Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0623000 | PNX99834.1 | 56.897 | 58 | 20 | 1 | 59 | 116 | 1 | 53 | 2.75e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0623000 | A0A2K3N9Z5 | 56.897 | 58 | 20 | 1 | 59 | 116 | 1 | 53 | 1.31e-12 | 67.8 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0500520 | Msa0623000 | 0.807038 | 6.143737e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0623000 | MtrunA17_Chr3g0125141 | 55.556 | 63 | 27 | 1 | 42 | 103 | 1 | 63 | 1.18e-15 | 66.2 |
| Msa0623000 | MtrunA17_Chr1g0197101 | 71.111 | 45 | 9 | 1 | 9 | 53 | 55 | 95 | 2.38e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 94 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCCAAATAATTGAAATTT+TGG | 0.047025 | 4_3:+171874 | None:intergenic |
| ATCCCAAAATTTCAATTATT+TGG | 0.074593 | 4_3:-171877 | Msa0623000:five_prime_UTR |
| GTTTATTTCATTCGGAAAAT+TGG | 0.104151 | 4_3:-168216 | Msa0623000:three_prime_UTR |
| CTACAACTCAATTGAAATTC+TGG | 0.219729 | 4_3:-168679 | Msa0623000:three_prime_UTR |
| AAGACTCAGGGATGTCTTTA+TGG | 0.246681 | 4_3:-168638 | Msa0623000:three_prime_UTR |
| CAGAATTTCAATTGAGTTGT+AGG | 0.259880 | 4_3:+168680 | None:intergenic |
| GCTAATAAGCGCACACGATT+TGG | 0.265270 | 4_3:-168441 | Msa0623000:three_prime_UTR |
| CAAGGCTGCTGTGATTATAT+TGG | 0.287750 | 4_3:-170784 | Msa0623000:CDS |
| AGATTAGGACACATTCTATT+AGG | 0.291663 | 4_3:-170836 | Msa0623000:CDS |
| ATTTCTGTCAATAGGAGTTT+TGG | 0.293765 | 4_3:+171840 | None:intergenic |
| TTTATTTCATTCGGAAAATT+GGG | 0.295943 | 4_3:-168215 | Msa0623000:three_prime_UTR |
| GATGCAGGGCAGCTGGATAC+AGG | 0.334750 | 4_3:-168805 | Msa0623000:CDS |
| AAATTCTGGGCTGAATTGGC+TGG | 0.336987 | 4_3:-168665 | Msa0623000:three_prime_UTR |
| CTGTTCTGAGTGAATAAAAT+AGG | 0.339761 | 4_3:+171794 | None:intergenic |
| TCTTTATGGTACTTGTGATA+TGG | 0.350156 | 4_3:-168624 | Msa0623000:three_prime_UTR |
| GGATGCAGGGGACGAGATGC+AGG | 0.353260 | 4_3:-168820 | Msa0623000:CDS |
| TCTTGAGTAGGAAACATATA+AGG | 0.375208 | 4_3:-168751 | Msa0623000:three_prime_UTR |
| GCAGAAACTTGGCTACTATA+TGG | 0.376503 | 4_3:+168549 | None:intergenic |
| ATATTAATGTTTATTTCATT+CGG | 0.380924 | 4_3:-168224 | Msa0623000:three_prime_UTR |
| AATGAAGGGGAGCGGGATGC+AGG | 0.385018 | 4_3:-168834 | Msa0623000:CDS |
| ACGATGTCGGCCACCCTTGA+TGG | 0.396044 | 4_3:+168384 | None:intergenic |
| ATTGAAATTCTGGGCTGAAT+TGG | 0.403644 | 4_3:-168669 | Msa0623000:three_prime_UTR |
| TTGTGAGAAAAGAGAACAAA+TGG | 0.414854 | 4_3:-171598 | Msa0623000:exon |
| GGAAACATATAAGGAGAAGA+TGG | 0.415058 | 4_3:-168742 | Msa0623000:three_prime_UTR |
| GAATGATATGGTTGGGCAAT+CGG | 0.416206 | 4_3:+171727 | None:intergenic |
| GGGACGAGATGCAGGGCAGC+TGG | 0.421743 | 4_3:-168812 | Msa0623000:CDS |
| TACAACTCAATTGAAATTCT+GGG | 0.437150 | 4_3:-168678 | Msa0623000:three_prime_UTR |
| GATCGAAGAAAAGAATGATA+TGG | 0.443057 | 4_3:+171715 | None:intergenic |
| TTTCAGGATTCTCGTGAGAA+AGG | 0.449070 | 4_3:-171625 | Msa0623000:five_prime_UTR |
| AGAAGGAAGGCATCTGATAA+TGG | 0.449114 | 4_3:-168719 | Msa0623000:three_prime_UTR |
| ATGGAGATACATGCGACTGC+TGG | 0.450706 | 4_3:+168568 | None:intergenic |
| CTGCCATCTGTGCAGCAATC+CGG | 0.458112 | 4_3:+168527 | None:intergenic |
| GAATATTGATGAGACTTTCA+AGG | 0.458436 | 4_3:-170802 | Msa0623000:CDS |
| AAGAAAAGAATGATATGGTT+GGG | 0.460323 | 4_3:+171720 | None:intergenic |
| CTGCCGGATTGCTGCACAGA+TGG | 0.465200 | 4_3:-168530 | Msa0623000:three_prime_UTR |
| ATGGCAAAGCGCTACAAGCC+AGG | 0.468440 | 4_3:-168605 | Msa0623000:three_prime_UTR |
| GGAGTGACAACGGAAGGAAT+TGG | 0.468989 | 4_3:-168420 | Msa0623000:three_prime_UTR |
| AATTCTGGGCTGAATTGGCT+GGG | 0.469850 | 4_3:-168664 | Msa0623000:three_prime_UTR |
| TCTGTGGACCTTTGACCTTA+CGG | 0.478369 | 4_3:+168982 | None:intergenic |
| TCAGAGATGTCATCATAGTC+TGG | 0.479204 | 4_3:+168355 | None:intergenic |
| TTCAGGATTCTCGTGAGAAA+GGG | 0.487517 | 4_3:-171624 | Msa0623000:five_prime_UTR |
| GCAGCAATCCGGCAGAAACT+TGG | 0.488047 | 4_3:+168538 | None:intergenic |
| GATGTAAATCAGATGAATGA+AGG | 0.491907 | 4_3:-168849 | Msa0623000:CDS |
| CTGGGTAGGGATGATGCACC+TGG | 0.492746 | 4_3:+168587 | None:intergenic |
| TCACTTTGATCAATATCGTC+AGG | 0.494553 | 4_3:-170760 | Msa0623000:intron |
| TGAAGGGGAGCGGGATGCAG+GGG | 0.501360 | 4_3:-168832 | Msa0623000:CDS |
| CTGAGTGTTACTTCCATCAA+GGG | 0.514566 | 4_3:-168397 | Msa0623000:three_prime_UTR |
| GCTGAGTGTTACTTCCATCA+AGG | 0.518355 | 4_3:-168398 | Msa0623000:three_prime_UTR |
| GAAGAAAAGAATGATATGGT+TGG | 0.522034 | 4_3:+171719 | None:intergenic |
| AATAACTTTCATAACTGCAA+TGG | 0.524765 | 4_3:+168160 | None:intergenic |
| TCAGATGAATGAAGGGGAGC+GGG | 0.530853 | 4_3:-168841 | Msa0623000:CDS |
| ATGAAGGGGAGCGGGATGCA+GGG | 0.531337 | 4_3:-168833 | Msa0623000:CDS |
| TGGAGATACATGCGACTGCT+GGG | 0.532764 | 4_3:+168569 | None:intergenic |
| AAGGAGAAGATGGAGAAGGA+AGG | 0.533403 | 4_3:-168732 | Msa0623000:three_prime_UTR |
| GTCGCTTGTTTCAACTTATG+CGG | 0.544680 | 4_3:+168939 | None:intergenic |
| GATACATGCGACTGCTGGGT+AGG | 0.544893 | 4_3:+168573 | None:intergenic |
| ACGCTACAACACCATGGCAG+TGG | 0.545516 | 4_3:-168872 | Msa0623000:CDS |
| CGCTACAACACCATGGCAGT+GGG | 0.546579 | 4_3:-168871 | Msa0623000:CDS |
| ATGTAAATCAGATGAATGAA+GGG | 0.559122 | 4_3:-168848 | Msa0623000:CDS |
| TATAGTAGCCAAGTTTCTGC+CGG | 0.562202 | 4_3:-168546 | Msa0623000:three_prime_UTR |
| ATCAGATGAATGAAGGGGAG+CGG | 0.562953 | 4_3:-168842 | Msa0623000:CDS |
| ATACATGCGACTGCTGGGTA+GGG | 0.563394 | 4_3:+168574 | None:intergenic |
| AAAGAAAACCGTAAGGTCAA+AGG | 0.566284 | 4_3:-168990 | Msa0623000:CDS |
| AGTTGTAGGATCAACCTCCT+TGG | 0.575331 | 4_3:+168694 | None:intergenic |
| AGATGTCATCATAGTCTGGA+TGG | 0.576610 | 4_3:+168359 | None:intergenic |
| ATATAAGGAGAAGATGGAGA+AGG | 0.579875 | 4_3:-168736 | Msa0623000:three_prime_UTR |
| TATGGTTGGGCAATCGGAGT+AGG | 0.580585 | 4_3:+171733 | None:intergenic |
| GATGCAGGGGACGAGATGCA+GGG | 0.582931 | 4_3:-168819 | Msa0623000:CDS |
| TTATTTCATTCGGAAAATTG+GGG | 0.586712 | 4_3:-168214 | Msa0623000:three_prime_UTR |
| GGACGGTGGGCAATCAGAGA+TGG | 0.587086 | 4_3:+171754 | None:intergenic |
| ATGCAGGGCAGCTGGATACA+GGG | 0.592695 | 4_3:-168804 | Msa0623000:CDS |
| GGCAATCGGAGTAGGACGGT+GGG | 0.593012 | 4_3:+171741 | None:intergenic |
| CGATTTGGAGTGACAACGGA+AGG | 0.593203 | 4_3:-168426 | Msa0623000:three_prime_UTR |
| GGGCAATCGGAGTAGGACGG+TGG | 0.593669 | 4_3:+171740 | None:intergenic |
| CTCTACGCTGTCAACAAAGT+CGG | 0.595260 | 4_3:+168324 | None:intergenic |
| ATTCTGGGCTGAATTGGCTG+GGG | 0.600094 | 4_3:-168663 | Msa0623000:three_prime_UTR |
| GAAGAGAGCAAATGCAGCAG+AGG | 0.600570 | 4_3:-168499 | Msa0623000:three_prime_UTR |
| GCTGTCAACAAAGTCGGCAT+CGG | 0.608604 | 4_3:+168330 | None:intergenic |
| GTTGGGCAATCGGAGTAGGA+CGG | 0.612804 | 4_3:+171737 | None:intergenic |
| TGATGCTCGAGTTGCACGTG+AGG | 0.614438 | 4_3:-168475 | Msa0623000:three_prime_UTR |
| AGTCTGGATGGTGACGATGT+CGG | 0.617281 | 4_3:+168371 | None:intergenic |
| GGCTCCTAAAGAAAACCGTA+AGG | 0.618595 | 4_3:-168997 | Msa0623000:CDS |
| TGATTTACATCCCACTGCCA+TGG | 0.619006 | 4_3:+168861 | None:intergenic |
| TGCACGTGAGGAATATTGCA+AGG | 0.626270 | 4_3:-168463 | Msa0623000:three_prime_UTR |
| CGACTTTGTTGACAGCGTAG+AGG | 0.628718 | 4_3:-168323 | Msa0623000:three_prime_UTR |
| ACAAAACATAAAACATAGTG+CGG | 0.635285 | 4_3:+168269 | None:intergenic |
| TTCTGGGCTGAATTGGCTGG+GGG | 0.641385 | 4_3:-168662 | Msa0623000:three_prime_UTR |
| CACACGATTTGGAGTGACAA+CGG | 0.658561 | 4_3:-168430 | Msa0623000:three_prime_UTR |
| AGTGTTACTTCCATCAAGGG+TGG | 0.662451 | 4_3:-168394 | Msa0623000:three_prime_UTR |
| GGCATCTGATAATGGCACCA+AGG | 0.663152 | 4_3:-168711 | Msa0623000:three_prime_UTR |
| TGTAAATCAGATGAATGAAG+GGG | 0.684019 | 4_3:-168847 | Msa0623000:CDS |
| ATCTGATAATGGCACCAAGG+AGG | 0.695887 | 4_3:-168708 | Msa0623000:three_prime_UTR |
| GTGATGACGCTACAACACCA+TGG | 0.716250 | 4_3:-168878 | Msa0623000:CDS |
| GTTGTAGCGTCATCACTGAG+AGG | 0.716312 | 4_3:+168885 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATCATTAAATAATAACAA+TGG | + | chr4_3:170058-170077 | None:intergenic | 10.0% |
| !! | ATATTAATGTTTATTTCATT+CGG | - | chr4_3:171850-171869 | Msa0623000:five_prime_UTR | 10.0% |
| !!! | TGTAATTTTATGAATATGAT+AGG | - | chr4_3:169062-169081 | Msa0623000:intron | 15.0% |
| !! | AATAACATAATCTATAAAGA+TGG | + | chr4_3:169936-169955 | None:intergenic | 15.0% |
| !!! | CTTTATAGATTATGTTATTT+AGG | - | chr4_3:169937-169956 | Msa0623000:intron | 15.0% |
| !!! | TTTTGACAAATAATTATATC+AGG | - | chr4_3:170159-170178 | Msa0623000:intron | 15.0% |
| !! | ATATATTTATTACTAAACAC+AGG | + | chr4_3:170840-170859 | None:intergenic | 15.0% |
| !!! | AATAATTGAAATTTTGGGAT+TGG | + | chr4_3:168197-168216 | None:intergenic | 20.0% |
| !! | ATCCCAAAATTTCAATTATT+TGG | - | chr4_3:168197-168216 | Msa0623000:three_prime_UTR | 20.0% |
| !!! | AGCCAAATAATTGAAATTTT+GGG | + | chr4_3:168202-168221 | None:intergenic | 20.0% |
| !!! | TATGTTTTATTTCTGTCAAT+AGG | + | chr4_3:168245-168264 | None:intergenic | 20.0% |
| !! | AGACTTACAAAAATTGAAAA+TGG | + | chr4_3:168507-168526 | None:intergenic | 20.0% |
| !! | GCTTATACAAAAACAATTTA+AGG | + | chr4_3:168815-168834 | None:intergenic | 20.0% |
| !! | TATACTACAGTATTCAATAA+AGG | - | chr4_3:169020-169039 | Msa0623000:intron | 20.0% |
| !!! | TGTGATTTATTTTTGGATTT+GGG | - | chr4_3:169108-169127 | Msa0623000:intron | 20.0% |
| !!! | AAAGTTGGATTTTTTTGATT+TGG | - | chr4_3:169208-169227 | Msa0623000:intron | 20.0% |
| !!! | AAGTTGGATTTTTTTGATTT+GGG | - | chr4_3:169209-169228 | Msa0623000:intron | 20.0% |
| !!! | TGATAATTATCATGGTTTTA+CGG | - | chr4_3:169343-169362 | Msa0623000:intron | 20.0% |
| !! | ATATCACTTGAGTAAAAATA+TGG | + | chr4_3:170414-170433 | None:intergenic | 20.0% |
| !!! | TGATTTATGTGTTTTTGTTT+TGG | - | chr4_3:170909-170928 | Msa0623000:intron | 20.0% |
| !!! | CTATATTCTCTTATGTTTTT+TGG | - | chr4_3:171045-171064 | Msa0623000:intron | 20.0% |
| !! | TTTATTTCATTCGGAAAATT+GGG | - | chr4_3:171859-171878 | Msa0623000:five_prime_UTR | 20.0% |
| !! | GAGCCAAATAATTGAAATTT+TGG | + | chr4_3:168203-168222 | None:intergenic | 25.0% |
| ! | AAGAAAAGAATGATATGGTT+GGG | + | chr4_3:168357-168376 | None:intergenic | 25.0% |
| ! | ATTCCATACATGTATATTTG+TGG | - | chr4_3:168560-168579 | Msa0623000:three_prime_UTR | 25.0% |
| ! | CAAATTATTCAATGTGATTG+TGG | - | chr4_3:168682-168701 | Msa0623000:three_prime_UTR | 25.0% |
| ! | CTATACGAACAGATTAAATA+TGG | - | chr4_3:168791-168810 | Msa0623000:exon | 25.0% |
| !! | GCTATAATCTGTTTTCATAA+TGG | - | chr4_3:168833-168852 | Msa0623000:CDS | 25.0% |
| ! | CCAAAAATAAATCACAGATT+GGG | + | chr4_3:169104-169123 | None:intergenic | 25.0% |
| ! | TCCAAAAATAAATCACAGAT+TGG | + | chr4_3:169105-169124 | None:intergenic | 25.0% |
| !!! | CTGTGATTTATTTTTGGATT+TGG | - | chr4_3:169107-169126 | Msa0623000:intron | 25.0% |
| !!! | TTATTTTTGGATTTGGGTTT+TGG | - | chr4_3:169114-169133 | Msa0623000:intron | 25.0% |
| !!! | GATTTGTGGTTTTTAAAAGT+TGG | - | chr4_3:169193-169212 | Msa0623000:intron | 25.0% |
| !!! | GGTTAGTTTGATAATTATCA+TGG | - | chr4_3:169335-169354 | Msa0623000:intron | 25.0% |
| !!! | GATAATTATCATGGTTTTAC+GGG | - | chr4_3:169344-169363 | Msa0623000:intron | 25.0% |
| ! | TTGTAAGAAACATATCATGA+AGG | + | chr4_3:169408-169427 | None:intergenic | 25.0% |
| !! | TGTTCATTTTCAATCACTAA+GGG | - | chr4_3:169497-169516 | Msa0623000:intron | 25.0% |
| ! | ATAGCGGTTTAATGTTAAAA+TGG | - | chr4_3:169573-169592 | Msa0623000:intron | 25.0% |
| ! | GTTATAACTTTCTTAATGCA+TGG | - | chr4_3:169610-169629 | Msa0623000:intron | 25.0% |
| ! | ATTTCAGTTAAAGATCATCA+TGG | + | chr4_3:169688-169707 | None:intergenic | 25.0% |
| !! | ATCTTTTCTTTATCTGATTC+AGG | - | chr4_3:169847-169866 | Msa0623000:intron | 25.0% |
| ! | ATATTGCACATATATAGACT+AGG | - | chr4_3:170074-170093 | Msa0623000:intron | 25.0% |
| ! | ACATATATAGACTAGGTATA+TGG | - | chr4_3:170081-170100 | Msa0623000:intron | 25.0% |
| !!! | AATTTAGTTCTTACAATGCT+TGG | - | chr4_3:170106-170125 | Msa0623000:intron | 25.0% |
| !! | TTCATTATGCCTTTATTTGA+TGG | - | chr4_3:170182-170201 | Msa0623000:intron | 25.0% |
| ! | TTTCACTTTCCATCAAATAA+AGG | + | chr4_3:170194-170213 | None:intergenic | 25.0% |
| ! | TAAATAACAACCATTTCACT+TGG | - | chr4_3:170293-170312 | Msa0623000:intron | 25.0% |
| ! | AAATAACAACCATTTCACTT+GGG | - | chr4_3:170294-170313 | Msa0623000:intron | 25.0% |
| ! | ATAGAAACTACTACCAAATT+CGG | + | chr4_3:170376-170395 | None:intergenic | 25.0% |
| ! | TTGAGTAAAAATATGGTATC+AGG | + | chr4_3:170407-170426 | None:intergenic | 25.0% |
| !!! | TTATGTGTTTTTGTTTTGGT+TGG | - | chr4_3:170913-170932 | Msa0623000:intron | 25.0% |
| ! | TTAGAGCAATAATTAGTGTA+TGG | + | chr4_3:170972-170991 | None:intergenic | 25.0% |
| !!! | TATGCAAACTTTAAAACAGA+TGG | + | chr4_3:170999-171018 | None:intergenic | 25.0% |
| ! | ATGTAAATCAGATGAATGAA+GGG | - | chr4_3:171226-171245 | Msa0623000:intron | 25.0% |
| ! | TACAACTCAATTGAAATTCT+GGG | - | chr4_3:171396-171415 | Msa0623000:intron | 25.0% |
| ! | ACAAAACATAAAACATAGTG+CGG | + | chr4_3:171808-171827 | None:intergenic | 25.0% |
| ! | GTTTATTTCATTCGGAAAAT+TGG | - | chr4_3:171858-171877 | Msa0623000:five_prime_UTR | 25.0% |
| ! | TTATTTCATTCGGAAAATTG+GGG | - | chr4_3:171860-171879 | Msa0623000:five_prime_UTR | 25.0% |
| !! | AGGAGTTTTGGCAAAAAAAT+TGG | + | chr4_3:168225-168244 | None:intergenic | 30.0% |
| ! | ATTTCTGTCAATAGGAGTTT+TGG | + | chr4_3:168237-168256 | None:intergenic | 30.0% |
| ! | CTGTTCTGAGTGAATAAAAT+AGG | + | chr4_3:168283-168302 | None:intergenic | 30.0% |
| GAAGAAAAGAATGATATGGT+TGG | + | chr4_3:168358-168377 | None:intergenic | 30.0% | |
| GATCGAAGAAAAGAATGATA+TGG | + | chr4_3:168362-168381 | None:intergenic | 30.0% | |
| TTGTGAGAAAAGAGAACAAA+TGG | - | chr4_3:168476-168495 | Msa0623000:three_prime_UTR | 30.0% | |
| TTTGTAATTACCGATGAAGA+AGG | + | chr4_3:168535-168554 | None:intergenic | 30.0% | |
| CAACCACAAATATACATGTA+TGG | + | chr4_3:168566-168585 | None:intergenic | 30.0% | |
| CATACATGTATATTTGTGGT+TGG | - | chr4_3:168564-168583 | Msa0623000:three_prime_UTR | 30.0% | |
| ! | ATGTATATTTGTGGTTGGTA+GGG | - | chr4_3:168569-168588 | Msa0623000:three_prime_UTR | 30.0% |
| ! | TTTTCAATTGATTGTGATCG+TGG | - | chr4_3:168614-168633 | Msa0623000:three_prime_UTR | 30.0% |
| CAAATTGTTCAATGTGATTG+TGG | - | chr4_3:168653-168672 | Msa0623000:three_prime_UTR | 30.0% | |
| GAATACTGTAGTATACTTGT+TGG | + | chr4_3:169015-169034 | None:intergenic | 30.0% | |
| !! | CCCAATCTGTGATTTATTTT+TGG | - | chr4_3:169101-169120 | Msa0623000:intron | 30.0% |
| !! | GTCAAGTAGTGTTGAATTTT+GGG | - | chr4_3:169150-169169 | Msa0623000:intron | 30.0% |
| !! | TCAAGTAGTGTTGAATTTTG+GGG | - | chr4_3:169151-169170 | Msa0623000:intron | 30.0% |
| AGATTAGGACACATTCTATT+AGG | - | chr4_3:169238-169257 | Msa0623000:intron | 30.0% | |
| GAATATTGATGAGACTTTCA+AGG | - | chr4_3:169272-169291 | Msa0623000:intron | 30.0% | |
| ! | CTGTTCATTTTCAATCACTA+AGG | - | chr4_3:169496-169515 | Msa0623000:intron | 30.0% |
| TTCACTTTGCAAATTGCAAT+TGG | + | chr4_3:169740-169759 | None:intergenic | 30.0% | |
| !!! | AGATGTAACTTAGTTTTGTC+TGG | - | chr4_3:169811-169830 | Msa0623000:intron | 30.0% |
| TAATCTATAAAGATGGTGAC+TGG | + | chr4_3:169929-169948 | None:intergenic | 30.0% | |
| GCTTTCATATGTTGAATTCT+AGG | - | chr4_3:170256-170275 | Msa0623000:intron | 30.0% | |
| ATGAATGATTGAAGTCCTTA+AGG | - | chr4_3:170936-170955 | Msa0623000:intron | 30.0% | |
| !!! | TATGTTTTTTGGACAGATCA+TGG | - | chr4_3:171056-171075 | Msa0623000:intron | 30.0% |
| GATGTAAATCAGATGAATGA+AGG | - | chr4_3:171225-171244 | Msa0623000:intron | 30.0% | |
| TGTAAATCAGATGAATGAAG+GGG | - | chr4_3:171227-171246 | Msa0623000:intron | 30.0% | |
| !! | ATGTTTGTTTTCTCTTGAGT+AGG | - | chr4_3:171311-171330 | Msa0623000:intron | 30.0% |
| TCTTGAGTAGGAAACATATA+AGG | - | chr4_3:171323-171342 | Msa0623000:intron | 30.0% | |
| ! | CAGAATTTCAATTGAGTTGT+AGG | + | chr4_3:171397-171416 | None:intergenic | 30.0% |
| CTACAACTCAATTGAAATTC+TGG | - | chr4_3:171395-171414 | Msa0623000:intron | 30.0% | |
| TCTTTATGGTACTTGTGATA+TGG | - | chr4_3:171450-171469 | Msa0623000:intron | 30.0% | |
| CATGTATATTTGTGGTTGGT+AGG | - | chr4_3:168568-168587 | Msa0623000:three_prime_UTR | 35.0% | |
| TTATTCAATGTGATTGTGGC+TGG | - | chr4_3:168686-168705 | Msa0623000:three_prime_UTR | 35.0% | |
| TCATTATCGTGACAAACACT+TGG | - | chr4_3:168755-168774 | Msa0623000:three_prime_UTR | 35.0% | |
| !!! | GGGTTTTGGTTGATTTGATT+TGG | - | chr4_3:169128-169147 | Msa0623000:intron | 35.0% |
| !! | GGTCAAGTAGTGTTGAATTT+TGG | - | chr4_3:169149-169168 | Msa0623000:intron | 35.0% |
| TCACTTTGATCAATATCGTC+AGG | - | chr4_3:169314-169333 | Msa0623000:intron | 35.0% | |
| TCACTAAGGGTCTAAACTAT+AGG | - | chr4_3:169510-169529 | Msa0623000:intron | 35.0% | |
| CACTAAGGGTCTAAACTATA+GGG | - | chr4_3:169511-169530 | Msa0623000:intron | 35.0% | |
| GTCGAATGCTCTAATTATAG+CGG | - | chr4_3:169557-169576 | Msa0623000:intron | 35.0% | |
| ATAAAGATGGTGACTGGTAA+GGG | + | chr4_3:169923-169942 | None:intergenic | 35.0% | |
| TATAAAGATGGTGACTGGTA+AGG | + | chr4_3:169924-169943 | None:intergenic | 35.0% | |
| CAATGCTTGGAAAATCTTTC+TGG | - | chr4_3:170119-170138 | Msa0623000:intron | 35.0% | |
| ! | AGACATTCCTTTTCCGAATT+TGG | - | chr4_3:170360-170379 | Msa0623000:intron | 35.0% |
| ACTACTACCAAATTCGGAAA+AGG | + | chr4_3:170370-170389 | None:intergenic | 35.0% | |
| ATTAGCACTACAAGCTCAAT+TGG | + | chr4_3:170779-170798 | None:intergenic | 35.0% | |
| CTGAAGCATAAGAACAAGTA+TGG | + | chr4_3:170809-170828 | None:intergenic | 35.0% | |
| ATTACTAAACACAGGCTCAA+GGG | + | chr4_3:170832-170851 | None:intergenic | 35.0% | |
| TATTACTAAACACAGGCTCA+AGG | + | chr4_3:170833-170852 | None:intergenic | 35.0% | |
| AGATGAGATGAAATCGACAT+AGG | - | chr4_3:170885-170904 | Msa0623000:intron | 35.0% | |
| ! | TTGACCTTACGGTTTTCTTT+AGG | + | chr4_3:171084-171103 | None:intergenic | 35.0% |
| AAAGAAAACCGTAAGGTCAA+AGG | - | chr4_3:171084-171103 | Msa0623000:intron | 35.0% | |
| !!! | ATCATACGCTTTTTCATCTG+TGG | + | chr4_3:171111-171130 | None:intergenic | 35.0% |
| GGAAACATATAAGGAGAAGA+TGG | - | chr4_3:171332-171351 | Msa0623000:intron | 35.0% | |
| ATATAAGGAGAAGATGGAGA+AGG | - | chr4_3:171338-171357 | Msa0623000:intron | 35.0% | |
| ATTGAAATTCTGGGCTGAAT+TGG | - | chr4_3:171405-171424 | Msa0623000:intron | 35.0% | |
| TTGGGATTGGAGAAAAAGTG+TGG | + | chr4_3:168184-168203 | None:intergenic | 40.0% | |
| GAATGATATGGTTGGGCAAT+CGG | + | chr4_3:168350-168369 | None:intergenic | 40.0% | |
| TTTCAGGATTCTCGTGAGAA+AGG | - | chr4_3:168449-168468 | Msa0623000:three_prime_UTR | 40.0% | |
| TTCAGGATTCTCGTGAGAAA+GGG | - | chr4_3:168450-168469 | Msa0623000:three_prime_UTR | 40.0% | |
| AGTCTTCTCACCTTCTTCAT+CGG | - | chr4_3:168522-168541 | Msa0623000:three_prime_UTR | 40.0% | |
| ATTGTGATCGTGGCTTATTG+TGG | - | chr4_3:168624-168643 | Msa0623000:three_prime_UTR | 40.0% | |
| !! | CAGATTGGGCTTTGAAAAAC+AGG | + | chr4_3:169090-169109 | None:intergenic | 40.0% |
| !! | GTTGAATTTTGGGGATCTGA+CGG | - | chr4_3:169160-169179 | Msa0623000:intron | 40.0% |
| !! | TTGAATTTTGGGGATCTGAC+GGG | - | chr4_3:169161-169180 | Msa0623000:intron | 40.0% |
| ! | TGATTTGGGTGTTGCAGATT+AGG | - | chr4_3:169223-169242 | Msa0623000:intron | 40.0% |
| CAAGGCTGCTGTGATTATAT+TGG | - | chr4_3:169290-169309 | Msa0623000:intron | 40.0% | |
| TACCTTGAGAGACCTAATAG+AGG | - | chr4_3:169535-169554 | Msa0623000:intron | 40.0% | |
| ! | TAGAGCATTCGACCTCTATT+AGG | + | chr4_3:169550-169569 | None:intergenic | 40.0% |
| ATGATAGTAGTCAGCATTGC+AGG | + | chr4_3:169652-169671 | None:intergenic | 40.0% | |
| TGCAGTCCAGTTGACTAAAT+GGG | + | chr4_3:169781-169800 | None:intergenic | 40.0% | |
| ATGCAGTCCAGTTGACTAAA+TGG | + | chr4_3:169782-169801 | None:intergenic | 40.0% | |
| ! | ATTACAGAAGCGCATGAGTT+AGG | + | chr4_3:169980-169999 | None:intergenic | 40.0% |
| AAGAGCAAAAGCTCTTACAC+AGG | - | chr4_3:170234-170253 | Msa0623000:intron | 40.0% | |
| ! | GAGATTTTGCCCAAGTGAAA+TGG | + | chr4_3:170306-170325 | None:intergenic | 40.0% |
| TGTGCATTCAGCACTACTAA+AGG | - | chr4_3:170468-170487 | Msa0623000:intron | 40.0% | |
| GTTTCACAACAAGCACACTA+AGG | - | chr4_3:170595-170614 | Msa0623000:intron | 40.0% | |
| AGGAACAGAGGATTTCTCTT+TGG | - | chr4_3:170615-170634 | Msa0623000:intron | 40.0% | |
| ! | CAGAGGATTTCTCTTTGGAA+AGG | - | chr4_3:170620-170639 | Msa0623000:intron | 40.0% |
| TATGGCGTACATGTTCCTTA+AGG | + | chr4_3:170954-170973 | None:intergenic | 40.0% | |
| GTCGCTTGTTTCAACTTATG+CGG | + | chr4_3:171138-171157 | None:intergenic | 40.0% | |
| !! | AGAAGGAAGGCATCTGATAA+TGG | - | chr4_3:171355-171374 | Msa0623000:intron | 40.0% |
| AAGACTCAGGGATGTCTTTA+TGG | - | chr4_3:171436-171455 | Msa0623000:intron | 40.0% | |
| GCAGAAACTTGGCTACTATA+TGG | + | chr4_3:171528-171547 | None:intergenic | 40.0% | |
| TATAGTAGCCAAGTTTCTGC+CGG | - | chr4_3:171528-171547 | Msa0623000:intron | 40.0% | |
| !! | CTGAGTGTTACTTCCATCAA+GGG | - | chr4_3:171677-171696 | Msa0623000:five_prime_UTR | 40.0% |
| AGATGTCATCATAGTCTGGA+TGG | + | chr4_3:171718-171737 | None:intergenic | 40.0% | |
| TCAGAGATGTCATCATAGTC+TGG | + | chr4_3:171722-171741 | None:intergenic | 40.0% | |
| ! | TCTTTTCTTCGATCACCCAC+CGG | - | chr4_3:168368-168387 | Msa0623000:three_prime_UTR | 45.0% |
| CTCTCTCTCTCTTCGATTTC+AGG | - | chr4_3:168433-168452 | Msa0623000:three_prime_UTR | 45.0% | |
| ! | ACGGGTGTTTTGTGGATTTG+TGG | - | chr4_3:169179-169198 | Msa0623000:intron | 45.0% |
| GACCTCTATTAGGTCTCTCA+AGG | + | chr4_3:169540-169559 | None:intergenic | 45.0% | |
| TCCAGTCCCATTTAGTCAAC+TGG | - | chr4_3:169772-169791 | Msa0623000:intron | 45.0% | |
| TCCAGTTGACTAAATGGGAC+TGG | + | chr4_3:169776-169795 | None:intergenic | 45.0% | |
| ! | TGAAATAGCTCTGCCAGTTC+AGG | - | chr4_3:170209-170228 | Msa0623000:intron | 45.0% |
| ! | GAAATAGCTCTGCCAGTTCA+GGG | - | chr4_3:170210-170229 | Msa0623000:intron | 45.0% |
| ! | CTTTTGCTCTTTCCCTGAAC+TGG | + | chr4_3:170225-170244 | None:intergenic | 45.0% |
| ACAAGCACACTAAGGAACAG+AGG | - | chr4_3:170603-170622 | Msa0623000:intron | 45.0% | |
| GGCTCCTAAAGAAAACCGTA+AGG | - | chr4_3:171077-171096 | Msa0623000:intron | 45.0% | |
| TCTGTGGACCTTTGACCTTA+CGG | + | chr4_3:171095-171114 | None:intergenic | 45.0% | |
| TGATTTACATCCCACTGCCA+TGG | + | chr4_3:171216-171235 | None:intergenic | 45.0% | |
| ATCAGATGAATGAAGGGGAG+CGG | - | chr4_3:171232-171251 | Msa0623000:intron | 45.0% | |
| AAGGAGAAGATGGAGAAGGA+AGG | - | chr4_3:171342-171361 | Msa0623000:intron | 45.0% | |
| !! | ATCTGATAATGGCACCAAGG+AGG | - | chr4_3:171366-171385 | Msa0623000:intron | 45.0% |
| AGTTGTAGGATCAACCTCCT+TGG | + | chr4_3:171383-171402 | None:intergenic | 45.0% | |
| AAATTCTGGGCTGAATTGGC+TGG | - | chr4_3:171409-171428 | Msa0623000:intron | 45.0% | |
| AATTCTGGGCTGAATTGGCT+GGG | - | chr4_3:171410-171429 | Msa0623000:intron | 45.0% | |
| TGCACGTGAGGAATATTGCA+AGG | - | chr4_3:171611-171630 | Msa0623000:five_prime_UTR | 45.0% | |
| GCTAATAAGCGCACACGATT+TGG | - | chr4_3:171633-171652 | Msa0623000:five_prime_UTR | 45.0% | |
| ! | CACACGATTTGGAGTGACAA+CGG | - | chr4_3:171644-171663 | Msa0623000:five_prime_UTR | 45.0% |
| !! | GCTGAGTGTTACTTCCATCA+AGG | - | chr4_3:171676-171695 | Msa0623000:five_prime_UTR | 45.0% |
| !! | AGTGTTACTTCCATCAAGGG+TGG | - | chr4_3:171680-171699 | Msa0623000:five_prime_UTR | 45.0% |
| CTCTACGCTGTCAACAAAGT+CGG | + | chr4_3:171753-171772 | None:intergenic | 45.0% | |
| TATGGTTGGGCAATCGGAGT+AGG | + | chr4_3:168344-168363 | None:intergenic | 50.0% | |
| GTTGTAGCGTCATCACTGAG+AGG | + | chr4_3:171192-171211 | None:intergenic | 50.0% | |
| ! | GTGATGACGCTACAACACCA+TGG | - | chr4_3:171196-171215 | Msa0623000:intron | 50.0% |
| TCAGATGAATGAAGGGGAGC+GGG | - | chr4_3:171233-171252 | Msa0623000:intron | 50.0% | |
| !! | GGCATCTGATAATGGCACCA+AGG | - | chr4_3:171363-171382 | Msa0623000:intron | 50.0% |
| ATTCTGGGCTGAATTGGCTG+GGG | - | chr4_3:171411-171430 | Msa0623000:intron | 50.0% | |
| ATACATGCGACTGCTGGGTA+GGG | + | chr4_3:171503-171522 | None:intergenic | 50.0% | |
| TGGAGATACATGCGACTGCT+GGG | + | chr4_3:171508-171527 | None:intergenic | 50.0% | |
| ATGGAGATACATGCGACTGC+TGG | + | chr4_3:171509-171528 | None:intergenic | 50.0% | |
| GAAGAGAGCAAATGCAGCAG+AGG | - | chr4_3:171575-171594 | Msa0623000:intron | 50.0% | |
| ! | CGATTTGGAGTGACAACGGA+AGG | - | chr4_3:171648-171667 | Msa0623000:five_prime_UTR | 50.0% |
| GGAGTGACAACGGAAGGAAT+TGG | - | chr4_3:171654-171673 | Msa0623000:five_prime_UTR | 50.0% | |
| ! | AGTCTGGATGGTGACGATGT+CGG | + | chr4_3:171706-171725 | None:intergenic | 50.0% |
| GCTGTCAACAAAGTCGGCAT+CGG | + | chr4_3:171747-171766 | None:intergenic | 50.0% | |
| CGACTTTGTTGACAGCGTAG+AGG | - | chr4_3:171751-171770 | Msa0623000:five_prime_UTR | 50.0% | |
| GTTGGGCAATCGGAGTAGGA+CGG | + | chr4_3:168340-168359 | None:intergenic | 55.0% | |
| GAGAGAGAGAGAGAGAGAGC+CGG | + | chr4_3:168390-168409 | None:intergenic | 55.0% | |
| !! | GGGATCTGACGGGTGTTTTG+TGG | - | chr4_3:169171-169190 | Msa0623000:intron | 55.0% |
| ACGCTACAACACCATGGCAG+TGG | - | chr4_3:171202-171221 | Msa0623000:intron | 55.0% | |
| CGCTACAACACCATGGCAGT+GGG | - | chr4_3:171203-171222 | Msa0623000:intron | 55.0% | |
| ATGCAGGGCAGCTGGATACA+GGG | - | chr4_3:171270-171289 | Msa0623000:intron | 55.0% | |
| TTCTGGGCTGAATTGGCTGG+GGG | - | chr4_3:171412-171431 | Msa0623000:intron | 55.0% | |
| ATTGGCTGGGGGAAAGACTC+AGG | - | chr4_3:171423-171442 | Msa0623000:intron | 55.0% | |
| TTGGCTGGGGGAAAGACTCA+GGG | - | chr4_3:171424-171443 | Msa0623000:intron | 55.0% | |
| ! | ATGGCAAAGCGCTACAAGCC+AGG | - | chr4_3:171469-171488 | Msa0623000:intron | 55.0% |
| GATACATGCGACTGCTGGGT+AGG | + | chr4_3:171504-171523 | None:intergenic | 55.0% | |
| GCAGCAATCCGGCAGAAACT+TGG | + | chr4_3:171539-171558 | None:intergenic | 55.0% | |
| CTGCCATCTGTGCAGCAATC+CGG | + | chr4_3:171550-171569 | None:intergenic | 55.0% | |
| ! | TGATGCTCGAGTTGCACGTG+AGG | - | chr4_3:171599-171618 | Msa0623000:exon | 55.0% |
| GGACGGTGGGCAATCAGAGA+TGG | + | chr4_3:168323-168342 | None:intergenic | 60.0% | |
| GGCAATCGGAGTAGGACGGT+GGG | + | chr4_3:168336-168355 | None:intergenic | 60.0% | |
| GAGAGAGAGAGAGAGCCGGT+GGG | + | chr4_3:168386-168405 | None:intergenic | 60.0% | |
| AGAGAGAGAGAGAGAGCCGG+TGG | + | chr4_3:168387-168406 | None:intergenic | 60.0% | |
| AATGAAGGGGAGCGGGATGC+AGG | - | chr4_3:171240-171259 | Msa0623000:intron | 60.0% | |
| ATGAAGGGGAGCGGGATGCA+GGG | - | chr4_3:171241-171260 | Msa0623000:intron | 60.0% | |
| GATGCAGGGGACGAGATGCA+GGG | - | chr4_3:171255-171274 | Msa0623000:intron | 60.0% | |
| GATGCAGGGCAGCTGGATAC+AGG | - | chr4_3:171269-171288 | Msa0623000:intron | 60.0% | |
| CTGGGTAGGGATGATGCACC+TGG | + | chr4_3:171490-171509 | None:intergenic | 60.0% | |
| CTGCCGGATTGCTGCACAGA+TGG | - | chr4_3:171544-171563 | Msa0623000:intron | 60.0% | |
| ACGATGTCGGCCACCCTTGA+TGG | + | chr4_3:171693-171712 | None:intergenic | 60.0% | |
| GGGCAATCGGAGTAGGACGG+TGG | + | chr4_3:168337-168356 | None:intergenic | 65.0% | |
| TGAAGGGGAGCGGGATGCAG+GGG | - | chr4_3:171242-171261 | Msa0623000:intron | 65.0% | |
| GGATGCAGGGGACGAGATGC+AGG | - | chr4_3:171254-171273 | Msa0623000:intron | 65.0% | |
| GGGACGAGATGCAGGGCAGC+TGG | - | chr4_3:171262-171281 | Msa0623000:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 168174 | 171922 | 168174 | ID=Msa0623000;Name=Msa0623000 |
| chr4_3 | mRNA | 168174 | 171922 | 168174 | ID=Msa0623000-mRNA-1;Parent=Msa0623000;Name=Msa0623000-mRNA-1;_AED=0.00;_eAED=0.00;_QI=321|1|1|1|1|1|3|620|116 |
| chr4_3 | exon | 168174 | 169024 | 168174 | ID=Msa0623000-mRNA-1:exon:6;Parent=Msa0623000-mRNA-1 |
| chr4_3 | exon | 170761 | 170856 | 170761 | ID=Msa0623000-mRNA-1:exon:5;Parent=Msa0623000-mRNA-1 |
| chr4_3 | exon | 171578 | 171922 | 171578 | ID=Msa0623000-mRNA-1:exon:4;Parent=Msa0623000-mRNA-1 |
| chr4_3 | five_prime_UTR | 171602 | 171922 | 171602 | ID=Msa0623000-mRNA-1:five_prime_utr;Parent=Msa0623000-mRNA-1 |
| chr4_3 | CDS | 171578 | 171601 | 171578 | ID=Msa0623000-mRNA-1:cds;Parent=Msa0623000-mRNA-1 |
| chr4_3 | CDS | 170761 | 170856 | 170761 | ID=Msa0623000-mRNA-1:cds;Parent=Msa0623000-mRNA-1 |
| chr4_3 | CDS | 168794 | 169024 | 168794 | ID=Msa0623000-mRNA-1:cds;Parent=Msa0623000-mRNA-1 |
| chr4_3 | three_prime_UTR | 168174 | 168793 | 168174 | ID=Msa0623000-mRNA-1:three_prime_utr;Parent=Msa0623000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
