AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0619160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0619160 MtrunA17_Chr8g0383021 94.276 297 6 1 1 297 1 286 0.0 568
Msa0619160 MtrunA17_Chr6g0462401 28.571 245 159 3 40 284 49 277 1.22e-30 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0619160 AT2G21940.4 58.303 271 98 4 22 292 40 295 3.73e-108 317
Msa0619160 AT2G21940.2 58.303 271 97 4 22 292 40 294 1.75e-107 315
Msa0619160 AT2G21940.5 58.303 271 97 4 22 292 40 294 1.75e-107 315
Msa0619160 AT2G21940.1 58.303 271 97 4 22 292 40 294 1.75e-107 315
Msa0619160 AT4G39540.2 53.901 282 115 4 16 293 23 293 1.03e-102 302
Msa0619160 AT4G39540.1 53.901 282 115 4 16 293 23 293 1.03e-102 302
Msa0619160 AT4G39540.3 52.069 290 116 5 16 293 23 301 4.33e-99 293
Msa0619160 AT2G21940.7 57.082 233 84 4 22 254 40 256 5.52e-89 266
Msa0619160 AT2G21940.3 57.082 233 84 4 22 254 40 256 5.52e-89 266
Msa0619160 AT2G21940.6 57.082 233 84 4 22 254 40 256 5.52e-89 266
Msa0619160 AT3G26900.3 34.112 214 112 5 75 284 75 263 3.03e-27 107
Msa0619160 AT3G26900.1 34.112 214 112 5 75 284 75 263 3.03e-27 107
Msa0619160 AT3G26900.2 34.112 214 112 5 75 284 75 263 3.03e-27 107

Find 104 sgRNAs with CRISPR-Local

Find 387 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTCTATCTTCTTCTATTT+TGG 0.032803 4_2:+70238311 Msa0619160:three_prime_UTR
GGTCTCCCATGGGTCTTAAT+TGG 0.224798 4_2:+70238333 Msa0619160:three_prime_UTR
TAGCAACAGTTTGAATTTCT+AGG 0.232709 4_2:+70238112 Msa0619160:three_prime_UTR
ACCGCCCTGTCCAACTTTAC+AGG 0.274283 4_2:+70235600 Msa0619160:CDS
TACAACATACAATCTCTTAC+AGG 0.309721 4_2:-70238282 None:intergenic
GAAATTCAAACTGTTGCTAT+TGG 0.319091 4_2:-70238108 None:intergenic
TGCAGATATAGCAACAAAAC+TGG 0.355991 4_2:+70237660 Msa0619160:intron
GCTGATATATTCAAGCTCTA+TGG 0.360240 4_2:+70234780 Msa0619160:CDS
TGTTCTTATAACAATATTCC+AGG 0.365109 4_2:+70232641 Msa0619160:CDS
CTGTTGTGCGGCCTATTAAT+TGG 0.372746 4_2:+70236654 Msa0619160:CDS
AAACCGTTGTATTTAACTTC+AGG 0.380243 4_2:+70238483 Msa0619160:three_prime_UTR
GAGTGGAAGCAAAATCTAAT+TGG 0.380675 4_2:-70232266 None:intergenic
CACTAAGTGGGGTCGTCAAC+CGG 0.387217 4_2:-70238171 None:intergenic
ACTAATGTGTGTTCCGTAGA+TGG 0.391543 4_2:-70238397 None:intergenic
TTGATTGAGGAAGAGGTTGA+TGG 0.403718 4_2:+70234747 Msa0619160:CDS
GTAGCTTCAACATTGGAATC+TGG 0.413868 4_2:+70233704 Msa0619160:intron
AAATGACAAGTTTATGCATC+AGG 0.414811 4_2:-70236616 None:intergenic
TGCAAGATAGTAGTGTGATT+TGG 0.417807 4_2:+70237919 Msa0619160:exon
TTGCAGGCGCTAGAGCAAAT+TGG 0.422109 4_2:+70237866 Msa0619160:intron
TGTATATACTATATATATTC+CGG 0.424719 4_2:+70238152 Msa0619160:three_prime_UTR
CATAAACTTGTCATTTCTAC+AGG 0.428732 4_2:+70236623 Msa0619160:CDS
AAATTGACATGCAGGAATGA+TGG 0.432438 4_2:+70234077 Msa0619160:intron
GAGAATTGTGTGAGAATAAC+CGG 0.432966 4_2:+70232542 Msa0619160:CDS
GGTTATTCTCACACAATTCT+CGG 0.435105 4_2:-70232540 None:intergenic
TGATACATTGATTGAGGAAG+AGG 0.440199 4_2:+70234740 Msa0619160:CDS
ACCTCAATTGCAATTTCAGT+TGG 0.443438 4_2:-70237709 None:intergenic
TACTCTTGTAGCTTCAACAT+TGG 0.455200 4_2:+70233697 Msa0619160:intron
GGCTCTGGGAAGACAACTGT+GGG 0.455572 4_2:+70234099 Msa0619160:CDS
TTCTCGGGTCGGGTAAGAAC+CGG 0.470591 4_2:-70232524 None:intergenic
TGTTCAAATGTTGCATCTAC+CGG 0.470846 4_2:+70232505 Msa0619160:CDS
CATGCAGGAATGATGGGCTC+TGG 0.472739 4_2:+70234084 Msa0619160:intron
CCAAACCTGTAAAGTTGGAC+AGG 0.475343 4_2:-70235605 None:intergenic
TCCAACTGAAATTGCAATTG+AGG 0.477103 4_2:+70237708 Msa0619160:CDS
CAGATTCTGCCGTATTTAAG+TGG 0.478853 4_2:+70233955 Msa0619160:CDS
TCTCACACAATTCTCGGGTC+GGG 0.489860 4_2:-70232534 None:intergenic
TGTTGCCAAACCTGTAAAGT+TGG 0.492052 4_2:-70235610 None:intergenic
CGACCCCACTTAGTGGGATA+AGG 0.503384 4_2:+70238179 Msa0619160:three_prime_UTR
GTTTCCCCTTGAGGAAGAGT+TGG 0.510532 4_2:+70233736 Msa0619160:CDS
AATCTAATTGGAATGGATGA+AGG 0.514196 4_2:-70232254 None:intergenic
TTCTAATGAGACTCTAGCAT+TGG 0.514662 4_2:-70237287 None:intergenic
TTATAGTGATACATTGATTG+AGG 0.517101 4_2:+70234734 Msa0619160:intron
TTCTCACACAATTCTCGGGT+CGG 0.518453 4_2:-70232535 None:intergenic
CGGTTGACGACCCCACTTAG+TGG 0.520350 4_2:+70238172 Msa0619160:three_prime_UTR
AATTGACATGCAGGAATGAT+GGG 0.520917 4_2:+70234078 Msa0619160:intron
TGTATTGCCGCTGTATGTAA+TGG 0.523809 4_2:+70232472 Msa0619160:exon
GAAGCAAAATCTAATTGGAA+TGG 0.532321 4_2:-70232261 None:intergenic
CTGTTGGCCAATGCTTCCAC+TGG 0.535850 4_2:-70236823 None:intergenic
GGTCCGACTCAAAGAACAAC+CGG 0.536701 4_2:-70232561 None:intergenic
AGATGTACCAGTGGAAGCAT+TGG 0.540460 4_2:+70236816 Msa0619160:CDS
CTTGTCATTTCTACAGGTGG+AGG 0.541169 4_2:+70236629 Msa0619160:CDS
GTTATTCTCACACAATTCTC+GGG 0.542551 4_2:-70232539 None:intergenic
AGAATCTTTCTTTCGCGAGA+AGG 0.544258 4_2:+70234803 Msa0619160:CDS
TAACCGGTTGTTCTTTGAGT+CGG 0.545142 4_2:+70232558 Msa0619160:CDS
TGAGGAAGAGTTGGTTCTGA+AGG 0.546791 4_2:+70233745 Msa0619160:CDS
GGGCGCTGTATATATGTTGT+TGG 0.552480 4_2:+70233976 Msa0619160:CDS
TTCAGCCTTATCCCACTAAG+TGG 0.557471 4_2:-70238184 None:intergenic
CCTCTTCTACACGATGAAGC+AGG 0.557589 4_2:+70236874 Msa0619160:CDS
GGTTGTTCTTTGAGTCGGAC+CGG 0.558486 4_2:+70232563 Msa0619160:CDS
TCCCACGGCTGCAATTCTGT+TGG 0.558533 4_2:-70236839 None:intergenic
TCAGCCTTATCCCACTAAGT+GGG 0.561700 4_2:-70238183 None:intergenic
ATTTCTCAAACAAATCTACC+AGG 0.562522 4_2:+70232304 Msa0619160:five_prime_UTR
TCGGTGCAAGAAGGTTTCTA+CGG 0.564921 4_2:+70232610 Msa0619160:CDS
ATCTTTCTTTCGCGAGAAGG+AGG 0.565809 4_2:+70234806 Msa0619160:CDS
ATACAGCGCCCACTTAAATA+CGG 0.566584 4_2:-70233964 None:intergenic
AAACTTGTCATTTCTACAGG+TGG 0.573379 4_2:+70236626 Msa0619160:CDS
GGTTGACGACCCCACTTAGT+GGG 0.576686 4_2:+70238173 Msa0619160:three_prime_UTR
AAGGCACCAATTAAGACCCA+TGG 0.576990 4_2:-70238339 None:intergenic
GGCCAACAGAATTGCAGCCG+TGG 0.577317 4_2:+70236837 Msa0619160:CDS
CTGCTTCATCGTGTAGAAGA+GGG 0.582100 4_2:-70236873 None:intergenic
TCAGAACCAACTCTTCCTCA+AGG 0.583804 4_2:-70233742 None:intergenic
CAGAACCAACTCTTCCTCAA+GGG 0.586131 4_2:-70233741 None:intergenic
ATGCAGGAATGATGGGCTCT+GGG 0.586330 4_2:+70234085 Msa0619160:intron
CCTGCTTCATCGTGTAGAAG+AGG 0.594223 4_2:-70236874 None:intergenic
GCAGATATAGCAACAAAACT+GGG 0.598728 4_2:+70237661 Msa0619160:intron
AGATTCTGCCGTATTTAAGT+GGG 0.599085 4_2:+70233956 Msa0619160:CDS
CCAGGAAATATATGCACAAG+GGG 0.600293 4_2:+70236779 Msa0619160:intron
AATGACAAGTTTATGCATCA+GGG 0.602843 4_2:-70236615 None:intergenic
CAAGCAAGACTGAAGCATGA+AGG 0.605421 4_2:-70238358 None:intergenic
AGGGCATAAGTTTCCCCTTG+AGG 0.610167 4_2:+70233727 Msa0619160:CDS
TGAGACTCTAGCATTGGCGT+TGG 0.610419 4_2:-70237281 None:intergenic
GCTTCAACATTGGAATCTGG+AGG 0.615047 4_2:+70233707 Msa0619160:intron
ATTCCTGAAGTTAAATACAA+CGG 0.616967 4_2:-70238486 None:intergenic
GGGCTCTGGGAAGACAACTG+TGG 0.617107 4_2:+70234098 Msa0619160:CDS
GCCAACAGAATTGCAGCCGT+GGG 0.617442 4_2:+70236838 Msa0619160:CDS
AGGGCGAGAATTAGTTCCCA+CGG 0.618683 4_2:-70236854 None:intergenic
AGAACCAACTCTTCCTCAAG+GGG 0.619441 4_2:-70233740 None:intergenic
TCAGACGATTCGGTGCAAGA+AGG 0.619552 4_2:+70232601 Msa0619160:CDS
TGCCAGGAAATATATGCACA+AGG 0.620476 4_2:+70236777 Msa0619160:intron
ACCTGTAAAGTTGGACAGGG+CGG 0.631627 4_2:-70235601 None:intergenic
CTATACGAAAGATCCATCTA+CGG 0.633250 4_2:+70238384 Msa0619160:three_prime_UTR
CAAACCTGTAAAGTTGGACA+GGG 0.635142 4_2:-70235604 None:intergenic
GCCAGGAAATATATGCACAA+GGG 0.635533 4_2:+70236778 Msa0619160:intron
AACAACACCGCACAACAGCA+TGG 0.638911 4_2:-70238003 None:intergenic
AGGCACCAATTAAGACCCAT+GGG 0.643574 4_2:-70238338 None:intergenic
TGTTTGGTTAGATGTACCAG+TGG 0.652145 4_2:+70236807 Msa0619160:CDS
CAGCCTTATCCCACTAAGTG+GGG 0.657129 4_2:-70238182 None:intergenic
CTTCAACATTGGAATCTGGA+GGG 0.659832 4_2:+70233708 Msa0619160:CDS
CAGGTGGAGGTGCTGTTGTG+CGG 0.664050 4_2:+70236642 Msa0619160:CDS
TTAGCATCCATTACATACAG+CGG 0.666263 4_2:-70232479 None:intergenic
CCCATGTCACAGATGGACAG+TGG 0.675754 4_2:+70235577 Msa0619160:intron
ATTAAGGCCATGCTGTTGTG+CGG 0.694550 4_2:+70237996 Msa0619160:intron
CAGGAAATATATGCACAAGG+GGG 0.768658 4_2:+70236780 Msa0619160:intron
AGCAGGAGATGCATACACTG+CGG 0.783701 4_2:+70236891 Msa0619160:CDS
GCTCTGGGAAGACAACTGTG+GGG 0.798287 4_2:+70234100 Msa0619160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATATTTTTTGATTCA+TGG + chr4_2:70234664-70234683 Msa0619160:intron 10.0%
!!! AAGAAAATATTTTGTTTATT+TGG - chr4_2:70235275-70235294 None:intergenic 10.0%
!!! TTATTTTTAATCTCTATAAT+TGG + chr4_2:70236061-70236080 Msa0619160:intron 10.0%
!!! TAATTTTTATACCAATTAAT+AGG - chr4_2:70236668-70236687 None:intergenic 10.0%
!! ATTATGGATAATTAATATAA+GGG - chr4_2:70237142-70237161 None:intergenic 10.0%
!! AATTATGGATAATTAATATA+AGG - chr4_2:70237143-70237162 None:intergenic 10.0%
!!! ATATTAATTATCCATAATTT+TGG + chr4_2:70237144-70237163 Msa0619160:intron 10.0%
!! AAAATTATGTATAAAAAATG+TGG - chr4_2:70238061-70238080 None:intergenic 10.0%
!!! TTTTTATACATAATTTTTGT+TGG + chr4_2:70238064-70238083 Msa0619160:three_prime_UTR 10.0%
!!! TTTTATACATAATTTTTGTT+GGG + chr4_2:70238065-70238084 Msa0619160:three_prime_UTR 10.0%
!! TGGTATATATATACTTAAAA+GGG - chr4_2:70233894-70233913 None:intergenic 15.0%
!! ATGGTATATATATACTTAAA+AGG - chr4_2:70233895-70233914 None:intergenic 15.0%
!!! AATTATGTAGCATTTTTTTT+TGG + chr4_2:70234340-70234359 Msa0619160:intron 15.0%
!! TACATTTAATATTTGATATG+AGG + chr4_2:70234427-70234446 Msa0619160:intron 15.0%
!! ATTCAAGTGATATTAAATTA+AGG + chr4_2:70234466-70234485 Msa0619160:intron 15.0%
!! TATTATGCAATAGATAAAAA+CGG + chr4_2:70234501-70234520 Msa0619160:intron 15.0%
!!! AAAGGTTTTAAGAAATAATT+AGG + chr4_2:70235820-70235839 Msa0619160:intron 15.0%
!! TAGTACAAAATTTATCAAAT+AGG + chr4_2:70235938-70235957 Msa0619160:intron 15.0%
!!! AAGTAAGTTTTTATGAAATT+CGG - chr4_2:70237075-70237094 None:intergenic 15.0%
!!! TCATAAAAACTTACTTTTAA+AGG + chr4_2:70237079-70237098 Msa0619160:intron 15.0%
!!! TTTTTTTTTTCTTCAATTTG+CGG + chr4_2:70237967-70237986 Msa0619160:intron 15.0%
!! TGTATATACTATATATATTC+CGG + chr4_2:70238152-70238171 Msa0619160:three_prime_UTR 15.0%
!!! TCGATTATTATTATTCCTTT+TGG + chr4_2:70232376-70232395 Msa0619160:intron 20.0%
!!! ATTATTATTCCTTTTGGTTT+CGG + chr4_2:70232382-70232401 Msa0619160:intron 20.0%
!! AAATAACATTCAACAGAATT+TGG - chr4_2:70232906-70232925 None:intergenic 20.0%
!! TTATTTAATATGCTCATACT+TGG + chr4_2:70233609-70233628 Msa0619160:intron 20.0%
!! AATATCAGAAACAAAATGTA+AGG - chr4_2:70233678-70233697 None:intergenic 20.0%
!! ATTATGCAATAGATAAAAAC+GGG + chr4_2:70234502-70234521 Msa0619160:intron 20.0%
!! TATATAGAAGCAGAAAATAA+GGG - chr4_2:70234939-70234958 None:intergenic 20.0%
!! ATATATAGAAGCAGAAAATA+AGG - chr4_2:70234940-70234959 None:intergenic 20.0%
!! CGATTATATCAAATTAATAC+CGG - chr4_2:70235017-70235036 None:intergenic 20.0%
!! ATTGATTGATTGTACATATA+TGG + chr4_2:70235474-70235493 Msa0619160:intron 20.0%
!! TGTTTATTTCAAACAAAGTT+GGG - chr4_2:70235758-70235777 None:intergenic 20.0%
!! ATGTTTATTTCAAACAAAGT+TGG - chr4_2:70235759-70235778 None:intergenic 20.0%
!!! TTTTTACTAAAGTGGTTTTA+AGG + chr4_2:70236121-70236140 Msa0619160:intron 20.0%
!!! TTTTAATCTCTATAATCGTT+TGG - chr4_2:70236239-70236258 None:intergenic 20.0%
!! TAATAGTCAAACAGAATAAT+AGG - chr4_2:70236489-70236508 None:intergenic 20.0%
!! ATCTTTACATGTATTTGTAT+GGG + chr4_2:70236747-70236766 Msa0619160:intron 20.0%
!! TGACAAAGCATATTATATTA+AGG + chr4_2:70236947-70236966 Msa0619160:intron 20.0%
!! GACAAAGCATATTATATTAA+GGG + chr4_2:70236948-70236967 Msa0619160:intron 20.0%
!!! AATATTTTTTTACGCAAGTT+TGG - chr4_2:70237173-70237192 None:intergenic 20.0%
!!! TATTTTGATTGTTATCATCT+AGG - chr4_2:70237612-70237631 None:intergenic 20.0%
! GAGAAATGAAAGAAAAAGAA+TGG - chr4_2:70232291-70232310 None:intergenic 25.0%
! TGTTCTTATAACAATATTCC+AGG + chr4_2:70232641-70232660 Msa0619160:CDS 25.0%
! CTACACTTTCAAAAACAAAA+GGG - chr4_2:70232754-70232773 None:intergenic 25.0%
! ACTACACTTTCAAAAACAAA+AGG - chr4_2:70232755-70232774 None:intergenic 25.0%
!!! TTTTGTCATTATTTAAAGCG+AGG + chr4_2:70232777-70232796 Msa0619160:intron 25.0%
! TTGCATATTAATCACGTTAT+AGG - chr4_2:70232934-70232953 None:intergenic 25.0%
! ATAACGTGATTAATATGCAA+AGG + chr4_2:70232934-70232953 Msa0619160:intron 25.0%
! TAACGTGATTAATATGCAAA+GGG + chr4_2:70232935-70232954 Msa0619160:intron 25.0%
! TTAAAGAGCTTATTGGATTA+AGG - chr4_2:70233203-70233222 None:intergenic 25.0%
! AGTTATCTTAAAGAGCTTAT+TGG - chr4_2:70233210-70233229 None:intergenic 25.0%
!!! AAGCTCTTTAAGATAACTTT+TGG + chr4_2:70233212-70233231 Msa0619160:intron 25.0%
! GTGATAGAAAATATATTCTC+AGG - chr4_2:70233444-70233463 None:intergenic 25.0%
! AAAATGTAAGGATCCAAAAT+GGG - chr4_2:70233666-70233685 None:intergenic 25.0%
!!! TGATGGTTTTGCTTAAAAAA+TGG - chr4_2:70233840-70233859 None:intergenic 25.0%
!!! TATTGGTTCAAGTAAGAAAA+TGG - chr4_2:70233914-70233933 None:intergenic 25.0%
!! GATCTATTCTGCAATTTTAT+TGG - chr4_2:70233931-70233950 None:intergenic 25.0%
! CAATACAAGTATGATTACTT+TGG + chr4_2:70234038-70234057 Msa0619160:intron 25.0%
!! TTAGCTATTCATTTTGTGAT+TGG + chr4_2:70234142-70234161 Msa0619160:CDS 25.0%
! ATCAAATGTACCATTTGAAT+AGG + chr4_2:70234260-70234279 Msa0619160:intron 25.0%
! TTCTTTATTGCCTATTCAAA+TGG - chr4_2:70234273-70234292 None:intergenic 25.0%
! TTCTTTATTGCCTATTCAAA+TGG - chr4_2:70234273-70234292 None:intergenic 25.0%
! TTATGCAATAGATAAAAACG+GGG + chr4_2:70234503-70234522 Msa0619160:intron 25.0%
!! AAAACAGTTACTTTGATTCA+TGG + chr4_2:70234621-70234640 Msa0619160:intron 25.0%
!! TTATAGTGATACATTGATTG+AGG + chr4_2:70234734-70234753 Msa0619160:intron 25.0%
! TGGGATGTAATTAAAGAAAT+AGG - chr4_2:70234913-70234932 None:intergenic 25.0%
! TGTACAATCAATCAATATAG+AGG - chr4_2:70235470-70235489 None:intergenic 25.0%
! ATAGTTTACATTTATAGTCG+AGG + chr4_2:70235674-70235693 Msa0619160:intron 25.0%
! TTTATTTCAAACAAAGTTGG+GGG - chr4_2:70235756-70235775 None:intergenic 25.0%
! GTTTATTTCAAACAAAGTTG+GGG - chr4_2:70235757-70235776 None:intergenic 25.0%
!!! TCTTAAAACCTTTTTAAGAG+AGG - chr4_2:70235813-70235832 None:intergenic 25.0%
! TTGTTAAATAACAGCTATAG+CGG + chr4_2:70235881-70235900 Msa0619160:intron 25.0%
!! TGTCTTTTTATCTTTTAGCA+GGG - chr4_2:70236041-70236060 None:intergenic 25.0%
!! ATGTCTTTTTATCTTTTAGC+AGG - chr4_2:70236042-70236061 None:intergenic 25.0%
!! GATGACAATTTTTACTAAAG+TGG + chr4_2:70236113-70236132 Msa0619160:intron 25.0%
!!! ACTGATTTGAACCATATTAA+TGG - chr4_2:70236154-70236173 None:intergenic 25.0%
!! TTGTAACAAGCTTTTATTGT+AGG - chr4_2:70236379-70236398 None:intergenic 25.0%
!!! TACAATAAAAGCTTGTTACA+AGG + chr4_2:70236378-70236397 Msa0619160:intron 25.0%
! TAAGATATTGTGAATTGTTC+CGG + chr4_2:70236515-70236534 Msa0619160:intron 25.0%
! TACAAATACATGTAAAGATG+AGG - chr4_2:70236746-70236765 None:intergenic 25.0%
! CATCTTTACATGTATTTGTA+TGG + chr4_2:70236746-70236765 Msa0619160:intron 25.0%
!!! ACAAGATCACTCTTTTTTAT+TGG - chr4_2:70237533-70237552 None:intergenic 25.0%
! ACAAATTGAAATGGAGTTAA+AGG - chr4_2:70237757-70237776 None:intergenic 25.0%
!!! CATTTCAATTTGTTAGCTTT+GGG + chr4_2:70237764-70237783 Msa0619160:intron 25.0%
! AAGAATTATTAGATTCGCAT+CGG - chr4_2:70237839-70237858 None:intergenic 25.0%
!!! TTTTTGCTGTAAATTGAGTT+CGG + chr4_2:70238233-70238252 Msa0619160:three_prime_UTR 25.0%
!! ACTCTATCTTCTTCTATTTT+GGG + chr4_2:70238312-70238331 Msa0619160:three_prime_UTR 25.0%
AATCTAATTGGAATGGATGA+AGG - chr4_2:70232257-70232276 None:intergenic 30.0%
GAAGCAAAATCTAATTGGAA+TGG - chr4_2:70232264-70232283 None:intergenic 30.0%
ATGAAAGAAAAAGAATGGAG+TGG - chr4_2:70232286-70232305 None:intergenic 30.0%
ATTTCTCAAACAAATCTACC+AGG + chr4_2:70232304-70232323 Msa0619160:five_prime_UTR 30.0%
!!! TTCCATTCCTTATTTTATCG+AGG + chr4_2:70232406-70232425 Msa0619160:intron 30.0%
ATCCTCGATAAAATAAGGAA+TGG - chr4_2:70232411-70232430 None:intergenic 30.0%
TAACGATCCTCGATAAAATA+AGG - chr4_2:70232416-70232435 None:intergenic 30.0%
TGTTTAATTATAGCAGAACC+TGG - chr4_2:70232662-70232681 None:intergenic 30.0%
CTGTGAACAGTGTAATTAAT+TGG - chr4_2:70232703-70232722 None:intergenic 30.0%
TTAATTACACTGTTCACAGT+TGG + chr4_2:70232704-70232723 Msa0619160:intron 30.0%
!!! AAAGCGAGGTTTTGTTTTTT+TGG + chr4_2:70232791-70232810 Msa0619160:intron 30.0%
TAAGCAAATTTGTAGATGCT+AGG + chr4_2:70232819-70232838 Msa0619160:intron 30.0%
!! ACTCTATGATTTTGATCTCA+TGG - chr4_2:70232850-70232869 None:intergenic 30.0%
AACATTCAACAGAATTTGGA+AGG - chr4_2:70232902-70232921 None:intergenic 30.0%
TTGAATATAATCGCATGTGT+CGG - chr4_2:70233087-70233106 None:intergenic 30.0%
TGACATCAACACTAATTAGA+AGG - chr4_2:70233127-70233146 None:intergenic 30.0%
! ACACTTTTCCTTGAAATATG+CGG - chr4_2:70233574-70233593 None:intergenic 30.0%
! AAAATAAGTGCTTCCCATTT+TGG + chr4_2:70233650-70233669 Msa0619160:intron 30.0%
CAAAATGTAAGGATCCAAAA+TGG - chr4_2:70233667-70233686 None:intergenic 30.0%
! GGTTTTGCTTAAAAAATGGA+AGG - chr4_2:70233836-70233855 None:intergenic 30.0%
CTGATATTACTATCTGTTGA+TGG - chr4_2:70233857-70233876 None:intergenic 30.0%
ATACTTTCAAATTGACATGC+AGG + chr4_2:70234069-70234088 Msa0619160:intron 30.0%
AATTTCTTGTCTTTGTTCAC+AGG + chr4_2:70234177-70234196 Msa0619160:intron 30.0%
ATTTCTTGTCTTTGTTCACA+GGG + chr4_2:70234178-70234197 Msa0619160:intron 30.0%
! GCTACACAATTTACATGTTT+TGG - chr4_2:70234216-70234235 None:intergenic 30.0%
ACTTGAATATGAACACTAGT+TGG - chr4_2:70234454-70234473 None:intergenic 30.0%
TATGCAATAGATAAAAACGG+GGG + chr4_2:70234504-70234523 Msa0619160:intron 30.0%
! CAAAGTAACTGTTTTGCAAT+AGG - chr4_2:70234616-70234635 None:intergenic 30.0%
AATCAGCAAGACTTGTAATA+TGG - chr4_2:70234647-70234666 None:intergenic 30.0%
TTGATTCATGGCCATATTAT+AGG + chr4_2:70234676-70234695 Msa0619160:intron 30.0%
AATCAGCAAGACCTATAATA+TGG - chr4_2:70234690-70234709 None:intergenic 30.0%
!! AAGCAGAAAATAAGGGTATT+GGG - chr4_2:70234932-70234951 None:intergenic 30.0%
ATATATTATAAGCTGCTCCA+AGG + chr4_2:70234954-70234973 Msa0619160:intron 30.0%
TTCTACATACCAATTCATGA+TGG + chr4_2:70235190-70235209 Msa0619160:intron 30.0%
AACAAAAGATCCGTAAATGT+GGG - chr4_2:70235354-70235373 None:intergenic 30.0%
GAATATTTCTTCAACCAGTT+AGG + chr4_2:70235383-70235402 Msa0619160:intron 30.0%
GATTGATTGTACATATATGG+TGG + chr4_2:70235477-70235496 Msa0619160:intron 30.0%
CTCTCATATTGTTAAAGTAG+AGG - chr4_2:70235545-70235564 None:intergenic 30.0%
! CATTTGCTTTCTTGTTATGT+TGG + chr4_2:70235705-70235724 Msa0619160:intron 30.0%
!! TAAAACCTTTTTAAGAGAGG+AGG - chr4_2:70235810-70235829 None:intergenic 30.0%
AGAAATAATTAGGTGCTTAC+TGG + chr4_2:70235830-70235849 Msa0619160:intron 30.0%
! TTATCAAATAGGTGCTATAG+TGG + chr4_2:70235949-70235968 Msa0619160:intron 30.0%
!! AAGGTACTGAACCATTAATA+TGG + chr4_2:70236140-70236159 Msa0619160:intron 30.0%
CAGTTAATATGCTTCAATTC+AGG - chr4_2:70236300-70236319 None:intergenic 30.0%
CAAACAGAATAATAGGAGTT+AGG - chr4_2:70236482-70236501 None:intergenic 30.0%
AATGACAAGTTTATGCATCA+GGG - chr4_2:70236618-70236637 None:intergenic 30.0%
AAATGACAAGTTTATGCATC+AGG - chr4_2:70236619-70236638 None:intergenic 30.0%
! CATAAACTTGTCATTTCTAC+AGG + chr4_2:70236623-70236642 Msa0619160:CDS 30.0%
TACATGTATTTGTATGGGAA+TGG + chr4_2:70236752-70236771 Msa0619160:intron 30.0%
! AAGTTTGGTGACCAAAATTA+TGG - chr4_2:70237158-70237177 None:intergenic 30.0%
!!! CTGTTTTTTCTTACAGAATC+TGG - chr4_2:70237364-70237383 None:intergenic 30.0%
CAGATTCTGTAAGAAAAAAC+AGG + chr4_2:70237362-70237381 Msa0619160:intron 30.0%
CGACAATGTAAATACATACA+AGG - chr4_2:70237394-70237413 None:intergenic 30.0%
TGTATGTATTTACATTGTCG+TGG + chr4_2:70237394-70237413 Msa0619160:intron 30.0%
! ACTAATTGATTCAGAACACT+AGG - chr4_2:70237447-70237466 None:intergenic 30.0%
!!! TCACTCTTTTTTATTGGAGA+AGG - chr4_2:70237527-70237546 None:intergenic 30.0%
CCAAAGCTAACAAATTGAAA+TGG - chr4_2:70237766-70237785 None:intergenic 30.0%
!! CCATTTCAATTTGTTAGCTT+TGG + chr4_2:70237763-70237782 Msa0619160:intron 30.0%
ATAATTCTTCTGTATCTTGC+AGG + chr4_2:70237850-70237869 Msa0619160:intron 30.0%
GAAATTCAAACTGTTGCTAT+TGG - chr4_2:70238111-70238130 None:intergenic 30.0%
TAGCAACAGTTTGAATTTCT+AGG + chr4_2:70238112-70238131 Msa0619160:three_prime_UTR 30.0%
TACAACATACAATCTCTTAC+AGG - chr4_2:70238285-70238304 None:intergenic 30.0%
! CACTCTATCTTCTTCTATTT+TGG + chr4_2:70238311-70238330 Msa0619160:three_prime_UTR 30.0%
GAGTGGAAGCAAAATCTAAT+TGG - chr4_2:70232269-70232288 None:intergenic 35.0%
TTATCGAGGATCGTTAATTG+AGG + chr4_2:70232420-70232439 Msa0619160:intron 35.0%
TTAGCATCCATTACATACAG+CGG - chr4_2:70232482-70232501 None:intergenic 35.0%
TGTTCAAATGTTGCATCTAC+CGG + chr4_2:70232505-70232524 Msa0619160:CDS 35.0%
GTTATTCTCACACAATTCTC+GGG - chr4_2:70232542-70232561 None:intergenic 35.0%
GGTTATTCTCACACAATTCT+CGG - chr4_2:70232543-70232562 None:intergenic 35.0%
GAGAATTGTGTGAGAATAAC+CGG + chr4_2:70232542-70232561 Msa0619160:CDS 35.0%
!!! CTGAAGCTTTTTCAGTTTAC+CGG - chr4_2:70232585-70232604 None:intergenic 35.0%
TGAAAAAGCTTCAGACGATT+CGG + chr4_2:70232591-70232610 Msa0619160:CDS 35.0%
GTGATTAATATGCAAAGGGA+GGG + chr4_2:70232939-70232958 Msa0619160:intron 35.0%
! GGTAAAAGCTGGCTTAATAT+TGG - chr4_2:70233489-70233508 None:intergenic 35.0%
! ATTAAGCCAGCTTTTACCAT+TGG + chr4_2:70233491-70233510 Msa0619160:intron 35.0%
AATGCTATTCAAGCATCCAA+TGG - chr4_2:70233510-70233529 None:intergenic 35.0%
GCTTGAATAGCATTTACTTC+TGG + chr4_2:70233516-70233535 Msa0619160:intron 35.0%
GGAATTTACCGCATATTTCA+AGG + chr4_2:70233563-70233582 Msa0619160:intron 35.0%
GCATATTTCAAGGAAAAGTG+TGG + chr4_2:70233573-70233592 Msa0619160:intron 35.0%
!!! TGGGAAGCACTTATTTTAGT+AGG - chr4_2:70233647-70233666 None:intergenic 35.0%
TACTCTTGTAGCTTCAACAT+TGG + chr4_2:70233697-70233716 Msa0619160:intron 35.0%
AGATTCTGCCGTATTTAAGT+GGG + chr4_2:70233956-70233975 Msa0619160:CDS 35.0%
ATGTTGTTGGTCAGTTTCTT+TGG + chr4_2:70233989-70234008 Msa0619160:intron 35.0%
ATCATACTTGTATTGCATGC+CGG - chr4_2:70234033-70234052 None:intergenic 35.0%
AAATTGACATGCAGGAATGA+TGG + chr4_2:70234077-70234096 Msa0619160:intron 35.0%
AATTGACATGCAGGAATGAT+GGG + chr4_2:70234078-70234097 Msa0619160:intron 35.0%
GCCAAATGTACCATTTGAAT+AGG + chr4_2:70234362-70234381 Msa0619160:intron 35.0%
GCCTATTCAAATGGTACATT+TGG - chr4_2:70234264-70234283 None:intergenic 35.0%
ATGCAATAGATAAAAACGGG+GGG + chr4_2:70234505-70234524 Msa0619160:intron 35.0%
! TGATACATTGATTGAGGAAG+AGG + chr4_2:70234740-70234759 Msa0619160:CDS 35.0%
GCTGATATATTCAAGCTCTA+TGG + chr4_2:70234780-70234799 Msa0619160:CDS 35.0%
! GAAGCAGAAAATAAGGGTAT+TGG - chr4_2:70234933-70234952 None:intergenic 35.0%
GCTGAAATACCAATTCATGT+TGG + chr4_2:70235144-70235163 Msa0619160:intron 35.0%
! TGTAGAGTACCAACATGAAT+TGG - chr4_2:70235156-70235175 None:intergenic 35.0%
TGGTACTCTACAATTAACAG+TGG + chr4_2:70235164-70235183 Msa0619160:intron 35.0%
TGTCAAGTACCATCATGAAT+TGG - chr4_2:70235202-70235221 None:intergenic 35.0%
CAACAAAAGATCCGTAAATG+TGG - chr4_2:70235355-70235374 None:intergenic 35.0%
TTACTTGCAGAAATCCTAAC+TGG - chr4_2:70235400-70235419 None:intergenic 35.0%
! TAGTTTGTAGAGACAGCAAA+TGG + chr4_2:70235427-70235446 Msa0619160:intron 35.0%
AGTTTGTAGAGACAGCAAAT+GGG + chr4_2:70235428-70235447 Msa0619160:intron 35.0%
TTTCATATGATCGTATCAGC+TGG + chr4_2:70235642-70235661 Msa0619160:intron 35.0%
TTCATATGATCGTATCAGCT+GGG + chr4_2:70235643-70235662 Msa0619160:intron 35.0%
TTACATTTATAGTCGAGGTC+TGG + chr4_2:70235679-70235698 Msa0619160:intron 35.0%
!!! GTTATGTTGGCTTCTAGTTT+TGG + chr4_2:70235718-70235737 Msa0619160:intron 35.0%
!!! AGAGAGGAGGATTTGTTTTA+GGG - chr4_2:70235797-70235816 None:intergenic 35.0%
!! AAGAGAGGAGGATTTGTTTT+AGG - chr4_2:70235798-70235817 None:intergenic 35.0%
CAAATCCTCCTCTCTTAAAA+AGG + chr4_2:70235802-70235821 Msa0619160:intron 35.0%
! AAAGCAACATGTCTTTTAGC+AGG + chr4_2:70236256-70236275 Msa0619160:intron 35.0%
! AAGCAACATGTCTTTTAGCA+GGG + chr4_2:70236257-70236276 Msa0619160:intron 35.0%
AACAGCATAATGTCTGATGA+TGG + chr4_2:70236428-70236447 Msa0619160:intron 35.0%
TTGTTTACCATTTCAGACTG+AGG + chr4_2:70236577-70236596 Msa0619160:intron 35.0%
! AAACTTGTCATTTCTACAGG+TGG + chr4_2:70236626-70236645 Msa0619160:CDS 35.0%
!! ATTCGGTGTAATCAATGCAT+TGG - chr4_2:70237058-70237077 None:intergenic 35.0%
!! TCTGATCTTTTTGAAGAGAG+AGG + chr4_2:70237247-70237266 Msa0619160:CDS 35.0%
TTCTAATGAGACTCTAGCAT+TGG - chr4_2:70237290-70237309 None:intergenic 35.0%
! CTAGGAAGCATATAACATGA+AGG - chr4_2:70237594-70237613 None:intergenic 35.0%
TGCAGATATAGCAACAAAAC+TGG + chr4_2:70237660-70237679 Msa0619160:intron 35.0%
GCAGATATAGCAACAAAACT+GGG + chr4_2:70237661-70237680 Msa0619160:intron 35.0%
! ACAAATCAGACGCATCTTTT+CGG - chr4_2:70237687-70237706 None:intergenic 35.0%
TCCAACTGAAATTGCAATTG+AGG + chr4_2:70237708-70237727 Msa0619160:CDS 35.0%
ACCTCAATTGCAATTTCAGT+TGG - chr4_2:70237712-70237731 None:intergenic 35.0%
! GCAAATTGGCAACTTTTTGA+AGG + chr4_2:70237880-70237899 Msa0619160:CDS 35.0%
!! AACTTTTTGAAGGCAGAAGA+TGG + chr4_2:70237890-70237909 Msa0619160:CDS 35.0%
TGCAAGATAGTAGTGTGATT+TGG + chr4_2:70237919-70237938 Msa0619160:exon 35.0%
CAATTTGCGGTTTGCAATTA+AGG + chr4_2:70237980-70237999 Msa0619160:intron 35.0%
CTATACGAAAGATCCATCTA+CGG + chr4_2:70238384-70238403 Msa0619160:three_prime_UTR 35.0%
AAAGAGATACTGAACTGACC+TGG - chr4_2:70232325-70232344 None:intergenic 40.0%
GAATGGAAACCGAAACCAAA+AGG - chr4_2:70232394-70232413 None:intergenic 40.0%
TGTATTGCCGCTGTATGTAA+TGG + chr4_2:70232472-70232491 Msa0619160:exon 40.0%
TAACCGGTTGTTCTTTGAGT+CGG + chr4_2:70232558-70232577 Msa0619160:CDS 40.0%
CGTGATTAATATGCAAAGGG+AGG + chr4_2:70232938-70232957 Msa0619160:intron 40.0%
!! CAAAGGGAGGGTATTTAGAA+TGG + chr4_2:70232951-70232970 Msa0619160:intron 40.0%
! ACTTTGGATCAGAAGTGTGT+CGG - chr4_2:70233029-70233048 None:intergenic 40.0%
TTCTGATCCAAAGTGTGTTC+AGG + chr4_2:70233035-70233054 Msa0619160:intron 40.0%
CAATAGAACGTAACAGTGGA+TGG - chr4_2:70233244-70233263 None:intergenic 40.0%
GCTACAATAGAACGTAACAG+TGG - chr4_2:70233248-70233267 None:intergenic 40.0%
ATCCAATCACAAGTAGCTCA+TGG + chr4_2:70233314-70233333 Msa0619160:intron 40.0%
TTCCATGAGCTACTTGTGAT+TGG - chr4_2:70233319-70233338 None:intergenic 40.0%
! GTGACTATTAGGGGAGTTTT+GGG - chr4_2:70233409-70233428 None:intergenic 40.0%
! TGTGACTATTAGGGGAGTTT+TGG - chr4_2:70233410-70233429 None:intergenic 40.0%
AAGCATCCAATGGTAAAAGC+TGG - chr4_2:70233500-70233519 None:intergenic 40.0%
GTAGCTTCAACATTGGAATC+TGG + chr4_2:70233704-70233723 Msa0619160:intron 40.0%
CTTCAACATTGGAATCTGGA+GGG + chr4_2:70233708-70233727 Msa0619160:CDS 40.0%
CAGATTCTGCCGTATTTAAG+TGG + chr4_2:70233955-70233974 Msa0619160:CDS 40.0%
ATACAGCGCCCACTTAAATA+CGG - chr4_2:70233967-70233986 None:intergenic 40.0%
TCATACTTGTATTGCATGCC+GGG - chr4_2:70234032-70234051 None:intergenic 40.0%
AATAGATAAAAACGGGGGGA+GGG + chr4_2:70234509-70234528 Msa0619160:intron 40.0%
AAAACTAGAGCAAAATCCCC+AGG - chr4_2:70234545-70234564 None:intergenic 40.0%
! TGTTTTGCAATAGGCAGATG+TGG - chr4_2:70234607-70234626 None:intergenic 40.0%
TTGATTGAGGAAGAGGTTGA+TGG + chr4_2:70234747-70234766 Msa0619160:CDS 40.0%
AGAATCTTTCTTTCGCGAGA+AGG + chr4_2:70234803-70234822 Msa0619160:CDS 40.0%
AAAGATCCGTAAATGTGGGA+CGG - chr4_2:70235350-70235369 None:intergenic 40.0%
TAGTAACAAGCTGGTAAGAG+GGG - chr4_2:70235510-70235529 None:intergenic 40.0%
CTAGTAACAAGCTGGTAAGA+GGG - chr4_2:70235511-70235530 None:intergenic 40.0%
CAAACCTGTAAAGTTGGACA+GGG - chr4_2:70235607-70235626 None:intergenic 40.0%
TGTTGCCAAACCTGTAAAGT+TGG - chr4_2:70235613-70235632 None:intergenic 40.0%
TTGTGTGTGATTAGTGACCA+GGG + chr4_2:70236000-70236019 Msa0619160:intron 40.0%
! AGCAACATGTCTTTTAGCAG+GGG + chr4_2:70236258-70236277 Msa0619160:intron 40.0%
!! ATGTCTGATGATGGCATGTA+CGG + chr4_2:70236437-70236456 Msa0619160:intron 40.0%
TTCAATGCCTCAGTCTGAAA+TGG - chr4_2:70236587-70236606 None:intergenic 40.0%
TGCCAGGAAATATATGCACA+AGG + chr4_2:70236777-70236796 Msa0619160:intron 40.0%
GCCAGGAAATATATGCACAA+GGG + chr4_2:70236778-70236797 Msa0619160:intron 40.0%
CCAGGAAATATATGCACAAG+GGG + chr4_2:70236779-70236798 Msa0619160:intron 40.0%
CAGGAAATATATGCACAAGG+GGG + chr4_2:70236780-70236799 Msa0619160:intron 40.0%
TGTTTGGTTAGATGTACCAG+TGG + chr4_2:70236807-70236826 Msa0619160:CDS 40.0%
ACCAGTTGTAATTCACATGC+AGG + chr4_2:70237210-70237229 Msa0619160:intron 40.0%
! GAAATGGAGTTAAAGGCATG+AGG - chr4_2:70237750-70237769 None:intergenic 40.0%
!! TTTGTTAGCTTTGGGCAAAC+TGG + chr4_2:70237772-70237791 Msa0619160:intron 40.0%
TGGGCAAACTGGAATATTCA+CGG + chr4_2:70237783-70237802 Msa0619160:intron 40.0%
!! TTTTTGAAGGCAGAAGATGG+TGG + chr4_2:70237893-70237912 Msa0619160:CDS 40.0%
!! TTCTATTTTGGGTCTCCCAT+GGG + chr4_2:70238323-70238342 Msa0619160:three_prime_UTR 40.0%
ACTAATGTGTGTTCCGTAGA+TGG - chr4_2:70238400-70238419 None:intergenic 40.0%
CAGAGTGCAAACTGAAACGA+AGG - chr4_2:70232454-70232473 None:intergenic 45.0%
TTCTCACACAATTCTCGGGT+CGG - chr4_2:70232538-70232557 None:intergenic 45.0%
TCGGTGCAAGAAGGTTTCTA+CGG + chr4_2:70232610-70232629 Msa0619160:CDS 45.0%
!! TCAGAAGTGTGTCGGTGTTA+CGG - chr4_2:70233021-70233040 None:intergenic 45.0%
GTCAACACCTGAACACACTT+TGG - chr4_2:70233045-70233064 None:intergenic 45.0%
!! TGTGTTCAGGTGTTGACATG+TGG + chr4_2:70233048-70233067 Msa0619160:intron 45.0%
CAAGCTGGTGTGACTATTAG+GGG - chr4_2:70233418-70233437 None:intergenic 45.0%
CCAAGCTGGTGTGACTATTA+GGG - chr4_2:70233419-70233438 None:intergenic 45.0%
TATATTCTCAGGTGCCAAGC+TGG - chr4_2:70233433-70233452 None:intergenic 45.0%
GCTTCAACATTGGAATCTGG+AGG + chr4_2:70233707-70233726 Msa0619160:intron 45.0%
AGAACCAACTCTTCCTCAAG+GGG - chr4_2:70233743-70233762 None:intergenic 45.0%
CAGAACCAACTCTTCCTCAA+GGG - chr4_2:70233744-70233763 None:intergenic 45.0%
TCAGAACCAACTCTTCCTCA+AGG - chr4_2:70233745-70233764 None:intergenic 45.0%
!! TGAGGAAGAGTTGGTTCTGA+AGG + chr4_2:70233745-70233764 Msa0619160:CDS 45.0%
! GGGCGCTGTATATATGTTGT+TGG + chr4_2:70233976-70233995 Msa0619160:CDS 45.0%
GTTGATGTCTCGTGATTACC+CGG + chr4_2:70234011-70234030 Msa0619160:intron 45.0%
CAATAGATAAAAACGGGGGG+AGG + chr4_2:70234508-70234527 Msa0619160:intron 45.0%
ATAGATAAAAACGGGGGGAG+GGG + chr4_2:70234510-70234529 Msa0619160:intron 45.0%
ATCTTTCTTTCGCGAGAAGG+AGG + chr4_2:70234806-70234825 Msa0619160:CDS 45.0%
TATAAGCTGCTCCAAGGAGA+CGG + chr4_2:70234960-70234979 Msa0619160:intron 45.0%
ATATTGATCTCCCGTCTCCT+TGG - chr4_2:70234974-70234993 None:intergenic 45.0%
TTGACACTTAGCAGTGTCAC+AGG + chr4_2:70235216-70235235 Msa0619160:intron 45.0%
! AGTTCCTTTTACCGAGTCAG+TGG + chr4_2:70235319-70235338 Msa0619160:intron 45.0%
!! CATTCCACTGACTCGGTAAA+AGG - chr4_2:70235326-70235345 None:intergenic 45.0%
GAATGTCCGTCCCACATTTA+CGG + chr4_2:70235341-70235360 Msa0619160:intron 45.0%
AGTAACAAGCTGGTAAGAGG+GGG - chr4_2:70235509-70235528 None:intergenic 45.0%
CCTAGTAACAAGCTGGTAAG+AGG - chr4_2:70235512-70235531 None:intergenic 45.0%
!! CCTCTTACCAGCTTGTTACT+AGG + chr4_2:70235509-70235528 Msa0619160:intron 45.0%
TGTGACATGGGTGAACAAAC+AGG - chr4_2:70235568-70235587 None:intergenic 45.0%
TTGTTCACCCATGTCACAGA+TGG + chr4_2:70235570-70235589 Msa0619160:intron 45.0%
CCAAACCTGTAAAGTTGGAC+AGG - chr4_2:70235608-70235627 None:intergenic 45.0%
CCTGTCCAACTTTACAGGTT+TGG + chr4_2:70235605-70235624 Msa0619160:intron 45.0%
CATTTATAGTCGAGGTCTGG+AGG + chr4_2:70235682-70235701 Msa0619160:intron 45.0%
GTTGTGTGTGATTAGTGACC+AGG + chr4_2:70235999-70236018 Msa0619160:intron 45.0%
! ATCTTTTAGCAGGGAGTCCA+TGG - chr4_2:70236032-70236051 None:intergenic 45.0%
! TCTTTTAGCAGGGGAGTTCA+TGG + chr4_2:70236267-70236286 Msa0619160:intron 45.0%
TGACTGTGTGACAGAACCAT+AGG - chr4_2:70236545-70236564 None:intergenic 45.0%
! CTTGTCATTTCTACAGGTGG+AGG + chr4_2:70236629-70236648 Msa0619160:CDS 45.0%
CTGTTGTGCGGCCTATTAAT+TGG + chr4_2:70236654-70236673 Msa0619160:CDS 45.0%
!! TTGTATGGGAATGGATTGCC+AGG + chr4_2:70236761-70236780 Msa0619160:intron 45.0%
CCCCTTGTGCATATATTTCC+TGG - chr4_2:70236782-70236801 None:intergenic 45.0%
! AGATGTACCAGTGGAAGCAT+TGG + chr4_2:70236816-70236835 Msa0619160:CDS 45.0%
CTGCTTCATCGTGTAGAAGA+GGG - chr4_2:70236876-70236895 None:intergenic 45.0%
GCCTGCATGTGAATTACAAC+TGG - chr4_2:70237214-70237233 None:intergenic 45.0%
ATTAAGGCCATGCTGTTGTG+CGG + chr4_2:70237996-70238015 Msa0619160:intron 45.0%
! TCAGCCTTATCCCACTAAGT+GGG - chr4_2:70238186-70238205 None:intergenic 45.0%
! TTCAGCCTTATCCCACTAAG+TGG - chr4_2:70238187-70238206 None:intergenic 45.0%
!! CTTCTATTTTGGGTCTCCCA+TGG + chr4_2:70238322-70238341 Msa0619160:three_prime_UTR 45.0%
AGGCACCAATTAAGACCCAT+GGG - chr4_2:70238341-70238360 None:intergenic 45.0%
! AAGGCACCAATTAAGACCCA+TGG - chr4_2:70238342-70238361 None:intergenic 45.0%
CAAGCAAGACTGAAGCATGA+AGG - chr4_2:70238361-70238380 None:intergenic 45.0%
!! TTAATTGAAAAAAAAAAAAA+AGG + chr4_2:70233542-70233561 Msa0619160:intron 5.0%
!! AAAAAATAATTTCTAAATTT+GGG - chr4_2:70237012-70237031 None:intergenic 5.0%
!! TAAAAAATAATTTCTAAATT+TGG - chr4_2:70237013-70237032 None:intergenic 5.0%
TCTCACACAATTCTCGGGTC+GGG - chr4_2:70232537-70232556 None:intergenic 50.0%
GGTCCGACTCAAAGAACAAC+CGG - chr4_2:70232564-70232583 None:intergenic 50.0%
GGTTGTTCTTTGAGTCGGAC+CGG + chr4_2:70232563-70232582 Msa0619160:CDS 50.0%
!! TCAGACGATTCGGTGCAAGA+AGG + chr4_2:70232601-70232620 Msa0619160:CDS 50.0%
!! CAGAAGTGTGTCGGTGTTAC+GGG - chr4_2:70233020-70233039 None:intergenic 50.0%
CCCTAATAGTCACACCAGCT+TGG + chr4_2:70233416-70233435 Msa0619160:intron 50.0%
GCCAAGCTGGTGTGACTATT+AGG - chr4_2:70233420-70233439 None:intergenic 50.0%
AGGGCATAAGTTTCCCCTTG+AGG + chr4_2:70233727-70233746 Msa0619160:CDS 50.0%
GTTTCCCCTTGAGGAAGAGT+TGG + chr4_2:70233736-70233755 Msa0619160:CDS 50.0%
!! ATGCAGGAATGATGGGCTCT+GGG + chr4_2:70234085-70234104 Msa0619160:intron 50.0%
TAGATAAAAACGGGGGGAGG+GGG + chr4_2:70234511-70234530 Msa0619160:intron 50.0%
GAGAAGGAGGTCAGTTGGAA+AGG + chr4_2:70234819-70234838 Msa0619160:intron 50.0%
ATAAGCTGCTCCAAGGAGAC+GGG + chr4_2:70234961-70234980 Msa0619160:intron 50.0%
! GCACTGACACTTCACATCGA+AGG - chr4_2:70235111-70235130 None:intergenic 50.0%
GTAGAGACAGCAAATGGGCA+TGG + chr4_2:70235433-70235452 Msa0619160:intron 50.0%
ACTCGCTCCTAGTAACAAGC+TGG - chr4_2:70235519-70235538 None:intergenic 50.0%
CCACTGTCCATCTGTGACAT+GGG - chr4_2:70235580-70235599 None:intergenic 50.0%
TCCACTGTCCATCTGTGACA+TGG - chr4_2:70235581-70235600 None:intergenic 50.0%
ACCTGTAAAGTTGGACAGGG+CGG - chr4_2:70235604-70235623 None:intergenic 50.0%
GCTGTATTGCTACAGCGTAG+CGG + chr4_2:70235905-70235924 Msa0619160:intron 50.0%
!! GAATTGTTCCGGCTAGCCTA+TGG + chr4_2:70236526-70236545 Msa0619160:intron 50.0%
TGACAGAACCATAGGCTAGC+CGG - chr4_2:70236537-70236556 None:intergenic 50.0%
! TGCACAAGGGGGTTAGTGTT+TGG + chr4_2:70236791-70236810 Msa0619160:CDS 50.0%
AGGGCGAGAATTAGTTCCCA+CGG - chr4_2:70236857-70236876 None:intergenic 50.0%
CCTGCTTCATCGTGTAGAAG+AGG - chr4_2:70236877-70236896 None:intergenic 50.0%
CCTCTTCTACACGATGAAGC+AGG + chr4_2:70236874-70236893 Msa0619160:CDS 50.0%
AGCAGGAGATGCATACACTG+CGG + chr4_2:70236891-70236910 Msa0619160:CDS 50.0%
!! AAGGTGCTTAAAGAGTGCCC+CGG + chr4_2:70237098-70237117 Msa0619160:intron 50.0%
AAATGTTAACGAGTGCCCCC+GGG - chr4_2:70237119-70237138 None:intergenic 50.0%
GAAATGTTAACGAGTGCCCC+CGG - chr4_2:70237120-70237139 None:intergenic 50.0%
!! TGAGACTCTAGCATTGGCGT+TGG - chr4_2:70237284-70237303 None:intergenic 50.0%
TTGCAGGCGCTAGAGCAAAT+TGG + chr4_2:70237866-70237885 Msa0619160:intron 50.0%
AACAACACCGCACAACAGCA+TGG - chr4_2:70238006-70238025 None:intergenic 50.0%
! CAGCCTTATCCCACTAAGTG+GGG - chr4_2:70238185-70238204 None:intergenic 50.0%
GGTCTCCCATGGGTCTTAAT+TGG + chr4_2:70238333-70238352 Msa0619160:three_prime_UTR 50.0%
TTCTCGGGTCGGGTAAGAAC+CGG - chr4_2:70232527-70232546 None:intergenic 55.0%
!! CATGCAGGAATGATGGGCTC+TGG + chr4_2:70234084-70234103 Msa0619160:intron 55.0%
!! GGCTCTGGGAAGACAACTGT+GGG + chr4_2:70234099-70234118 Msa0619160:CDS 55.0%
!! GCTCTGGGAAGACAACTGTG+GGG + chr4_2:70234100-70234119 Msa0619160:CDS 55.0%
TTCGCGAGAAGGAGGTCAGT+TGG + chr4_2:70234814-70234833 Msa0619160:intron 55.0%
!! AAGCACTGACACGTCGACAC+CGG + chr4_2:70234995-70235014 Msa0619160:intron 55.0%
CACTTAGCAGTGTCACAGGC+AGG + chr4_2:70235220-70235239 Msa0619160:intron 55.0%
! GGACGGACATTCCACTGACT+CGG - chr4_2:70235333-70235352 None:intergenic 55.0%
AACAAGCTGGTAAGAGGGGG+TGG - chr4_2:70235506-70235525 None:intergenic 55.0%
CCCATGTCACAGATGGACAG+TGG + chr4_2:70235577-70235596 Msa0619160:intron 55.0%
ACCGCCCTGTCCAACTTTAC+AGG + chr4_2:70235600-70235619 Msa0619160:CDS 55.0%
TAGCAGGGAGTCCATGGCAT+AGG - chr4_2:70236026-70236045 None:intergenic 55.0%
CTGTTGGCCAATGCTTCCAC+TGG - chr4_2:70236826-70236845 None:intergenic 55.0%
GCCAACAGAATTGCAGCCGT+GGG + chr4_2:70236838-70236857 Msa0619160:CDS 55.0%
TCCCACGGCTGCAATTCTGT+TGG - chr4_2:70236842-70236861 None:intergenic 55.0%
! GTCTTGTTAACGAGTGCCCC+CGG + chr4_2:70236970-70236989 Msa0619160:intron 55.0%
TCTTGTTAACGAGTGCCCCC+GGG + chr4_2:70236971-70236990 Msa0619160:intron 55.0%
!! ATGCTTAAAGAGTGCCCCGG+GGG - chr4_2:70236989-70237008 None:intergenic 55.0%
!! GATGCTTAAAGAGTGCCCCG+GGG - chr4_2:70236990-70237009 None:intergenic 55.0%
!! GGATGCTTAAAGAGTGCCCC+GGG - chr4_2:70236991-70237010 None:intergenic 55.0%
!! GGGATGCTTAAAGAGTGCCC+CGG - chr4_2:70236992-70237011 None:intergenic 55.0%
!! AGGTGCTTAAAGAGTGCCCC+GGG + chr4_2:70237099-70237118 Msa0619160:intron 55.0%
AATGTTAACGAGTGCCCCCG+GGG - chr4_2:70237118-70237137 None:intergenic 55.0%
CACTAAGTGGGGTCGTCAAC+CGG - chr4_2:70238174-70238193 None:intergenic 55.0%
GGTTGACGACCCCACTTAGT+GGG + chr4_2:70238173-70238192 Msa0619160:three_prime_UTR 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr4_2:70238179-70238198 Msa0619160:three_prime_UTR 55.0%
!! GGGCTCTGGGAAGACAACTG+TGG + chr4_2:70234098-70234117 Msa0619160:CDS 60.0%
GGGAGGGGGTCAGTTATCCT+GGG + chr4_2:70234525-70234544 Msa0619160:intron 60.0%
GGAGGGGGTCAGTTATCCTG+GGG + chr4_2:70234526-70234545 Msa0619160:intron 60.0%
AGTGACCAGGGCCTATGCCA+TGG + chr4_2:70236012-70236031 Msa0619160:intron 60.0%
!! CAGGTGGAGGTGCTGTTGTG+CGG + chr4_2:70236642-70236661 Msa0619160:CDS 60.0%
GGCCAACAGAATTGCAGCCG+TGG + chr4_2:70236837-70236856 Msa0619160:CDS 60.0%
CTTGTTAACGAGTGCCCCCG+GGG + chr4_2:70236972-70236991 Msa0619160:intron 60.0%
!! GGTGCTTAAAGAGTGCCCCG+GGG + chr4_2:70237100-70237119 Msa0619160:intron 60.0%
!! GTGCTTAAAGAGTGCCCCGG+GGG + chr4_2:70237101-70237120 Msa0619160:intron 60.0%
CGGTTGACGACCCCACTTAG+TGG + chr4_2:70238172-70238191 Msa0619160:three_prime_UTR 60.0%
GGGGAGGGGGTCAGTTATCC+TGG + chr4_2:70234524-70234543 Msa0619160:intron 65.0%
GGAGTCCATGGCATAGGCCC+TGG - chr4_2:70236020-70236039 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 70232206 70238502 70232206 ID=Msa0619160;Name=Msa0619160
chr4_2 mRNA 70232206 70238502 70232206 ID=Msa0619160-mRNA-1;Parent=Msa0619160;Name=Msa0619160-mRNA-1;_AED=0.22;_eAED=0.22;_QI=148|0.84|0.92|0.92|0.76|0.64|14|502|297
chr4_2 exon 70232206 70232325 70232206 ID=Msa0619160-mRNA-1:exon:20419;Parent=Msa0619160-mRNA-1
chr4_2 exon 70232463 70232662 70232463 ID=Msa0619160-mRNA-1:exon:20420;Parent=Msa0619160-mRNA-1
chr4_2 exon 70233708 70233766 70233708 ID=Msa0619160-mRNA-1:exon:20421;Parent=Msa0619160-mRNA-1
chr4_2 exon 70233943 70233997 70233943 ID=Msa0619160-mRNA-1:exon:20422;Parent=Msa0619160-mRNA-1
chr4_2 exon 70234091 70234163 70234091 ID=Msa0619160-mRNA-1:exon:20423;Parent=Msa0619160-mRNA-1
chr4_2 exon 70234740 70234827 70234740 ID=Msa0619160-mRNA-1:exon:20424;Parent=Msa0619160-mRNA-1
chr4_2 exon 70235589 70235621 70235589 ID=Msa0619160-mRNA-1:exon:20425;Parent=Msa0619160-mRNA-1
chr4_2 exon 70236593 70236675 70236593 ID=Msa0619160-mRNA-1:exon:20426;Parent=Msa0619160-mRNA-1
chr4_2 exon 70236783 70236912 70236783 ID=Msa0619160-mRNA-1:exon:20427;Parent=Msa0619160-mRNA-1
chr4_2 exon 70237232 70237310 70237232 ID=Msa0619160-mRNA-1:exon:20428;Parent=Msa0619160-mRNA-1
chr4_2 exon 70237665 70237729 70237665 ID=Msa0619160-mRNA-1:exon:20429;Parent=Msa0619160-mRNA-1
chr4_2 exon 70237872 70237946 70237872 ID=Msa0619160-mRNA-1:exon:20430;Parent=Msa0619160-mRNA-1
chr4_2 exon 70237997 70238446 70237997 ID=Msa0619160-mRNA-1:exon:20431;Parent=Msa0619160-mRNA-1
chr4_2 exon 70238469 70238502 70238469 ID=Msa0619160-mRNA-1:exon:20432;Parent=Msa0619160-mRNA-1
chr4_2 five_prime_UTR 70232206 70232325 70232206 ID=Msa0619160-mRNA-1:five_prime_utr;Parent=Msa0619160-mRNA-1
chr4_2 five_prime_UTR 70232463 70232490 70232463 ID=Msa0619160-mRNA-1:five_prime_utr;Parent=Msa0619160-mRNA-1
chr4_2 CDS 70232491 70232662 70232491 ID=Msa0619160-mRNA-1:cds;Parent=Msa0619160-mRNA-1
chr4_2 CDS 70233708 70233766 70233708 ID=Msa0619160-mRNA-1:cds;Parent=Msa0619160-mRNA-1
chr4_2 CDS 70233943 70233997 70233943 ID=Msa0619160-mRNA-1:cds;Parent=Msa0619160-mRNA-1
chr4_2 CDS 70234091 70234163 70234091 ID=Msa0619160-mRNA-1:cds;Parent=Msa0619160-mRNA-1
chr4_2 CDS 70234740 70234827 70234740 ID=Msa0619160-mRNA-1:cds;Parent=Msa0619160-mRNA-1
chr4_2 CDS 70235589 70235621 70235589 ID=Msa0619160-mRNA-1:cds;Parent=Msa0619160-mRNA-1
chr4_2 CDS 70236593 70236675 70236593 ID=Msa0619160-mRNA-1:cds;Parent=Msa0619160-mRNA-1
chr4_2 CDS 70236783 70236912 70236783 ID=Msa0619160-mRNA-1:cds;Parent=Msa0619160-mRNA-1
chr4_2 CDS 70237232 70237310 70237232 ID=Msa0619160-mRNA-1:cds;Parent=Msa0619160-mRNA-1
chr4_2 CDS 70237665 70237729 70237665 ID=Msa0619160-mRNA-1:cds;Parent=Msa0619160-mRNA-1
chr4_2 CDS 70237872 70237928 70237872 ID=Msa0619160-mRNA-1:cds;Parent=Msa0619160-mRNA-1
chr4_2 three_prime_UTR 70237929 70237946 70237929 ID=Msa0619160-mRNA-1:three_prime_utr;Parent=Msa0619160-mRNA-1
chr4_2 three_prime_UTR 70237997 70238446 70237997 ID=Msa0619160-mRNA-1:three_prime_utr;Parent=Msa0619160-mRNA-1
chr4_2 three_prime_UTR 70238469 70238502 70238469 ID=Msa0619160-mRNA-1:three_prime_utr;Parent=Msa0619160-mRNA-1
Gene Sequence

>Msa0619160

ATGGATGCTAAAGCTGTTCAAATGTTGCATCTACCGGTTCTTACCCGACCCGAGAATTGTGTGAGAATAACCGGTTGTTCTTTGAGTCGGACCGGTAAACTGAAAAAGCTTCAGACGATTCGGTGCAAGAAGGTTTCTACGGAAGTTGCTTGTTCTTATAACAATATTCCAGCTTCAACATTGGAATCTGGAGGGCATAAGTTTCCCCTTGAGGAAGAGTTGGTTCTGAAGAATAGATCGCAACAGATTCTGCCGTATTTAAGTGGGCGCTGTATATATGTTGTTGGAATGATGGGCTCTGGGAAGACAACTGTGGGGAAAATTATGTCGCAAGCGCTTAGCTATTCATTTTGTGATTGTGATACATTGATTGAGGAAGAGGTTGATGGAAACTCTGTAGCTGATATATTCAAGCTCTATGGAGAATCTTTCTTTCGCGAGAAGGAGATGGACAGTGGACCGCCCTGTCCAACTTTACAGACTGAGGCATTGAATAAGCTGTCCCTGATGCATAAACTTGTCATTTCTACAGGTGGAGGTGCTGTTGTGCGGCCTATTAATTGGAAATATATGCACAAGGGGGTTAGTGTTTGGTTAGATGTACCAGTGGAAGCATTGGCCAACAGAATTGCAGCCGTGGGAACTAATTCTCGCCCTCTTCTACACGATGAAGCAGGAGATGCATACACTGCGGCTTTGATGCGTTTGTCTGATCTTTTTGAAGAGAGAGGTGAATTCTATGCCAACGCCAATGCTAGAGTCTCATTAGAAAATATAGCAACAAAACTGGGCCGAAAAGATGCGTCTGATTTGTCTCCAACTGAAATTGCAATTGAGGCGCTAGAGCAAATTGGCAACTTTTTGAAGGCAGAAGATGGTGGTTATGCAAGATAG

Protein sequence

>Msa0619160

MDAKAVQMLHLPVLTRPENCVRITGCSLSRTGKLKKLQTIRCKKVSTEVACSYNNIPASTLESGGHKFPLEEELVLKNRSQQILPYLSGRCIYVVGMMGSGKTTVGKIMSQALSYSFCDCDTLIEEEVDGNSVADIFKLYGESFFREKEMDSGPPCPTLQTEALNKLSLMHKLVISTGGGAVVRPINWKYMHKGVSVWLDVPVEALANRIAAVGTNSRPLLHDEAGDAYTAALMRLSDLFEERGEFYANANARVSLENIATKLGRKDASDLSPTEIAIEALEQIGNFLKAEDGGYAR*