Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0633050 | PNY15695.1 | 52.542 | 118 | 9 | 2 | 1 | 71 | 2 | 119 | 3.21e-23 | 98.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0633050 | A0A2K3PKA9 | 52.542 | 118 | 9 | 2 | 1 | 71 | 2 | 119 | 1.53e-23 | 98.6 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0633050 | Msa0657970 | 0.809129 | 2.203546e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0633050 | MtrunA17_Chr8g0392641 | 50.427 | 117 | 12 | 1 | 1 | 71 | 74 | 190 | 6.93e-25 | 95.5 |
| Msa0633050 | MtrunA17_Chr6g0483121 | 80.000 | 35 | 7 | 0 | 37 | 71 | 101 | 135 | 3.07e-12 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0633050 | AT1G18070.1 | 82.857 | 35 | 6 | 0 | 37 | 71 | 111 | 145 | 4.37e-12 | 59.7 |
| Msa0633050 | AT1G18070.2 | 82.857 | 35 | 6 | 0 | 37 | 71 | 111 | 145 | 4.37e-12 | 59.7 |
| Msa0633050 | AT1G18070.3 | 82.857 | 35 | 6 | 0 | 37 | 71 | 111 | 145 | 4.59e-12 | 59.7 |
Find 15 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAGGACATTCGTTCTTTA+CGG | 0.348325 | 4_3:-17751026 | Msa0633050:CDS |
| GATCACTGAGGAAAAGTATA+TGG | 0.385407 | 4_3:+17750232 | None:intergenic |
| TCATCCATCTTATCAACATC+TGG | 0.405376 | 4_3:+17750843 | None:intergenic |
| AAAATATGAGAAAGAAGTTA+AGG | 0.414475 | 4_3:-17750187 | Msa0633050:CDS |
| TGTTTGAATGGTAGATATTG+AGG | 0.446303 | 4_3:-17751046 | Msa0633050:intron |
| GATGTTGATAAGATGGATGA+AGG | 0.491969 | 4_3:-17750840 | Msa0633050:intron |
| TCTTTACGGCTTGACTCAGC+AGG | 0.497939 | 4_3:-17751012 | Msa0633050:intron |
| GATGCTGGCAAGTCTACAGC+TGG | 0.529715 | 4_3:-17750258 | Msa0633050:CDS |
| AAAGCCAGATGTTGATAAGA+TGG | 0.543709 | 4_3:-17750847 | Msa0633050:CDS |
| AGCAGAAGACATTAATGCGG+TGG | 0.607728 | 4_3:-17750886 | Msa0633050:intron |
| GCTGGCAAGTCTACAGCTGG+AGG | 0.652355 | 4_3:-17750255 | Msa0633050:CDS |
| TTGAATGGTAGATATTGAGG+AGG | 0.671955 | 4_3:-17751043 | Msa0633050:intron |
| TAATGCGGTGGTAAATCCAG+AGG | 0.682339 | 4_3:-17750874 | Msa0633050:CDS |
| TAAAGCAGAAGACATTAATG+CGG | 0.718398 | 4_3:-17750889 | Msa0633050:intron |
| GATCATCAACCTGATCACTG+AGG | 0.797930 | 4_3:+17750220 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTCATTTATAATTTATTTT+TGG | - | chr4_3:17750523-17750542 | Msa0633050:intron | 10.0% |
| !!! | TCATTTATAATTTATTTTTG+GGG | - | chr4_3:17750525-17750544 | Msa0633050:intron | 10.0% |
| !!! | TATTTTATTTTATTTTTGTC+GGG | + | chr4_3:17750712-17750731 | None:intergenic | 10.0% |
| !! | CTTTATTATATAATCAATAT+TGG | + | chr4_3:17750973-17750992 | None:intergenic | 10.0% |
| !!! | CTTCATTTATAATTTATTTT+TGG | - | chr4_3:17750523-17750542 | Msa0633050:intron | 10.0% |
| !!! | TCATTTATAATTTATTTTTG+GGG | - | chr4_3:17750525-17750544 | Msa0633050:intron | 10.0% |
| !!! | TATTTTATTTTATTTTTGTC+GGG | + | chr4_3:17750712-17750731 | None:intergenic | 10.0% |
| !! | CTTTATTATATAATCAATAT+TGG | + | chr4_3:17750973-17750992 | None:intergenic | 10.0% |
| !!! | TTTTTAATTAATCGATCTTT+TGG | - | chr4_3:17750639-17750658 | Msa0633050:intron | 15.0% |
| !!! | TAATGTTTTTTATGTTTGAA+TGG | - | chr4_3:17750819-17750838 | Msa0633050:intron | 15.0% |
| !!! | TTTTTAATTAATCGATCTTT+TGG | - | chr4_3:17750639-17750658 | Msa0633050:intron | 15.0% |
| !!! | TAATGTTTTTTATGTTTGAA+TGG | - | chr4_3:17750819-17750838 | Msa0633050:intron | 15.0% |
| !!! | CAAAATAAGAGTATGAAAAA+CGG | + | chr4_3:17750296-17750315 | None:intergenic | 20.0% |
| !!! | CATTTCTAGTGTTAATTTAA+TGG | - | chr4_3:17750366-17750385 | Msa0633050:intron | 20.0% |
| !! | GGTATTATTATAGAATCAAA+AGG | + | chr4_3:17750691-17750710 | None:intergenic | 20.0% |
| !! | AGAAAATATAAACATGAAAC+TGG | + | chr4_3:17751114-17751133 | None:intergenic | 20.0% |
| !!! | TTGTCATTATCAATTTCTTT+TGG | - | chr4_3:17751245-17751264 | Msa0633050:intron | 20.0% |
| !! | TTCAAAAATGATTGTGTTAA+GGG | + | chr4_3:17751313-17751332 | None:intergenic | 20.0% |
| !! | ATTCAAAAATGATTGTGTTA+AGG | + | chr4_3:17751314-17751333 | None:intergenic | 20.0% |
| !! | CTTAAAAGATATTATAGAAG+TGG | - | chr4_3:17751401-17751420 | Msa0633050:intron | 20.0% |
| !!! | TAACTTCTTTCTCATATTTT+TGG | + | chr4_3:17751690-17751709 | None:intergenic | 20.0% |
| !! | AAAATATGAGAAAGAAGTTA+AGG | - | chr4_3:17751690-17751709 | Msa0633050:intron | 20.0% |
| !!! | CAAAATAAGAGTATGAAAAA+CGG | + | chr4_3:17750296-17750315 | None:intergenic | 20.0% |
| !!! | CATTTCTAGTGTTAATTTAA+TGG | - | chr4_3:17750366-17750385 | Msa0633050:intron | 20.0% |
| !! | GGTATTATTATAGAATCAAA+AGG | + | chr4_3:17750691-17750710 | None:intergenic | 20.0% |
| !! | AGAAAATATAAACATGAAAC+TGG | + | chr4_3:17751114-17751133 | None:intergenic | 20.0% |
| !!! | TTGTCATTATCAATTTCTTT+TGG | - | chr4_3:17751245-17751264 | Msa0633050:intron | 20.0% |
| !! | TTCAAAAATGATTGTGTTAA+GGG | + | chr4_3:17751313-17751332 | None:intergenic | 20.0% |
| !! | ATTCAAAAATGATTGTGTTA+AGG | + | chr4_3:17751314-17751333 | None:intergenic | 20.0% |
| !! | CTTAAAAGATATTATAGAAG+TGG | - | chr4_3:17751401-17751420 | Msa0633050:intron | 20.0% |
| !!! | TAACTTCTTTCTCATATTTT+TGG | + | chr4_3:17751690-17751709 | None:intergenic | 20.0% |
| !! | AAAATATGAGAAAGAAGTTA+AGG | - | chr4_3:17751690-17751709 | Msa0633050:intron | 20.0% |
| !!! | ATCCAATACCAATTTGTTAT+TGG | - | chr4_3:17750195-17750214 | Msa0633050:CDS | 25.0% |
| ! | AACCAATAACAAATTGGTAT+TGG | + | chr4_3:17750200-17750219 | None:intergenic | 25.0% |
| ! | AGCAATAACCAATAACAAAT+TGG | + | chr4_3:17750206-17750225 | None:intergenic | 25.0% |
| ! | ACATGCAACTGAAAATAATA+AGG | + | chr4_3:17750483-17750502 | None:intergenic | 25.0% |
| ! | AATTAAGACTATCCATAAGT+TGG | + | chr4_3:17750609-17750628 | None:intergenic | 25.0% |
| !!! | GCTTTTTCTTTGATGTTTTA+AGG | - | chr4_3:17750778-17750797 | Msa0633050:intron | 25.0% |
| !!! | TTTGATGTTTTAAGGAATCA+GGG | - | chr4_3:17750786-17750805 | Msa0633050:intron | 25.0% |
| !! | CATGTTTATATTTTCTGTGA+AGG | - | chr4_3:17751118-17751137 | Msa0633050:intron | 25.0% |
| ! | TCAAAAATGATTGTGTTAAG+GGG | + | chr4_3:17751312-17751331 | None:intergenic | 25.0% |
| ! | ATGTAAAACTTTATTCCCAA+CGG | - | chr4_3:17751361-17751380 | Msa0633050:intron | 25.0% |
| ! | TTGTTACAATCATGTACTTA+TGG | - | chr4_3:17751468-17751487 | Msa0633050:intron | 25.0% |
| !!! | ATCCAATACCAATTTGTTAT+TGG | - | chr4_3:17750195-17750214 | Msa0633050:CDS | 25.0% |
| ! | AACCAATAACAAATTGGTAT+TGG | + | chr4_3:17750200-17750219 | None:intergenic | 25.0% |
| ! | AGCAATAACCAATAACAAAT+TGG | + | chr4_3:17750206-17750225 | None:intergenic | 25.0% |
| ! | ACATGCAACTGAAAATAATA+AGG | + | chr4_3:17750483-17750502 | None:intergenic | 25.0% |
| ! | AATTAAGACTATCCATAAGT+TGG | + | chr4_3:17750609-17750628 | None:intergenic | 25.0% |
| !!! | GCTTTTTCTTTGATGTTTTA+AGG | - | chr4_3:17750778-17750797 | Msa0633050:intron | 25.0% |
| !!! | TTTGATGTTTTAAGGAATCA+GGG | - | chr4_3:17750786-17750805 | Msa0633050:intron | 25.0% |
| !! | CATGTTTATATTTTCTGTGA+AGG | - | chr4_3:17751118-17751137 | Msa0633050:intron | 25.0% |
| ! | TCAAAAATGATTGTGTTAAG+GGG | + | chr4_3:17751312-17751331 | None:intergenic | 25.0% |
| ! | ATGTAAAACTTTATTCCCAA+CGG | - | chr4_3:17751361-17751380 | Msa0633050:intron | 25.0% |
| ! | TTGTTACAATCATGTACTTA+TGG | - | chr4_3:17751468-17751487 | Msa0633050:intron | 25.0% |
| AAAAAAGAATTGCAGAGAAG+AGG | + | chr4_3:17750234-17750253 | None:intergenic | 30.0% | |
| !!! | CTTTGATGTTTTAAGGAATC+AGG | - | chr4_3:17750785-17750804 | Msa0633050:intron | 30.0% |
| !!! | TTGATGTTTTAAGGAATCAG+GGG | - | chr4_3:17750787-17750806 | Msa0633050:intron | 30.0% |
| TGTTTGAATGGTAGATATTG+AGG | - | chr4_3:17750831-17750850 | Msa0633050:intron | 30.0% | |
| TAAAGCAGAAGACATTAATG+CGG | - | chr4_3:17750988-17751007 | Msa0633050:intron | 30.0% | |
| ! | AATCTCATTAGCATTGAAAG+TGG | - | chr4_3:17751143-17751162 | Msa0633050:intron | 30.0% |
| ! | ATCTCATTAGCATTGAAAGT+GGG | - | chr4_3:17751144-17751163 | Msa0633050:intron | 30.0% |
| CTATTGTAAGAAGCAGAAAA+AGG | + | chr4_3:17751277-17751296 | None:intergenic | 30.0% | |
| TTCTCAATTGTTCAGAAAGA+TGG | - | chr4_3:17751333-17751352 | Msa0633050:intron | 30.0% | |
| AACAAGAGACCTTAAGAAAA+AGG | + | chr4_3:17751453-17751472 | None:intergenic | 30.0% | |
| ! | GAATGATTGATAGCCAAAAT+AGG | - | chr4_3:17751511-17751530 | Msa0633050:intron | 30.0% |
| AAAAAAGAATTGCAGAGAAG+AGG | + | chr4_3:17750234-17750253 | None:intergenic | 30.0% | |
| !!! | CTTTGATGTTTTAAGGAATC+AGG | - | chr4_3:17750785-17750804 | Msa0633050:intron | 30.0% |
| !!! | TTGATGTTTTAAGGAATCAG+GGG | - | chr4_3:17750787-17750806 | Msa0633050:intron | 30.0% |
| TGTTTGAATGGTAGATATTG+AGG | - | chr4_3:17750831-17750850 | Msa0633050:intron | 30.0% | |
| TAAAGCAGAAGACATTAATG+CGG | - | chr4_3:17750988-17751007 | Msa0633050:intron | 30.0% | |
| ! | AATCTCATTAGCATTGAAAG+TGG | - | chr4_3:17751143-17751162 | Msa0633050:intron | 30.0% |
| ! | ATCTCATTAGCATTGAAAGT+GGG | - | chr4_3:17751144-17751163 | Msa0633050:intron | 30.0% |
| CTATTGTAAGAAGCAGAAAA+AGG | + | chr4_3:17751277-17751296 | None:intergenic | 30.0% | |
| TTCTCAATTGTTCAGAAAGA+TGG | - | chr4_3:17751333-17751352 | Msa0633050:intron | 30.0% | |
| AACAAGAGACCTTAAGAAAA+AGG | + | chr4_3:17751453-17751472 | None:intergenic | 30.0% | |
| ! | GAATGATTGATAGCCAAAAT+AGG | - | chr4_3:17751511-17751530 | Msa0633050:intron | 30.0% |
| AGAGTTTGTGTGAACAGAAT+AGG | + | chr4_3:17750419-17750438 | None:intergenic | 35.0% | |
| TTGAATGGTAGATATTGAGG+AGG | - | chr4_3:17750834-17750853 | Msa0633050:intron | 35.0% | |
| ACACAAAAACCTTATGCCTA+AGG | + | chr4_3:17750895-17750914 | None:intergenic | 35.0% | |
| TACGTATCTATGTCTGTGTA+TGG | - | chr4_3:17750930-17750949 | Msa0633050:intron | 35.0% | |
| ! | AAAGCCAGATGTTGATAAGA+TGG | - | chr4_3:17751030-17751049 | Msa0633050:CDS | 35.0% |
| TCATCCATCTTATCAACATC+TGG | + | chr4_3:17751037-17751056 | None:intergenic | 35.0% | |
| ! | GATGTTGATAAGATGGATGA+AGG | - | chr4_3:17751037-17751056 | Msa0633050:intron | 35.0% |
| TGTAAGAAGCAGAAAAAGGT+TGG | + | chr4_3:17751273-17751292 | None:intergenic | 35.0% | |
| TTGTGTTAAGGGGAAATGAA+AGG | + | chr4_3:17751302-17751321 | None:intergenic | 35.0% | |
| TAAGAAAAAGGAGGAAAGAC+AGG | + | chr4_3:17751441-17751460 | None:intergenic | 35.0% | |
| ! | GTCTTTCCTCCTTTTTCTTA+AGG | - | chr4_3:17751441-17751460 | Msa0633050:intron | 35.0% |
| AAGAGACCTTAAGAAAAAGG+AGG | + | chr4_3:17751450-17751469 | None:intergenic | 35.0% | |
| AACACTACACAGTCATAGAT+TGG | + | chr4_3:17751563-17751582 | None:intergenic | 35.0% | |
| ! | GATCACTGAGGAAAAGTATA+TGG | + | chr4_3:17751648-17751667 | None:intergenic | 35.0% |
| ! | TATACTTTTCCTCAGTGATC+AGG | - | chr4_3:17751648-17751667 | Msa0633050:intron | 35.0% |
| AGAGTTTGTGTGAACAGAAT+AGG | + | chr4_3:17750419-17750438 | None:intergenic | 35.0% | |
| TTGAATGGTAGATATTGAGG+AGG | - | chr4_3:17750834-17750853 | Msa0633050:intron | 35.0% | |
| ACACAAAAACCTTATGCCTA+AGG | + | chr4_3:17750895-17750914 | None:intergenic | 35.0% | |
| TACGTATCTATGTCTGTGTA+TGG | - | chr4_3:17750930-17750949 | Msa0633050:intron | 35.0% | |
| ! | AAAGCCAGATGTTGATAAGA+TGG | - | chr4_3:17751030-17751049 | Msa0633050:CDS | 35.0% |
| TCATCCATCTTATCAACATC+TGG | + | chr4_3:17751037-17751056 | None:intergenic | 35.0% | |
| ! | GATGTTGATAAGATGGATGA+AGG | - | chr4_3:17751037-17751056 | Msa0633050:intron | 35.0% |
| TGTAAGAAGCAGAAAAAGGT+TGG | + | chr4_3:17751273-17751292 | None:intergenic | 35.0% | |
| TTGTGTTAAGGGGAAATGAA+AGG | + | chr4_3:17751302-17751321 | None:intergenic | 35.0% | |
| TAAGAAAAAGGAGGAAAGAC+AGG | + | chr4_3:17751441-17751460 | None:intergenic | 35.0% | |
| ! | GTCTTTCCTCCTTTTTCTTA+AGG | - | chr4_3:17751441-17751460 | Msa0633050:intron | 35.0% |
| AAGAGACCTTAAGAAAAAGG+AGG | + | chr4_3:17751450-17751469 | None:intergenic | 35.0% | |
| AACACTACACAGTCATAGAT+TGG | + | chr4_3:17751563-17751582 | None:intergenic | 35.0% | |
| ! | GATCACTGAGGAAAAGTATA+TGG | + | chr4_3:17751648-17751667 | None:intergenic | 35.0% |
| ! | TATACTTTTCCTCAGTGATC+AGG | - | chr4_3:17751648-17751667 | Msa0633050:intron | 35.0% |
| ! | TGTTATCATGCTGCTGATTG+TGG | - | chr4_3:17750500-17750519 | Msa0633050:intron | 40.0% |
| GCAATACGACAACCAACTTA+TGG | - | chr4_3:17750594-17750613 | Msa0633050:intron | 40.0% | |
| !! | TTTTAAGGAATCAGGGGAGT+CGG | - | chr4_3:17750793-17750812 | Msa0633050:intron | 40.0% |
| AGGAGGACATTCGTTCTTTA+CGG | - | chr4_3:17750851-17750870 | Msa0633050:CDS | 40.0% | |
| !! | GAAGGTTTGTTGTCATGAAG+AGG | - | chr4_3:17751055-17751074 | Msa0633050:intron | 40.0% |
| !! | GTTTGTTGTCATGAAGAGGT+TGG | - | chr4_3:17751059-17751078 | Msa0633050:intron | 40.0% |
| ATTGGATGAGACCTATTGTG+GGG | + | chr4_3:17751545-17751564 | None:intergenic | 40.0% | |
| GATTGGATGAGACCTATTGT+GGG | + | chr4_3:17751546-17751565 | None:intergenic | 40.0% | |
| AGATTGGATGAGACCTATTG+TGG | + | chr4_3:17751547-17751566 | None:intergenic | 40.0% | |
| ! | ACTGTGTAGTGTTGTTCTAG+TGG | - | chr4_3:17751570-17751589 | Msa0633050:intron | 40.0% |
| ! | CTTGTTCTTGTTCTAGATGC+TGG | - | chr4_3:17751604-17751623 | Msa0633050:intron | 40.0% |
| ! | TGTTATCATGCTGCTGATTG+TGG | - | chr4_3:17750500-17750519 | Msa0633050:intron | 40.0% |
| GCAATACGACAACCAACTTA+TGG | - | chr4_3:17750594-17750613 | Msa0633050:intron | 40.0% | |
| !! | TTTTAAGGAATCAGGGGAGT+CGG | - | chr4_3:17750793-17750812 | Msa0633050:intron | 40.0% |
| AGGAGGACATTCGTTCTTTA+CGG | - | chr4_3:17750851-17750870 | Msa0633050:CDS | 40.0% | |
| !! | GAAGGTTTGTTGTCATGAAG+AGG | - | chr4_3:17751055-17751074 | Msa0633050:intron | 40.0% |
| !! | GTTTGTTGTCATGAAGAGGT+TGG | - | chr4_3:17751059-17751078 | Msa0633050:intron | 40.0% |
| ATTGGATGAGACCTATTGTG+GGG | + | chr4_3:17751545-17751564 | None:intergenic | 40.0% | |
| GATTGGATGAGACCTATTGT+GGG | + | chr4_3:17751546-17751565 | None:intergenic | 40.0% | |
| AGATTGGATGAGACCTATTG+TGG | + | chr4_3:17751547-17751566 | None:intergenic | 40.0% | |
| ! | ACTGTGTAGTGTTGTTCTAG+TGG | - | chr4_3:17751570-17751589 | Msa0633050:intron | 40.0% |
| ! | CTTGTTCTTGTTCTAGATGC+TGG | - | chr4_3:17751604-17751623 | Msa0633050:intron | 40.0% |
| TGACTCAGCAGGTAATCCTT+AGG | - | chr4_3:17750876-17750895 | Msa0633050:CDS | 45.0% | |
| GCAGGTAATCCTTAGGCATA+AGG | - | chr4_3:17750883-17750902 | Msa0633050:CDS | 45.0% | |
| AGCAGAAGACATTAATGCGG+TGG | - | chr4_3:17750991-17751010 | Msa0633050:intron | 45.0% | |
| TAATGCGGTGGTAAATCCAG+AGG | - | chr4_3:17751003-17751022 | Msa0633050:intron | 45.0% | |
| !!! | ACATCTGGCTTTTCATCCTC+TGG | + | chr4_3:17751022-17751041 | None:intergenic | 45.0% |
| ! | GAGTCTCGTTTTCAACCGTT+GGG | + | chr4_3:17751379-17751398 | None:intergenic | 45.0% |
| ! | AGAGTCTCGTTTTCAACCGT+TGG | + | chr4_3:17751380-17751399 | None:intergenic | 45.0% |
| ! | TGGGGACAGTGTACCTATTT+TGG | + | chr4_3:17751527-17751546 | None:intergenic | 45.0% |
| GATCATCAACCTGATCACTG+AGG | + | chr4_3:17751660-17751679 | None:intergenic | 45.0% | |
| TGACTCAGCAGGTAATCCTT+AGG | - | chr4_3:17750876-17750895 | Msa0633050:CDS | 45.0% | |
| GCAGGTAATCCTTAGGCATA+AGG | - | chr4_3:17750883-17750902 | Msa0633050:CDS | 45.0% | |
| AGCAGAAGACATTAATGCGG+TGG | - | chr4_3:17750991-17751010 | Msa0633050:intron | 45.0% | |
| TAATGCGGTGGTAAATCCAG+AGG | - | chr4_3:17751003-17751022 | Msa0633050:intron | 45.0% | |
| !!! | ACATCTGGCTTTTCATCCTC+TGG | + | chr4_3:17751022-17751041 | None:intergenic | 45.0% |
| ! | GAGTCTCGTTTTCAACCGTT+GGG | + | chr4_3:17751379-17751398 | None:intergenic | 45.0% |
| ! | AGAGTCTCGTTTTCAACCGT+TGG | + | chr4_3:17751380-17751399 | None:intergenic | 45.0% |
| ! | TGGGGACAGTGTACCTATTT+TGG | + | chr4_3:17751527-17751546 | None:intergenic | 45.0% |
| GATCATCAACCTGATCACTG+AGG | + | chr4_3:17751660-17751679 | None:intergenic | 45.0% | |
| !!! | TTCATTTATAATTTATTTTT+GGG | - | chr4_3:17750524-17750543 | Msa0633050:intron | 5.0% |
| !!! | TTATTTTATTTTATTTTTGT+CGG | + | chr4_3:17750713-17750732 | None:intergenic | 5.0% |
| !!! | TTCATTTATAATTTATTTTT+GGG | - | chr4_3:17750524-17750543 | Msa0633050:intron | 5.0% |
| !!! | TTATTTTATTTTATTTTTGT+CGG | + | chr4_3:17750713-17750732 | None:intergenic | 5.0% |
| TGTCGTATTGCGCAGCTTTC+AGG | + | chr4_3:17750585-17750604 | None:intergenic | 50.0% | |
| TCTTTACGGCTTGACTCAGC+AGG | - | chr4_3:17750865-17750884 | Msa0633050:CDS | 50.0% | |
| AGGTACACTGTCCCCACAAT+AGG | - | chr4_3:17751531-17751550 | Msa0633050:intron | 50.0% | |
| TGTCGTATTGCGCAGCTTTC+AGG | + | chr4_3:17750585-17750604 | None:intergenic | 50.0% | |
| TCTTTACGGCTTGACTCAGC+AGG | - | chr4_3:17750865-17750884 | Msa0633050:CDS | 50.0% | |
| AGGTACACTGTCCCCACAAT+AGG | - | chr4_3:17751531-17751550 | Msa0633050:intron | 50.0% | |
| TAAGGAATCAGGGGAGTCGG+AGG | - | chr4_3:17750796-17750815 | Msa0633050:intron | 55.0% | |
| GATGCTGGCAAGTCTACAGC+TGG | - | chr4_3:17751619-17751638 | Msa0633050:intron | 55.0% | |
| TAAGGAATCAGGGGAGTCGG+AGG | - | chr4_3:17750796-17750815 | Msa0633050:intron | 55.0% | |
| GATGCTGGCAAGTCTACAGC+TGG | - | chr4_3:17751619-17751638 | Msa0633050:intron | 55.0% | |
| GCTGGCAAGTCTACAGCTGG+AGG | - | chr4_3:17751622-17751641 | Msa0633050:intron | 60.0% | |
| GCTGGCAAGTCTACAGCTGG+AGG | - | chr4_3:17751622-17751641 | Msa0633050:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 17750173 | 17751726 | 17750173 | ID=Msa0633050;Name=Msa0633050 |
| chr4_3 | mRNA | 17750173 | 17751726 | 17750173 | ID=Msa0633050-mRNA-1;Parent=Msa0633050;Name=Msa0633050-mRNA-1;_AED=0.59;_eAED=0.59;_QI=0|0|0|0.5|0.66|1|4|0|71 |
| chr4_3 | exon | 17751723 | 17751726 | 17751723 | ID=Msa0633050-mRNA-1:exon:5017;Parent=Msa0633050-mRNA-1 |
| chr4_3 | exon | 17751013 | 17751054 | 17751013 | ID=Msa0633050-mRNA-1:exon:5016;Parent=Msa0633050-mRNA-1 |
| chr4_3 | exon | 17750841 | 17750903 | 17750841 | ID=Msa0633050-mRNA-1:exon:5015;Parent=Msa0633050-mRNA-1 |
| chr4_3 | exon | 17750173 | 17750279 | 17750173 | ID=Msa0633050-mRNA-1:exon:5014;Parent=Msa0633050-mRNA-1 |
| chr4_3 | CDS | 17751723 | 17751726 | 17751723 | ID=Msa0633050-mRNA-1:cds;Parent=Msa0633050-mRNA-1 |
| chr4_3 | CDS | 17751013 | 17751054 | 17751013 | ID=Msa0633050-mRNA-1:cds;Parent=Msa0633050-mRNA-1 |
| chr4_3 | CDS | 17750841 | 17750903 | 17750841 | ID=Msa0633050-mRNA-1:cds;Parent=Msa0633050-mRNA-1 |
| chr4_3 | CDS | 17750173 | 17750279 | 17750173 | ID=Msa0633050-mRNA-1:cds;Parent=Msa0633050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
