Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622300 | XP_013452551.1 | 96.804 | 438 | 5 | 1 | 1 | 429 | 1 | 438 | 0.0 | 865 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622300 | sp|Q9FNZ2|C3H48_ARATH | 65.105 | 427 | 138 | 4 | 1 | 421 | 3 | 424 | 0.0 | 596 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0622300 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0622300 | Msa0928800 | 0.858048 | 1.076334e-62 | -8.615850e-47 |
| Msa0622300 | Msa0989950 | 0.934905 | 1.954507e-96 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622300 | MtrunA17_Chr6g0474101 | 96.804 | 438 | 5 | 1 | 1 | 429 | 1 | 438 | 0.0 | 865 |
| Msa0622300 | MtrunA17_Chr8g0348461 | 52.484 | 322 | 149 | 3 | 104 | 421 | 194 | 515 | 2.46e-126 | 375 |
| Msa0622300 | MtrunA17_Chr8g0350811 | 50.000 | 320 | 158 | 2 | 104 | 421 | 581 | 900 | 8.59e-118 | 365 |
| Msa0622300 | MtrunA17_Chr8g0350811 | 44.286 | 210 | 108 | 4 | 106 | 308 | 233 | 440 | 1.06e-48 | 178 |
| Msa0622300 | MtrunA17_Chr2g0331341 | 28.319 | 226 | 133 | 7 | 140 | 336 | 3 | 228 | 2.41e-16 | 78.6 |
| Msa0622300 | MtrunA17_Chr3g0140101 | 29.302 | 215 | 127 | 9 | 140 | 329 | 193 | 407 | 6.78e-13 | 70.1 |
| Msa0622300 | MtrunA17_Chr8g0381281 | 26.316 | 228 | 117 | 6 | 120 | 329 | 232 | 426 | 2.67e-12 | 68.2 |
| Msa0622300 | MtrunA17_Chr1g0154301 | 24.746 | 295 | 189 | 12 | 134 | 417 | 105 | 377 | 3.03e-12 | 68.2 |
| Msa0622300 | MtrunA17_Chr1g0154301 | 28.205 | 234 | 140 | 8 | 140 | 348 | 218 | 448 | 3.59e-12 | 68.2 |
| Msa0622300 | MtrunA17_Chr4g0034121 | 28.125 | 224 | 129 | 9 | 140 | 333 | 245 | 466 | 1.21e-11 | 66.6 |
| Msa0622300 | MtrunA17_Chr2g0284241 | 25.514 | 243 | 150 | 10 | 138 | 357 | 90 | 324 | 2.07e-11 | 65.1 |
| Msa0622300 | MtrunA17_Chr4g0059031 | 25.177 | 282 | 175 | 12 | 137 | 392 | 398 | 669 | 4.74e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622300 | AT4G25440.2 | 65.105 | 427 | 138 | 4 | 1 | 421 | 3 | 424 | 0.0 | 596 |
| Msa0622300 | AT4G25440.3 | 65.105 | 427 | 138 | 4 | 1 | 421 | 3 | 424 | 0.0 | 596 |
| Msa0622300 | AT4G25440.1 | 65.105 | 427 | 138 | 4 | 1 | 421 | 3 | 424 | 0.0 | 596 |
| Msa0622300 | AT5G51980.1 | 62.955 | 440 | 143 | 6 | 1 | 425 | 1 | 435 | 0.0 | 583 |
| Msa0622300 | AT5G51980.2 | 62.955 | 440 | 143 | 6 | 1 | 425 | 1 | 435 | 0.0 | 583 |
| Msa0622300 | AT5G40880.2 | 50.943 | 318 | 154 | 2 | 102 | 417 | 119 | 436 | 2.98e-117 | 350 |
| Msa0622300 | AT5G40880.1 | 50.943 | 318 | 154 | 2 | 102 | 417 | 148 | 465 | 6.14e-117 | 350 |
| Msa0622300 | AT5G49200.1 | 49.530 | 319 | 156 | 3 | 104 | 417 | 94 | 412 | 2.07e-111 | 334 |
| Msa0622300 | AT1G24530.1 | 27.143 | 210 | 131 | 7 | 140 | 329 | 194 | 401 | 1.07e-13 | 72.8 |
| Msa0622300 | AT1G24130.1 | 26.606 | 218 | 132 | 7 | 140 | 329 | 191 | 408 | 6.56e-13 | 70.5 |
| Msa0622300 | AT3G50390.1 | 22.662 | 278 | 175 | 8 | 177 | 416 | 93 | 368 | 7.55e-13 | 70.5 |
| Msa0622300 | AT1G47610.1 | 27.103 | 214 | 131 | 6 | 140 | 329 | 134 | 346 | 1.33e-11 | 66.2 |
| Msa0622300 | AT3G18140.1 | 25.941 | 239 | 150 | 11 | 138 | 357 | 75 | 305 | 6.66e-11 | 63.5 |
| Msa0622300 | AT2G26060.1 | 25.076 | 327 | 158 | 16 | 138 | 422 | 71 | 352 | 6.71e-11 | 63.9 |
| Msa0622300 | AT2G26490.1 | 29.464 | 224 | 122 | 10 | 140 | 334 | 205 | 421 | 7.58e-11 | 64.3 |
Find 140 sgRNAs with CRISPR-Local
Find 309 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAAAGAGTTTGTACTTAT+TGG | 0.102120 | 4_2:+74719583 | Msa0622300:CDS |
| TCTTCTTACCTTAACAAAAT+TGG | 0.119333 | 4_2:-74720895 | None:intergenic |
| CCCACTTTAGTGCACGTTAT+TGG | 0.220045 | 4_2:-74723326 | None:intergenic |
| GAGCCAGCTGCATCACTTAA+AGG | 0.244802 | 4_2:+74721533 | Msa0622300:CDS |
| TGGTGATGTCTGTTCTTTGC+TGG | 0.250109 | 4_2:+74721785 | Msa0622300:CDS |
| AGTGAATTGCCTACTTCTAA+TGG | 0.301502 | 4_2:+74719391 | Msa0622300:CDS |
| CTTGCAGGATGGAGCTATAT+TGG | 0.302277 | 4_2:+74721478 | Msa0622300:intron |
| CGGGGTGGTGTAGGTGGTGG+TGG | 0.306577 | 4_2:+74719537 | Msa0622300:CDS |
| ATATAACATCAAATAATTTC+AGG | 0.312844 | 4_2:+74723788 | Msa0622300:three_prime_UTR |
| CTTCTTACCTTAACAAAATT+GGG | 0.313002 | 4_2:-74720894 | None:intergenic |
| TTATTGGATGTGGCCGGTTC+AGG | 0.316183 | 4_2:-74723310 | None:intergenic |
| GGAGCTAATAGACTTTATTC+TGG | 0.326721 | 4_2:+74721587 | Msa0622300:CDS |
| AGAGGTGGTGGACGTGGTCG+TGG | 0.334355 | 4_2:+74719507 | Msa0622300:intron |
| GAATATGTAATCTATGTTTA+CGG | 0.345237 | 4_2:+74723604 | Msa0622300:three_prime_UTR |
| TCCAATAACGTGCACTAAAG+TGG | 0.346128 | 4_2:+74723325 | Msa0622300:exon |
| TGTCTAATGAACAAGATATA+AGG | 0.355225 | 4_2:-74721816 | None:intergenic |
| GCTGTACGCTGCAGAGGATC+CGG | 0.362045 | 4_2:+74723567 | Msa0622300:three_prime_UTR |
| GTTGCAAGAGCATAGAAGTA+TGG | 0.364087 | 4_2:-74722594 | None:intergenic |
| CACTCTTGGAATGTTGGTGA+TGG | 0.368628 | 4_2:+74719648 | Msa0622300:CDS |
| TGGTGGACGTGGTCGTGGTG+GGG | 0.375308 | 4_2:+74719512 | Msa0622300:CDS |
| TCAGCATAAGCCCGTTTAGA+AGG | 0.378915 | 4_2:-74719424 | None:intergenic |
| GGTGGTGGACGTGGTCGTGG+TGG | 0.380738 | 4_2:+74719510 | Msa0622300:intron |
| GGTTCGGATAAGCTTTATAC+TGG | 0.382445 | 4_2:+74720582 | Msa0622300:CDS |
| GGTGTAAGTTTCTTCACTCT+TGG | 0.386356 | 4_2:+74719634 | Msa0622300:CDS |
| CCGGGGAGAGGTGGTGGACG+TGG | 0.387164 | 4_2:+74719501 | Msa0622300:intron |
| TAGACTTTATTCTGGTTCAA+TGG | 0.390656 | 4_2:+74721595 | Msa0622300:CDS |
| GCCAAGTGAGAGTGTGGAAT+TGG | 0.392307 | 4_2:+74723284 | Msa0622300:CDS |
| ATGATGAGACTGTAAGGGTT+TGG | 0.396519 | 4_2:+74720610 | Msa0622300:CDS |
| GGTGGACGTGGTCGTGGTGG+GGG | 0.397475 | 4_2:+74719513 | Msa0622300:CDS |
| TAAATCTCGGCCGCAGAACT+TGG | 0.399435 | 4_2:-74723535 | None:intergenic |
| GGTGGTGTAGGTGGTGGTGG+TGG | 0.401605 | 4_2:+74719540 | Msa0622300:CDS |
| GTGGTGGACGTGGTCGTGGT+GGG | 0.401884 | 4_2:+74719511 | Msa0622300:CDS |
| TCTGCAGCCATTCATGCATT+AGG | 0.407699 | 4_2:+74723506 | Msa0622300:three_prime_UTR |
| AGGGTTTGGGACTGCCAGTC+TGG | 0.408736 | 4_2:+74720624 | Msa0622300:CDS |
| TGATGAGACTGTAAGGGTTT+GGG | 0.409539 | 4_2:+74720611 | Msa0622300:CDS |
| GGACGGGGTGGTGTAGGTGG+TGG | 0.411022 | 4_2:+74719534 | Msa0622300:CDS |
| TGCTACGGAAAGTGGAAATC+TGG | 0.412766 | 4_2:+74721937 | Msa0622300:CDS |
| GTAAACACTGCAAGGTTTCA+AGG | 0.414343 | 4_2:-74721738 | None:intergenic |
| ATTAATGATATGCTCTTTGC+TGG | 0.418363 | 4_2:+74721127 | Msa0622300:CDS |
| ATTCAAGGGAATTGTAGTTA+TGG | 0.419571 | 4_2:+74719606 | Msa0622300:CDS |
| AATATGTAATCTATGTTTAC+GGG | 0.421532 | 4_2:+74723605 | Msa0622300:three_prime_UTR |
| TCTTTGTTGACTCAGCTTGA+AGG | 0.427109 | 4_2:+74719675 | Msa0622300:CDS |
| GGAATTGTAGTTATGGAGAT+AGG | 0.434741 | 4_2:+74719613 | Msa0622300:CDS |
| GGTGATGTCTGTTCTTTGCT+GGG | 0.435801 | 4_2:+74721786 | Msa0622300:CDS |
| GGCACTAAGCTTGCTTTAGT+AGG | 0.437592 | 4_2:+74723676 | Msa0622300:three_prime_UTR |
| GAAGTAATGATGAGACTGTA+AGG | 0.438934 | 4_2:+74720604 | Msa0622300:CDS |
| TTCTTCACTGGTGATGGAAC+CGG | 0.439518 | 4_2:+74723262 | Msa0622300:CDS |
| TTTCTTCACTCTTGGAATGT+TGG | 0.440764 | 4_2:+74719642 | Msa0622300:CDS |
| TTGGGACTGCCAGTCTGGAC+AGG | 0.443226 | 4_2:+74720629 | Msa0622300:CDS |
| GTGAATTGCCTACTTCTAAT+GGG | 0.444534 | 4_2:+74719392 | Msa0622300:CDS |
| AGGTAAGATATTCAACAAAC+AGG | 0.445583 | 4_2:+74723204 | Msa0622300:CDS |
| AATTGCTATGCCCTCTGGTT+CGG | 0.446239 | 4_2:+74720566 | Msa0622300:CDS |
| GGAATGGTGCTCCTTCTAAA+CGG | 0.446924 | 4_2:+74719413 | Msa0622300:CDS |
| GGCAATTCACTATGCAGAAA+AGG | 0.455554 | 4_2:-74719379 | None:intergenic |
| GTTTGTACTTATTGGATTCA+AGG | 0.456346 | 4_2:+74719591 | Msa0622300:CDS |
| ATAAATGCTAGGAGGGATCC+TGG | 0.459670 | 4_2:+74723462 | Msa0622300:three_prime_UTR |
| TTCATTAGACAAAACAGTAA+AGG | 0.464680 | 4_2:+74721828 | Msa0622300:CDS |
| CGTGTTTACAATCGTCTTGG+TGG | 0.467498 | 4_2:+74719280 | Msa0622300:CDS |
| TCAATGGAGATAAGTCTAGA+TGG | 0.468495 | 4_2:+74721073 | Msa0622300:CDS |
| TTAGTGCACGTTATTGGATG+TGG | 0.476010 | 4_2:-74723320 | None:intergenic |
| TTGAATGAACAGGTTGTAAG+TGG | 0.476227 | 4_2:+74720543 | Msa0622300:intron |
| GAATGGTGCTCCTTCTAAAC+GGG | 0.477698 | 4_2:+74719414 | Msa0622300:CDS |
| TGTATAGCTGTGATCAATCT+TGG | 0.477996 | 4_2:+74720819 | Msa0622300:CDS |
| ACTCTTGGAATGTTGGTGAT+GGG | 0.480654 | 4_2:+74719649 | Msa0622300:CDS |
| AGTGGAATTGCTATGCCCTC+TGG | 0.484501 | 4_2:+74720561 | Msa0622300:CDS |
| CGGCCGAGATTTAACTGAGC+AGG | 0.488453 | 4_2:+74723545 | Msa0622300:three_prime_UTR |
| TTTGTACTTATTGGATTCAA+GGG | 0.491174 | 4_2:+74719592 | Msa0622300:CDS |
| AGCATATTCTTCACTGGTGA+TGG | 0.496351 | 4_2:+74723256 | Msa0622300:CDS |
| GGTGTTGTTTCGTTAGTTGT+TGG | 0.496526 | 4_2:+74721566 | Msa0622300:CDS |
| CGAGCAATTCAGACTGGTCC+TGG | 0.502735 | 4_2:+74723232 | Msa0622300:CDS |
| TGGACGGCTGAAGAGAATCC+AGG | 0.510666 | 4_2:-74723480 | None:intergenic |
| ATTCCACACTCTCACTTGGC+CGG | 0.510834 | 4_2:-74723281 | None:intergenic |
| CCTGGTAGCATATTCTTCAC+TGG | 0.512028 | 4_2:+74723250 | Msa0622300:CDS |
| GTGTGGTATGCTACGGAAAG+TGG | 0.514044 | 4_2:+74721929 | Msa0622300:CDS |
| CTGTACGCTGCAGAGGATCC+GGG | 0.518751 | 4_2:+74723568 | Msa0622300:three_prime_UTR |
| GATTGCACCTAATGCATGAA+TGG | 0.520684 | 4_2:-74723513 | None:intergenic |
| GAGGAGAATAAATGCTAGGA+GGG | 0.523492 | 4_2:+74723455 | Msa0622300:three_prime_UTR |
| CTAAAGCAAGCTTAGTGCCT+GGG | 0.527920 | 4_2:-74723672 | None:intergenic |
| GTATGATCAGTGAAGGTCCC+TGG | 0.528209 | 4_2:+74720856 | Msa0622300:CDS |
| TCCAATTCCACACTCTCACT+TGG | 0.529171 | 4_2:-74723285 | None:intergenic |
| AAGCGTGTTTACAATCGTCT+TGG | 0.534374 | 4_2:+74719277 | Msa0622300:CDS |
| ATATCTATATACGCATGAAA+AGG | 0.534720 | 4_2:-74723765 | None:intergenic |
| ACTAAAGCAAGCTTAGTGCC+TGG | 0.541438 | 4_2:-74723673 | None:intergenic |
| AGTGCATAAACTTGTCCGAC+AGG | 0.541835 | 4_2:-74721097 | None:intergenic |
| TTGGAACACGCAAAATTCAA+TGG | 0.543770 | 4_2:+74721057 | Msa0622300:CDS |
| TTTGTTTCTATGGATTTCGA+CGG | 0.545744 | 4_2:+74719247 | None:intergenic |
| GTGGAATTGGATACCTGAAC+CGG | 0.547100 | 4_2:+74723297 | Msa0622300:CDS |
| TGCACGTTATTGGATGTGGC+CGG | 0.547273 | 4_2:-74723316 | None:intergenic |
| GCATGAATGGCTGCAGAGGA+TGG | 0.548744 | 4_2:-74723500 | None:intergenic |
| ATTCTTTGAATCACCACCGT+TGG | 0.549048 | 4_2:-74719305 | None:intergenic |
| TCAGCTTGAAGGACATAAGA+AGG | 0.550026 | 4_2:+74719686 | Msa0622300:CDS |
| TTGTAACAACCTGTCCAGAC+TGG | 0.550382 | 4_2:-74720638 | None:intergenic |
| ACTGACAGAGCACACGGCTG+TGG | 0.553338 | 4_2:+74721765 | Msa0622300:CDS |
| AATCGTCTTGGTGGGTCCAA+CGG | 0.554468 | 4_2:+74719289 | Msa0622300:CDS |
| TATGCTCTTTGCTGGTACGC+AGG | 0.562187 | 4_2:+74721135 | Msa0622300:CDS |
| GGATCCGGGCCAGAACGAAA+AGG | 0.563439 | 4_2:+74723582 | Msa0622300:three_prime_UTR |
| TTGCAAGAGCATAGAAGTAT+GGG | 0.564028 | 4_2:-74722593 | None:intergenic |
| CCAATAACGTGCACTAAAGT+GGG | 0.567143 | 4_2:+74723326 | Msa0622300:exon |
| TTGTTCAGATTTGCAGAGAG+AGG | 0.567797 | 4_2:+74723184 | Msa0622300:intron |
| GCACCATTCCCATTAGAAGT+AGG | 0.568465 | 4_2:-74719400 | None:intergenic |
| GTGTTTACAATCGTCTTGGT+GGG | 0.570120 | 4_2:+74719281 | Msa0622300:CDS |
| GTTTCTATGGATTTCGACGG+TGG | 0.572025 | 4_2:+74719250 | None:intergenic |
| AACTAACGAAACAACACCAC+GGG | 0.575189 | 4_2:-74721561 | None:intergenic |
| ATCAATCTTGGCGGTGAAGT+AGG | 0.580144 | 4_2:+74720831 | Msa0622300:CDS |
| TATGCAGGTGTGGTATGCTA+CGG | 0.582090 | 4_2:+74721922 | Msa0622300:intron |
| ATAAAGCTTATCCGAACCAG+AGG | 0.585965 | 4_2:-74720577 | None:intergenic |
| CAGAGAGGAGAATAAATGCT+AGG | 0.587050 | 4_2:+74723451 | Msa0622300:intron |
| GTGCATCATGCATCCCACAC+AGG | 0.589231 | 4_2:-74722562 | None:intergenic |
| TTGCCTACTTCTAATGGGAA+TGG | 0.590538 | 4_2:+74719397 | Msa0622300:CDS |
| CAGTGTCTGTAAACACTGCA+AGG | 0.596655 | 4_2:-74721746 | None:intergenic |
| TGCAGCTGGCTCGAAACAGT+TGG | 0.597581 | 4_2:-74721522 | None:intergenic |
| CAGCCTGCTCAGTTAAATCT+CGG | 0.598274 | 4_2:-74723548 | None:intergenic |
| TGACCTTTAAGTGATGCAGC+TGG | 0.606030 | 4_2:-74721536 | None:intergenic |
| TGCATCATGCATCCCACACA+GGG | 0.610323 | 4_2:-74722561 | None:intergenic |
| GAGCAGGCTGTACGCTGCAG+AGG | 0.610543 | 4_2:+74723561 | Msa0622300:three_prime_UTR |
| GAACCGGCCAAGTGAGAGTG+TGG | 0.613681 | 4_2:+74723278 | Msa0622300:CDS |
| TAGGGTATAATCACCCTGTG+TGG | 0.617156 | 4_2:+74722548 | Msa0622300:intron |
| CCAGTGAAGAATATGCTACC+AGG | 0.618179 | 4_2:-74723250 | None:intergenic |
| AGGATGGAGCTATATTGGTA+TGG | 0.618970 | 4_2:+74721483 | Msa0622300:intron |
| TCACTATGCAGAAAAGGACA+TGG | 0.619738 | 4_2:-74719373 | None:intergenic |
| CGTCTTGGTGGGTCCAACGG+TGG | 0.620014 | 4_2:+74719292 | Msa0622300:CDS |
| GAATGGCTGCAGAGGATGGA+CGG | 0.625373 | 4_2:-74723496 | None:intergenic |
| AGAGGAGAATAAATGCTAGG+AGG | 0.628296 | 4_2:+74723454 | Msa0622300:three_prime_UTR |
| ATAAGTCTAGATGGCCCTGT+CGG | 0.630869 | 4_2:+74721082 | Msa0622300:CDS |
| GTAGGTTGTATGATCAGTGA+AGG | 0.632803 | 4_2:+74720849 | Msa0622300:CDS |
| AGGGTATAATCACCCTGTGT+GGG | 0.634224 | 4_2:+74722549 | Msa0622300:intron |
| AAGTAATGATGAGACTGTAA+GGG | 0.635516 | 4_2:+74720605 | Msa0622300:CDS |
| TAATGCATGAATGGCTGCAG+AGG | 0.635890 | 4_2:-74723504 | None:intergenic |
| GAGGTGCGAGCAATTCAGAC+TGG | 0.636091 | 4_2:+74723226 | Msa0622300:CDS |
| CTTACGATGGCAGATCATAG+AGG | 0.639029 | 4_2:-74722631 | None:intergenic |
| GTGCATAAACTTGTCCGACA+GGG | 0.646937 | 4_2:-74721096 | None:intergenic |
| ATAGCTGTGATCAATCTTGG+CGG | 0.647484 | 4_2:+74720822 | Msa0622300:CDS |
| ACAGACACTGACAGAGCACA+CGG | 0.654604 | 4_2:+74721759 | Msa0622300:CDS |
| TAAGATATTCAACAAACAGG+AGG | 0.665359 | 4_2:+74723207 | Msa0622300:CDS |
| TCACTTAAAGGTCATACCCG+TGG | 0.682929 | 4_2:+74721545 | Msa0622300:CDS |
| TAAAGCTTATCCGAACCAGA+GGG | 0.687572 | 4_2:-74720576 | None:intergenic |
| ATAACGTGCACTAAAGTGGG+AGG | 0.693100 | 4_2:+74723329 | Msa0622300:exon |
| TAGGTGCAATCCAAGTTCTG+CGG | 0.693548 | 4_2:+74723525 | Msa0622300:three_prime_UTR |
| TGTGGGATGCATGATGCACA+AGG | 0.695668 | 4_2:+74722566 | Msa0622300:CDS |
| CAACTAACGAAACAACACCA+CGG | 0.703335 | 4_2:-74721562 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAGTTATTAATATACTA+TGG | + | chr4_2:74720194-74720213 | Msa0622300:intron | 10.0% |
| !!! | CAAGATTATTATTTTTAAAT+AGG | + | chr4_2:74722231-74722250 | Msa0622300:intron | 10.0% |
| !! | CATGTTTATAATTTGAATTA+TGG | + | chr4_2:74719840-74719859 | Msa0622300:intron | 15.0% |
| !! | TAATAATTCTATAACATATC+TGG | - | chr4_2:74719883-74719902 | None:intergenic | 15.0% |
| !!! | AATATTCTTTTTAAGCAAAA+TGG | + | chr4_2:74721663-74721682 | Msa0622300:intron | 15.0% |
| !!! | TTTAATGGAAATTTTATATG+TGG | - | chr4_2:74722099-74722118 | None:intergenic | 15.0% |
| !!! | GTATTGTCTTTTTTTTAATA+TGG | + | chr4_2:74722356-74722375 | Msa0622300:intron | 15.0% |
| !! | TGTAAAAATAAAAATCTTTC+TGG | - | chr4_2:74722411-74722430 | None:intergenic | 15.0% |
| !!! | AAAAACTTAGTTGATAAAAT+AGG | - | chr4_2:74723092-74723111 | None:intergenic | 15.0% |
| !!! | ATTTGAATTATGGTTTTGAA+TGG | + | chr4_2:74719850-74719869 | Msa0622300:intron | 20.0% |
| !!! | AATTTTGGTTATGTTTTGAA+TGG | + | chr4_2:74720047-74720066 | Msa0622300:intron | 20.0% |
| !!! | ATTTTGGTTATGTTTTGAAT+GGG | + | chr4_2:74720048-74720067 | Msa0622300:intron | 20.0% |
| !!! | TAAGCTTTTTTTATAGCAAA+AGG | + | chr4_2:74720285-74720304 | Msa0622300:intron | 20.0% |
| !! | TTGTTACAATTTCTTTCTAT+TGG | + | chr4_2:74720652-74720671 | Msa0622300:intron | 20.0% |
| !! | CTTCAACTCTAATTTATTTA+AGG | + | chr4_2:74720952-74720971 | Msa0622300:intron | 20.0% |
| !! | ATAAAAAAATACGTTGACAA+TGG | - | chr4_2:74721175-74721194 | None:intergenic | 20.0% |
| !! | TTTATATACCTATTTGAATG+CGG | + | chr4_2:74721214-74721233 | Msa0622300:intron | 20.0% |
| !!! | TTTGTTTTTTCATTATTTGC+AGG | + | chr4_2:74721851-74721870 | Msa0622300:intron | 20.0% |
| !! | AATCATAACAATCAAAACAA+GGG | - | chr4_2:74721902-74721921 | None:intergenic | 20.0% |
| !! | AAATCATAACAATCAAAACA+AGG | - | chr4_2:74721903-74721922 | None:intergenic | 20.0% |
| !!! | AATTTTCAAACATCTCATAA+GGG | - | chr4_2:74722295-74722314 | None:intergenic | 20.0% |
| !!! | AAATTTTCAAACATCTCATA+AGG | - | chr4_2:74722296-74722315 | None:intergenic | 20.0% |
| !! | TTTGTATACAAATCAAATCT+TGG | + | chr4_2:74722720-74722739 | Msa0622300:intron | 20.0% |
| !! | AAAGTTATTCATGGAAAAAA+TGG | + | chr4_2:74722753-74722772 | Msa0622300:intron | 20.0% |
| !! | AAACTGCTAAAACAATTAAT+TGG | - | chr4_2:74723370-74723389 | None:intergenic | 20.0% |
| !! | TTGCAGAAAAAATTACAAAA+AGG | - | chr4_2:74723402-74723421 | None:intergenic | 20.0% |
| !! | GAATATGTAATCTATGTTTA+CGG | + | chr4_2:74723604-74723623 | Msa0622300:three_prime_UTR | 20.0% |
| !! | AATATGTAATCTATGTTTAC+GGG | + | chr4_2:74723605-74723624 | Msa0622300:three_prime_UTR | 20.0% |
| ! | TTGAAAGAGTTTGTACTTAT+TGG | + | chr4_2:74719583-74719602 | Msa0622300:CDS | 25.0% |
| ! | TTTGTACTTATTGGATTCAA+GGG | + | chr4_2:74719592-74719611 | Msa0622300:CDS | 25.0% |
| !!! | AATCTTGATAATGAAACCTA+TGG | + | chr4_2:74719766-74719785 | Msa0622300:intron | 25.0% |
| !!! | TTTTGGTTATGTTTTGAATG+GGG | + | chr4_2:74720049-74720068 | Msa0622300:intron | 25.0% |
| ! | AGGCAAATGTTAATAAGTAA+TGG | + | chr4_2:74720118-74720137 | Msa0622300:intron | 25.0% |
| ! | ATGTTAATAAGTAATGGCAT+TGG | + | chr4_2:74720124-74720143 | Msa0622300:intron | 25.0% |
| ! | ATAAGTTGTTTATCCAAACA+GGG | - | chr4_2:74720220-74720239 | None:intergenic | 25.0% |
| ! | AATAAGTTGTTTATCCAAAC+AGG | - | chr4_2:74720221-74720240 | None:intergenic | 25.0% |
| ! | GAATAGCTAATAATGAACAA+TGG | + | chr4_2:74720382-74720401 | Msa0622300:intron | 25.0% |
| ! | AATTATTTGAGCTTATCTAC+TGG | - | chr4_2:74720456-74720475 | None:intergenic | 25.0% |
| ! | GAAATAGAAAACAGATAGAA+AGG | - | chr4_2:74720701-74720720 | None:intergenic | 25.0% |
| !!! | AACACAACAATTTAGTTCTT+TGG | - | chr4_2:74720783-74720802 | None:intergenic | 25.0% |
| ! | CTTCTTACCTTAACAAAATT+GGG | - | chr4_2:74720897-74720916 | None:intergenic | 25.0% |
| ! | TCTTCTTACCTTAACAAAAT+TGG | - | chr4_2:74720898-74720917 | None:intergenic | 25.0% |
| ! | TATATTTCCTAAGATCCTAA+AGG | - | chr4_2:74721373-74721392 | None:intergenic | 25.0% |
| !!! | TTTTTAAGCAAAATGGAACT+AGG | + | chr4_2:74721670-74721689 | Msa0622300:intron | 25.0% |
| ! | TGTCTAATGAACAAGATATA+AGG | - | chr4_2:74721819-74721838 | None:intergenic | 25.0% |
| ! | TTCATTAGACAAAACAGTAA+AGG | + | chr4_2:74721828-74721847 | Msa0622300:CDS | 25.0% |
| ! | ATCATAACAATCAAAACAAG+GGG | - | chr4_2:74721901-74721920 | None:intergenic | 25.0% |
| ! | TTGATTGTTATGATTTATGC+AGG | + | chr4_2:74721907-74721926 | Msa0622300:intron | 25.0% |
| !! | AATTTATTTATGTTTTCCCC+TGG | + | chr4_2:74721998-74722017 | Msa0622300:intron | 25.0% |
| ! | GAAATACCAACATTTCTAAT+GGG | - | chr4_2:74722056-74722075 | None:intergenic | 25.0% |
| ! | TGAAATACCAACATTTCTAA+TGG | - | chr4_2:74722057-74722076 | None:intergenic | 25.0% |
| !! | TGTTGGTATTTCATGATTTT+AGG | + | chr4_2:74722064-74722083 | Msa0622300:intron | 25.0% |
| !! | GTTGGTATTTCATGATTTTA+GGG | + | chr4_2:74722065-74722084 | Msa0622300:intron | 25.0% |
| !! | TTGGTTCTTAGATCATTTAA+TGG | - | chr4_2:74722114-74722133 | None:intergenic | 25.0% |
| !! | ATTTTCAAACATCTCATAAG+GGG | - | chr4_2:74722294-74722313 | None:intergenic | 25.0% |
| ! | TTCTACACAAAATGTTGTAT+TGG | + | chr4_2:74722468-74722487 | Msa0622300:intron | 25.0% |
| !!! | TGTATTGGTATTTGTTATAG+TGG | + | chr4_2:74722483-74722502 | Msa0622300:intron | 25.0% |
| ! | TTACTGTACAAAGTTATTCA+TGG | + | chr4_2:74722744-74722763 | Msa0622300:intron | 25.0% |
| ! | TGTTCTTTAATAGAAGCAAT+AGG | + | chr4_2:74722951-74722970 | Msa0622300:intron | 25.0% |
| ! | GTTCTTTAATAGAAGCAATA+GGG | + | chr4_2:74722952-74722971 | Msa0622300:intron | 25.0% |
| !! | TGAAGTCATTCTTAACTTTT+TGG | + | chr4_2:74723153-74723172 | Msa0622300:intron | 25.0% |
| !!! | TTGTAATTTTTTCTGCAAGA+AGG | + | chr4_2:74723404-74723423 | Msa0622300:intron | 25.0% |
| !!! | TGTAATTTTTTCTGCAAGAA+GGG | + | chr4_2:74723405-74723424 | Msa0622300:intron | 25.0% |
| ! | ATATCTATATACGCATGAAA+AGG | - | chr4_2:74723768-74723787 | None:intergenic | 25.0% |
| !! | ATCAGAAAGTGTGTTTTCAA+TGG | + | chr4_2:74719326-74719345 | Msa0622300:CDS | 30.0% |
| !! | ATTCGAGTTTTTCTGGTAAT+CGG | + | chr4_2:74719449-74719468 | Msa0622300:CDS | 30.0% |
| GTTTGTACTTATTGGATTCA+AGG | + | chr4_2:74719591-74719610 | Msa0622300:CDS | 30.0% | |
| ATTCAAGGGAATTGTAGTTA+TGG | + | chr4_2:74719606-74719625 | Msa0622300:CDS | 30.0% | |
| ATACTCGATGATAACAATGT+TGG | - | chr4_2:74719795-74719814 | None:intergenic | 30.0% | |
| !!! | TGAATTATGGTTTTGAATGG+TGG | + | chr4_2:74719853-74719872 | Msa0622300:intron | 30.0% |
| GATAAACAAGTTGCATTCAT+CGG | - | chr4_2:74719945-74719964 | None:intergenic | 30.0% | |
| !! | TTTGGTTATGTTTTGAATGG+GGG | + | chr4_2:74720050-74720069 | Msa0622300:intron | 30.0% |
| !!! | TTTTTTGGGTAATGAGTTGA+TGG | + | chr4_2:74720503-74720522 | Msa0622300:intron | 30.0% |
| !!! | TTTTTGGGTAATGAGTTGAT+GGG | + | chr4_2:74720504-74720523 | Msa0622300:intron | 30.0% |
| AAGTAATGATGAGACTGTAA+GGG | + | chr4_2:74720605-74720624 | Msa0622300:CDS | 30.0% | |
| ! | TTCTTTGGCTTAATCTCAAA+AGG | - | chr4_2:74720768-74720787 | None:intergenic | 30.0% |
| ATTAATGATATGCTCTTTGC+TGG | + | chr4_2:74721127-74721146 | Msa0622300:CDS | 30.0% | |
| CATTATTTCCGCATTCAAAT+AGG | - | chr4_2:74721225-74721244 | None:intergenic | 30.0% | |
| TGTCAAAAATGTTCACATAG+TGG | + | chr4_2:74721255-74721274 | Msa0622300:intron | 30.0% | |
| AAACTATGGTTTATGCCTTT+AGG | + | chr4_2:74721355-74721374 | Msa0622300:intron | 30.0% | |
| !! | TAGACTTTATTCTGGTTCAA+TGG | + | chr4_2:74721595-74721614 | Msa0622300:CDS | 30.0% |
| TCATAACAATCAAAACAAGG+GGG | - | chr4_2:74721900-74721919 | None:intergenic | 30.0% | |
| ! | GAATGTGTTGATCTTATGTA+TGG | + | chr4_2:74722020-74722039 | Msa0622300:intron | 30.0% |
| TGATATGAGTTCAGTTCATT+AGG | - | chr4_2:74722137-74722156 | None:intergenic | 30.0% | |
| TCATTGAAAATGATCATGCA+GGG | - | chr4_2:74722336-74722355 | None:intergenic | 30.0% | |
| TATGTAACAAGAGCAAGAAT+GGG | - | chr4_2:74722667-74722686 | None:intergenic | 30.0% | |
| ATATGTAACAAGAGCAAGAA+TGG | - | chr4_2:74722668-74722687 | None:intergenic | 30.0% | |
| CTTGCTCTTGTTACATATTA+TGG | + | chr4_2:74722670-74722689 | Msa0622300:intron | 30.0% | |
| TGAAGAACTGCAGATTAAAA+TGG | - | chr4_2:74722799-74722818 | None:intergenic | 30.0% | |
| TATTTGACAAAACTACATGG+AGG | - | chr4_2:74722855-74722874 | None:intergenic | 30.0% | |
| ! | TGCTATTTGACAAAACTACA+TGG | - | chr4_2:74722858-74722877 | None:intergenic | 30.0% |
| CTTGTACTAATAGTGTATTG+TGG | - | chr4_2:74722930-74722949 | None:intergenic | 30.0% | |
| CACAATACACTATTAGTACA+AGG | + | chr4_2:74722928-74722947 | Msa0622300:intron | 30.0% | |
| TTTAATAGAAGCAATAGGGT+TGG | + | chr4_2:74722956-74722975 | Msa0622300:intron | 30.0% | |
| TGATCCTTCACAATATAATG+TGG | + | chr4_2:74723061-74723080 | Msa0622300:intron | 30.0% | |
| AATGCCACATTATATTGTGA+AGG | - | chr4_2:74723068-74723087 | None:intergenic | 30.0% | |
| AGGTAAGATATTCAACAAAC+AGG | + | chr4_2:74723204-74723223 | Msa0622300:CDS | 30.0% | |
| TAAGATATTCAACAAACAGG+AGG | + | chr4_2:74723207-74723226 | Msa0622300:CDS | 30.0% | |
| ! | TTACATATTCCTTTTCGTTC+TGG | - | chr4_2:74723594-74723613 | None:intergenic | 30.0% |
| AGTGAATTGCCTACTTCTAA+TGG | + | chr4_2:74719391-74719410 | Msa0622300:CDS | 35.0% | |
| GTGAATTGCCTACTTCTAAT+GGG | + | chr4_2:74719392-74719411 | Msa0622300:CDS | 35.0% | |
| !! | GCTGATAATTCGAGTTTTTC+TGG | + | chr4_2:74719442-74719461 | Msa0622300:CDS | 35.0% |
| !!! | TGGATCGAGTTTTAATTCGT+GGG | + | chr4_2:74719477-74719496 | Msa0622300:intron | 35.0% |
| GGAATTGTAGTTATGGAGAT+AGG | + | chr4_2:74719613-74719632 | Msa0622300:CDS | 35.0% | |
| TTTCTTCACTCTTGGAATGT+TGG | + | chr4_2:74719642-74719661 | Msa0622300:CDS | 35.0% | |
| ATAACAATGTTGGCATCCAT+AGG | - | chr4_2:74719785-74719804 | None:intergenic | 35.0% | |
| !! | TTATGTTTTGAATGGGGGTT+AGG | + | chr4_2:74720055-74720074 | Msa0622300:intron | 35.0% |
| TCAATTGTCAAGTGTTAGAG+AGG | + | chr4_2:74720098-74720117 | Msa0622300:intron | 35.0% | |
| TAATATACTATGGCCCTGTT+TGG | + | chr4_2:74720204-74720223 | Msa0622300:intron | 35.0% | |
| !! | CCAAAAAAGCACTCATATAG+GGG | - | chr4_2:74720491-74720510 | None:intergenic | 35.0% |
| !! | CCCAAAAAAGCACTCATATA+GGG | - | chr4_2:74720492-74720511 | None:intergenic | 35.0% |
| !!! | CCCTATATGAGTGCTTTTTT+GGG | + | chr4_2:74720489-74720508 | Msa0622300:intron | 35.0% |
| !! | ACCCAAAAAAGCACTCATAT+AGG | - | chr4_2:74720493-74720512 | None:intergenic | 35.0% |
| ! | TTTGGTTTCGTTGAATGAAC+AGG | + | chr4_2:74720533-74720552 | Msa0622300:intron | 35.0% |
| TTGAATGAACAGGTTGTAAG+TGG | + | chr4_2:74720543-74720562 | Msa0622300:intron | 35.0% | |
| GAAGTAATGATGAGACTGTA+AGG | + | chr4_2:74720604-74720623 | Msa0622300:CDS | 35.0% | |
| TGTATAGCTGTGATCAATCT+TGG | + | chr4_2:74720819-74720838 | Msa0622300:CDS | 35.0% | |
| ! | TGGCATACCCAATTTTGTTA+AGG | + | chr4_2:74720887-74720906 | Msa0622300:CDS | 35.0% |
| ATCGTAACTGATATCCTGTT+TGG | + | chr4_2:74721012-74721031 | Msa0622300:intron | 35.0% | |
| ATCAATGAGAACAACCAAAC+AGG | - | chr4_2:74721029-74721048 | None:intergenic | 35.0% | |
| !!! | GGTTGTTCTCATTGATTTTC+AGG | + | chr4_2:74721033-74721052 | Msa0622300:intron | 35.0% |
| !!! | TTCTCATTGATTTTCAGGCT+TGG | + | chr4_2:74721038-74721057 | Msa0622300:intron | 35.0% |
| TTGGAACACGCAAAATTCAA+TGG | + | chr4_2:74721057-74721076 | Msa0622300:CDS | 35.0% | |
| TCAATGGAGATAAGTCTAGA+TGG | + | chr4_2:74721073-74721092 | Msa0622300:CDS | 35.0% | |
| ! | TAGTTTTCAATCCCAGATAG+CGG | - | chr4_2:74721341-74721360 | None:intergenic | 35.0% |
| ! | CTATCTGGGATTGAAAACTA+TGG | + | chr4_2:74721341-74721360 | Msa0622300:intron | 35.0% |
| !! | GTTTATGCCTTTAGGATCTT+AGG | + | chr4_2:74721363-74721382 | Msa0622300:intron | 35.0% |
| GGAGCTAATAGACTTTATTC+TGG | + | chr4_2:74721587-74721606 | Msa0622300:CDS | 35.0% | |
| TGTTATGATTTATGCAGGTG+TGG | + | chr4_2:74721912-74721931 | Msa0622300:intron | 35.0% | |
| ATAAGATCAACACATTCCAG+GGG | - | chr4_2:74722017-74722036 | None:intergenic | 35.0% | |
| CATAAGATCAACACATTCCA+GGG | - | chr4_2:74722018-74722037 | None:intergenic | 35.0% | |
| ACATAAGATCAACACATTCC+AGG | - | chr4_2:74722019-74722038 | None:intergenic | 35.0% | |
| TCTTGTCCCATTAGAAATGT+TGG | + | chr4_2:74722047-74722066 | Msa0622300:intron | 35.0% | |
| ATGAGTTCAGTTCATTAGGT+TGG | - | chr4_2:74722133-74722152 | None:intergenic | 35.0% | |
| CTCATTGAAAATGATCATGC+AGG | - | chr4_2:74722337-74722356 | None:intergenic | 35.0% | |
| !! | TATTTGTTATAGTGGTGACG+TGG | + | chr4_2:74722491-74722510 | Msa0622300:intron | 35.0% |
| TGATGTTATGATCTGCTTGT+AGG | + | chr4_2:74722529-74722548 | Msa0622300:intron | 35.0% | |
| GATGTTATGATCTGCTTGTA+GGG | + | chr4_2:74722530-74722549 | Msa0622300:intron | 35.0% | |
| ! | TTGCAAGAGCATAGAAGTAT+GGG | - | chr4_2:74722596-74722615 | None:intergenic | 35.0% |
| ! | GTTTTGTCAAATAGCAGCTA+TGG | + | chr4_2:74722862-74722881 | Msa0622300:intron | 35.0% |
| TTTATCAGTGTTGTCAATCG+AGG | - | chr4_2:74723030-74723049 | None:intergenic | 35.0% | |
| ! | GACACTGTCTTTTATATCTC+TGG | + | chr4_2:74723117-74723136 | Msa0622300:intron | 35.0% |
| AGTTAAGAATGACTTCACGA+TGG | - | chr4_2:74723150-74723169 | None:intergenic | 35.0% | |
| !!! | TCTTTTTAGAATGTGAGCTG+TGG | + | chr4_2:74723633-74723652 | Msa0622300:three_prime_UTR | 35.0% |
| !! | GTTTTAGTGTTAAGTATCCC+AGG | + | chr4_2:74723655-74723674 | Msa0622300:three_prime_UTR | 35.0% |
| AAGCGTGTTTACAATCGTCT+TGG | + | chr4_2:74719277-74719296 | Msa0622300:CDS | 40.0% | |
| GTGTTTACAATCGTCTTGGT+GGG | + | chr4_2:74719281-74719300 | Msa0622300:CDS | 40.0% | |
| ATTCTTTGAATCACCACCGT+TGG | - | chr4_2:74719308-74719327 | None:intergenic | 40.0% | |
| TCACTATGCAGAAAAGGACA+TGG | - | chr4_2:74719376-74719395 | None:intergenic | 40.0% | |
| GGCAATTCACTATGCAGAAA+AGG | - | chr4_2:74719382-74719401 | None:intergenic | 40.0% | |
| TTGCCTACTTCTAATGGGAA+TGG | + | chr4_2:74719397-74719416 | Msa0622300:CDS | 40.0% | |
| !!! | GTGGATCGAGTTTTAATTCG+TGG | + | chr4_2:74719476-74719495 | Msa0622300:intron | 40.0% |
| !!! | GGATCGAGTTTTAATTCGTG+GGG | + | chr4_2:74719478-74719497 | Msa0622300:intron | 40.0% |
| GGTGTAAGTTTCTTCACTCT+TGG | + | chr4_2:74719634-74719653 | Msa0622300:CDS | 40.0% | |
| !! | ACTCTTGGAATGTTGGTGAT+GGG | + | chr4_2:74719649-74719668 | Msa0622300:CDS | 40.0% |
| !! | TCTTTGTTGACTCAGCTTGA+AGG | + | chr4_2:74719675-74719694 | Msa0622300:CDS | 40.0% |
| TCAGCTTGAAGGACATAAGA+AGG | + | chr4_2:74719686-74719705 | Msa0622300:CDS | 40.0% | |
| CGGTTTCACATTATCTAGAC+AGG | - | chr4_2:74719925-74719944 | None:intergenic | 40.0% | |
| !!! | CCCCTATATGAGTGCTTTTT+TGG | + | chr4_2:74720488-74720507 | Msa0622300:intron | 40.0% |
| !!! | TGAGTTGATGGGATGAGTTT+TGG | + | chr4_2:74720515-74720534 | Msa0622300:intron | 40.0% |
| TAAAGCTTATCCGAACCAGA+GGG | - | chr4_2:74720579-74720598 | None:intergenic | 40.0% | |
| ATAAAGCTTATCCGAACCAG+AGG | - | chr4_2:74720580-74720599 | None:intergenic | 40.0% | |
| ! | GGTTCGGATAAGCTTTATAC+TGG | + | chr4_2:74720582-74720601 | Msa0622300:CDS | 40.0% |
| ATGATGAGACTGTAAGGGTT+TGG | + | chr4_2:74720610-74720629 | Msa0622300:CDS | 40.0% | |
| TGATGAGACTGTAAGGGTTT+GGG | + | chr4_2:74720611-74720630 | Msa0622300:CDS | 40.0% | |
| ATAGCTGTGATCAATCTTGG+CGG | + | chr4_2:74720822-74720841 | Msa0622300:CDS | 40.0% | |
| GTAGGTTGTATGATCAGTGA+AGG | + | chr4_2:74720849-74720868 | Msa0622300:CDS | 40.0% | |
| ! | TCTCCTGGTATTCCAGTTTT+GGG | + | chr4_2:74721299-74721318 | Msa0622300:intron | 40.0% |
| TACACCTTCAATTCTCTTGC+AGG | + | chr4_2:74721463-74721482 | Msa0622300:intron | 40.0% | |
| AGGATGGAGCTATATTGGTA+TGG | + | chr4_2:74721483-74721502 | Msa0622300:intron | 40.0% | |
| AACTAACGAAACAACACCAC+GGG | - | chr4_2:74721564-74721583 | None:intergenic | 40.0% | |
| CAACTAACGAAACAACACCA+CGG | - | chr4_2:74721565-74721584 | None:intergenic | 40.0% | |
| !! | GGTGTTGTTTCGTTAGTTGT+TGG | + | chr4_2:74721566-74721585 | Msa0622300:CDS | 40.0% |
| !! | TTCCATCCGTTGTTTCTTTC+AGG | + | chr4_2:74721708-74721727 | Msa0622300:intron | 40.0% |
| TCCACACCTGAAAGAAACAA+CGG | - | chr4_2:74721717-74721736 | None:intergenic | 40.0% | |
| GTAAACACTGCAAGGTTTCA+AGG | - | chr4_2:74721741-74721760 | None:intergenic | 40.0% | |
| ! | GTTGCAAGAGCATAGAAGTA+TGG | - | chr4_2:74722597-74722616 | None:intergenic | 40.0% |
| GGGAAATCAACTACTTACGA+TGG | - | chr4_2:74722647-74722666 | None:intergenic | 40.0% | |
| TTGTTCAGATTTGCAGAGAG+AGG | + | chr4_2:74723184-74723203 | Msa0622300:intron | 40.0% | |
| AGCATATTCTTCACTGGTGA+TGG | + | chr4_2:74723256-74723275 | Msa0622300:CDS | 40.0% | |
| TTAGTGCACGTTATTGGATG+TGG | - | chr4_2:74723323-74723342 | None:intergenic | 40.0% | |
| TCCAATAACGTGCACTAAAG+TGG | + | chr4_2:74723325-74723344 | Msa0622300:exon | 40.0% | |
| CCAATAACGTGCACTAAAGT+GGG | + | chr4_2:74723326-74723345 | Msa0622300:exon | 40.0% | |
| AGGGAATTCAGTGTGAAGTA+TGG | + | chr4_2:74723424-74723443 | Msa0622300:intron | 40.0% | |
| CAGAGAGGAGAATAAATGCT+AGG | + | chr4_2:74723451-74723470 | Msa0622300:intron | 40.0% | |
| AGAGGAGAATAAATGCTAGG+AGG | + | chr4_2:74723454-74723473 | Msa0622300:three_prime_UTR | 40.0% | |
| GAGGAGAATAAATGCTAGGA+GGG | + | chr4_2:74723455-74723474 | Msa0622300:three_prime_UTR | 40.0% | |
| GATTGCACCTAATGCATGAA+TGG | - | chr4_2:74723516-74723535 | None:intergenic | 40.0% | |
| CGTGTTTACAATCGTCTTGG+TGG | + | chr4_2:74719280-74719299 | Msa0622300:CDS | 45.0% | |
| ! | GTGTGTTTTCAATGGCAAGC+AGG | + | chr4_2:74719334-74719353 | Msa0622300:CDS | 45.0% |
| GCACCATTCCCATTAGAAGT+AGG | - | chr4_2:74719403-74719422 | None:intergenic | 45.0% | |
| GGAATGGTGCTCCTTCTAAA+CGG | + | chr4_2:74719413-74719432 | Msa0622300:CDS | 45.0% | |
| GAATGGTGCTCCTTCTAAAC+GGG | + | chr4_2:74719414-74719433 | Msa0622300:CDS | 45.0% | |
| TCAGCATAAGCCCGTTTAGA+AGG | - | chr4_2:74719427-74719446 | None:intergenic | 45.0% | |
| !! | AGTTTTTCTGGTAATCGGCG+TGG | + | chr4_2:74719454-74719473 | Msa0622300:CDS | 45.0% |
| ! | CACTCTTGGAATGTTGGTGA+TGG | + | chr4_2:74719648-74719667 | Msa0622300:CDS | 45.0% |
| AATTGCTATGCCCTCTGGTT+CGG | + | chr4_2:74720566-74720585 | Msa0622300:CDS | 45.0% | |
| TTGTAACAACCTGTCCAGAC+TGG | - | chr4_2:74720641-74720660 | None:intergenic | 45.0% | |
| ATCAATCTTGGCGGTGAAGT+AGG | + | chr4_2:74720831-74720850 | Msa0622300:CDS | 45.0% | |
| GGTATGCCAACAAAAAGCCA+GGG | - | chr4_2:74720876-74720895 | None:intergenic | 45.0% | |
| GTTACGATACTACGTCTAGC+AGG | - | chr4_2:74721000-74721019 | None:intergenic | 45.0% | |
| ATAAGTCTAGATGGCCCTGT+CGG | + | chr4_2:74721082-74721101 | Msa0622300:CDS | 45.0% | |
| GTGCATAAACTTGTCCGACA+GGG | - | chr4_2:74721099-74721118 | None:intergenic | 45.0% | |
| AGTGCATAAACTTGTCCGAC+AGG | - | chr4_2:74721100-74721119 | None:intergenic | 45.0% | |
| GAGGATAGTGTGAGATGGAA+TGG | - | chr4_2:74721281-74721300 | None:intergenic | 45.0% | |
| CAAAACTGGAATACCAGGAG+AGG | - | chr4_2:74721300-74721319 | None:intergenic | 45.0% | |
| ! | CTCTCCTGGTATTCCAGTTT+TGG | + | chr4_2:74721298-74721317 | Msa0622300:intron | 45.0% |
| ! | CTCCTGGTATTCCAGTTTTG+GGG | + | chr4_2:74721300-74721319 | Msa0622300:intron | 45.0% |
| AACCCCAAAACTGGAATACC+AGG | - | chr4_2:74721305-74721324 | None:intergenic | 45.0% | |
| CCATCCTGCAAGAGAATTGA+AGG | - | chr4_2:74721470-74721489 | None:intergenic | 45.0% | |
| CCTTCAATTCTCTTGCAGGA+TGG | + | chr4_2:74721467-74721486 | Msa0622300:intron | 45.0% | |
| CTTGCAGGATGGAGCTATAT+TGG | + | chr4_2:74721478-74721497 | Msa0622300:intron | 45.0% | |
| TGACCTTTAAGTGATGCAGC+TGG | - | chr4_2:74721539-74721558 | None:intergenic | 45.0% | |
| TCACTTAAAGGTCATACCCG+TGG | + | chr4_2:74721545-74721564 | Msa0622300:CDS | 45.0% | |
| CACCTGAAAGAAACAACGGA+TGG | - | chr4_2:74721713-74721732 | None:intergenic | 45.0% | |
| !! | TCCGTTGTTTCTTTCAGGTG+TGG | + | chr4_2:74721713-74721732 | Msa0622300:intron | 45.0% |
| CAGTGTCTGTAAACACTGCA+AGG | - | chr4_2:74721749-74721768 | None:intergenic | 45.0% | |
| ! | TGGTGATGTCTGTTCTTTGC+TGG | + | chr4_2:74721785-74721804 | Msa0622300:CDS | 45.0% |
| GGTGATGTCTGTTCTTTGCT+GGG | + | chr4_2:74721786-74721805 | Msa0622300:CDS | 45.0% | |
| TATGCAGGTGTGGTATGCTA+CGG | + | chr4_2:74721922-74721941 | Msa0622300:intron | 45.0% | |
| TGCTACGGAAAGTGGAAATC+TGG | + | chr4_2:74721937-74721956 | Msa0622300:CDS | 45.0% | |
| TCATAAGGGGCAAGCAGTAT+TGG | - | chr4_2:74722281-74722300 | None:intergenic | 45.0% | |
| TAGGGTATAATCACCCTGTG+TGG | + | chr4_2:74722548-74722567 | Msa0622300:intron | 45.0% | |
| AGGGTATAATCACCCTGTGT+GGG | + | chr4_2:74722549-74722568 | Msa0622300:intron | 45.0% | |
| CTTACGATGGCAGATCATAG+AGG | - | chr4_2:74722634-74722653 | None:intergenic | 45.0% | |
| GTGTTGTCAATCGAGGATCA+TGG | - | chr4_2:74723023-74723042 | None:intergenic | 45.0% | |
| GAATGACTTCACGATGGTCA+GGG | - | chr4_2:74723144-74723163 | None:intergenic | 45.0% | |
| AGAATGACTTCACGATGGTC+AGG | - | chr4_2:74723145-74723164 | None:intergenic | 45.0% | |
| CCAGTGAAGAATATGCTACC+AGG | - | chr4_2:74723253-74723272 | None:intergenic | 45.0% | |
| CCTGGTAGCATATTCTTCAC+TGG | + | chr4_2:74723250-74723269 | Msa0622300:CDS | 45.0% | |
| !! | TTCTTCACTGGTGATGGAAC+CGG | + | chr4_2:74723262-74723281 | Msa0622300:CDS | 45.0% |
| TCCAATTCCACACTCTCACT+TGG | - | chr4_2:74723288-74723307 | None:intergenic | 45.0% | |
| GTGGAATTGGATACCTGAAC+CGG | + | chr4_2:74723297-74723316 | Msa0622300:CDS | 45.0% | |
| CCCACTTTAGTGCACGTTAT+TGG | - | chr4_2:74723329-74723348 | None:intergenic | 45.0% | |
| ATAACGTGCACTAAAGTGGG+AGG | + | chr4_2:74723329-74723348 | Msa0622300:exon | 45.0% | |
| ! | GTGAAGTATGGATTGCAGAG+AGG | + | chr4_2:74723436-74723455 | Msa0622300:intron | 45.0% |
| ATAAATGCTAGGAGGGATCC+TGG | + | chr4_2:74723462-74723481 | Msa0622300:three_prime_UTR | 45.0% | |
| TAATGCATGAATGGCTGCAG+AGG | - | chr4_2:74723507-74723526 | None:intergenic | 45.0% | |
| TCTGCAGCCATTCATGCATT+AGG | + | chr4_2:74723506-74723525 | Msa0622300:three_prime_UTR | 45.0% | |
| TAGGTGCAATCCAAGTTCTG+CGG | + | chr4_2:74723525-74723544 | Msa0622300:three_prime_UTR | 45.0% | |
| CAGCCTGCTCAGTTAAATCT+CGG | - | chr4_2:74723551-74723570 | None:intergenic | 45.0% | |
| ! | TATTCCTTTTCGTTCTGGCC+CGG | - | chr4_2:74723589-74723608 | None:intergenic | 45.0% |
| CTAAAGCAAGCTTAGTGCCT+GGG | - | chr4_2:74723675-74723694 | None:intergenic | 45.0% | |
| ACTAAAGCAAGCTTAGTGCC+TGG | - | chr4_2:74723676-74723695 | None:intergenic | 45.0% | |
| ! | GGCACTAAGCTTGCTTTAGT+AGG | + | chr4_2:74723676-74723695 | Msa0622300:three_prime_UTR | 45.0% |
| !!! | ACATATTATAATTATAATTT+TGG | + | chr4_2:74720032-74720051 | Msa0622300:intron | 5.0% |
| ! | AATCGTCTTGGTGGGTCCAA+CGG | + | chr4_2:74719289-74719308 | Msa0622300:CDS | 50.0% |
| !! | TTTTCTGGTAATCGGCGTGG+TGG | + | chr4_2:74719457-74719476 | Msa0622300:CDS | 50.0% |
| !!! | CGAGTTTTAATTCGTGGGGC+CGG | + | chr4_2:74719482-74719501 | Msa0622300:intron | 50.0% |
| !!! | GAGTTTTAATTCGTGGGGCC+GGG | + | chr4_2:74719483-74719502 | Msa0622300:intron | 50.0% |
| !!! | AGTTTTAATTCGTGGGGCCG+GGG | + | chr4_2:74719484-74719503 | Msa0622300:intron | 50.0% |
| AGTGGAATTGCTATGCCCTC+TGG | + | chr4_2:74720561-74720580 | Msa0622300:CDS | 50.0% | |
| GTATGATCAGTGAAGGTCCC+TGG | + | chr4_2:74720856-74720875 | Msa0622300:CDS | 50.0% | |
| !! | GAAGGTCCCTGGCTTTTTGT+TGG | + | chr4_2:74720867-74720886 | Msa0622300:CDS | 50.0% |
| GGGTATGCCAACAAAAAGCC+AGG | - | chr4_2:74720877-74720896 | None:intergenic | 50.0% | |
| TATGCTCTTTGCTGGTACGC+AGG | + | chr4_2:74721135-74721154 | Msa0622300:CDS | 50.0% | |
| CAGGAGAGGATAGTGTGAGA+TGG | - | chr4_2:74721286-74721305 | None:intergenic | 50.0% | |
| CATCTCACACTATCCTCTCC+TGG | + | chr4_2:74721284-74721303 | Msa0622300:intron | 50.0% | |
| GAGCCAGCTGCATCACTTAA+AGG | + | chr4_2:74721533-74721552 | Msa0622300:CDS | 50.0% | |
| ACAGACACTGACAGAGCACA+CGG | + | chr4_2:74721759-74721778 | Msa0622300:CDS | 50.0% | |
| GTGTGGTATGCTACGGAAAG+TGG | + | chr4_2:74721929-74721948 | Msa0622300:CDS | 50.0% | |
| TGCATCATGCATCCCACACA+GGG | - | chr4_2:74722564-74722583 | None:intergenic | 50.0% | |
| TGTGGGATGCATGATGCACA+AGG | + | chr4_2:74722566-74722585 | Msa0622300:CDS | 50.0% | |
| ATTCCACACTCTCACTTGGC+CGG | - | chr4_2:74723284-74723303 | None:intergenic | 50.0% | |
| ! | GCCAAGTGAGAGTGTGGAAT+TGG | + | chr4_2:74723284-74723303 | Msa0622300:CDS | 50.0% |
| ! | TTATTGGATGTGGCCGGTTC+AGG | - | chr4_2:74723313-74723332 | None:intergenic | 50.0% |
| TGCACGTTATTGGATGTGGC+CGG | - | chr4_2:74723319-74723338 | None:intergenic | 50.0% | |
| TAAATCTCGGCCGCAGAACT+TGG | - | chr4_2:74723538-74723557 | None:intergenic | 50.0% | |
| ! | GGCAGCTCTAACCCCAAAAC+TGG | - | chr4_2:74721314-74721333 | None:intergenic | 55.0% |
| ! | TCAATCCCAGATAGCGGCAC+TGG | - | chr4_2:74721335-74721354 | None:intergenic | 55.0% |
| !! | TGCAGCTGGCTCGAAACAGT+TGG | - | chr4_2:74721525-74721544 | None:intergenic | 55.0% |
| GTGCATCATGCATCCCACAC+AGG | - | chr4_2:74722565-74722584 | None:intergenic | 55.0% | |
| GAGGTGCGAGCAATTCAGAC+TGG | + | chr4_2:74723226-74723245 | Msa0622300:CDS | 55.0% | |
| ! | CGAGCAATTCAGACTGGTCC+TGG | + | chr4_2:74723232-74723251 | Msa0622300:CDS | 55.0% |
| TGGACGGCTGAAGAGAATCC+AGG | - | chr4_2:74723483-74723502 | None:intergenic | 55.0% | |
| GAATGGCTGCAGAGGATGGA+CGG | - | chr4_2:74723499-74723518 | None:intergenic | 55.0% | |
| GCATGAATGGCTGCAGAGGA+TGG | - | chr4_2:74723503-74723522 | None:intergenic | 55.0% | |
| CGGCCGAGATTTAACTGAGC+AGG | + | chr4_2:74723545-74723564 | Msa0622300:three_prime_UTR | 55.0% | |
| !! | GTAGGTGGTGGTGGTGGTAG+AGG | + | chr4_2:74719546-74719565 | Msa0622300:CDS | 60.0% |
| ! | AGGGTTTGGGACTGCCAGTC+TGG | + | chr4_2:74720624-74720643 | Msa0622300:CDS | 60.0% |
| TTGGGACTGCCAGTCTGGAC+AGG | + | chr4_2:74720629-74720648 | Msa0622300:CDS | 60.0% | |
| ! | AGCTGCCAGTGCCGCTATCT+GGG | + | chr4_2:74721327-74721346 | Msa0622300:intron | 60.0% |
| ACTGACAGAGCACACGGCTG+TGG | + | chr4_2:74721765-74721784 | Msa0622300:CDS | 60.0% | |
| GAACCGGCCAAGTGAGAGTG+TGG | + | chr4_2:74723278-74723297 | Msa0622300:CDS | 60.0% | |
| GCTGTACGCTGCAGAGGATC+CGG | + | chr4_2:74723567-74723586 | Msa0622300:three_prime_UTR | 60.0% | |
| CTGTACGCTGCAGAGGATCC+GGG | + | chr4_2:74723568-74723587 | Msa0622300:three_prime_UTR | 60.0% | |
| GGATCCGGGCCAGAACGAAA+AGG | + | chr4_2:74723582-74723601 | Msa0622300:three_prime_UTR | 60.0% | |
| ! | CGTCTTGGTGGGTCCAACGG+TGG | + | chr4_2:74719292-74719311 | Msa0622300:CDS | 65.0% |
| TAATTCGTGGGGCCGGGGAG+AGG | + | chr4_2:74719489-74719508 | Msa0622300:intron | 65.0% | |
| !! | AGAGGTGGTGGACGTGGTCG+TGG | + | chr4_2:74719507-74719526 | Msa0622300:intron | 65.0% |
| !! | GTGGTGGACGTGGTCGTGGT+GGG | + | chr4_2:74719511-74719530 | Msa0622300:CDS | 65.0% |
| ! | TGGTGGACGTGGTCGTGGTG+GGG | + | chr4_2:74719512-74719531 | Msa0622300:CDS | 65.0% |
| !! | GGTGGTGTAGGTGGTGGTGG+TGG | + | chr4_2:74719540-74719559 | Msa0622300:CDS | 65.0% |
| ! | GAGCTGCCAGTGCCGCTATC+TGG | + | chr4_2:74721326-74721345 | Msa0622300:intron | 65.0% |
| GAGCAGGCTGTACGCTGCAG+AGG | + | chr4_2:74723561-74723580 | Msa0622300:three_prime_UTR | 65.0% | |
| CCACGTCCACCACCTCTCCC+CGG | - | chr4_2:74719504-74719523 | None:intergenic | 70.0% | |
| !! | GGTGGTGGACGTGGTCGTGG+TGG | + | chr4_2:74719510-74719529 | Msa0622300:intron | 70.0% |
| GGTGGACGTGGTCGTGGTGG+GGG | + | chr4_2:74719513-74719532 | Msa0622300:CDS | 70.0% | |
| ! | GACGTGGTCGTGGTGGGGGA+CGG | + | chr4_2:74719517-74719536 | Msa0622300:CDS | 70.0% |
| ! | ACGTGGTCGTGGTGGGGGAC+GGG | + | chr4_2:74719518-74719537 | Msa0622300:CDS | 70.0% |
| GGACGGGGTGGTGTAGGTGG+TGG | + | chr4_2:74719534-74719553 | Msa0622300:CDS | 70.0% | |
| ! | CGGGGTGGTGTAGGTGGTGG+TGG | + | chr4_2:74719537-74719556 | Msa0622300:CDS | 70.0% |
| TTCGTGGGGCCGGGGAGAGG+TGG | + | chr4_2:74719492-74719511 | Msa0622300:intron | 75.0% | |
| !! | CCGGGGAGAGGTGGTGGACG+TGG | + | chr4_2:74719501-74719520 | Msa0622300:intron | 75.0% |
| ! | CGTGGTCGTGGTGGGGGACG+GGG | + | chr4_2:74719519-74719538 | Msa0622300:CDS | 75.0% |
| GGTGGGGGACGGGGTGGTGT+AGG | + | chr4_2:74719528-74719547 | Msa0622300:CDS | 75.0% | |
| GGGGGACGGGGTGGTGTAGG+TGG | + | chr4_2:74719531-74719550 | Msa0622300:CDS | 75.0% | |
| ! | GTGGGGCCGGGGAGAGGTGG+TGG | + | chr4_2:74719495-74719514 | Msa0622300:intron | 80.0% |
| !! | GGTCGTGGTGGGGGACGGGG+TGG | + | chr4_2:74719522-74719541 | Msa0622300:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 74719256 | 74723807 | 74719256 | ID=Msa0622300;Name=Msa0622300 |
| chr4_2 | mRNA | 74719256 | 74723807 | 74719256 | ID=Msa0622300-mRNA-1;Parent=Msa0622300;Name=Msa0622300-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.9|0.81|1|0.8|0.63|11|373|429 |
| chr4_2 | exon | 74719256 | 74719484 | 74719256 | ID=Msa0622300-mRNA-1:exon:22619;Parent=Msa0622300-mRNA-1 |
| chr4_2 | exon | 74719511 | 74719707 | 74719511 | ID=Msa0622300-mRNA-1:exon:22620;Parent=Msa0622300-mRNA-1 |
| chr4_2 | exon | 74720555 | 74720650 | 74720555 | ID=Msa0622300-mRNA-1:exon:22621;Parent=Msa0622300-mRNA-1 |
| chr4_2 | exon | 74720819 | 74720908 | 74720819 | ID=Msa0622300-mRNA-1:exon:22622;Parent=Msa0622300-mRNA-1 |
| chr4_2 | exon | 74721055 | 74721156 | 74721055 | ID=Msa0622300-mRNA-1:exon:22623;Parent=Msa0622300-mRNA-1 |
| chr4_2 | exon | 74721485 | 74721631 | 74721485 | ID=Msa0622300-mRNA-1:exon:22624;Parent=Msa0622300-mRNA-1 |
| chr4_2 | exon | 74721730 | 74721849 | 74721730 | ID=Msa0622300-mRNA-1:exon:22625;Parent=Msa0622300-mRNA-1 |
| chr4_2 | exon | 74721929 | 74721988 | 74721929 | ID=Msa0622300-mRNA-1:exon:22626;Parent=Msa0622300-mRNA-1 |
| chr4_2 | exon | 74722551 | 74722648 | 74722551 | ID=Msa0622300-mRNA-1:exon:22627;Parent=Msa0622300-mRNA-1 |
| chr4_2 | exon | 74723192 | 74723361 | 74723192 | ID=Msa0622300-mRNA-1:exon:22628;Parent=Msa0622300-mRNA-1 |
| chr4_2 | exon | 74723454 | 74723807 | 74723454 | ID=Msa0622300-mRNA-1:exon:22629;Parent=Msa0622300-mRNA-1 |
| chr4_2 | CDS | 74719256 | 74719484 | 74719256 | ID=Msa0622300-mRNA-1:cds;Parent=Msa0622300-mRNA-1 |
| chr4_2 | CDS | 74719511 | 74719707 | 74719511 | ID=Msa0622300-mRNA-1:cds;Parent=Msa0622300-mRNA-1 |
| chr4_2 | CDS | 74720555 | 74720650 | 74720555 | ID=Msa0622300-mRNA-1:cds;Parent=Msa0622300-mRNA-1 |
| chr4_2 | CDS | 74720819 | 74720908 | 74720819 | ID=Msa0622300-mRNA-1:cds;Parent=Msa0622300-mRNA-1 |
| chr4_2 | CDS | 74721055 | 74721156 | 74721055 | ID=Msa0622300-mRNA-1:cds;Parent=Msa0622300-mRNA-1 |
| chr4_2 | CDS | 74721485 | 74721631 | 74721485 | ID=Msa0622300-mRNA-1:cds;Parent=Msa0622300-mRNA-1 |
| chr4_2 | CDS | 74721730 | 74721849 | 74721730 | ID=Msa0622300-mRNA-1:cds;Parent=Msa0622300-mRNA-1 |
| chr4_2 | CDS | 74721929 | 74721988 | 74721929 | ID=Msa0622300-mRNA-1:cds;Parent=Msa0622300-mRNA-1 |
| chr4_2 | CDS | 74722551 | 74722648 | 74722551 | ID=Msa0622300-mRNA-1:cds;Parent=Msa0622300-mRNA-1 |
| chr4_2 | CDS | 74723192 | 74723342 | 74723192 | ID=Msa0622300-mRNA-1:cds;Parent=Msa0622300-mRNA-1 |
| chr4_2 | three_prime_UTR | 74723343 | 74723361 | 74723343 | ID=Msa0622300-mRNA-1:three_prime_utr;Parent=Msa0622300-mRNA-1 |
| chr4_2 | three_prime_UTR | 74723454 | 74723807 | 74723454 | ID=Msa0622300-mRNA-1:three_prime_utr;Parent=Msa0622300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
