AlfalfaGEDB | Msa0621470

M. sativa cultivar zhongmu-4 / Msa0621470

KEGG: K11419|K11420
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003824 GO:0005488 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016278 GO:0016279 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031056 GO:0031060 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0032259 GO:0032268 GO:0033043 GO:0033044 GO:0034968 GO:0036211 GO:0040029 GO:0042054 GO:0043170 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051172 GO:0051246 GO:0051252 GO:0051253 GO:0051276 GO:0051570 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:0140110 GO:1900109 GO:1901363 GO:1901564 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF18868.4

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0621470	XP_039685090.1	90.960	1261	103	2	1	1260	3	1253	0.0	2376

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0621470	sp\|O64827\|SUVR5_ARATH	48.865	661	312	8	617	1259	729	1381	0.0	624
Msa0621470	sp\|O64827\|SUVR5_ARATH	39.437	497	253	10	61	516	46	535	1.23e-94	336

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0621470	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0621470	Msa1203270	0.947176	1.118777e-105	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0621470	MtrunA17_Chr4g0075321	57.030	1266	328	17	1	1260	9	1064	0.0	1243
Msa0621470	MtrunA17_Chr5g0403241	60.622	739	268	6	542	1260	772	1507	0.0	885
Msa0621470	MtrunA17_Chr5g0403241	46.057	558	243	10	64	575	129	674	1.14e-136	454
Msa0621470	MtrunA17_Chr8g0373841	64.302	437	136	6	414	845	64	485	0.0	552
Msa0621470	MtrunA17_Chr8g0373891	81.550	271	39	2	1	270	3	263	5.14e-150	452
Msa0621470	MtrunA17_Chr8g0373821	70.358	307	84	3	949	1255	234	533	3.12e-141	439
Msa0621470	MtrunA17_Chr8g0373821	51.852	216	75	5	381	593	51	240	3.52e-54	198
Msa0621470	MtrunA17_Chr4g0075341	39.733	375	107	8	319	690	111	369	3.20e-63	220
Msa0621470	MtrunA17_Chr4g0075341	56.364	110	48	0	362	471	3	112	2.19e-33	133
Msa0621470	MtrunA17_Chr4g0003511	39.091	220	105	6	1064	1260	839	1052	2.06e-39	159

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0621470	AT2G23740.1	48.865	661	312	8	617	1259	722	1374	0.0	624
Msa0621470	AT2G23740.1	39.034	497	248	11	61	516	46	528	6.28e-93	328
Msa0621470	AT2G23740.3	48.865	661	312	8	617	1259	729	1381	0.0	624
Msa0621470	AT2G23740.3	39.437	497	253	10	61	516	46	535	1.25e-95	336
Msa0621470	AT2G23740.6	48.865	661	312	8	617	1259	729	1381	0.0	624
Msa0621470	AT2G23740.6	39.437	497	253	10	61	516	46	535	1.25e-95	336
Msa0621470	AT2G23740.2	48.865	661	312	8	617	1259	729	1381	0.0	624
Msa0621470	AT2G23740.2	39.437	497	253	10	61	516	46	535	1.25e-95	336
Msa0621470	AT2G23740.4	48.148	594	285	7	617	1195	729	1314	7.28e-176	556
Msa0621470	AT2G23740.4	39.437	497	253	10	61	516	46	535	6.34e-96	336

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Find 217 sgRNAs with CRISPR-Local

Find 607 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCATTTCATTACATCA+TGG	0.506495	4_2:-73539685	None:intergenic
AAAATTTGAACAAATCACCG+CGG	0.766203	4_2:+73534864	Msa0621470:CDS
AAAGGAATGATGCTTACACT+TGG	0.656769	4_2:-73540188	None:intergenic
AACAATAGAGCAGCTTCAGG+AGG	0.653928	4_2:+73535997	Msa0621470:CDS
AACACTTGGCGATCATTGGA+TGG	0.561012	4_2:+73540600	Msa0621470:CDS
AACATCATCTCAGAATCTAC+AGG	0.539717	4_2:-73539926	None:intergenic
AACATTATATAAAAGACAAT+TGG	0.470584	4_2:+73535918	Msa0621470:CDS
AACCTCCTTTGGATTTCGGA+CGG	0.583961	4_2:-73541128	None:intergenic
AACTCCTGTGATTTGTGTAA+TGG	0.479715	4_2:+73541716	Msa0621470:CDS
AACTGCATTCCTCTGAGTCT+TGG	0.374388	4_2:+73535942	Msa0621470:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTTGAACAAATCACCG+CGG	+	chr4_2:73534864-73534883	Msa0621470:CDS	30.0%
TCCAACCATTTAGAAAATGA+TGG	-	chr4_2:73534937-73534956	None:intergenic	30.0%
TTGTTCTGCTTATCATTAGT+TGG	-	chr4_2:73535188-73535207	None:intergenic	30.0%
AGAAACAGGGAATTATTCAT+GGG	+	chr4_2:73535229-73535248	Msa0621470:CDS	30.0%
ATTGAAAATGGTACAAGACT+TGG	+	chr4_2:73535322-73535341	Msa0621470:CDS	30.0%
TTGAAAATGGTACAAGACTT+GGG	+	chr4_2:73535323-73535342	Msa0621470:CDS	30.0%
GATTACAAAAAATAGGGGTA+TGG	-	chr4_2:73535454-73535473	None:intergenic	30.0%
GATAGAAGATTATCGTAATG+CGG	+	chr4_2:73535527-73535546	Msa0621470:CDS	30.0%
TTATTCAGATCTTGGAAGAA+TGG	+	chr4_2:73535593-73535612	Msa0621470:CDS	30.0%
TTCATAACTTCCTTATTAGG+AGG	+	chr4_2:73535849-73535868	Msa0621470:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	73534718	73543662	73534718	ID=Msa0621470;Name=Msa0621470
chr4_2	mRNA	73534718	73543662	73534718	ID=Msa0621470-mRNA-1;Parent=Msa0621470;Name=Msa0621470-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0\|0\|0\|1\|1\|1\|11\|0\|1260
chr4_2	exon	73534718	73534987	73534718	ID=Msa0621470-mRNA-1:exon:22050;Parent=Msa0621470-mRNA-1
chr4_2	exon	73535113	73535418	73535113	ID=Msa0621470-mRNA-1:exon:22051;Parent=Msa0621470-mRNA-1
chr4_2	exon	73535522	73535632	73535522	ID=Msa0621470-mRNA-1:exon:22052;Parent=Msa0621470-mRNA-1
chr4_2	exon	73535908	73536018	73535908	ID=Msa0621470-mRNA-1:exon:22053;Parent=Msa0621470-mRNA-1
chr4_2	exon	73539593	73541860	73539593	ID=Msa0621470-mRNA-1:exon:22054;Parent=Msa0621470-mRNA-1
chr4_2	exon	73542069	73542230	73542069	ID=Msa0621470-mRNA-1:exon:22055;Parent=Msa0621470-mRNA-1
chr4_2	exon	73542474	73542590	73542474	ID=Msa0621470-mRNA-1:exon:22056;Parent=Msa0621470-mRNA-1
chr4_2	exon	73542672	73542775	73542672	ID=Msa0621470-mRNA-1:exon:22057;Parent=Msa0621470-mRNA-1
chr4_2	exon	73542859	73542996	73542859	ID=Msa0621470-mRNA-1:exon:22058;Parent=Msa0621470-mRNA-1
chr4_2	exon	73543331	73543418	73543331	ID=Msa0621470-mRNA-1:exon:22059;Parent=Msa0621470-mRNA-1
chr4_2	exon	73543555	73543662	73543555	ID=Msa0621470-mRNA-1:exon:22060;Parent=Msa0621470-mRNA-1
chr4_2	CDS	73534718	73534987	73534718	ID=Msa0621470-mRNA-1:cds;Parent=Msa0621470-mRNA-1
chr4_2	CDS	73535113	73535418	73535113	ID=Msa0621470-mRNA-1:cds;Parent=Msa0621470-mRNA-1
chr4_2	CDS	73535522	73535632	73535522	ID=Msa0621470-mRNA-1:cds;Parent=Msa0621470-mRNA-1
chr4_2	CDS	73535908	73536018	73535908	ID=Msa0621470-mRNA-1:cds;Parent=Msa0621470-mRNA-1
chr4_2	CDS	73539593	73541860	73539593	ID=Msa0621470-mRNA-1:cds;Parent=Msa0621470-mRNA-1
chr4_2	CDS	73542069	73542230	73542069	ID=Msa0621470-mRNA-1:cds;Parent=Msa0621470-mRNA-1
chr4_2	CDS	73542474	73542590	73542474	ID=Msa0621470-mRNA-1:cds;Parent=Msa0621470-mRNA-1
chr4_2	CDS	73542672	73542775	73542672	ID=Msa0621470-mRNA-1:cds;Parent=Msa0621470-mRNA-1
chr4_2	CDS	73542859	73542996	73542859	ID=Msa0621470-mRNA-1:cds;Parent=Msa0621470-mRNA-1
chr4_2	CDS	73543331	73543418	73543331	ID=Msa0621470-mRNA-1:cds;Parent=Msa0621470-mRNA-1
chr4_2	CDS	73543555	73543662	73543555	ID=Msa0621470-mRNA-1:cds;Parent=Msa0621470-mRNA-1

Gene Sequence

>Msa0621470

ATGTTTTCTTGTGTTCAAAATACACATTTTGAAGAACTCCTTCGTGTTGAAAATCGTCAAGAAGACATACTGAGTGACGATTCGTTACAAGACATTGTTGGTGAAGATTCATCTAGCGAAGACCAAATGAATCCGTCTAGCCATAAAAAATTTGAACAAATCACCGCGGATAAGTTTCAAGGCGAAACATCACAAAACAACGGAAAAGAAGTAGAACCATCATTTTCTAAATGGTTGGAGGTGGATGAACCTGTGGCTGTATGGTTCAAGTGGAAAGGGGAGTGGCATGCAGGCATCAAATGTGCAAGGGCTGATTGGCCCTTATCAATTGTGAAAGACAAACCAACTAATGATAAGCAGAACAAATGTTTAGTAATTTTTTCTCCAGAAACAGGGAATTATTCATGGGTTGAAGTGATTCTTGTTCAATCAATCGATGAGTTTCCAAAACCTATACCATATAAAACTTATCAAGAAGGATTGAAAATGGTACAAGACTTGGGGATTGCGCGATGGTTTATAATGCAAAAGCTCGCTGTCGAAATGCTCTACATGGTTGATCAACTTCATCTTAATGCTTTGATAGAAGATTATCGTAATGCGGTGGTTTGGAAGCAATTTGCTATGGAAGCTTCTCGTTGTCAACGTTATTCAGATCTTGGAAGAATGGTTCAGAGGCTGCAATATAGCATAATGCAACATTATATAAAAGACAATTGGAAACTGCATTCCTCTGAGTCTTGGGCTGAAAGATGCCAGAGTGCAAACAGTGCTGAAACAATAGAGCAGCTTCAGGAGGAATTGTTTGATTCTATTTTGTGGAATGATGTCCACACTCTCCGCAATGCACCGACACAACAAAAATTAGATTCTGAGTGGAAAACATGGAACCATGATGTAATGAAATGGTTTTCCACATTTATTTCCTTTTCTAGCAACAACAGCACACATCAACATTCTTTTAGTATTGATGGTTTGCACCAAGCAAGCCTTCAAGATGGCAGCAAAAGGCCTAAACTTAATGTTCGCCGTGCAAATACATTTTCTAGACATGAAGGAATTGTGGAGGTACCTGTGGAAACTGTGCTTCCAAGTCAATTGATCAGTCCATTGAGTAAAGTCACAGTTCATCCTGTAGATTCTGAGATGATGTTTAATAATGGAACAATATCAAGGTTTGCGAATGAAATGGATATTCAAATATCTGTAGAACCTGATACAAAGGATGATGTTGAGTATCGACGATGCCAAGCATACATTGAAGCCAAGGGAAGGCAATGTGTGAGAATGGCAATTGGAAATGATATATATTGTTGTGCGCATTTCTCGAGGAAAAAAGAAAAATGTGCTAAAGTTCTTACTCCAATGTGTTGTGGTACAACTGTTGCTGGTACCAAGTGTAAGCATCATTCCTTTCCCAGTTTTCCATTTTGCAAGAAACATATGCGCAATGTTGAGATGAACAAGAGCTCAAACGGCCATACATTGAAGAGGAAGGCTGAAGAAAGTTGTAGTGGTTCAAAGAGCCATATCAACAATGATTTGGTGTTAGTGCATCCAGAAAGTTCGTTGGAGATCGATCCAATGGCGTTCACTGGTGATGATGATTCTGATGATGATTCTTTCTCTGCAAAGAACATATTAGGTGAAACGCTCATGCTTTCCGGTAATGATTACAATGAAATAGAGACTCTTCACCAGACAGGTTCTCCTAACTATGATAATGATCGTGATAAATACTCATGTTTTGATAATGAGAATGCTAATAAGTGTAAGATCTGCTTTGAAGAATTTTTTAATGACCAAACACTTGGCGATCATTGGATGGAAAATCATATAAAGGAAGCCCGTTGGTTATTCAGAGGTTATGCTTGTGCCATTTGTTTTGATTCATTCTCTAACAAGAAACTACTGGAATCACACGTCCAGAATAGACACCATGCGTCGTTTAGTGAAAATTGCCTGCTTTTACTATGTATTCCTTGTGGTAGTCATTTTGGAAATATGGAGGAATTATGGTTGCATGTTAAGTCAGTTCACCCTGCCGAATTTAAGCTTGCAAAAGCTTCCAAGGAACTAACTTTGCCTACCAATGATGATCCTCCTATAACTATTGAGCAAGGAAATGAAGCTTCCTTGGACAATAATAATTTTGAGAACCCAAGTGGTTCGCGGAAGTTAAGTTGCAGGTTTTGTGGTTTGAAATTTGATTTACTGCCTGATCTTGGACGTCATCATCAAGCTACTCATATGGAACACGGTCTAGCTAGGAGGCGTTTGGCAAAGAGGGGAGTTCGTTATTATGCTCACAAACTAAAAACGGGCACACTTGGCCGTCCGAAATCCAAAGGAGGTTTTAAAGAAGCATCAAATAGGATCAAAAGAAGTGCTGGAGTTAATTTGAAGAGAAGAAATCAAGCAAGAAAGTTAAATGAGACGAGGGAAACATCCATGCAACAACCACATGTAAACGAGACAACATGTATTGTTGAATTGGAAGAATCTCAATGCTTAGAAGTTGCAAATATTTTGTTTTCTGATATTCATCAAACTCAACCGCAACCTAAAGATCTTGATATTTTATCAATCGCTTGCACTGCATGCTGCAAAGACAATCTTGAAGCCTCACTGAAGGAGAAATATGGATATTTTCCAGAAAAGATCTATTTGAAGGCAGCAAAACTTTGCAGTGAGAATGAAATTGTTGTGAATTGGCATCTAGATGGGTTCATTTGTCCTAGAGGATGTAATGCATTGAATGAACAAAACCGAAAGAAAATATATGCAAATGCATCAAATCCTGCAAGTATTGAAATGAAGCAAGATGAGTCTCAATCCATCATCAATTCAAAATATACAAGATTAGGATCGTCGCAGAAGGCTATAAAATTGTGCAATGACATAAGCTCTGGGATGGAATCAACTCCTGTGATTTGTGTAATGGATCTACAAATACTAGACTCTCTTTGTGAGCAAGAGCAATATTTAAATCTTCATAGACCTTGGGAGAGCTTTACTTATGTAACAAAACCAATGTTTGGTCGATTGCCAAATCATGACGATGAGAGTCTGCAATTGAAATGCCATTGCTCATCTTCTACCTGCTGTTGTGAAACTTGTGATCATGTATACCTTTTTGATAATGATTATGATACTGCAAAAGACATATTCGGGAAATCAATGCGCAACAAGTTTCCATATGATAACAATGGTCGAATCATATTGGAGGAAGGTTATATTGTGTATGAGTGCAACGAAGAGTGCAAATGTGATAAAACTTGTCCAAACAGAATATTGCAGAATGGAATTCGCGTTAAGTTGGAAGTTTTTAAAACAGAGAAAAAGGGATGGGGTGTAAGGGCTGGTGAGGCTATTTCGGGCGGCACATTTGTGTGTGAGTACATTGGAGAGGTTTTAGACGAGCAAGAGGCACGCAACAGACGTGAAAGATATGGAAAAGAACATTGCAGTTATTTCTTTGACGTTGATGCTCGTGTTAATGATATGAGTCGATTGATCGAAAGACAAGATCGATATGTCATTGATTCTACTAGATATGGCAATGTGTCAAGGTTCATCAATAACAGCTGTTCACCTAATCTTGTGAATTACCAAGTTCTTGTAGAGAGTATGGATTGTAAACGTTCGCATATCGGTCTTTACGCAAGTCAAGATATTGCTAAGGGTGAAGAATTAACCTACAATTATCACTATGAGCTTGTGGATGGAGAAGGATCTCCTTGTCTGTGTGGATCTTCGAAGTGCAGGAACCGCTTGTACTAG

Protein sequence

>Msa0621470

MFSCVQNTHFEELLRVENRQEDILSDDSLQDIVGEDSSSEDQMNPSSHKKFEQITADKFQGETSQNNGKEVEPSFSKWLEVDEPVAVWFKWKGEWHAGIKCARADWPLSIVKDKPTNDKQNKCLVIFSPETGNYSWVEVILVQSIDEFPKPIPYKTYQEGLKMVQDLGIARWFIMQKLAVEMLYMVDQLHLNALIEDYRNAVVWKQFAMEASRCQRYSDLGRMVQRLQYSIMQHYIKDNWKLHSSESWAERCQSANSAETIEQLQEELFDSILWNDVHTLRNAPTQQKLDSEWKTWNHDVMKWFSTFISFSSNNSTHQHSFSIDGLHQASLQDGSKRPKLNVRRANTFSRHEGIVEVPVETVLPSQLISPLSKVTVHPVDSEMMFNNGTISRFANEMDIQISVEPDTKDDVEYRRCQAYIEAKGRQCVRMAIGNDIYCCAHFSRKKEKCAKVLTPMCCGTTVAGTKCKHHSFPSFPFCKKHMRNVEMNKSSNGHTLKRKAEESCSGSKSHINNDLVLVHPESSLEIDPMAFTGDDDSDDDSFSAKNILGETLMLSGNDYNEIETLHQTGSPNYDNDRDKYSCFDNENANKCKICFEEFFNDQTLGDHWMENHIKEARWLFRGYACAICFDSFSNKKLLESHVQNRHHASFSENCLLLLCIPCGSHFGNMEELWLHVKSVHPAEFKLAKASKELTLPTNDDPPITIEQGNEASLDNNNFENPSGSRKLSCRFCGLKFDLLPDLGRHHQATHMEHGLARRRLAKRGVRYYAHKLKTGTLGRPKSKGGFKEASNRIKRSAGVNLKRRNQARKLNETRETSMQQPHVNETTCIVELEESQCLEVANILFSDIHQTQPQPKDLDILSIACTACCKDNLEASLKEKYGYFPEKIYLKAAKLCSENEIVVNWHLDGFICPRGCNALNEQNRKKIYANASNPASIEMKQDESQSIINSKYTRLGSSQKAIKLCNDISSGMESTPVICVMDLQILDSLCEQEQYLNLHRPWESFTYVTKPMFGRLPNHDDESLQLKCHCSSSTCCCETCDHVYLFDNDYDTAKDIFGKSMRNKFPYDNNGRIILEEGYIVYECNEECKCDKTCPNRILQNGIRVKLEVFKTEKKGWGVRAGEAISGGTFVCEYIGEVLDEQEARNRRERYGKEHCSYFFDVDARVNDMSRLIERQDRYVIDSTRYGNVSRFINNSCSPNLVNYQVLVESMDCKRSHIGLYASQDIAKGEELTYNYHYELVDGEGSPCLCGSSKCRNRLY*