Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622540 | XP_013448337.1 | 97.600 | 125 | 2 | 1 | 1 | 124 | 1 | 125 | 4.03e-85 | 254 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622540 | A0A072TY19 | 97.600 | 125 | 2 | 1 | 1 | 124 | 1 | 125 | 1.92e-85 | 254 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0622540 | Msa1016500 | 0.842062 | 3.251243e-58 | -8.615850e-47 |
| Msa0622540 | Msa1016510 | 0.838508 | 2.758087e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622540 | MtrunA17_Chr7g0231881 | 97.600 | 125 | 2 | 1 | 1 | 124 | 1 | 125 | 3.70e-89 | 254 |
| Msa0622540 | MtrunA17_Chr8g0334651 | 57.273 | 110 | 33 | 3 | 1 | 110 | 1 | 96 | 8.00e-37 | 120 |
| Msa0622540 | MtrunA17_Chr5g0427021 | 49.057 | 53 | 27 | 0 | 5 | 57 | 14 | 66 | 3.11e-13 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622540 | AT3G60520.1 | 54.478 | 134 | 46 | 6 | 1 | 124 | 1 | 129 | 8.15e-35 | 117 |
| Msa0622540 | AT1G02070.1 | 54.615 | 130 | 49 | 4 | 5 | 124 | 2 | 131 | 2.60e-34 | 115 |
| Msa0622540 | AT3G60520.2 | 48.000 | 100 | 38 | 5 | 34 | 124 | 24 | 118 | 2.32e-15 | 67.4 |
Find 44 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGAGTTGTGATGATAAAA+AGG | 0.210311 | 4_2:-74979616 | None:intergenic |
| AACCAACCGATCGGAATATT+CGG | 0.326610 | 4_2:+74980346 | Msa0622540:CDS |
| TTGATGATCCACCATTCTTA+TGG | 0.333830 | 4_2:-74979661 | None:intergenic |
| AGGTATTGTAGCAACTACTA+TGG | 0.356994 | 4_2:+74980212 | Msa0622540:intron |
| GGTCACCGGTTTCTTTGAAT+TGG | 0.367398 | 4_2:-74980303 | None:intergenic |
| TGTCGCGACGATCTCATTTC+CGG | 0.389983 | 4_2:-74980324 | None:intergenic |
| CGGAGATAGAACAGTGTGAT+TGG | 0.433454 | 4_2:+74980243 | Msa0622540:CDS |
| TTGCAACGGAAAAGCTTGTC+GGG | 0.440350 | 4_2:-74979717 | None:intergenic |
| ACCAACCGATCGGAATATTC+GGG | 0.471379 | 4_2:+74980347 | Msa0622540:CDS |
| TGGCACCAATTCAAAGAAAC+CGG | 0.486182 | 4_2:+74980298 | Msa0622540:CDS |
| AAAGTAATACATACGAGTGT+TGG | 0.487858 | 4_2:-74979758 | None:intergenic |
| ACGTAGGTACAAGCTTCTTA+AGG | 0.490830 | 4_2:+74980454 | Msa0622540:CDS |
| TCAACTTCTCTTGTTATGAG+TGG | 0.496632 | 4_2:+74980624 | Msa0622540:three_prime_UTR |
| GCGGTCCGTGGCGACGGCGA+AGG | 0.502361 | 4_2:-74980428 | None:intergenic |
| CGTGTGGCGGTCCGTGGCGA+CGG | 0.515666 | 4_2:-74980434 | None:intergenic |
| ACGATCTCATTTCCGGTCAC+CGG | 0.516236 | 4_2:-74980317 | None:intergenic |
| GTTGCAACGGAAAAGCTTGT+CGG | 0.516934 | 4_2:-74979718 | None:intergenic |
| ATCACCACACATGCAACAAA+CGG | 0.517973 | 4_2:-74979685 | None:intergenic |
| GAAGAGGGTGGCTCTGAGAA+GGG | 0.527687 | 4_2:+74980398 | Msa0622540:CDS |
| TGTTGCATGTGTGGTGATGT+TGG | 0.529954 | 4_2:+74979690 | Msa0622540:CDS |
| TGAAGAGGGTGGCTCTGAGA+AGG | 0.532977 | 4_2:+74980397 | Msa0622540:CDS |
| ATACATACGAGTGTTGGAAT+CGG | 0.550310 | 4_2:-74979752 | None:intergenic |
| AGAGTCCTTCGCCGTCGCCA+CGG | 0.553436 | 4_2:+74980423 | Msa0622540:CDS |
| TACCTACGTGTGGCGGTCCG+TGG | 0.554233 | 4_2:-74980440 | None:intergenic |
| ACCCGAATATTCCGATCGGT+TGG | 0.554818 | 4_2:-74980348 | None:intergenic |
| AATCTTGAATAAGAAGAAGA+AGG | 0.555136 | 4_2:+74980501 | Msa0622540:three_prime_UTR |
| TTGAAGGTGAGAGTGAGAGA+TGG | 0.555165 | 4_2:-74979587 | None:intergenic |
| AATTCAAAGAAACCGGTGAC+CGG | 0.559840 | 4_2:+74980305 | Msa0622540:CDS |
| AAACAACATGATCGTGAAGA+GGG | 0.586473 | 4_2:+74980383 | Msa0622540:CDS |
| ACGAGTGTTGGAATCGGTGG+CGG | 0.586739 | 4_2:-74979746 | None:intergenic |
| TGTGCAGCACACCATAAGAA+TGG | 0.588391 | 4_2:+74979650 | Msa0622540:exon |
| GGTGGCGGCATTTGTTGCAA+CGG | 0.592229 | 4_2:-74979731 | None:intergenic |
| CAAACCGTTTGTTGCATGTG+TGG | 0.594835 | 4_2:+74979681 | Msa0622540:CDS |
| AAGAGGGTGGCTCTGAGAAG+GGG | 0.612751 | 4_2:+74980399 | Msa0622540:CDS |
| TAAACAACATGATCGTGAAG+AGG | 0.621485 | 4_2:+74980382 | Msa0622540:CDS |
| CATACGAGTGTTGGAATCGG+TGG | 0.628121 | 4_2:-74979749 | None:intergenic |
| TCTCACCCGAATATTCCGAT+CGG | 0.641982 | 4_2:-74980352 | None:intergenic |
| CGTCGCGACAACCAACCGAT+CGG | 0.647059 | 4_2:+74980337 | Msa0622540:CDS |
| AAGAAGCTTGTACCTACGTG+TGG | 0.647552 | 4_2:-74980450 | None:intergenic |
| CAACATGATCGTGAAGAGGG+TGG | 0.664857 | 4_2:+74980386 | Msa0622540:CDS |
| GCAGCACACCATAAGAATGG+TGG | 0.664995 | 4_2:+74979653 | Msa0622540:exon |
| AAGCTTGTACCTACGTGTGG+CGG | 0.682797 | 4_2:-74980447 | None:intergenic |
| CAACTACTATGGAGAACTAG+CGG | 0.694469 | 4_2:+74980223 | Msa0622540:CDS |
| CGCCACGGACCGCCACACGT+AGG | 0.759309 | 4_2:+74980438 | Msa0622540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGATTGTTATTATTTTATT+AGG | + | chr4_2:74980142-74980161 | Msa0622540:intron | 10.0% |
| !!! | CAACATTAAAATAAATTTTA+AGG | - | chr4_2:74980183-74980202 | None:intergenic | 10.0% |
| !!! | TTTTAATGTTGTTTTTTTTA+AGG | + | chr4_2:74980192-74980211 | Msa0622540:intron | 10.0% |
| !!! | AAGATTGTTATTATTTTATT+AGG | + | chr4_2:74980142-74980161 | Msa0622540:intron | 10.0% |
| !!! | CAACATTAAAATAAATTTTA+AGG | - | chr4_2:74980183-74980202 | None:intergenic | 10.0% |
| !!! | TTTTAATGTTGTTTTTTTTA+AGG | + | chr4_2:74980192-74980211 | Msa0622540:intron | 10.0% |
| !!! | TTCATCATCTTTTATTTAAT+TGG | + | chr4_2:74979864-74979883 | Msa0622540:intron | 15.0% |
| !!! | TCATCATCTTTTATTTAATT+GGG | + | chr4_2:74979865-74979884 | Msa0622540:intron | 15.0% |
| !!! | CAAGTATATTATTTTTTGTT+TGG | + | chr4_2:74980004-74980023 | Msa0622540:intron | 15.0% |
| !!! | TTCATCATCTTTTATTTAAT+TGG | + | chr4_2:74979864-74979883 | Msa0622540:intron | 15.0% |
| !!! | TCATCATCTTTTATTTAATT+GGG | + | chr4_2:74979865-74979884 | Msa0622540:intron | 15.0% |
| !!! | CAAGTATATTATTTTTTGTT+TGG | + | chr4_2:74980004-74980023 | Msa0622540:intron | 15.0% |
| !!! | CATCATCTTTTATTTAATTG+GGG | + | chr4_2:74979866-74979885 | Msa0622540:intron | 20.0% |
| !!! | ATCATCTTTTATTTAATTGG+GGG | + | chr4_2:74979867-74979886 | Msa0622540:intron | 20.0% |
| !! | TAACCATAGTATAAAACATT+AGG | + | chr4_2:74980029-74980048 | Msa0622540:intron | 20.0% |
| !! | AACCATAGTATAAAACATTA+GGG | + | chr4_2:74980030-74980049 | Msa0622540:intron | 20.0% |
| !!! | CATCATCTTTTATTTAATTG+GGG | + | chr4_2:74979866-74979885 | Msa0622540:intron | 20.0% |
| !!! | ATCATCTTTTATTTAATTGG+GGG | + | chr4_2:74979867-74979886 | Msa0622540:intron | 20.0% |
| !! | TAACCATAGTATAAAACATT+AGG | + | chr4_2:74980029-74980048 | Msa0622540:intron | 20.0% |
| !! | AACCATAGTATAAAACATTA+GGG | + | chr4_2:74980030-74980049 | Msa0622540:intron | 20.0% |
| ! | AACACGACTTTATAACTTTA+TGG | - | chr4_2:74979971-74979990 | None:intergenic | 25.0% |
| !! | TTGAATTTTTCTCTTCACTT+TGG | - | chr4_2:74980271-74980290 | None:intergenic | 25.0% |
| ! | GAGAAAAATTCAAGACATAT+TGG | + | chr4_2:74980278-74980297 | Msa0622540:CDS | 25.0% |
| ! | AATCTTGAATAAGAAGAAGA+AGG | + | chr4_2:74980501-74980520 | Msa0622540:three_prime_UTR | 25.0% |
| ! | AACACGACTTTATAACTTTA+TGG | - | chr4_2:74979971-74979990 | None:intergenic | 25.0% |
| !! | TTGAATTTTTCTCTTCACTT+TGG | - | chr4_2:74980271-74980290 | None:intergenic | 25.0% |
| ! | GAGAAAAATTCAAGACATAT+TGG | + | chr4_2:74980278-74980297 | Msa0622540:CDS | 25.0% |
| ! | AATCTTGAATAAGAAGAAGA+AGG | + | chr4_2:74980501-74980520 | Msa0622540:three_prime_UTR | 25.0% |
| AAGAAAAAATGTGATCAGTG+AGG | - | chr4_2:74979562-74979581 | None:intergenic | 30.0% | |
| ! | GATAAAAAGGGGAATTTTGA+AGG | - | chr4_2:74979606-74979625 | None:intergenic | 30.0% |
| AGAGTTGTGATGATAAAAAG+GGG | - | chr4_2:74979617-74979636 | None:intergenic | 30.0% | |
| CAGAGTTGTGATGATAAAAA+GGG | - | chr4_2:74979618-74979637 | None:intergenic | 30.0% | |
| ACAGAGTTGTGATGATAAAA+AGG | - | chr4_2:74979619-74979638 | None:intergenic | 30.0% | |
| AAAGTAATACATACGAGTGT+TGG | - | chr4_2:74979761-74979780 | None:intergenic | 30.0% | |
| !! | ATCTTTTATTTAATTGGGGG+TGG | + | chr4_2:74979870-74979889 | Msa0622540:intron | 30.0% |
| ! | GACCCTAATGTTTTATACTA+TGG | - | chr4_2:74980035-74980054 | None:intergenic | 30.0% |
| AAGAAAAAATGTGATCAGTG+AGG | - | chr4_2:74979562-74979581 | None:intergenic | 30.0% | |
| ! | GATAAAAAGGGGAATTTTGA+AGG | - | chr4_2:74979606-74979625 | None:intergenic | 30.0% |
| AGAGTTGTGATGATAAAAAG+GGG | - | chr4_2:74979617-74979636 | None:intergenic | 30.0% | |
| CAGAGTTGTGATGATAAAAA+GGG | - | chr4_2:74979618-74979637 | None:intergenic | 30.0% | |
| ACAGAGTTGTGATGATAAAA+AGG | - | chr4_2:74979619-74979638 | None:intergenic | 30.0% | |
| AAAGTAATACATACGAGTGT+TGG | - | chr4_2:74979761-74979780 | None:intergenic | 30.0% | |
| !! | ATCTTTTATTTAATTGGGGG+TGG | + | chr4_2:74979870-74979889 | Msa0622540:intron | 30.0% |
| ! | GACCCTAATGTTTTATACTA+TGG | - | chr4_2:74980035-74980054 | None:intergenic | 30.0% |
| ACTAACCCAACACCAAAAAA+GGG | - | chr4_2:74979526-74979545 | None:intergenic | 35.0% | |
| AACTAACCCAACACCAAAAA+AGG | - | chr4_2:74979527-74979546 | None:intergenic | 35.0% | |
| ! | TTGATGATCCACCATTCTTA+TGG | - | chr4_2:74979664-74979683 | None:intergenic | 35.0% |
| !! | ATACATACGAGTGTTGGAAT+CGG | - | chr4_2:74979755-74979774 | None:intergenic | 35.0% |
| ! | AGGTATTGTAGCAACTACTA+TGG | + | chr4_2:74980212-74980231 | Msa0622540:intron | 35.0% |
| TAAACAACATGATCGTGAAG+AGG | + | chr4_2:74980382-74980401 | Msa0622540:CDS | 35.0% | |
| AAACAACATGATCGTGAAGA+GGG | + | chr4_2:74980383-74980402 | Msa0622540:CDS | 35.0% | |
| ! | TCAACTTCTCTTGTTATGAG+TGG | + | chr4_2:74980624-74980643 | Msa0622540:three_prime_UTR | 35.0% |
| ACTAACCCAACACCAAAAAA+GGG | - | chr4_2:74979526-74979545 | None:intergenic | 35.0% | |
| AACTAACCCAACACCAAAAA+AGG | - | chr4_2:74979527-74979546 | None:intergenic | 35.0% | |
| ! | TTGATGATCCACCATTCTTA+TGG | - | chr4_2:74979664-74979683 | None:intergenic | 35.0% |
| !! | ATACATACGAGTGTTGGAAT+CGG | - | chr4_2:74979755-74979774 | None:intergenic | 35.0% |
| ! | AGGTATTGTAGCAACTACTA+TGG | + | chr4_2:74980212-74980231 | Msa0622540:intron | 35.0% |
| TAAACAACATGATCGTGAAG+AGG | + | chr4_2:74980382-74980401 | Msa0622540:CDS | 35.0% | |
| AAACAACATGATCGTGAAGA+GGG | + | chr4_2:74980383-74980402 | Msa0622540:CDS | 35.0% | |
| ! | TCAACTTCTCTTGTTATGAG+TGG | + | chr4_2:74980624-74980643 | Msa0622540:three_prime_UTR | 35.0% |
| CTAACCCAACACCAAAAAAG+GGG | - | chr4_2:74979525-74979544 | None:intergenic | 40.0% | |
| ATCACCACACATGCAACAAA+CGG | - | chr4_2:74979688-74979707 | None:intergenic | 40.0% | |
| CAACTACTATGGAGAACTAG+CGG | + | chr4_2:74980223-74980242 | Msa0622540:CDS | 40.0% | |
| TGGCACCAATTCAAAGAAAC+CGG | + | chr4_2:74980298-74980317 | Msa0622540:CDS | 40.0% | |
| AATTCAAAGAAACCGGTGAC+CGG | + | chr4_2:74980305-74980324 | Msa0622540:CDS | 40.0% | |
| AACCAACCGATCGGAATATT+CGG | + | chr4_2:74980346-74980365 | Msa0622540:CDS | 40.0% | |
| ACGTAGGTACAAGCTTCTTA+AGG | + | chr4_2:74980454-74980473 | Msa0622540:CDS | 40.0% | |
| CTAACCCAACACCAAAAAAG+GGG | - | chr4_2:74979525-74979544 | None:intergenic | 40.0% | |
| ATCACCACACATGCAACAAA+CGG | - | chr4_2:74979688-74979707 | None:intergenic | 40.0% | |
| CAACTACTATGGAGAACTAG+CGG | + | chr4_2:74980223-74980242 | Msa0622540:CDS | 40.0% | |
| TGGCACCAATTCAAAGAAAC+CGG | + | chr4_2:74980298-74980317 | Msa0622540:CDS | 40.0% | |
| AATTCAAAGAAACCGGTGAC+CGG | + | chr4_2:74980305-74980324 | Msa0622540:CDS | 40.0% | |
| AACCAACCGATCGGAATATT+CGG | + | chr4_2:74980346-74980365 | Msa0622540:CDS | 40.0% | |
| ACGTAGGTACAAGCTTCTTA+AGG | + | chr4_2:74980454-74980473 | Msa0622540:CDS | 40.0% | |
| TTGAAGGTGAGAGTGAGAGA+TGG | - | chr4_2:74979590-74979609 | None:intergenic | 45.0% | |
| TGTGCAGCACACCATAAGAA+TGG | + | chr4_2:74979650-74979669 | Msa0622540:exon | 45.0% | |
| ! | CAAACCGTTTGTTGCATGTG+TGG | + | chr4_2:74979681-74979700 | Msa0622540:CDS | 45.0% |
| ! | TGTTGCATGTGTGGTGATGT+TGG | + | chr4_2:74979690-74979709 | Msa0622540:CDS | 45.0% |
| TTGCAACGGAAAAGCTTGTC+GGG | - | chr4_2:74979720-74979739 | None:intergenic | 45.0% | |
| GTTGCAACGGAAAAGCTTGT+CGG | - | chr4_2:74979721-74979740 | None:intergenic | 45.0% | |
| CGGAGATAGAACAGTGTGAT+TGG | + | chr4_2:74980243-74980262 | Msa0622540:CDS | 45.0% | |
| !! | GGTCACCGGTTTCTTTGAAT+TGG | - | chr4_2:74980306-74980325 | None:intergenic | 45.0% |
| ACCAACCGATCGGAATATTC+GGG | + | chr4_2:74980347-74980366 | Msa0622540:CDS | 45.0% | |
| TCTCACCCGAATATTCCGAT+CGG | - | chr4_2:74980355-74980374 | None:intergenic | 45.0% | |
| AAGAAGCTTGTACCTACGTG+TGG | - | chr4_2:74980453-74980472 | None:intergenic | 45.0% | |
| TTGAAGGTGAGAGTGAGAGA+TGG | - | chr4_2:74979590-74979609 | None:intergenic | 45.0% | |
| TGTGCAGCACACCATAAGAA+TGG | + | chr4_2:74979650-74979669 | Msa0622540:exon | 45.0% | |
| ! | CAAACCGTTTGTTGCATGTG+TGG | + | chr4_2:74979681-74979700 | Msa0622540:CDS | 45.0% |
| ! | TGTTGCATGTGTGGTGATGT+TGG | + | chr4_2:74979690-74979709 | Msa0622540:CDS | 45.0% |
| TTGCAACGGAAAAGCTTGTC+GGG | - | chr4_2:74979720-74979739 | None:intergenic | 45.0% | |
| GTTGCAACGGAAAAGCTTGT+CGG | - | chr4_2:74979721-74979740 | None:intergenic | 45.0% | |
| CGGAGATAGAACAGTGTGAT+TGG | + | chr4_2:74980243-74980262 | Msa0622540:CDS | 45.0% | |
| !! | GGTCACCGGTTTCTTTGAAT+TGG | - | chr4_2:74980306-74980325 | None:intergenic | 45.0% |
| ACCAACCGATCGGAATATTC+GGG | + | chr4_2:74980347-74980366 | Msa0622540:CDS | 45.0% | |
| TCTCACCCGAATATTCCGAT+CGG | - | chr4_2:74980355-74980374 | None:intergenic | 45.0% | |
| AAGAAGCTTGTACCTACGTG+TGG | - | chr4_2:74980453-74980472 | None:intergenic | 45.0% | |
| GCAGCACACCATAAGAATGG+TGG | + | chr4_2:74979653-74979672 | Msa0622540:exon | 50.0% | |
| !! | CATACGAGTGTTGGAATCGG+TGG | - | chr4_2:74979752-74979771 | None:intergenic | 50.0% |
| ACGATCTCATTTCCGGTCAC+CGG | - | chr4_2:74980320-74980339 | None:intergenic | 50.0% | |
| TGTCGCGACGATCTCATTTC+CGG | - | chr4_2:74980327-74980346 | None:intergenic | 50.0% | |
| ACCCGAATATTCCGATCGGT+TGG | - | chr4_2:74980351-74980370 | None:intergenic | 50.0% | |
| CAACATGATCGTGAAGAGGG+TGG | + | chr4_2:74980386-74980405 | Msa0622540:CDS | 50.0% | |
| AAGCTTGTACCTACGTGTGG+CGG | - | chr4_2:74980450-74980469 | None:intergenic | 50.0% | |
| GCAGCACACCATAAGAATGG+TGG | + | chr4_2:74979653-74979672 | Msa0622540:exon | 50.0% | |
| !! | CATACGAGTGTTGGAATCGG+TGG | - | chr4_2:74979752-74979771 | None:intergenic | 50.0% |
| ACGATCTCATTTCCGGTCAC+CGG | - | chr4_2:74980320-74980339 | None:intergenic | 50.0% | |
| TGTCGCGACGATCTCATTTC+CGG | - | chr4_2:74980327-74980346 | None:intergenic | 50.0% | |
| ACCCGAATATTCCGATCGGT+TGG | - | chr4_2:74980351-74980370 | None:intergenic | 50.0% | |
| CAACATGATCGTGAAGAGGG+TGG | + | chr4_2:74980386-74980405 | Msa0622540:CDS | 50.0% | |
| AAGCTTGTACCTACGTGTGG+CGG | - | chr4_2:74980450-74980469 | None:intergenic | 50.0% | |
| ! | GGTGGCGGCATTTGTTGCAA+CGG | - | chr4_2:74979734-74979753 | None:intergenic | 55.0% |
| !! | ACGAGTGTTGGAATCGGTGG+CGG | - | chr4_2:74979749-74979768 | None:intergenic | 55.0% |
| !! | TGAAGAGGGTGGCTCTGAGA+AGG | + | chr4_2:74980397-74980416 | Msa0622540:CDS | 55.0% |
| !! | GAAGAGGGTGGCTCTGAGAA+GGG | + | chr4_2:74980398-74980417 | Msa0622540:CDS | 55.0% |
| !! | AAGAGGGTGGCTCTGAGAAG+GGG | + | chr4_2:74980399-74980418 | Msa0622540:CDS | 55.0% |
| ! | GGTGGCGGCATTTGTTGCAA+CGG | - | chr4_2:74979734-74979753 | None:intergenic | 55.0% |
| !! | ACGAGTGTTGGAATCGGTGG+CGG | - | chr4_2:74979749-74979768 | None:intergenic | 55.0% |
| !! | TGAAGAGGGTGGCTCTGAGA+AGG | + | chr4_2:74980397-74980416 | Msa0622540:CDS | 55.0% |
| !! | GAAGAGGGTGGCTCTGAGAA+GGG | + | chr4_2:74980398-74980417 | Msa0622540:CDS | 55.0% |
| !! | AAGAGGGTGGCTCTGAGAAG+GGG | + | chr4_2:74980399-74980418 | Msa0622540:CDS | 55.0% |
| CGTCGCGACAACCAACCGAT+CGG | + | chr4_2:74980337-74980356 | Msa0622540:CDS | 60.0% | |
| CGTCGCGACAACCAACCGAT+CGG | + | chr4_2:74980337-74980356 | Msa0622540:CDS | 60.0% | |
| AGAGTCCTTCGCCGTCGCCA+CGG | + | chr4_2:74980423-74980442 | Msa0622540:CDS | 65.0% | |
| TACCTACGTGTGGCGGTCCG+TGG | - | chr4_2:74980443-74980462 | None:intergenic | 65.0% | |
| AGAGTCCTTCGCCGTCGCCA+CGG | + | chr4_2:74980423-74980442 | Msa0622540:CDS | 65.0% | |
| TACCTACGTGTGGCGGTCCG+TGG | - | chr4_2:74980443-74980462 | None:intergenic | 65.0% | |
| CGTGTGGCGGTCCGTGGCGA+CGG | - | chr4_2:74980437-74980456 | None:intergenic | 75.0% | |
| CGCCACGGACCGCCACACGT+AGG | + | chr4_2:74980438-74980457 | Msa0622540:CDS | 75.0% | |
| CGTGTGGCGGTCCGTGGCGA+CGG | - | chr4_2:74980437-74980456 | None:intergenic | 75.0% | |
| CGCCACGGACCGCCACACGT+AGG | + | chr4_2:74980438-74980457 | Msa0622540:CDS | 75.0% | |
| ! | GCGGTCCGTGGCGACGGCGA+AGG | - | chr4_2:74980431-74980450 | None:intergenic | 80.0% |
| ! | GCGGTCCGTGGCGACGGCGA+AGG | - | chr4_2:74980431-74980450 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 74979520 | 74980740 | 74979520 | ID=Msa0622540;Name=Msa0622540 |
| chr4_2 | mRNA | 74979520 | 74980740 | 74979520 | ID=Msa0622540-mRNA-1;Parent=Msa0622540;Name=Msa0622540-mRNA-1;_AED=0.01;_eAED=0.01;_QI=149|1|1|1|1|1|2|250|124 |
| chr4_2 | exon | 74979520 | 74979766 | 74979520 | ID=Msa0622540-mRNA-1:exon:22699;Parent=Msa0622540-mRNA-1 |
| chr4_2 | exon | 74980214 | 74980740 | 74980214 | ID=Msa0622540-mRNA-1:exon:22700;Parent=Msa0622540-mRNA-1 |
| chr4_2 | five_prime_UTR | 74979520 | 74979668 | 74979520 | ID=Msa0622540-mRNA-1:five_prime_utr;Parent=Msa0622540-mRNA-1 |
| chr4_2 | CDS | 74979669 | 74979766 | 74979669 | ID=Msa0622540-mRNA-1:cds;Parent=Msa0622540-mRNA-1 |
| chr4_2 | CDS | 74980214 | 74980490 | 74980214 | ID=Msa0622540-mRNA-1:cds;Parent=Msa0622540-mRNA-1 |
| chr4_2 | three_prime_UTR | 74980491 | 74980740 | 74980491 | ID=Msa0622540-mRNA-1:three_prime_utr;Parent=Msa0622540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
