AlfalfaGEDB | Msa0633980

M. sativa cultivar zhongmu-4 / Msa0633980

KEGG: -
GO: GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0633980	XP_024637152.1	89.905	317	32	0	5	321	4	320	0.0	595

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0633980	sp\|Q9LDQ3\|CRK34_ARATH	24.920	313	207	9	6	306	330	626	7.05e-25	108

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0633960	Msa0633980	0.931289	4.704241e-94	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0633980	MtrunA17_Chr4g0012611	89.905	317	32	0	5	321	4	320	0.0	592
Msa0633980	MtrunA17_Chr4g0012581	88.889	126	14	0	196	321	1	126	1.19e-80	240
Msa0633980	MtrunA17_Chr4g0060531	28.704	324	197	12	12	317	73	380	1.88e-25	105
Msa0633980	MtrunA17_Chr5g0408941	28.296	311	187	10	14	306	85	377	2.23e-25	105
Msa0633980	MtrunA17_Chr1g0213991	27.914	326	190	14	3	305	76	379	3.02e-25	105
Msa0633980	MtrunA17_Chr8g0376131	28.797	316	186	13	8	306	39	332	6.07e-25	103
Msa0633980	MtrunA17_Chr1g0150741	27.922	308	186	11	12	300	73	363	6.68e-25	103
Msa0633980	MtrunA17_Chr8g0344141	30.255	314	178	14	8	300	66	359	2.43e-24	102
Msa0633980	MtrunA17_Chr1g0181821	27.653	311	189	12	12	305	65	356	8.20e-24	100
Msa0633980	MtrunA17_Chr7g0263521	28.025	314	192	12	8	305	60	355	1.82e-23	99.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0633980	AT4G23320.2	25.407	307	201	9	12	306	174	464	5.29e-26	108
Msa0633980	AT4G23320.1	25.407	307	201	9	12	306	174	464	5.29e-26	108
Msa0633980	AT4G23320.3	25.407	307	201	9	12	306	195	485	6.08e-26	108
Msa0633980	AT4G11530.1	24.920	313	207	9	6	306	337	633	7.10e-26	108
Msa0633980	AT4G23240.2	26.333	300	193	11	12	299	19	302	2.43e-24	101
Msa0633980	AT4G23150.1	26.333	300	192	11	6	293	321	603	5.72e-24	102
Msa0633980	AT4G11480.3	25.079	315	206	10	1	302	304	601	6.35e-24	102
Msa0633980	AT4G11480.4	25.079	315	206	10	1	302	301	598	6.89e-24	102
Msa0633980	AT2G39660.1	29.043	303	183	11	17	300	63	352	8.35e-24	100
Msa0633980	AT5G02800.1	27.327	333	194	13	14	318	66	378	2.42e-23	99.4

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Find 43 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATAGTAAATCAAATAACTT+TGG	0.451245	4_3:+20428873	None:intergenic
ACAAACATCTGCAAGAAGAT+TGG	0.408853	4_3:-20428103	Msa0633980:CDS
ACATGTATTGGTGAAAATAT+TGG	0.413060	4_3:-20429806	Msa0633980:CDS
ACATTGTCCAAAGTATCAAG+TGG	0.596853	4_3:+20429529	None:intergenic
ACCAATCAAATTAACTAGAT+TGG	0.340669	4_3:+20429597	None:intergenic
ACTAGGAGGAAGTAAAGTTT+TGG	0.358660	4_3:-20429645	Msa0633980:intron
ACTTGGGAGAGAGATATAAA+AGG	0.305776	4_3:-20429571	Msa0633980:CDS
AGATGATACAAGCTTAAACA+TGG	0.631377	4_3:-20428183	Msa0633980:CDS
AGCAAATCGTCCTTCAATGA+GGG	0.593627	4_3:-20428015	Msa0633980:CDS
AGTACATATTTGGGCTAAAA+AGG	0.262447	4_3:-20428153	Msa0633980:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGTTTAGAGGAAACTTTCA+AGG	-	chr4_3:20428025-20428044	Msa0633980:CDS	30.0%
TGGACAAATCCAAATTTGAA+AGG	-	chr4_3:20428232-20428251	Msa0633980:CDS	30.0%
TTGGACAATGTAATCAAGAA+AGG	-	chr4_3:20428340-20428359	Msa0633980:intron	30.0%
TTTGGTACTCGAATTGTTAA+AGG	-	chr4_3:20428460-20428479	Msa0633980:intron	30.0%
AGAATCCGAGATCAATTTAT+AGG	-	chr4_3:20429238-20429257	Msa0633980:CDS	30.0%
AAATGGACAATGACATTAGT+AGG	+	chr4_3:20429292-20429311	None:intergenic	30.0%
ATGTCTCTTATCATGGATTT+GGG	-	chr4_3:20429333-20429352	Msa0633980:intron	30.0%
AGATGATACAAGCTTAAACA+TGG	-	chr4_3:20429674-20429693	Msa0633980:intron	30.0%
AGTACATATTTGGGCTAAAA+AGG	-	chr4_3:20429704-20429723	Msa0633980:intron	30.0%
TTGTGAACAAGAGAACAATT+TGG	+	chr4_3:20429738-20429757	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	20427923	20429956	20427923	ID=Msa0633980;Name=Msa0633980
chr4_3	mRNA	20427923	20429956	20427923	ID=Msa0633980-mRNA-1;Parent=Msa0633980;Name=Msa0633980-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0\|0\|0\|1\|1\|1\|5\|0\|321
chr4_3	exon	20429747	20429956	20429747	ID=Msa0633980-mRNA-1:exon:5437;Parent=Msa0633980-mRNA-1
chr4_3	exon	20429518	20429662	20429518	ID=Msa0633980-mRNA-1:exon:5436;Parent=Msa0633980-mRNA-1
chr4_3	exon	20429201	20429328	20429201	ID=Msa0633980-mRNA-1:exon:5435;Parent=Msa0633980-mRNA-1
chr4_3	exon	20428796	20428904	20428796	ID=Msa0633980-mRNA-1:exon:5434;Parent=Msa0633980-mRNA-1
chr4_3	exon	20427923	20428296	20427923	ID=Msa0633980-mRNA-1:exon:5433;Parent=Msa0633980-mRNA-1
chr4_3	CDS	20429747	20429956	20429747	ID=Msa0633980-mRNA-1:cds;Parent=Msa0633980-mRNA-1
chr4_3	CDS	20429518	20429662	20429518	ID=Msa0633980-mRNA-1:cds;Parent=Msa0633980-mRNA-1
chr4_3	CDS	20429201	20429328	20429201	ID=Msa0633980-mRNA-1:cds;Parent=Msa0633980-mRNA-1
chr4_3	CDS	20428796	20428904	20428796	ID=Msa0633980-mRNA-1:cds;Parent=Msa0633980-mRNA-1
chr4_3	CDS	20427923	20428296	20427923	ID=Msa0633980-mRNA-1:cds;Parent=Msa0633980-mRNA-1

Gene Sequence

>Msa0633980

ATGGATCCTCCAACAAACCTTGTTCTTTCATCTCAAAACATGCATGAATGTACAAACAATTTCAATCAAAACAATCTCATTGGGTTGACACAGTTTGGAAGATTGTTTAGAGGAAACTTTCAAGGTCAACATGTATTGGTGAAAATATTGGATGATGAAAAGTTGAAGCACATAAGTTCCAAATACAATGATGAGTTTTTGATTATCAAAGAGGAAGTAAAGTTTTGGACAAATCCAAATTTGAAAGGTTGTCCCAATCTAGTTAATTTGATTGGTTATACTTGGGAGAGAGATATAAAAGGGATTGTTTATGATATTAATCCACTTGATACTTTGGACAATGTAATCAAGAAAGATGGCTTAAATTGGCTTCAGAGAATAAATGTAATTCATGAACTTGCTAAGCTCTTGAAATTCATTCATGACCATGAGAAACAAAACATGGTGTTGAATATCAGTGCATCTCATATATTTCTTGATAAGGAATACAAGCCAAAGTTATTTGATTTACTATTGATTAGTGAAGTGAAATTGCTCAAGGAACAATTAACAATGTCAACTAGCTACATTGATCCTTATTTTTCTCTAAGAGGTGGTGAATGGGATAGAAGCTGTGAAGTTTTTACATTTGGCATTATTTTGCTTGAACTAGTAACAAAAAGATCTTCAGATATTGGAAACAAAGATGATACAAGCTTAAACATGGATAATCTAGTACATATTTGGGCTAAAAAGGAGTACAAACCAAATTGTTCTCTTGTTCACAAACATCTGCAAGAAGATTGGCTTTATTGTGCTGAAGATGGTGTTGCTATAACTCGACTTGCTTTGCAGTGCATAGAATTTTTTCCAGCAAATCGTCCTTCAATGAGGGATGTGTTGCAGAATTTAGAAAATCTTTCGGTGTTACGACATTTGTTTGATGCTAGATCAACTAAAAGGGAAAAGAAATTGATTTCAGCATGA

Protein sequence

>Msa0633980

MDPPTNLVLSSQNMHECTNNFNQNNLIGLTQFGRLFRGNFQGQHVLVKILDDEKLKHISSKYNDEFLIIKEEVKFWTNPNLKGCPNLVNLIGYTWERDIKGIVYDINPLDTLDNVIKKDGLNWLQRINVIHELAKLLKFIHDHEKQNMVLNISASHIFLDKEYKPKLFDLLLISEVKLLKEQLTMSTSYIDPYFSLRGGEWDRSCEVFTFGIILLELVTKRSSDIGNKDDTSLNMDNLVHIWAKKEYKPNCSLVHKHLQEDWLYCAEDGVAITRLALQCIEFFPANRPSMRDVLQNLENLSVLRHLFDARSTKREKKLISA*