AlfalfaGEDB | Msa0629180

M. sativa cultivar zhongmu-4 / Msa0629180

KEGG: -
GO: GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0629180	XP_003604546.1	96.819	723	23	0	1	723	1	723	0.0	1429

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0629180	sp\|Q9ZU46\|ZAR1_ARATH	43.514	740	362	12	3	721	7	711	0.0	579

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0589030	Msa0629180	0.849283	3.570742e-60	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0629180	MtrunA17_Chr4g0005411	96.819	723	23	0	1	723	1	723	0.0	1429
Msa0629180	MtrunA17_Chr7g0243401	70.851	717	184	8	17	721	18	721	0.0	984
Msa0629180	MtrunA17_Chr1g0209211	42.424	726	356	15	16	721	21	704	1.59e-175	519
Msa0629180	MtrunA17_Chr4g0053411	35.677	768	403	17	18	720	22	763	1.09e-130	405
Msa0629180	MtrunA17_Chr1g0208121	34.960	758	378	20	41	722	13	731	4.24e-123	384
Msa0629180	MtrunA17_Chr1g0174251	51.549	355	145	6	378	721	307	645	6.02e-106	337
Msa0629180	MtrunA17_Chr1g0174251	37.363	273	113	6	14	284	19	235	2.14e-38	151
Msa0629180	MtrunA17_Chr1g0209521	33.520	713	379	20	11	721	18	637	1.17e-92	302
Msa0629180	MtrunA17_Chr5g0437741	33.686	757	374	25	27	721	76	766	8.92e-90	298
Msa0629180	MtrunA17_Chr5g0423121	31.405	726	362	22	4	721	10	607	2.35e-82	274

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0629180	AT1G67510.1	65.084	716	221	8	18	721	21	719	0.0	905
Msa0629180	AT2G01210.1	43.514	740	362	12	3	721	7	711	0.0	579
Msa0629180	AT1G25320.1	43.401	735	358	14	3	721	7	699	0.0	540
Msa0629180	AT1G66830.1	39.071	732	384	11	1	721	1	681	3.86e-170	504
Msa0629180	AT3G57830.3	39.807	726	322	13	20	721	25	659	6.74e-153	459
Msa0629180	AT3G57830.1	39.807	726	322	13	20	721	25	659	6.74e-153	459
Msa0629180	AT2G42290.1	38.140	742	323	17	6	721	14	645	3.57e-145	439
Msa0629180	AT4G34220.1	34.937	790	399	18	3	721	8	753	1.28e-126	394
Msa0629180	AT4G37250.1	35.331	801	389	21	1	721	1	752	6.63e-125	390
Msa0629180	AT5G67280.1	35.065	770	411	22	4	721	12	744	3.28e-121	380

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Find 235 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTTGAAAAGATTGGA+AGG	0.577243	4_3:-10022391	Msa0629180:CDS
AAACAAAATTAAAATGGGGT+TGG	0.513780	4_3:+10021988	None:intergenic
AAAGATTCAGCGTGCCGGAC+AGG	0.419823	4_3:+10025209	None:intergenic
AAATCTCTTCTGTCTATCAT+TGG	0.420719	4_3:-10022095	Msa0629180:three_prime_UTR
AAATGGGATGTATACTCATT+AGG	0.422173	4_3:-10022677	Msa0629180:CDS
AACACCGGCCGGAACCTCAC+CGG	0.531729	4_3:+10025321	None:intergenic
AACAGAAGCCGGAAACGGAC+CGG	0.522005	4_3:+10025465	None:intergenic
AACAGAATCATCTCCCACAT+CGG	0.643095	4_3:-10022621	Msa0629180:CDS
AACCAGGTACACGAGCCTCA+GGG	0.581296	4_3:+10022714	None:intergenic
AACCATCTACAAACCTTTCA+TGG	0.430004	4_3:-10023024	Msa0629180:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGATGAGAGTGAAAATACTA+AGG	+	chr4_3:10022083-10022102	None:intergenic	30.0%
CTACATTTCTCGATATCATT+TGG	+	chr4_3:10022511-10022530	None:intergenic	30.0%
CAAATGATATCGAGAAATGT+AGG	-	chr4_3:10022509-10022528	Msa0629180:CDS	30.0%
GAGATCAAAATAATCAAACC+AGG	+	chr4_3:10022967-10022986	None:intergenic	30.0%
ATAAGGAAGAGAATAGGATT+TGG	-	chr4_3:10023078-10023097	Msa0629180:intron	30.0%
AATAGTTTGAAGAATGAGGA+AGG	-	chr4_3:10023153-10023172	Msa0629180:intron	30.0%
TTAAGCATCCTAATATTGTG+AGG	-	chr4_3:10023430-10023449	Msa0629180:intron	30.0%
ATTGTACACAACATTTGATG+CGG	-	chr4_3:10023722-10023741	Msa0629180:intron	30.0%
CAGAAATTGCAATTACAATG+CGG	-	chr4_3:10023930-10023949	Msa0629180:intron	30.0%
TCGTAATATTGTTTCCCTTA+CGG	-	chr4_3:10024588-10024607	Msa0629180:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	10021956	10025956	10021956	ID=Msa0629180;Name=Msa0629180
chr4_3	mRNA	10021956	10025956	10021956	ID=Msa0629180-mRNA-1;Parent=Msa0629180;Name=Msa0629180-mRNA-1;_AED=0.01;_eAED=0.01;_QI=81\|1\|1\|1\|1\|1\|2\|432\|723
chr4_3	exon	10021956	10023058	10021956	ID=Msa0629180-mRNA-1:exon:3018;Parent=Msa0629180-mRNA-1
chr4_3	exon	10024375	10025956	10024375	ID=Msa0629180-mRNA-1:exon:3017;Parent=Msa0629180-mRNA-1
chr4_3	five_prime_UTR	10025876	10025956	10025876	ID=Msa0629180-mRNA-1:five_prime_utr;Parent=Msa0629180-mRNA-1
chr4_3	CDS	10024375	10025875	10024375	ID=Msa0629180-mRNA-1:cds;Parent=Msa0629180-mRNA-1
chr4_3	CDS	10022388	10023058	10022388	ID=Msa0629180-mRNA-1:cds;Parent=Msa0629180-mRNA-1
chr4_3	three_prime_UTR	10021956	10022387	10021956	ID=Msa0629180-mRNA-1:three_prime_utr;Parent=Msa0629180-mRNA-1

Gene Sequence

>Msa0629180

ATGAAGATATTTTTCTTTCTTCTTTGCTTTCATTTTTTCTTCACCTTAGTATTTTCACTCTCATCAGATGGCCTTGCACTTCTCTCTCTAAAAGCCGCCGTCGATCAATCAATCGACGGCACTTTCTCCGACTGGAACGGAGGAGATTCCTACCCCTGCGGATGGTCGGGAATCTCCTGCGCGAATATCTCCGGTATACCGGAGCCGCGTGTAGTTGGAATTGCACTCGCCGGAAAATCTCTCCGGGGATACATTCCGTCGGAGCTTGGTACACTTCGGTATCTTCGACGTCTTAATCTTCATGATAATGAATTCTACGGTGTTGTTCCGGTTCAGTTGTTTAATGCTACTGCACTTCACAGTATTTTTCTTCACCGGAATAATCTCTCCGGTCCGTTTCCGGCTTCTGTTTGCACCGTTCCGCGTCTTCAGAATCTAGACCTGTCTGACAATTCCTTCTCCGGTGACATTCCAAATGATATCGAGAAATGTAGGCAACTTCAGAGGCTTATTTTAGCAAGGAACAAATTCTCCGGTGAGGTTCCGGCCGGTGTTTGGTCCGGACTCGAGAATCTCGTCCAGCTTGATCTCTCCGGTAATGATTTCAAAGGTTCGATCCCGGACGACATTGGTGACCTCGGCTCCCTGTCCGGCACGCTGAATCTTTCTTTCAACCATTTCTCCGGTAGGATTCCGAGCTCACTCGGGAAATTACCGGCCACAGTGAACTTTGATCTCCGAAGCAATAACCTAGTTGGAGAGATTCCACAAACGGGAACATTTTCAAACCAGGGCCCAACTGCATTCCTCGGTAACAAAAACCTGTGCGGACTTCCATTAAGAAAATCCTGCACAGGTTCAGACCGAGGTTCATCTGGTTCGTCTTCTCACAAAGACGAATTAGATGACCGTTCGAAAGGGTTGAGCCCTGGTTTGATTATTTTGATCTCAGCAGCAGATGTTGCTGGGGTCGCACTTGTTGGGCTTGCGATTGTATATGTTTATTGGAAGAAGAAGGATGGTCACAATGTATGGTGTTGCATAAGGAAGAGAATAGGATTTGGTGATGAGAATGAGGATGAGAAAGGAAGTGCTTGTACTTTGCTTCCATGTATAAATAGTTTGAAGAATGAGGAAGGTAATGATGAGAGTGAAGTAGATGTAGATGGAGGAGGAAAAGGAGAAGGTGAATTGGTGACAATTGATAAAGGTTTTAGGATTGAGCTTGATGAGCTTTTGAAGGCATCAGCATATGTGTTAGGGAAGAGTGCATTAGGGATTGTGTATAAGGTGGTGCTTGGAAATGGGATGCCGGTGGCTGTGAGGAGATTAGGGGAGGGTGGAGAAGAGAAGTATAAGGAGTTTGTAGCTGAGGTGCAAACCATTGGGAAGGTTAAGCATCCTAATATTGTGAGGTTGAGAGCTTATTATTGGGCTCATGATGAAAAGCTTCTTATAAGTGATTTTATCTCCAATGGCAATTTGCACAATGCACTTCGAGGGAGAAATGGTCAACCATCTACAAACCTTTCATGGTCAACAAGGTTAAGAATTGCAAAAGGAATAGCAAGAGGTTTATCTTATCTTCATGAATTTAGTCCTAGAAAATTTGTCCATGGTGACATAAAACCTACAAACATCTTACTCGACAACGACTTAGAACCCTACATTTCCGATTTTGGACTTAACCGACTAATCAGCATCACTGGCAACAGCCCTTCAACTGGTGGATTCATGGGTGGAGCACTACCTTACATGATGAAATCATCACACAAAGATAGTAGGTTTTCATCAGACAACGGTCGTGGTAACAATTACAAAGCCCCTGAGGCTCGTGTACCTGGTTGTAGACCAACACAGAAATGGGATGTATACTCATTAGGTGTTGTTTTACTTGAATTGTTGACTGGAAAATCAACAGAATCATCTCCCACATCGGCCTCATCGTCAGCTTCTGTTGAAGTTTCGGATTTGGTAAGATGGGTGAGAAATGGGTTCGATCAAGAAAGTCCATTATCTGAAATGGTTGATCCATCTTTGCTACAAGAAGTTCGTGCTAAGAAAGAGGTATTGGCTGTGTTTCATGTAGCACTTTCATGTACTGAAGGTGATCCTGAAGTTAGGCCTAGAATGAAAACTGTCTCTGAAAATCTTGAAAAGATTGGAAGGTAA

Protein sequence

>Msa0629180

MKIFFFLLCFHFFFTLVFSLSSDGLALLSLKAAVDQSIDGTFSDWNGGDSYPCGWSGISCANISGIPEPRVVGIALAGKSLRGYIPSELGTLRYLRRLNLHDNEFYGVVPVQLFNATALHSIFLHRNNLSGPFPASVCTVPRLQNLDLSDNSFSGDIPNDIEKCRQLQRLILARNKFSGEVPAGVWSGLENLVQLDLSGNDFKGSIPDDIGDLGSLSGTLNLSFNHFSGRIPSSLGKLPATVNFDLRSNNLVGEIPQTGTFSNQGPTAFLGNKNLCGLPLRKSCTGSDRGSSGSSSHKDELDDRSKGLSPGLIILISAADVAGVALVGLAIVYVYWKKKDGHNVWCCIRKRIGFGDENEDEKGSACTLLPCINSLKNEEGNDESEVDVDGGGKGEGELVTIDKGFRIELDELLKASAYVLGKSALGIVYKVVLGNGMPVAVRRLGEGGEEKYKEFVAEVQTIGKVKHPNIVRLRAYYWAHDEKLLISDFISNGNLHNALRGRNGQPSTNLSWSTRLRIAKGIARGLSYLHEFSPRKFVHGDIKPTNILLDNDLEPYISDFGLNRLISITGNSPSTGGFMGGALPYMMKSSHKDSRFSSDNGRGNNYKAPEARVPGCRPTQKWDVYSLGVVLLELLTGKSTESSPTSASSSASVEVSDLVRWVRNGFDQESPLSEMVDPSLLQEVRAKKEVLAVFHVALSCTEGDPEVRPRMKTVSENLEKIGR*