2:70219304-70219323 Msa0619150:CDS 35.0%
TTACCACTGGAGATTATTGA+TGG + chr4_2:70219317-70219336 Msa0619150:CDS 35.0%
! TAGATTGTAGGCCTGTTTTA+AGG - chr4_2:70219425-70219444 None:intergenic 35.0%
CTGTTGTGAATTTATAGGTG+TGG + chr4_2:70219480-70219499 Msa0619150:intron 35.0%
GACTATATGGACAGAAGAAA+GGG + chr4_2:70219502-70219521 Msa0619150:CDS 35.0%
TGCTTCATCAACTATATCCA+AGG - chr4_2:70219528-70219547 None:intergenic 35.0%
!! GTTCTGAGATGCATTCAAAT+TGG + chr4_2:70219575-70219594 Msa0619150:CDS 35.0%
TAGACCATCAATGTTAGAAG+TGG + chr4_2:70219628-70219647 Msa0619150:CDS 35.0%
!!! AAAATGCTGGTTTTTGAGGT+GGG - chr4_2:70219685-70219704 None:intergenic 35.0%
!!! AAAAATGCTGGTTTTTGAGG+TGG - chr4_2:70219686-70219705 None:intergenic 35.0%
ACAAAAGGTCATCACTGGAT+TGG + chr4_2:70218938-70218957 Msa0619150:five_prime_UTR 40.0%
CAAAAGGTCATCACTGGATT+GGG + chr4_2:70218939-70218958 Msa0619150:five_prime_UTR 40.0%
!!! AAGCGTTTTGAAATCCGTTG+TGG + chr4_2:70218964-70218983 Msa0619150:five_prime_UTR 40.0%
!!! AGCGTTTTGAAATCCGTTGT+GGG + chr4_2:70218965-70218984 Msa0619150:five_prime_UTR 40.0%
TGGGATTCATTTCAGCATCA+AGG - chr4_2:70219071-70219090 None:intergenic 40.0%
AAGCAAGAACAAAGAGTGGT+CGG + chr4_2:70219139-70219158 Msa0619150:five_prime_UTR 40.0%
TCACCAGAATATGCAATGGA+AGG + chr4_2:70219269-70219288 Msa0619150:CDS 40.0%
TTGCCATCAATAATCTCCAG+TGG - chr4_2:70219323-70219342 None:intergenic 40.0%
AGAAACACACATTGTGAGAC+AGG + chr4_2:70219344-70219363 Msa0619150:CDS 40.0%
GGACTATATGGACAGAAGAA+AGG + chr4_2:70219501-70219520 Msa0619150:CDS 40.0%
TGCATCTCAGAACTATAGCA+GGG - chr4_2:70219568-70219587 None:intergenic 40.0%
ATGCATCTCAGAACTATAGC+AGG - chr4_2:70219569-70219588 None:intergenic 40.0%
GAGTTTGTAGACATTCCTAG+AGG + chr4_2:70219854-70219873 Msa0619150:three_prime_UTR 40.0%
! CTTGTTTCTCAAGAACCTCT+AGG - chr4_2:70219872-70219891 None:intergenic 40.0%
AAGTATCTGTTGTCACTCTG+TGG + chr4_2:70219889-70219908 Msa0619150:three_prime_UTR 40.0%
ACAAAAGGTCATCACTGGAT+TGG + chr4_2:70218938-70218957 Msa0619150:five_prime_UTR 40.0%
CAAAAGGTCATCACTGGATT+GGG + chr4_2:70218939-70218958 Msa0619150:five_prime_UTR 40.0%
!!! AAGCGTTTTGAAATCCGTTG+TGG + chr4_2:70218964-70218983 Msa0619150:five_prime_UTR 40.0%
!!! AGCGTTTTGAAATCCGTTGT+GGG + chr4_2:70218965-70218984 Msa0619150:five_prime_UTR 40.0%
TGGGATTCATTTCAGCATCA+AGG - chr4_2:70219071-70219090 None:intergenic 40.0%
AAGCAAGAACAAAGAGTGGT+CGG + chr4_2:70219139-70219158 Msa0619150:five_prime_UTR 40.0%
TCACCAGAATATGCAATGGA+AGG + chr4_2:70219269-70219288 Msa0619150:CDS 40.0%
TTGCCATCAATAATCTCCAG+TGG - chr4_2:70219323-70219342 None:intergenic 40.0%
AGAAACACACATTGTGAGAC+AGG + chr4_2:70219344-70219363 Msa0619150:CDS 40.0%
GGACTATATGGACAGAAGAA+AGG + chr4_2:70219501-70219520 Msa0619150:CDS 40.0%
TGCATCTCAGAACTATAGCA+GGG - chr4_2:70219568-70219587 None:intergenic 40.0%
ATGCATCTCAGAACTATAGC+AGG - chr4_2:70219569-70219588 None:intergenic 40.0%
GAGTTTGTAGACATTCCTAG+AGG + chr4_2:70219854-70219873 Msa0619150:three_prime_UTR 40.0%
! CTTGTTTCTCAAGAACCTCT+AGG - chr4_2:70219872-70219891 None:intergenic 40.0%
AAGTATCTGTTGTCACTCTG+TGG + chr4_2:70219889-70219908 Msa0619150:three_prime_UTR 40.0%
AGCATCAAGGAGAACATTGC+TGG - chr4_2:70219058-70219077 None:intergenic 45.0%
CGTCCTTCCATTGCATATTC+TGG - chr4_2:70219275-70219294 None:intergenic 45.0%
CATCTCAGAACTATAGCAGG+GGG - chr4_2:70219566-70219585 None:intergenic 45.0%
GCATCTCAGAACTATAGCAG+GGG - chr4_2:70219567-70219586 None:intergenic 45.0%
AGCATCAAGGAGAACATTGC+TGG - chr4_2:70219058-70219077 None:intergenic 45.0%
CGTCCTTCCATTGCATATTC+TGG - chr4_2:70219275-70219294 None:intergenic 45.0%
CATCTCAGAACTATAGCAGG+GGG - chr4_2:70219566-70219585 None:intergenic 45.0%
GCATCTCAGAACTATAGCAG+GGG - chr4_2:70219567-70219586 None:intergenic 45.0%
ATCCGTTGTGGGATTGATCG+AGG + chr4_2:70218976-70218995 Msa0619150:five_prime_UTR 50.0%
CACCTCGATCAATCCCACAA+CGG - chr4_2:70218981-70219000 None:intergenic 50.0%
ATGGACAGAAGAAAGGGCCT+TGG + chr4_2:70219508-70219527 Msa0619150:CDS 50.0%
CTATAGCAGGGGGATAAGAC+TGG - chr4_2:70219556-70219575 None:intergenic 50.0%
!!! GGTTTTTGAGGTGGGCAAAG+AGG - chr4_2:70219677-70219696 None:intergenic 50.0%
TTGCAAGAGTCGTCAACGTC+AGG + chr4_2:70219725-70219744 Msa0619150:CDS 50.0%
!!! TGGCTTTTAGCGAGCACTGA+TGG - chr4_2:70219786-70219805 None:intergenic 50.0%
ATCCGTTGTGGGATTGATCG+AGG + chr4_2:70218976-70218995 Msa0619150:five_prime_UTR 50.0%
CACCTCGATCAATCCCACAA+CGG - chr4_2:70218981-70219000 None:intergenic 50.0%
ATGGACAGAAGAAAGGGCCT+TGG + chr4_2:70219508-70219527 Msa0619150:CDS 50.0%
CTATAGCAGGGGGATAAGAC+TGG - chr4_2:70219556-70219575 None:intergenic 50.0%
!!! GGTTTTTGAGGTGGGCAAAG+AGG - chr4_2:70219677-70219696 None:intergenic 50.0%
TTGCAAGAGTCGTCAACGTC+AGG + chr4_2:70219725-70219744 Msa0619150:CDS 50.0%
!!! TGGCTTTTAGCGAGCACTGA+TGG - chr4_2:70219786-70219805 None:intergenic 50.0%
! TGGGCAAAGAGGCGTGTCAT+TGG - chr4_2:70219666-70219685 None:intergenic 55.0%
CAAGAGTCGTCAACGTCAGG+AGG + chr4_2:70219728-70219747 Msa0619150:CDS 55.0%
! TGGGCAAAGAGGCGTGTCAT+TGG - chr4_2:70219666-70219685 None:intergenic 55.0%
CAAGAGTCGTCAACGTCAGG+AGG + chr4_2:70219728-70219747 Msa0619150:CDS 55.0%
GAGTCGTCAACGTCAGGAGG+AGG + chr4_2:70219731-70219750 Msa0619150:CDS 60.0%
GAGTCGTCAACGTCAGGAGG+AGG + chr4_2:70219731-70219750 Msa0619150:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 70218881 70220060 70218881 ID=Msa0619150;Name=Msa0619150
chr4_2 mRNA 70218881 70220060 70218881 ID=Msa0619150-mRNA-1;Parent=Msa0619150;Name=Msa0619150-mRNA-1;_AED=0.05;_eAED=0.05;_QI=306|1|1|1|0.5|0.66|3|261|143
chr4_2 exon 70218881 70219179 70218881 ID=Msa0619150-mRNA-1:exon:20416;Parent=Msa0619150-mRNA-1
chr4_2 exon 70219259 70219394 70219259 ID=Msa0619150-mRNA-1:exon:20417;Parent=Msa0619150-mRNA-1
chr4_2 exon 70219497 70220060 70219497 ID=Msa0619150-mRNA-1:exon:20418;Parent=Msa0619150-mRNA-1
chr4_2 five_prime_UTR 70218881 70219179 70218881 ID=Msa0619150-mRNA-1:five_prime_utr;Parent=Msa0619150-mRNA-1
chr4_2 five_prime_UTR 70219259 70219265 70219259 ID=Msa0619150-mRNA-1:five_prime_utr;Parent=Msa0619150-mRNA-1
chr4_2 CDS 70219266 70219394 70219266 ID=Msa0619150-mRNA-1:cds;Parent=Msa0619150-mRNA-1
chr4_2 CDS 70219497 70219799 70219497 ID=Msa0619150-mRNA-1:cds;Parent=Msa0619150-mRNA-1
chr4_2 three_prime_UTR 70219800 70220060 70219800 ID=Msa0619150-mRNA-1:three_prime_utr;Parent=Msa0619150-mRNA-1
Gene Sequence

>Msa0619150

ATGTCACCAGAATATGCAATGGAAGGACGATATTCAACAAAATCTGATGTCTTACCACTGGAGATTATTGATGGCAAGAGAAACACACATTGTGAGACAGGAAGAGACTCCCTAAATTTAATTGGACATGTGTGGACTATATGGACAGAAGAAAGGGCCTTGGATATAGTTGATGAAGCACTAAACCAGTCTTATCCCCCTGCTATAGTTCTGAGATGCATTCAAATTGGACTCTTGTGTGTGCAAGAAAATGCGATGAATAGACCATCAATGTTAGAAGTGGTTTTTATGCTAGCCAATGACACGCCTCTTTGCCCACCTCAAAAACCAGCATTTTTATTCAACGACAACAAAGATTTGCAAGAGTCGTCAACGTCAGGAGGAGGATCTTCAATAAATGAATTAACAGAAACTACCATCAGTGCTCGCTAA
Protein sequence

>Msa0619150

MSPEYAMEGRYSTKSDVLPLEIIDGKRNTHCETGRDSLNLIGHVWTIWTEERALDIVDEALNQSYPPAIVLRCIQIGLLCVQENAMNRPSMLEVVFMLANDTPLCPPQKPAFLFNDNKDLQESSTSGGGSSINELTETTISAR*