AlfalfaGEDB | Msa0633050

M. sativa cultivar zhongmu-4 / Msa0633050

KEGG: K03267
GO: GO:0002181 GO:0002184 GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006464 GO:0006479 GO:0006518 GO:0006807 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0008213 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0018444 GO:0019538 GO:0022411 GO:0032259 GO:0032984 GO:0032991 GO:0034641 GO:0034645 GO:0036211 GO:0043043 GO:0043170 GO:0043412 GO:0043414 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0633050	PNY15695.1	52.542	118	9	2	1	71	2	119	3.21e-23	98.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0633050	A0A2K3PKA9	52.542	118	9	2	1	71	2	119	1.53e-23	98.6

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0633050	Msa0657970	0.809129	2.203546e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0633050	MtrunA17_Chr8g0392641	50.427	117	12	1	1	71	74	190	6.93e-25	95.5
Msa0633050	MtrunA17_Chr6g0483121	80.000	35	7	0	37	71	101	135	3.07e-12	59.7

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0633050	AT1G18070.1	82.857	35	6	37	71	111	145	4.37e-12	59.7
Msa0633050	AT1G18070.2	82.857	35	6	37	71	111	145	4.37e-12	59.7
Msa0633050	AT1G18070.3	82.857	35	6	37	71	111	145	4.59e-12	59.7

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Find 15 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATGAGAAAGAAGTTA+AGG	0.414475	4_3:-17750187	Msa0633050:CDS
AAAGCCAGATGTTGATAAGA+TGG	0.543709	4_3:-17750847	Msa0633050:CDS
AGCAGAAGACATTAATGCGG+TGG	0.607728	4_3:-17750886	Msa0633050:intron
AGGAGGACATTCGTTCTTTA+CGG	0.348325	4_3:-17751026	Msa0633050:CDS
GATCACTGAGGAAAAGTATA+TGG	0.385407	4_3:+17750232	None:intergenic
GATCATCAACCTGATCACTG+AGG	0.797930	4_3:+17750220	None:intergenic
GATGCTGGCAAGTCTACAGC+TGG	0.529715	4_3:-17750258	Msa0633050:CDS
GATGTTGATAAGATGGATGA+AGG	0.491969	4_3:-17750840	Msa0633050:intron
GCTGGCAAGTCTACAGCTGG+AGG	0.652355	4_3:-17750255	Msa0633050:CDS
TAAAGCAGAAGACATTAATG+CGG	0.718398	4_3:-17750889	Msa0633050:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAGAATTGCAGAGAAG+AGG	+	chr4_3:17750234-17750253	None:intergenic	30.0%
TGTTTGAATGGTAGATATTG+AGG	-	chr4_3:17750831-17750850	Msa0633050:intron	30.0%
TAAAGCAGAAGACATTAATG+CGG	-	chr4_3:17750988-17751007	Msa0633050:intron	30.0%
CTATTGTAAGAAGCAGAAAA+AGG	+	chr4_3:17751277-17751296	None:intergenic	30.0%
TTCTCAATTGTTCAGAAAGA+TGG	-	chr4_3:17751333-17751352	Msa0633050:intron	30.0%
AACAAGAGACCTTAAGAAAA+AGG	+	chr4_3:17751453-17751472	None:intergenic	30.0%
AAAAAAGAATTGCAGAGAAG+AGG	+	chr4_3:17750234-17750253	None:intergenic	30.0%
TGTTTGAATGGTAGATATTG+AGG	-	chr4_3:17750831-17750850	Msa0633050:intron	30.0%
TAAAGCAGAAGACATTAATG+CGG	-	chr4_3:17750988-17751007	Msa0633050:intron	30.0%
CTATTGTAAGAAGCAGAAAA+AGG	+	chr4_3:17751277-17751296	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	17750173	17751726	17750173	ID=Msa0633050;Name=Msa0633050
chr4_3	mRNA	17750173	17751726	17750173	ID=Msa0633050-mRNA-1;Parent=Msa0633050;Name=Msa0633050-mRNA-1;_AED=0.59;_eAED=0.59;_QI=0\|0\|0\|0.5\|0.66\|1\|4\|0\|71
chr4_3	exon	17751723	17751726	17751723	ID=Msa0633050-mRNA-1:exon:5017;Parent=Msa0633050-mRNA-1
chr4_3	exon	17751013	17751054	17751013	ID=Msa0633050-mRNA-1:exon:5016;Parent=Msa0633050-mRNA-1
chr4_3	exon	17750841	17750903	17750841	ID=Msa0633050-mRNA-1:exon:5015;Parent=Msa0633050-mRNA-1
chr4_3	exon	17750173	17750279	17750173	ID=Msa0633050-mRNA-1:exon:5014;Parent=Msa0633050-mRNA-1
chr4_3	CDS	17751723	17751726	17751723	ID=Msa0633050-mRNA-1:cds;Parent=Msa0633050-mRNA-1
chr4_3	CDS	17751013	17751054	17751013	ID=Msa0633050-mRNA-1:cds;Parent=Msa0633050-mRNA-1
chr4_3	CDS	17750841	17750903	17750841	ID=Msa0633050-mRNA-1:cds;Parent=Msa0633050-mRNA-1
chr4_3	CDS	17750173	17750279	17750173	ID=Msa0633050-mRNA-1:cds;Parent=Msa0633050-mRNA-1

Gene Sequence	>Msa0633050 ATGGATATTGAGGAGGACATTCGTTCTTTACGGCTTGACTCAGCAGAAGACATTAATGCGGTGGTAAATCCAGAGGATGAAAAGCCAGATGTTGATAAGATGGATGAAGATGCTGGCAAGTCTACAGCTGGAGGCCATATACTTTTCCTCAGTGATCAGGTTGATGATCGAACTATCCAAAAATATGAGAAAGAAGTTAAGGACATAAGTCGATAA
Protein sequence	>Msa0633050 MDIEEDIRSLRLDSAEDINAVVNPEDEKPDVDKMDEDAGKSTAGGHILFLSDQVDDRTIQKYEKEVKDISR*