AlfalfaGEDB | Msa0635140

M. sativa cultivar zhongmu-4 / Msa0635140

KEGG: -
GO: GO:0000139 GO:0000902 GO:0003674 GO:0003824 GO:0004438 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005794 GO:0005811 GO:0006629 GO:0006644 GO:0006650 GO:0006661 GO:0006793 GO:0006796 GO:0006996 GO:0007010 GO:0007033 GO:0007272 GO:0007275 GO:0007399 GO:0007610 GO:0007626 GO:0008150 GO:0008152 GO:0008366 GO:0008610 GO:0008654 GO:0009058 GO:0009653 GO:0009826 GO:0009832 GO:0009987 GO:0010008 GO:0010720 GO:0010927 GO:0010975 GO:0010976 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0022008 GO:0022607 GO:0030154 GO:0030182 GO:0031090 GO:0031344 GO:0031346 GO:0031410 GO:0031641 GO:0031642 GO:0031644 GO:0031645 GO:0031901 GO:0031902 GO:0031982 GO:0031984 GO:0032288 GO:0032501 GO:0032502 GO:0032989 GO:0034593 GO:0034595 GO:0034596 GO:0036092 GO:0040007 GO:0042546 GO:0042552 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043473 GO:0043812 GO:0043813 GO:0044057 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0045595 GO:0045597 GO:0045664 GO:0045666 GO:0046474 GO:0046486 GO:0046488 GO:0048468 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048589 GO:0048646 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051128 GO:0051130 GO:0051239 GO:0051240 GO:0051241 GO:0051960 GO:0051961 GO:0051962 GO:0052744 GO:0052866 GO:0060284 GO:0060560 GO:0065007 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0090407 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0106018 GO:0120035 GO:1901576 GO:2000026
PFAM: PF02383.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0635140	XP_013455242.1	98.581	916	11	1	1	914	1	916	0.0	1882

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0635140	sp\|Q7XZU3\|SAC1_ARATH	75.490	918	214	6	1	914	1	911	0.0	1441

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0635140	A0A072UJJ8	98.581	916	11	1	1	914	1	916	0.0	1882

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0539310	Msa0635140	0.913046	9.684324e-84	-8.615850e-47
Msa0635140	Msa1425890	0.804285	2.324204e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0635140	MtrunA17_Chr4g0014511	98.581	916	11	1	1	914	1	916	0.0	1882
Msa0635140	MtrunA17_Chr4g0069981	47.481	794	358	13	21	795	10	763	0.0	723
Msa0635140	MtrunA17_Chr8g0344911	53.895	629	267	6	40	659	32	646	0.0	681
Msa0635140	MtrunA17_Chr5g0406801	29.967	307	187	10	111	409	63	349	3.54e-30	127
Msa0635140	MtrunA17_Chr5g0406801	35.659	129	81	2	511	638	389	516	1.91e-14	77.4
Msa0635140	MtrunA17_Chr4g0045791	25.051	487	262	18	128	583	93	507	2.27e-24	110
Msa0635140	MtrunA17_Chr7g0242661	30.052	193	117	4	246	438	10	184	1.45e-13	73.9
Msa0635140	MtrunA17_Chr7g0242661	29.197	137	95	2	511	646	196	331	2.02e-11	67.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0635140	AT1G22620.1	75.490	918	214	6	1	914	1	911	0.0	1441
Msa0635140	AT3G14205.1	53.155	634	283	4	32	662	11	633	0.0	701
Msa0635140	AT3G43220.2	52.039	613	283	3	36	647	11	613	0.0	661
Msa0635140	AT3G43220.1	52.039	613	283	3	36	647	11	613	0.0	661
Msa0635140	AT3G43220.3	52.039	613	283	3	36	647	11	613	0.0	661
Msa0635140	AT5G20840.1	45.925	773	375	11	39	800	23	763	0.0	660
Msa0635140	AT1G17340.1	42.911	790	382	13	39	820	18	746	0.0	609
Msa0635140	AT3G14205.2	53.305	469	205	4	197	662	1	458	1.19e-169	508
Msa0635140	AT3G51830.1	28.135	327	211	8	102	423	52	359	6.03e-32	132
Msa0635140	AT3G51830.1	34.351	131	84	2	511	640	385	514	3.25e-14	77.0

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Find 222 sgRNAs with CRISPR-Local

Find 765 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGGAGTGAATGATCG+AGG	0.618530	4_3:+23330237	Msa0635140:CDS
AAAGGGGAGTGAATGATCGA+GGG	0.636308	4_3:+23330238	Msa0635140:CDS
AAATGTAGACAGTTGAGAAA+AGG	0.505433	4_3:+23331708	Msa0635140:intron
AAATTAAGAGTTTGCTTCAG+CGG	0.533721	4_3:+23325518	Msa0635140:CDS
AACCAAAGCTATAGTCCATA+TGG	0.447803	4_3:-23327707	None:intergenic
AACCAAATCTTAACTCTTCT+GGG	0.378330	4_3:+23334739	Msa0635140:CDS
AACCACCTCGTCAACCAACT+TGG	0.501393	4_3:-23337142	None:intergenic
AACCGATATTGAGGGATGTC+AGG	0.498474	4_3:+23336123	Msa0635140:CDS
AACCTTCTTCATACTTTCTC+TGG	0.369565	4_3:-23336072	None:intergenic
AACGAGTCCAATGGTTGGTA+CGG	0.552073	4_3:+23336424	Msa0635140:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTGTTGAATTTCAAATTCGA+TGG	-	chr4_3:23325137-23325156	None:intergenic	30.0%
GTGATATCTCATGTCAAAAT+CGG	+	chr4_3:23325156-23325175	Msa0635140:exon	30.0%
TCAAAATCGGAGAATTCAAT+GGG	+	chr4_3:23325169-23325188	Msa0635140:CDS	30.0%
TTTCTGCGAGTATATTACAA+CGG	-	chr4_3:23325905-23325924	None:intergenic	30.0%
TTTGCAGTTTATATCATGAG+TGG	+	chr4_3:23326167-23326186	Msa0635140:intron	30.0%
AGCACCTATTGTAGTAAATA+TGG	+	chr4_3:23326470-23326489	Msa0635140:intron	30.0%
ACCTATTGTAGTAAATATGG+TGG	+	chr4_3:23326473-23326492	Msa0635140:intron	30.0%
TCCACCATATTTACTACAAT+AGG	-	chr4_3:23326477-23326496	None:intergenic	30.0%
ACAAATGTTATTAACGGGAT+TGG	+	chr4_3:23327133-23327152	Msa0635140:intron	30.0%
CAAATGTTATTAACGGGATT+GGG	+	chr4_3:23327134-23327153	Msa0635140:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	23324906	23337531	23324906	ID=Msa0635140;Name=Msa0635140
chr4_3	mRNA	23324906	23337531	23324906	ID=Msa0635140-mRNA-1;Parent=Msa0635140;Name=Msa0635140-mRNA-1;_AED=0.10;_eAED=0.10;_QI=260\|1\|1\|1\|1\|1\|16\|336\|914
chr4_3	exon	23324906	23325315	23324906	ID=Msa0635140-mRNA-1:exon:6011;Parent=Msa0635140-mRNA-1
chr4_3	exon	23325400	23325604	23325400	ID=Msa0635140-mRNA-1:exon:6012;Parent=Msa0635140-mRNA-1
chr4_3	exon	23327265	23327430	23327265	ID=Msa0635140-mRNA-1:exon:6013;Parent=Msa0635140-mRNA-1
chr4_3	exon	23327525	23327747	23327525	ID=Msa0635140-mRNA-1:exon:6014;Parent=Msa0635140-mRNA-1
chr4_3	exon	23329864	23329940	23329864	ID=Msa0635140-mRNA-1:exon:6015;Parent=Msa0635140-mRNA-1
chr4_3	exon	23330230	23330417	23330230	ID=Msa0635140-mRNA-1:exon:6016;Parent=Msa0635140-mRNA-1
chr4_3	exon	23330522	23330619	23330522	ID=Msa0635140-mRNA-1:exon:6017;Parent=Msa0635140-mRNA-1
chr4_3	exon	23331716	23331849	23331716	ID=Msa0635140-mRNA-1:exon:6018;Parent=Msa0635140-mRNA-1
chr4_3	exon	23331961	23332092	23331961	ID=Msa0635140-mRNA-1:exon:6019;Parent=Msa0635140-mRNA-1
chr4_3	exon	23333148	23333532	23333148	ID=Msa0635140-mRNA-1:exon:6020;Parent=Msa0635140-mRNA-1
chr4_3	exon	23333650	23333771	23333650	ID=Msa0635140-mRNA-1:exon:6021;Parent=Msa0635140-mRNA-1
chr4_3	exon	23334117	23334227	23334117	ID=Msa0635140-mRNA-1:exon:6022;Parent=Msa0635140-mRNA-1
chr4_3	exon	23334734	23334946	23334734	ID=Msa0635140-mRNA-1:exon:6023;Parent=Msa0635140-mRNA-1
chr4_3	exon	23336036	23336215	23336036	ID=Msa0635140-mRNA-1:exon:6024;Parent=Msa0635140-mRNA-1
chr4_3	exon	23336402	23336513	23336402	ID=Msa0635140-mRNA-1:exon:6025;Parent=Msa0635140-mRNA-1
chr4_3	exon	23336947	23337531	23336947	ID=Msa0635140-mRNA-1:exon:6026;Parent=Msa0635140-mRNA-1
chr4_3	five_prime_UTR	23324906	23325165	23324906	ID=Msa0635140-mRNA-1:five_prime_utr;Parent=Msa0635140-mRNA-1
chr4_3	CDS	23325166	23325315	23325166	ID=Msa0635140-mRNA-1:cds;Parent=Msa0635140-mRNA-1
chr4_3	CDS	23325400	23325604	23325400	ID=Msa0635140-mRNA-1:cds;Parent=Msa0635140-mRNA-1
chr4_3	CDS	23327265	23327430	23327265	ID=Msa0635140-mRNA-1:cds;Parent=Msa0635140-mRNA-1
chr4_3	CDS	23327525	23327747	23327525	ID=Msa0635140-mRNA-1:cds;Parent=Msa0635140-mRNA-1
chr4_3	CDS	23329864	23329940	23329864	ID=Msa0635140-mRNA-1:cds;Parent=Msa0635140-mRNA-1
chr4_3	CDS	23330230	23330417	23330230	ID=Msa0635140-mRNA-1:cds;Parent=Msa0635140-mRNA-1
chr4_3	CDS	23330522	23330619	23330522	ID=Msa0635140-mRNA-1:cds;Parent=Msa0635140-mRNA-1
chr4_3	CDS	23331716	23331849	23331716	ID=Msa0635140-mRNA-1:cds;Parent=Msa0635140-mRNA-1
chr4_3	CDS	23331961	23332092	23331961	ID=Msa0635140-mRNA-1:cds;Parent=Msa0635140-mRNA-1
chr4_3	CDS	23333148	23333532	23333148	ID=Msa0635140-mRNA-1:cds;Parent=Msa0635140-mRNA-1
chr4_3	CDS	23333650	23333771	23333650	ID=Msa0635140-mRNA-1:cds;Parent=Msa0635140-mRNA-1
chr4_3	CDS	23334117	23334227	23334117	ID=Msa0635140-mRNA-1:cds;Parent=Msa0635140-mRNA-1
chr4_3	CDS	23334734	23334946	23334734	ID=Msa0635140-mRNA-1:cds;Parent=Msa0635140-mRNA-1
chr4_3	CDS	23336036	23336215	23336036	ID=Msa0635140-mRNA-1:cds;Parent=Msa0635140-mRNA-1
chr4_3	CDS	23336402	23336513	23336402	ID=Msa0635140-mRNA-1:cds;Parent=Msa0635140-mRNA-1
chr4_3	CDS	23336947	23337195	23336947	ID=Msa0635140-mRNA-1:cds;Parent=Msa0635140-mRNA-1
chr4_3	three_prime_UTR	23337196	23337531	23337196	ID=Msa0635140-mRNA-1:three_prime_utr;Parent=Msa0635140-mRNA-1

Gene Sequence

>Msa0635140

ATGTCAAAATCGGAGAATTCAATGGGATTAGGATCAACAACATCAACAACATCATCTCTATCATCCAAAATTCACCCTTCCAATCATCCACCAGAACTCGATCCTTCTTCCTACGCTCTTGAAAAATTCAAACTCTACGAAACCAGAGCGAGGTTTTACTTAATTGGAAGTGATCGGAACAAGAGATTCTTTCGTGTATTGAAAATCGATCGATCAGAACAGTCTGATCTTAGTATTAGTCAAGATCCTGTTTTGTATTCGCAGCAGGAAATTAAGAGTTTGCTTCAGCGGATTGCCGAAGGTAATCGAGCTACCGGTGGACTTACTTTCGTCGCTAAAGTTTTTGGAATTGCAGGCTGCATCAAGTTTCTCGAGTCTTACTATTTGATTCTCGTTACTAAGCGCAGACAAATTGGTTCTATATGTGGCCATGCAATTTATAGCATCAAGGAGAGCCAATTGATTACAATTCCACATGTGTCAATTCAATCTGATTTAGCTCACTCTAAAACTGAGCTAAGATACAAAAAACTTTTGTCCAGTGTTGATTTGACCAAGGATTTCTTCTTTAGTTATACTTACCCTATAATGCAAAGTTTGCAAAAGAACGTCTCATCCGATCAAGAAGAAGGGATGCCATACGATAATATATTTGTCTGGAATGCTTATTTGACACAAGCTATCAGATCTAGATGCAATAACACCATATGGACTATAGCTTTGGTTCATGGCCATTTTAGGCAGGCTCGCTTATCGATCTTTGGGAGGGACTTCAGTGTTTCCTTGATTTCTCGACGCTCTAGACATTTTGCAGGGACACGTTACTTGAAAAGGGGAGTGAATGATCGAGGGAGGGTTGCTAATGATGTTGAGACAGAGCAGATTGTCCTTGATGAAGAAGCTGGCTGCTGCAAGGGCAAAATGAGTTCAGTTGTGCAAATGCGTGGATCGATACCGCTTTTCTGGTCACAAGAAGCATCAAGATTTAGCCCTAAGCCTGACATAATTTTGCAGAGATATGATCCAACATACCAGGCAACAAAATTCCATTTTGAAGACCTTGCTGAGAGATATGGCAATCCAATTATTGTTCTTAATTTGATCAAGACAGTTGAGAAAAGGCCTCGAGAAATGATGCTGAGGCGTGAATTTGCAAATGCTGTTGGGTATCTGAACCAAATTCTACCAGCAGAGAGCCATCTTAGATTTATTCACTGGGACTTTCACAAGTTTGCAAAAACCAAGTCGGCCAATGTTTTGGCAGTTCTAGGAGCTGTAGCAAGTGAAGCACTTGATTTAACAAGTTTTTACTATAGTGGCAAGCCCAACATCGTAAAGAGGGCAAACAAGAGTAATCGAACAAGCACAGGAAGGGATGCTTCGTTGAGAGATCTGACAGCTAGTTCTGGGGATCTTGCAAGGCTTGGAATCAGTAGTGAAGGGCTAAATTCTATGGCTAATCGAGATAGAGAGACTGACATGAATCATCAGAACAAAGATGATTATTTTAATAGTGATACACCACATTTTCAGAGTGGAGTTCTCCGTACCAACTGCATTGACTGCTTGGACCGTACAAATGTCGCCCAATATGCTTATGGCCTACAAGCTTTAGGACGCCAGCTTCATGCAATGGGTTTGTCTGATGTGCCAAAAGTGGATCCTGACAGTAGTATTGCAGCAGCTCTAATGGATATGTATCAAAGTATGGGAGATGCTCTTGCGCAGCAGTATGGTGGTTCTGCAGCTCACAATACTGTGTTTCCAGAGAGGCAGGGAAAGTGGAAAGCAACGACACAATCAAGAGAATTTTTAAAATCCATAAAACGATATTACAGTAATGCTTACACGGATGGTGAAAAACAAGATGCAATAAACTTATTCTTAGGTTACTTCAAACCACAGGAAGGAAAACCTGCTCTATGGGAGCTTGATTCAGATTATTATCTCCATGTATCTGGCATTGGAGATGATCTTTTTCCTGAGAAGTTTTCTGAACCAAATCTTAACTCTTCTGGGAGAGACGGAACAATCTTCACCCCTGTACCAGCTTGCAGAGATGATTTCTCACGCATAAAGCTGACATCATTTGACAAGTTAATTGAAAAGACCTGTAGTACAATTAAAAATGTAAGGCTTTCCTGCGAACCTGATCAGAAGCCAGGTGGAGTTTCTGGAAACAGTGGTGTAGCACCTGATGCAGCTGAGATACAGCTTAAAAGCCCAAATTGGCTTTTTGGCCAGAGAAAGTATGAAGAAGGTTCCTCTGCTGCAAAAGTTGCTTCTAGTGAAACCGATATTGAGGGATGTCAGGCTAATGACTTTTGCAACTTGAATTGGCTTTCCTCTGGTAATGATATGAATGAAGAGGATGTTTTTCAAAGGTACTTTACAATGACCTCAGCAAACGAGTCCAATGGTTGGTACGGAGGCACCCTCCTTGGTGATCAAGATGAAAGCAGTGAGATATATAGACATTATGCTGAGTTATGTCAGGGACCTGCCTTTGAACTTTTCCAAGATGATCATGAAAGAGAGCAACACTACGCGGATGCTCTAAGCATGAGTTCATTTGAAATTATTAATGAAGCTGGTGTTGCAGCAGAGATGGAAGCAGCTCTAAAGGAGTATGACCAAGTTGGTGCTGACCTTGGGATCATTCCCTCATCTTGTAAATTCTTCGCTGATGATCCAAGTTGGTTGACGAGGTGGTTAATTGGGGACGAAAAAGTACCCAGGATATGA

Protein sequence

>Msa0635140

MSKSENSMGLGSTTSTTSSLSSKIHPSNHPPELDPSSYALEKFKLYETRARFYLIGSDRNKRFFRVLKIDRSEQSDLSISQDPVLYSQQEIKSLLQRIAEGNRATGGLTFVAKVFGIAGCIKFLESYYLILVTKRRQIGSICGHAIYSIKESQLITIPHVSIQSDLAHSKTELRYKKLLSSVDLTKDFFFSYTYPIMQSLQKNVSSDQEEGMPYDNIFVWNAYLTQAIRSRCNNTIWTIALVHGHFRQARLSIFGRDFSVSLISRRSRHFAGTRYLKRGVNDRGRVANDVETEQIVLDEEAGCCKGKMSSVVQMRGSIPLFWSQEASRFSPKPDIILQRYDPTYQATKFHFEDLAERYGNPIIVLNLIKTVEKRPREMMLRREFANAVGYLNQILPAESHLRFIHWDFHKFAKTKSANVLAVLGAVASEALDLTSFYYSGKPNIVKRANKSNRTSTGRDASLRDLTASSGDLARLGISSEGLNSMANRDRETDMNHQNKDDYFNSDTPHFQSGVLRTNCIDCLDRTNVAQYAYGLQALGRQLHAMGLSDVPKVDPDSSIAAALMDMYQSMGDALAQQYGGSAAHNTVFPERQGKWKATTQSREFLKSIKRYYSNAYTDGEKQDAINLFLGYFKPQEGKPALWELDSDYYLHVSGIGDDLFPEKFSEPNLNSSGRDGTIFTPVPACRDDFSRIKLTSFDKLIEKTCSTIKNVRLSCEPDQKPGGVSGNSGVAPDAAEIQLKSPNWLFGQRKYEEGSSAAKVASSETDIEGCQANDFCNLNWLSSGNDMNEEDVFQRYFTMTSANESNGWYGGTLLGDQDESSEIYRHYAELCQGPAFELFQDDHEREQHYADALSMSSFEIINEAGVAAEMEAALKEYDQVGADLGIIPSSCKFFADDPSWLTRWLIGDEKVPRI*