AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0637530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0637530 MtrunA17_Chr4g0020581 98.690 458 6 0 1 458 1 458 0.0 932
Msa0637530 MtrunA17_Chr7g0257111 84.444 450 70 0 8 457 8 457 0.0 797
Msa0637530 MtrunA17_Chr6g0458181 26.225 408 208 19 29 413 19 356 1.77e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0637530 AT2G41540.3 84.000 450 72 0 7 456 12 461 0.0 770
Msa0637530 AT2G41540.1 84.000 450 72 0 7 456 12 461 0.0 770
Msa0637530 AT2G41540.4 84.000 450 72 0 7 456 12 461 0.0 770
Msa0637530 AT2G41540.2 84.000 450 72 0 7 456 12 461 0.0 770
Msa0637530 AT3G07690.2 82.955 440 75 0 19 458 17 456 0.0 769
Msa0637530 AT3G07690.1 81.111 450 75 1 19 458 17 466 0.0 760
Msa0637530 AT5G40610.1 26.988 415 217 20 30 426 48 394 7.39e-15 76.6

Find 142 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTCTTAGTTTGTATTAA+TGG 0.134992 4_3:-29180814 Msa0637530:five_prime_UTR
CTTTCTTAGTTTGTATTAAT+GGG 0.164369 4_3:-29180813 Msa0637530:five_prime_UTR
CAACTTTGTTGGAGGAATTC+TGG 0.211226 4_3:+29176880 None:intergenic
AATGTTGAACTCTGTTATTC+AGG 0.229162 4_3:-29176845 Msa0637530:three_prime_UTR
CATCATCAACTTTCCCCATT+AGG 0.251148 4_3:+29180583 None:intergenic
GGTTCTCTTCAAAGTGTAAA+TGG 0.275107 4_3:-29180639 Msa0637530:CDS
ATCATCAACTTTCCCCATTA+GGG 0.290579 4_3:+29180584 None:intergenic
TATATAAAATACTAATATTA+AGG 0.295699 4_3:-29177810 Msa0637530:intron
AACATGCATTGAAGAGAAAA+AGG 0.300503 4_3:+29180859 None:intergenic
ATACTTGCCTGTGTAGTTAT+CGG 0.315735 4_3:-29176782 Msa0637530:three_prime_UTR
TTGTGTTGGAGGTGGTGCTT+GGG 0.318205 4_3:-29180544 Msa0637530:CDS
TTTGTGTTGGAGGTGGTGCT+TGG 0.332168 4_3:-29180545 Msa0637530:CDS
ATTGAAAATATTCTCTATCT+TGG 0.332464 4_3:-29179784 Msa0637530:CDS
TGAAAGCAAGCTTAATTTGT+TGG 0.333432 4_3:-29180712 Msa0637530:five_prime_UTR
TGATGCTGTCACCCATTTCA+AGG 0.343219 4_3:+29178064 None:intergenic
TCGAGGGGAGATTAGGTGAT+AGG 0.347018 4_3:-29180335 Msa0637530:CDS
AGTTCCTGTCATTATTTCAT+TGG 0.352790 4_3:-29180118 Msa0637530:CDS
CAAGGGCAAGGGGATGATTC+AGG 0.359334 4_3:-29178043 Msa0637530:intron
TGTCATTATTTCATTGGCTA+AGG 0.362222 4_3:-29180112 Msa0637530:CDS
ATTTGTTGGTGTGGTGTCAT+TGG 0.365094 4_3:-29180698 Msa0637530:five_prime_UTR
TTCAAGGCTCAATTCTCCTT+TGG 0.370084 4_3:+29178080 None:intergenic
AGAGGGCCTGCAAGTTTCTC+TGG 0.371971 4_3:+29178165 None:intergenic
TTGGTTGTGTCTATTGGTAC+TGG 0.373803 4_3:-29176910 Msa0637530:three_prime_UTR
TAAGGGTGTGGAGGCTGAAT+TGG 0.382414 4_3:-29180094 Msa0637530:CDS
GAAGAACCAGAGAAACTTGC+AGG 0.385116 4_3:-29178171 Msa0637530:CDS
TACACCTGTTTGCCCTTTGA+AGG 0.390970 4_3:-29180259 Msa0637530:CDS
CACAAGAGACGAGGATTCTA+AGG 0.391204 4_3:+29177156 None:intergenic
AGGAGAATTGAGCCTTGAAA+TGG 0.391296 4_3:-29178076 Msa0637530:CDS
GAAGGTTGTGACGAATTTGC+AGG 0.392149 4_3:-29180241 Msa0637530:CDS
ATGTGTTGAGGAGGTTGATT+AGG 0.393435 4_3:-29180380 Msa0637530:CDS
TCTTGTTACTCATGAAGTTA+TGG 0.394359 4_3:-29179629 Msa0637530:CDS
TTGAAGAAATTAGTAAGTAT+TGG 0.395541 4_3:-29180155 Msa0637530:CDS
GTTGGTGTGGTGTCATTGGT+TGG 0.396981 4_3:-29180694 Msa0637530:five_prime_UTR
GCTCTATCAACAGCTCTTCC+TGG 0.408239 4_3:+29180444 None:intergenic
TTAAAGAATGTATATGCTAT+TGG 0.411177 4_3:-29179601 Msa0637530:CDS
GATGAGCTTAGAACCCTAAT+GGG 0.411719 4_3:-29180597 Msa0637530:CDS
CAGAAAACTAACTCACAAAC+TGG 0.412055 4_3:+29176740 None:intergenic
TGATGAGCTTAGAACCCTAA+TGG 0.413049 4_3:-29180598 Msa0637530:CDS
CTTGTTACTCATGAAGTTAT+GGG 0.422177 4_3:-29179628 Msa0637530:CDS
CGAATTTGCAGGAAGCTGTA+TGG 0.426348 4_3:-29180230 Msa0637530:CDS
AAATATGTCGAGGGGAGATT+AGG 0.426665 4_3:-29180342 Msa0637530:CDS
TAAATCTCGGAGGCAATGTT+AGG 0.432930 4_3:+29179757 None:intergenic
GGTGTTATGATCCGCGGCTC+AGG 0.435974 4_3:+29180069 None:intergenic
ACGGTCTCGAGGATCGTTCA+TGG 0.439816 4_3:+29177233 None:intergenic
TGTGTAGTTATCGGTATAAC+TGG 0.442096 4_3:-29176773 Msa0637530:three_prime_UTR
AAGATGGGACAAAGCTCGAC+AGG 0.442551 4_3:+29177841 None:intergenic
ATATTCTTTGTTGTAAATCT+CGG 0.448562 4_3:+29179744 None:intergenic
TTAGAATCCTCGTCTCTTGT+GGG 0.450593 4_3:-29177154 Msa0637530:exon
TTGGTGTGGTGTCATTGGTT+GGG 0.450973 4_3:-29180693 Msa0637530:five_prime_UTR
AAATACCAAGACAACTTTGT+TGG 0.451938 4_3:+29176869 None:intergenic
CTTAGAATCCTCGTCTCTTG+TGG 0.453089 4_3:-29177155 Msa0637530:exon
GAAACTTGCAGGCCCTCTCT+TGG 0.454109 4_3:-29178160 Msa0637530:CDS
TATTTCATTGGCTAAGGGTG+TGG 0.456675 4_3:-29180106 Msa0637530:CDS
GCTTGAAGTATAGCCTGTAC+TGG 0.457035 4_3:+29177270 None:intergenic
GTCATTATTTCATTGGCTAA+GGG 0.457401 4_3:-29180111 Msa0637530:CDS
TTTATATAACATCTTCAAGA+TGG 0.462752 4_3:+29177825 None:intergenic
TAATACAAACTAAGAAAGAA+AGG 0.473727 4_3:+29180818 None:intergenic
TTCCTCCAACAAAGTTGTCT+TGG 0.474927 4_3:-29176874 Msa0637530:three_prime_UTR
ACAACCTTCAAAGGGCAAAC+AGG 0.479400 4_3:+29180255 None:intergenic
GAAAATATTCTCTATCTTGG+AGG 0.480816 4_3:-29179781 Msa0637530:CDS
GGCTCTGTGCAATCTTAATA+CGG 0.483487 4_3:+29177214 None:intergenic
GCTATGTTACAAGAGGCTTA+TGG 0.483493 4_3:-29180507 Msa0637530:CDS
GGGTGACAGCATCAAGGGCA+AGG 0.485731 4_3:-29178055 Msa0637530:CDS
GGCAAAGTAGACTGATTTGC+TGG 0.487927 4_3:+29178236 None:intergenic
AATGTATATGCTATTGGAGC+AGG 0.498847 4_3:-29179595 Msa0637530:intron
TTGAGAATAGTTTGTGTTGG+AGG 0.502821 4_3:-29180555 Msa0637530:CDS
TTATATAACATCTTCAAGAT+GGG 0.503001 4_3:+29177826 None:intergenic
AACCATCATGGATACTCAAA+TGG 0.503751 4_3:-29180660 Msa0637530:CDS
TTCATTGGCTAAGGGTGTGG+AGG 0.505926 4_3:-29180103 Msa0637530:CDS
AAATTCGTCACAACCTTCAA+AGG 0.506986 4_3:+29180246 None:intergenic
TAATTTCTTCAAACACCTCA+CGG 0.507384 4_3:+29180166 None:intergenic
GTTTGAAGTGATTAATTCGA+GGG 0.516179 4_3:-29180406 Msa0637530:CDS
CCAACACAAACTATTCTCAA+TGG 0.516452 4_3:+29180558 None:intergenic
AAAGGTCGTAATGCATGGTA+TGG 0.519099 4_3:-29178114 Msa0637530:CDS
GGAGAATTGAGCCTTGAAAT+GGG 0.522487 4_3:-29178075 Msa0637530:CDS
TATGCAAATGCTCGAATATG+TGG 0.524238 4_3:-29179724 Msa0637530:CDS
CTTCAGGGAATCTCCAGTAC+AGG 0.526916 4_3:-29177283 Msa0637530:intron
TACCAAGACAACTTTGTTGG+AGG 0.526917 4_3:+29176872 None:intergenic
TTTCTTAGTTTGTATTAATG+GGG 0.527620 4_3:-29180812 Msa0637530:five_prime_UTR
AGGATCTAAGACATTTAAGC+TGG 0.528053 4_3:+29177885 None:intergenic
ACCTCACGGGTTTCTGTCGA+TGG 0.528482 4_3:+29180180 None:intergenic
TGCATGGTATGGACAAAAGT+TGG 0.531855 4_3:-29178103 Msa0637530:CDS
GATGCTGACATTGTGATTAA+CGG 0.537235 4_3:-29180207 Msa0637530:CDS
GGTGACAGCATCAAGGGCAA+GGG 0.540284 4_3:-29178054 Msa0637530:CDS
AGTATGGGTGGGTGTGTTGT+CGG 0.541935 4_3:+29181018 None:intergenic
AATTTCTTCAAACACCTCAC+GGG 0.548801 4_3:+29180167 None:intergenic
CGAGGGGAGATTAGGTGATA+GGG 0.549275 4_3:-29180334 Msa0637530:CDS
CCATTGAGAATAGTTTGTGT+TGG 0.551150 4_3:-29180558 Msa0637530:CDS
AACAGAAGAAACAGTATGGG+TGG 0.552754 4_3:+29181006 None:intergenic
GGCTGCTGACCAAGAAGAGA+TGG 0.553433 4_3:+29177177 None:intergenic
AATACAAACTAAGAAAGAAA+GGG 0.554207 4_3:+29180819 None:intergenic
AGAATAGTTTGTGTTGGAGG+TGG 0.557952 4_3:-29180552 Msa0637530:CDS
GGCAGGCGCACTTTATAGTG+TGG 0.559562 4_3:-29179663 Msa0637530:CDS
TGAAATGGGTGACAGCATCA+AGG 0.560053 4_3:-29178061 Msa0637530:CDS
TGTGTTGGAGGTGGTGCTTG+GGG 0.568789 4_3:-29180543 Msa0637530:CDS
ACTTATGTAACCTTGTTGAA+AGG 0.569017 4_3:-29178132 Msa0637530:CDS
AATTCGTCACAACCTTCAAA+GGG 0.569811 4_3:+29180247 None:intergenic
GAAATGGGTGACAGCATCAA+GGG 0.570576 4_3:-29178060 Msa0637530:CDS
TGAAGTGATTAATTCGAGGG+AGG 0.572910 4_3:-29180403 Msa0637530:CDS
TGTTTGAAGTGATTAATTCG+AGG 0.574810 4_3:-29180407 Msa0637530:CDS
GAATTTGCAGGAAGCTGTAT+GGG 0.578928 4_3:-29180229 Msa0637530:CDS
TTAGCCAATGAAATAATGAC+AGG 0.582773 4_3:+29180114 None:intergenic
AATCATCTCTGATGTGCAGT+GGG 0.583743 4_3:+29178215 None:intergenic
GTGACAGCATCAAGGGCAAG+GGG 0.585669 4_3:-29178053 Msa0637530:CDS
AACCATTTGAGTATCCATGA+TGG 0.585718 4_3:+29180658 None:intergenic
GTTTACAGCTATGTTACAAG+AGG 0.586719 4_3:-29180514 Msa0637530:CDS
GGATCAAAGATGAACCATCA+TGG 0.587501 4_3:-29180672 Msa0637530:exon
GCAAGCTTAATTTGTTGGTG+TGG 0.588337 4_3:-29180707 Msa0637530:five_prime_UTR
CGAGGGAGGATGTGTTGAGG+AGG 0.589261 4_3:-29180389 Msa0637530:CDS
TGTTGAAAGGTCGTAATGCA+TGG 0.592104 4_3:-29178119 Msa0637530:CDS
GTTACTCATGAAGTTATGGG+TGG 0.597858 4_3:-29179625 Msa0637530:CDS
TTCAAACAAATGCGTAGCCG+TGG 0.598990 4_3:+29180422 None:intergenic
ATTAGGATATGGAGAAGACC+AGG 0.601604 4_3:-29180462 Msa0637530:CDS
TGCGTATTTGAAATATGTCG+AGG 0.602106 4_3:-29180352 Msa0637530:CDS
ATTCAGGCAAACTTCAGCGA+AGG 0.603924 4_3:-29176829 Msa0637530:three_prime_UTR
GCAGGCGCACTTTATAGTGT+GGG 0.608719 4_3:-29179662 Msa0637530:CDS
TTACAAATCTAAAACAACAA+TGG 0.609126 4_3:+29180890 None:intergenic
CTGAATTGGTTCCTGAGCCG+CGG 0.610242 4_3:-29180080 Msa0637530:CDS
GCGTATTTGAAATATGTCGA+GGG 0.611600 4_3:-29180351 Msa0637530:CDS
AAATCATCTCTGATGTGCAG+TGG 0.612190 4_3:+29178214 None:intergenic
AGATGGGACAAAGCTCGACA+GGG 0.616695 4_3:+29177842 None:intergenic
TTCTTTGTTGTAAATCTCGG+AGG 0.618426 4_3:+29179747 None:intergenic
CATAAGTATCAGCCAAGAGA+GGG 0.625499 4_3:+29178148 None:intergenic
ACATAAGTATCAGCCAAGAG+AGG 0.630335 4_3:+29178147 None:intergenic
TGCATTACGACCTTTCAACA+AGG 0.634314 4_3:+29178122 None:intergenic
GCTGACCAAGAAGAGATGGC+CGG 0.634478 4_3:+29177181 None:intergenic
ATTCGAGGGAGGATGTGTTG+AGG 0.636238 4_3:-29180392 Msa0637530:CDS
AGCGTAGGTGTTATGATCCG+CGG 0.638818 4_3:+29180063 None:intergenic
TCTAAAACAACAATGGAGAG+AGG 0.642235 4_3:+29180897 None:intergenic
ACAGAAGAAACAGTATGGGT+GGG 0.643902 4_3:+29181007 None:intergenic
TGCAAAACCCACAAGAGACG+AGG 0.645091 4_3:+29177147 None:intergenic
AAGAGCTGTTGATAGAGCCA+CGG 0.655534 4_3:-29180439 Msa0637530:CDS
TATGGACAAAAGTTGGCCAA+AGG 0.655927 4_3:-29178096 Msa0637530:CDS
GCTCGACTGATCATTAGCGT+AGG 0.663687 4_3:+29180048 None:intergenic
CGTATTTGAAATATGTCGAG+GGG 0.666107 4_3:-29180350 Msa0637530:CDS
AGTTATACCGATAACTACAC+AGG 0.670861 4_3:+29176775 None:intergenic
GAGATGGCCGGTAAAACACA+TGG 0.670898 4_3:+29177193 None:intergenic
ATGAGCTTAGAACCCTAATG+GGG 0.672787 4_3:-29180596 Msa0637530:CDS
GCAATCTTAATACGGTCTCG+AGG 0.681700 4_3:+29177222 None:intergenic
GATGGGACAAAGCTCGACAG+GGG 0.689704 4_3:+29177843 None:intergenic
AAAGTAGACTGATTTGCTGG+TGG 0.693461 4_3:+29178239 None:intergenic
GCCATCGACAGAAACCCGTG+AGG 0.775448 4_3:-29180181 Msa0637530:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGTTTAAAATTTCATTTT+GGG - chr4_3:29178465-29178484 Msa0637530:intron 10.0%
!! ATTTAATATTCAAAAAATGA+GGG + chr4_3:29179212-29179231 None:intergenic 10.0%
!! TATTTAATATTCAAAAAATG+AGG + chr4_3:29179213-29179232 None:intergenic 10.0%
!!! ATAATATTTTGAATTTTAGT+TGG - chr4_3:29180754-29180773 Msa0637530:five_prime_UTR 10.0%
!!! TAGTTAAAATTTCATGTTTT+TGG - chr4_3:29176905-29176924 Msa0637530:three_prime_UTR 15.0%
!!! CATTGTTTAAAATTTCATTT+TGG - chr4_3:29178464-29178483 Msa0637530:intron 15.0%
!! ATTTCAATAATATTTCCTAT+TGG + chr4_3:29180282-29180301 None:intergenic 15.0%
!!! TTACAAATCTAAAACAACAA+TGG + chr4_3:29176796-29176815 None:intergenic 20.0%
!! AATACAAACTAAGAAAGAAA+GGG + chr4_3:29176867-29176886 None:intergenic 20.0%
!! TAATACAAACTAAGAAAGAA+AGG + chr4_3:29176868-29176887 None:intergenic 20.0%
!!! TCTTTCTTAGTTTGTATTAA+TGG - chr4_3:29176869-29176888 Msa0637530:three_prime_UTR 20.0%
!!! CTTTCTTAGTTTGTATTAAT+GGG - chr4_3:29176870-29176889 Msa0637530:three_prime_UTR 20.0%
!!! TTTCTTAGTTTGTATTAATG+GGG - chr4_3:29176871-29176890 Msa0637530:three_prime_UTR 20.0%
!! TTGAAGAAATTAGTAAGTAT+TGG - chr4_3:29177528-29177547 Msa0637530:intron 20.0%
!!! AGATAGAGAATATTTTCAAT+GGG + chr4_3:29177899-29177918 None:intergenic 20.0%
!!! AAGATAGAGAATATTTTCAA+TGG + chr4_3:29177900-29177919 None:intergenic 20.0%
!! ATTGAAAATATTCTCTATCT+TGG - chr4_3:29177899-29177918 Msa0637530:CDS 20.0%
!!! ATATTCTTTGTTGTAAATCT+CGG + chr4_3:29177942-29177961 None:intergenic 20.0%
!! TTAAAGAATGTATATGCTAT+TGG - chr4_3:29178082-29178101 Msa0637530:CDS 20.0%
!! TATAAACAACAATTGAATGT+AGG + chr4_3:29178291-29178310 None:intergenic 20.0%
!!! TTGTTTTGCCATATATTATT+TGG - chr4_3:29178366-29178385 Msa0637530:intron 20.0%
!!! TGTTTTGCCATATATTATTT+GGG - chr4_3:29178367-29178386 Msa0637530:intron 20.0%
!!! AAATAATTACTCCTTTTGAA+TGG + chr4_3:29179120-29179139 None:intergenic 20.0%
!! TTATATAACATCTTCAAGAT+GGG + chr4_3:29179860-29179879 None:intergenic 20.0%
!! TTTATATAACATCTTCAAGA+TGG + chr4_3:29179861-29179880 None:intergenic 20.0%
!!! TATGTAACTAACTTTTTCTA+TGG - chr4_3:29180355-29180374 Msa0637530:CDS 20.0%
!!! ATATATCTTGAACTTTTGAT+TGG + chr4_3:29180687-29180706 None:intergenic 20.0%
! AAAAACAGAAGAAACAGTAT+GGG + chr4_3:29176683-29176702 None:intergenic 25.0%
! AAAAAACAGAAGAAACAGTA+TGG + chr4_3:29176684-29176703 None:intergenic 25.0%
! AAACAATAAATTTCATTGCG+CGG + chr4_3:29177728-29177747 None:intergenic 25.0%
! AGAAACTAAAATCAAGTCAA+GGG + chr4_3:29177834-29177853 None:intergenic 25.0%
!! GATAGAGAATATTTTCAATG+GGG + chr4_3:29177898-29177917 None:intergenic 25.0%
! GCAATTATATCAAATAAGAC+AGG + chr4_3:29178243-29178262 None:intergenic 25.0%
! CAGTTGAAATTTCATTTAAG+AGG - chr4_3:29178262-29178281 Msa0637530:CDS 25.0%
!! TCAATCATCTTTTCTACAAT+AGG + chr4_3:29178613-29178632 None:intergenic 25.0%
! GGAATATCAAGAAGAATTAT+AGG - chr4_3:29178815-29178834 Msa0637530:intron 25.0%
! AACTATCAAGAAAGACTTAA+AGG - chr4_3:29178841-29178860 Msa0637530:intron 25.0%
!! ATCAATACCATTTGTTAGAA+AGG - chr4_3:29178981-29179000 Msa0637530:intron 25.0%
!! AAGTTTTTCTACCATTCAAA+AGG - chr4_3:29179106-29179125 Msa0637530:intron 25.0%
!! TTTATGATGATCGATTTAAC+AGG - chr4_3:29179392-29179411 Msa0637530:intron 25.0%
!! TTATGATGATCGATTTAACA+GGG - chr4_3:29179393-29179412 Msa0637530:intron 25.0%
!! GATTTTTATCACTCATCTAT+TGG - chr4_3:29179487-29179506 Msa0637530:intron 25.0%
!! ATTTCATTCAAGTTTCTACT+TGG - chr4_3:29179692-29179711 Msa0637530:CDS 25.0%
! AAAATTCATAAAAGGATTGC+TGG + chr4_3:29180004-29180023 None:intergenic 25.0%
! GTTGGAACAAAATTCATAAA+AGG + chr4_3:29180012-29180031 None:intergenic 25.0%
!!! TAAAAGGTGCATTTTAACTA+CGG + chr4_3:29180103-29180122 None:intergenic 25.0%
! CAAATCTGTCTTTAGTTAAA+AGG + chr4_3:29180119-29180138 None:intergenic 25.0%
! GAAAAAGTTAGTTACATAAC+TGG + chr4_3:29180353-29180372 None:intergenic 25.0%
!!! TTTTCTATGGTTTTGATTTG+TGG - chr4_3:29180368-29180387 Msa0637530:CDS 25.0%
!! CTTAAATGACCATAAACTTT+TGG + chr4_3:29180625-29180644 None:intergenic 25.0%
!!! TAGTTTTCTGTTATCGATTT+CGG - chr4_3:29180956-29180975 Msa0637530:five_prime_UTR 25.0%
AACATGCATTGAAGAGAAAA+AGG + chr4_3:29176827-29176846 None:intergenic 30.0%
!!! TTCATGTTTTTGGAAGATTG+TGG - chr4_3:29176915-29176934 Msa0637530:three_prime_UTR 30.0%
!! TTTTGGAAGATTGTGGTTTT+TGG - chr4_3:29176922-29176941 Msa0637530:three_prime_UTR 30.0%
! TTTGGAAGATTGTGGTTTTT+GGG - chr4_3:29176923-29176942 Msa0637530:three_prime_UTR 30.0%
!! TGAAAGCAAGCTTAATTTGT+TGG - chr4_3:29176971-29176990 Msa0637530:three_prime_UTR 30.0%
!!! TTATGGTAGTTTTAGAGACA+AGG - chr4_3:29177193-29177212 Msa0637530:CDS 30.0%
!!! TTAGAGACAAGGTTTTGATT+AGG - chr4_3:29177204-29177223 Msa0637530:CDS 30.0%
!!! ACAAGGTTTTGATTAGGATA+TGG - chr4_3:29177210-29177229 Msa0637530:CDS 30.0%
! TGTTTGAAGTGATTAATTCG+AGG - chr4_3:29177276-29177295 Msa0637530:CDS 30.0%
! GTTTGAAGTGATTAATTCGA+GGG - chr4_3:29177277-29177296 Msa0637530:CDS 30.0%
!! CAGATGAGATTTTGAAAGAT+GGG - chr4_3:29177381-29177400 Msa0637530:intron 30.0%
!!! AGATGGGTTTTGTTTGAATA+TGG - chr4_3:29177397-29177416 Msa0637530:intron 30.0%
TAATTTCTTCAAACACCTCA+CGG + chr4_3:29177520-29177539 None:intergenic 30.0%
AGTTCCTGTCATTATTTCAT+TGG - chr4_3:29177565-29177584 Msa0637530:intron 30.0%
TTAGCCAATGAAATAATGAC+AGG + chr4_3:29177572-29177591 None:intergenic 30.0%
! TGTCATTATTTCATTGGCTA+AGG - chr4_3:29177571-29177590 Msa0637530:intron 30.0%
! GTCATTATTTCATTGGCTAA+GGG - chr4_3:29177572-29177591 Msa0637530:intron 30.0%
TCATTACTTGCTTTATGATG+TGG - chr4_3:29177683-29177702 Msa0637530:intron 30.0%
CAGAAACTAAAATCAAGTCA+AGG + chr4_3:29177835-29177854 None:intergenic 30.0%
GAAAATATTCTCTATCTTGG+AGG - chr4_3:29177902-29177921 Msa0637530:CDS 30.0%
! AACCATTGGCAAAGTTTTTA+AGG - chr4_3:29177999-29178018 Msa0637530:intron 30.0%
TCTTGTTACTCATGAAGTTA+TGG - chr4_3:29178054-29178073 Msa0637530:CDS 30.0%
CTTGTTACTCATGAAGTTAT+GGG - chr4_3:29178055-29178074 Msa0637530:CDS 30.0%
TTTGCCATATATTATTTGGG+AGG - chr4_3:29178370-29178389 Msa0637530:intron 30.0%
!!! TTTTGGGTTGTTAGAGATTA+TGG - chr4_3:29178481-29178500 Msa0637530:intron 30.0%
!! TTTGGGTTGTTAGAGATTAT+GGG - chr4_3:29178482-29178501 Msa0637530:intron 30.0%
TCAGTGAATCCTTATATGTA+TGG - chr4_3:29178531-29178550 Msa0637530:intron 30.0%
! CTAGTTCTTCCATACATATA+AGG + chr4_3:29178543-29178562 None:intergenic 30.0%
AATCTCGACTTAGATGATTT+GGG - chr4_3:29178632-29178651 Msa0637530:intron 30.0%
!! TTAGATGATTTGGGTTTTTG+TGG - chr4_3:29178641-29178660 Msa0637530:intron 30.0%
! TTAGTATTTTTCTTCCATGC+CGG - chr4_3:29178690-29178709 Msa0637530:intron 30.0%
TGATATTCCTTTACCTCTAA+TGG + chr4_3:29178804-29178823 None:intergenic 30.0%
TCTAGTTAGAATTGTTCAGA+TGG - chr4_3:29179026-29179045 Msa0637530:intron 30.0%
TGAATGGTAGAAAAACTTGT+TGG + chr4_3:29179104-29179123 None:intergenic 30.0%
AAGCTAGGAAAATAAACACA+AGG + chr4_3:29179146-29179165 None:intergenic 30.0%
! ATTTTCCTAGCTTCAATGAT+TGG - chr4_3:29179153-29179172 Msa0637530:intron 30.0%
CACACATAAATAACATCAAG+AGG + chr4_3:29179291-29179310 None:intergenic 30.0%
CATTTAACTGCACTATAAGA+GGG + chr4_3:29179342-29179361 None:intergenic 30.0%
ACATTTAACTGCACTATAAG+AGG + chr4_3:29179343-29179362 None:intergenic 30.0%
ACTTATGTAACCTTGTTGAA+AGG - chr4_3:29179551-29179570 Msa0637530:intron 30.0%
TCTGTGATATCGTATTCTTT+AGG - chr4_3:29180054-29180073 Msa0637530:CDS 30.0%
TAACTAAAGACAGATTTGTG+TGG - chr4_3:29180121-29180140 Msa0637530:CDS 30.0%
AACTAAAGACAGATTTGTGT+GGG - chr4_3:29180122-29180141 Msa0637530:CDS 30.0%
!! TTTTAGTTGGTTGTGTCTAT+TGG - chr4_3:29180767-29180786 Msa0637530:five_prime_UTR 30.0%
AAATACCAAGACAACTTTGT+TGG + chr4_3:29180817-29180836 None:intergenic 30.0%
AATGTTGAACTCTGTTATTC+AGG - chr4_3:29180838-29180857 Msa0637530:five_prime_UTR 30.0%
AAGCGTGTCAAAAACAACTT+TGG + chr4_3:29176736-29176755 None:intergenic 35.0%
! TCTAAAACAACAATGGAGAG+AGG + chr4_3:29176789-29176808 None:intergenic 35.0%
AACCATCATGGATACTCAAA+TGG - chr4_3:29177023-29177042 Msa0637530:three_prime_UTR 35.0%
AACCATTTGAGTATCCATGA+TGG + chr4_3:29177028-29177047 None:intergenic 35.0%
GGTTCTCTTCAAAGTGTAAA+TGG - chr4_3:29177044-29177063 Msa0637530:three_prime_UTR 35.0%
ATCATCAACTTTCCCCATTA+GGG + chr4_3:29177102-29177121 None:intergenic 35.0%
CCAACACAAACTATTCTCAA+TGG + chr4_3:29177128-29177147 None:intergenic 35.0%
! CCATTGAGAATAGTTTGTGT+TGG - chr4_3:29177125-29177144 Msa0637530:three_prime_UTR 35.0%
! TTGAGAATAGTTTGTGTTGG+AGG - chr4_3:29177128-29177147 Msa0637530:three_prime_UTR 35.0%
GTTTACAGCTATGTTACAAG+AGG - chr4_3:29177169-29177188 Msa0637530:exon 35.0%
! TGCGTATTTGAAATATGTCG+AGG - chr4_3:29177331-29177350 Msa0637530:intron 35.0%
! GCGTATTTGAAATATGTCGA+GGG - chr4_3:29177332-29177351 Msa0637530:intron 35.0%
! CGTATTTGAAATATGTCGAG+GGG - chr4_3:29177333-29177352 Msa0637530:intron 35.0%
!! GCAGATGAGATTTTGAAAGA+TGG - chr4_3:29177380-29177399 Msa0637530:intron 35.0%
AATTCGTCACAACCTTCAAA+GGG + chr4_3:29177439-29177458 None:intergenic 35.0%
AAATTCGTCACAACCTTCAA+AGG + chr4_3:29177440-29177459 None:intergenic 35.0%
GATGCTGACATTGTGATTAA+CGG - chr4_3:29177476-29177495 Msa0637530:intron 35.0%
AATTTCTTCAAACACCTCAC+GGG + chr4_3:29177519-29177538 None:intergenic 35.0%
TTGATATTATGCTTTGCAGC+TGG - chr4_3:29177869-29177888 Msa0637530:CDS 35.0%
! TTCTTTGTTGTAAATCTCGG+AGG + chr4_3:29177939-29177958 None:intergenic 35.0%
TATGCAAATGCTCGAATATG+TGG - chr4_3:29177959-29177978 Msa0637530:intron 35.0%
GAATATGTGGAGCAGAAAAA+TGG - chr4_3:29177972-29177991 Msa0637530:intron 35.0%
AGAAAAATGGAGGAAACCAT+TGG - chr4_3:29177985-29178004 Msa0637530:intron 35.0%
TGCCTTAAAAACTTTGCCAA+TGG + chr4_3:29178004-29178023 None:intergenic 35.0%
!!! ATTGGCAAAGTTTTTAAGGC+AGG - chr4_3:29178003-29178022 Msa0637530:intron 35.0%
AATGTATATGCTATTGGAGC+AGG - chr4_3:29178088-29178107 Msa0637530:CDS 35.0%
TAGGCCTCCCAAATAATATA+TGG + chr4_3:29178377-29178396 None:intergenic 35.0%
ACATGCCTAGCTTAAAAGAA+CGG - chr4_3:29178432-29178451 Msa0637530:intron 35.0%
GTTGTTAGAGATTATGGGTT+GGG - chr4_3:29178487-29178506 Msa0637530:intron 35.0%
! TTGTTAGAGATTATGGGTTG+GGG - chr4_3:29178488-29178507 Msa0637530:intron 35.0%
GAATCTCGACTTAGATGATT+TGG - chr4_3:29178631-29178650 Msa0637530:intron 35.0%
! TAGTATTTTTCTTCCATGCC+GGG - chr4_3:29178691-29178710 Msa0637530:intron 35.0%
AAAGTTCACGATTAGAATCC+CGG + chr4_3:29178712-29178731 None:intergenic 35.0%
AACTCAACCATTAGAGGTAA+AGG - chr4_3:29178794-29178813 Msa0637530:intron 35.0%
AGACTTAAAGGTCAGTGATT+TGG - chr4_3:29178853-29178872 Msa0637530:intron 35.0%
! AAAATCAGCCTTATCACACT+AGG + chr4_3:29178944-29178963 None:intergenic 35.0%
TTGAGCTCCTTTCTAACAAA+TGG + chr4_3:29178991-29179010 None:intergenic 35.0%
! TATTTTGCCTTCCATCTTGT+AGG - chr4_3:29179733-29179752 Msa0637530:CDS 35.0%
! ATTTTGCCTTCCATCTTGTA+GGG - chr4_3:29179734-29179753 Msa0637530:CDS 35.0%
! AGGATCTAAGACATTTAAGC+TGG + chr4_3:29179801-29179820 None:intergenic 35.0%
! CTGTTTTCTCATTCAAAGAG+AGG + chr4_3:29179938-29179957 None:intergenic 35.0%
TTCATAAAAGGATTGCTGGA+GGG + chr4_3:29180000-29180019 None:intergenic 35.0%
ATTCATAAAAGGATTGCTGG+AGG + chr4_3:29180001-29180020 None:intergenic 35.0%
AATACGATATCACAGAACAG+CGG + chr4_3:29180050-29180069 None:intergenic 35.0%
TTTAACTACGGACAAAACTG+TGG + chr4_3:29180091-29180110 None:intergenic 35.0%
ATAATATTTCCTATTGGCGC+AGG + chr4_3:29180276-29180295 None:intergenic 35.0%
! ATGACCATAAACTTTTGGTG+AGG + chr4_3:29180620-29180639 None:intergenic 35.0%
ATACTTGCCTGTGTAGTTAT+CGG - chr4_3:29180901-29180920 Msa0637530:five_prime_UTR 35.0%
AGTTATACCGATAACTACAC+AGG + chr4_3:29180911-29180930 None:intergenic 35.0%
TGTGTAGTTATCGGTATAAC+TGG - chr4_3:29180910-29180929 Msa0637530:five_prime_UTR 35.0%
CAGAAAACTAACTCACAAAC+TGG + chr4_3:29180946-29180965 None:intergenic 35.0%
ACAGAAGAAACAGTATGGGT+GGG + chr4_3:29176679-29176698 None:intergenic 40.0%
AACAGAAGAAACAGTATGGG+TGG + chr4_3:29176680-29176699 None:intergenic 40.0%
!! GCAAGCTTAATTTGTTGGTG+TGG - chr4_3:29176976-29176995 Msa0637530:three_prime_UTR 40.0%
!! ATTTGTTGGTGTGGTGTCAT+TGG - chr4_3:29176985-29177004 Msa0637530:three_prime_UTR 40.0%
GGATCAAAGATGAACCATCA+TGG - chr4_3:29177011-29177030 Msa0637530:three_prime_UTR 40.0%
TGATGAGCTTAGAACCCTAA+TGG - chr4_3:29177085-29177104 Msa0637530:intron 40.0%
GATGAGCTTAGAACCCTAAT+GGG - chr4_3:29177086-29177105 Msa0637530:intron 40.0%
ATGAGCTTAGAACCCTAATG+GGG - chr4_3:29177087-29177106 Msa0637530:intron 40.0%
CATCATCAACTTTCCCCATT+AGG + chr4_3:29177103-29177122 None:intergenic 40.0%
! AGAATAGTTTGTGTTGGAGG+TGG - chr4_3:29177131-29177150 Msa0637530:three_prime_UTR 40.0%
GCTATGTTACAAGAGGCTTA+TGG - chr4_3:29177176-29177195 Msa0637530:CDS 40.0%
ATTAGGATATGGAGAAGACC+AGG - chr4_3:29177221-29177240 Msa0637530:CDS 40.0%
TGAAGTGATTAATTCGAGGG+AGG - chr4_3:29177280-29177299 Msa0637530:CDS 40.0%
! ATGTGTTGAGGAGGTTGATT+AGG - chr4_3:29177303-29177322 Msa0637530:intron 40.0%
AAATATGTCGAGGGGAGATT+AGG - chr4_3:29177341-29177360 Msa0637530:intron 40.0%
GAATTTGCAGGAAGCTGTAT+GGG - chr4_3:29177454-29177473 Msa0637530:intron 40.0%
! TATTTCATTGGCTAAGGGTG+TGG - chr4_3:29177577-29177596 Msa0637530:intron 40.0%
ACATGCATTCAAATGCTCGA+GGG + chr4_3:29177766-29177785 None:intergenic 40.0%
AACATGCATTCAAATGCTCG+AGG + chr4_3:29177767-29177786 None:intergenic 40.0%
TAAATCTCGGAGGCAATGTT+AGG + chr4_3:29177929-29177948 None:intergenic 40.0%
TATGTGGAGCAGAAAAATGG+AGG - chr4_3:29177975-29177994 Msa0637530:intron 40.0%
GTTACTCATGAAGTTATGGG+TGG - chr4_3:29178058-29178077 Msa0637530:CDS 40.0%
! CTTCACCCCTCTAATCTTTT+AGG + chr4_3:29178396-29178415 None:intergenic 40.0%
!! AAGTGCCGTTCTTTTAAGCT+AGG + chr4_3:29178440-29178459 None:intergenic 40.0%
GGTTGTTAGAGATTATGGGT+TGG - chr4_3:29178486-29178505 Msa0637530:intron 40.0%
ATGGAAGAACTAGACGAGAT+AGG - chr4_3:29178550-29178569 Msa0637530:intron 40.0%
TGGAAGAACTAGACGAGATA+GGG - chr4_3:29178551-29178570 Msa0637530:intron 40.0%
CTCTCTAACGCAATCATTTC+TGG + chr4_3:29178577-29178596 None:intergenic 40.0%
ATGATTGCGTTAGAGAGAGT+TGG - chr4_3:29178580-29178599 Msa0637530:intron 40.0%
!! GATGATTTGGGTTTTTGTGG+AGG - chr4_3:29178644-29178663 Msa0637530:intron 40.0%
TTGAGCTAAGGGATTAAAGG+AGG + chr4_3:29178744-29178763 None:intergenic 40.0%
TGGTTGAGCTAAGGGATTAA+AGG + chr4_3:29178747-29178766 None:intergenic 40.0%
! AAGGTCAGTGATTTGGATAG+TGG - chr4_3:29178860-29178879 Msa0637530:intron 40.0%
ACGAACCAATCATTGAAGCT+AGG + chr4_3:29179161-29179180 None:intergenic 40.0%
! GATGATCGATTTAACAGGGA+TGG - chr4_3:29179397-29179416 Msa0637530:intron 40.0%
!! AAAGTAGACTGATTTGCTGG+TGG + chr4_3:29179447-29179466 None:intergenic 40.0%
AATCATCTCTGATGTGCAGT+GGG + chr4_3:29179471-29179490 None:intergenic 40.0%
AAATCATCTCTGATGTGCAG+TGG + chr4_3:29179472-29179491 None:intergenic 40.0%
CATAAGTATCAGCCAAGAGA+GGG + chr4_3:29179538-29179557 None:intergenic 40.0%
ACATAAGTATCAGCCAAGAG+AGG + chr4_3:29179539-29179558 None:intergenic 40.0%
TGCATTACGACCTTTCAACA+AGG + chr4_3:29179564-29179583 None:intergenic 40.0%
TGTTGAAAGGTCGTAATGCA+TGG - chr4_3:29179564-29179583 Msa0637530:intron 40.0%
AAAGGTCGTAATGCATGGTA+TGG - chr4_3:29179569-29179588 Msa0637530:intron 40.0%
TGCATGGTATGGACAAAAGT+TGG - chr4_3:29179580-29179599 Msa0637530:intron 40.0%
TATGGACAAAAGTTGGCCAA+AGG - chr4_3:29179587-29179606 Msa0637530:intron 40.0%
TTCAAGGCTCAATTCTCCTT+TGG + chr4_3:29179606-29179625 None:intergenic 40.0%
AGGAGAATTGAGCCTTGAAA+TGG - chr4_3:29179607-29179626 Msa0637530:CDS 40.0%
GGAGAATTGAGCCTTGAAAT+GGG - chr4_3:29179608-29179627 Msa0637530:CDS 40.0%
!! GCAACATGCTTGTTTTCATC+AGG + chr4_3:29179821-29179840 None:intergenic 40.0%
!! TCGAAGGTATTAACCGCTTT+GGG + chr4_3:29180159-29180178 None:intergenic 40.0%
!! TTCGAAGGTATTAACCGCTT+TGG + chr4_3:29180160-29180179 None:intergenic 40.0%
AAAAACCGTTCAGCAGACTT+TGG - chr4_3:29180178-29180197 Msa0637530:CDS 40.0%
AAAACCGTTCAGCAGACTTT+GGG - chr4_3:29180179-29180198 Msa0637530:CDS 40.0%
TTTGTGGACCTCTTATCTTC+AGG - chr4_3:29180384-29180403 Msa0637530:CDS 40.0%
TTGTGGACCTCTTATCTTCA+GGG - chr4_3:29180385-29180404 Msa0637530:CDS 40.0%
GGCTCTGTGCAATCTTAATA+CGG + chr4_3:29180472-29180491 None:intergenic 40.0%
TTAGAATCCTCGTCTCTTGT+GGG - chr4_3:29180529-29180548 Msa0637530:CDS 40.0%
! CCATAAACTTTTGGTGAGGT+GGG + chr4_3:29180616-29180635 None:intergenic 40.0%
! ACCATAAACTTTTGGTGAGG+TGG + chr4_3:29180617-29180636 None:intergenic 40.0%
TTGGTTGTGTCTATTGGTAC+TGG - chr4_3:29180773-29180792 Msa0637530:five_prime_UTR 40.0%
CAACTTTGTTGGAGGAATTC+TGG + chr4_3:29180806-29180825 None:intergenic 40.0%
TTCCTCCAACAAAGTTGTCT+TGG - chr4_3:29180809-29180828 Msa0637530:five_prime_UTR 40.0%
TACCAAGACAACTTTGTTGG+AGG + chr4_3:29180814-29180833 None:intergenic 40.0%
!! TTGGTGTGGTGTCATTGGTT+GGG - chr4_3:29176990-29177009 Msa0637530:three_prime_UTR 45.0%
! AAGAGCTGTTGATAGAGCCA+CGG - chr4_3:29177244-29177263 Msa0637530:CDS 45.0%
TTCAAACAAATGCGTAGCCG+TGG + chr4_3:29177264-29177283 None:intergenic 45.0%
TACACCTGTTTGCCCTTTGA+AGG - chr4_3:29177424-29177443 Msa0637530:intron 45.0%
ACAACCTTCAAAGGGCAAAC+AGG + chr4_3:29177431-29177450 None:intergenic 45.0%
GAAGGTTGTGACGAATTTGC+AGG - chr4_3:29177442-29177461 Msa0637530:intron 45.0%
CGAATTTGCAGGAAGCTGTA+TGG - chr4_3:29177453-29177472 Msa0637530:intron 45.0%
TGGGAGGCCTAAAAGATTAG+AGG - chr4_3:29178386-29178405 Msa0637530:intron 45.0%
GGGAGGCCTAAAAGATTAGA+GGG - chr4_3:29178387-29178406 Msa0637530:intron 45.0%
GGAGGCCTAAAAGATTAGAG+GGG - chr4_3:29178388-29178407 Msa0637530:intron 45.0%
!! ATTATGGGTTGGGGATGAGT+AGG - chr4_3:29178497-29178516 Msa0637530:intron 45.0%
!! TTATGGGTTGGGGATGAGTA+GGG - chr4_3:29178498-29178517 Msa0637530:intron 45.0%
AGCTCACTTGGTTGAGCTAA+GGG + chr4_3:29178755-29178774 None:intergenic 45.0%
TAGCTCACTTGGTTGAGCTA+AGG + chr4_3:29178756-29178775 None:intergenic 45.0%
CTTATCACACTAGGTGGGAT+CGG + chr4_3:29178935-29178954 None:intergenic 45.0%
! TCAGCCTTATCACACTAGGT+GGG + chr4_3:29178940-29178959 None:intergenic 45.0%
! ATCAGCCTTATCACACTAGG+TGG + chr4_3:29178941-29178960 None:intergenic 45.0%
!! GGCAAAGTAGACTGATTTGC+TGG + chr4_3:29179450-29179469 None:intergenic 45.0%
GAAGAACCAGAGAAACTTGC+AGG - chr4_3:29179512-29179531 Msa0637530:intron 45.0%
TGATGCTGTCACCCATTTCA+AGG + chr4_3:29179622-29179641 None:intergenic 45.0%
TGAAATGGGTGACAGCATCA+AGG - chr4_3:29179622-29179641 Msa0637530:CDS 45.0%
GAAATGGGTGACAGCATCAA+GGG - chr4_3:29179623-29179642 Msa0637530:CDS 45.0%
! CAGATGAACCTGAGCTTTAG+CGG - chr4_3:29179955-29179974 Msa0637530:intron 45.0%
!! TCTGCTGAACGGTTTTTCGA+AGG + chr4_3:29180175-29180194 None:intergenic 45.0%
TGATCCCAAAGTCTGCTGAA+CGG + chr4_3:29180186-29180205 None:intergenic 45.0%
CAGGAGCTCAAAAGTTAGGT+AGG + chr4_3:29180257-29180276 None:intergenic 45.0%
GGAGATTCCCTGAAGATAAG+AGG + chr4_3:29180395-29180414 None:intergenic 45.0%
GCTTGAAGTATAGCCTGTAC+TGG + chr4_3:29180416-29180435 None:intergenic 45.0%
GCAATCTTAATACGGTCTCG+AGG + chr4_3:29180464-29180483 None:intergenic 45.0%
! CACAGAGCCATGTGTTTTAC+CGG - chr4_3:29180483-29180502 Msa0637530:CDS 45.0%
! TTTTACCGGCCATCTCTTCT+TGG - chr4_3:29180497-29180516 Msa0637530:CDS 45.0%
CACAAGAGACGAGGATTCTA+AGG + chr4_3:29180530-29180549 None:intergenic 45.0%
CTTAGAATCCTCGTCTCTTG+TGG - chr4_3:29180528-29180547 Msa0637530:CDS 45.0%
CCCACCTCACCAAAAGTTTA+TGG - chr4_3:29180613-29180632 Msa0637530:CDS 45.0%
ATTCAGGCAAACTTCAGCGA+AGG - chr4_3:29180854-29180873 Msa0637530:five_prime_UTR 45.0%
!! TATATAAAATACTAATATTA+AGG - chr4_3:29179873-29179892 Msa0637530:intron 5.0%
!! GTTGGTGTGGTGTCATTGGT+TGG - chr4_3:29176989-29177008 Msa0637530:three_prime_UTR 50.0%
TTTGTGTTGGAGGTGGTGCT+TGG - chr4_3:29177138-29177157 Msa0637530:three_prime_UTR 50.0%
TTGTGTTGGAGGTGGTGCTT+GGG - chr4_3:29177139-29177158 Msa0637530:three_prime_UTR 50.0%
GCTCTATCAACAGCTCTTCC+TGG + chr4_3:29177242-29177261 None:intergenic 50.0%
ATTCGAGGGAGGATGTGTTG+AGG - chr4_3:29177291-29177310 Msa0637530:intron 50.0%
TCGAGGGGAGATTAGGTGAT+AGG - chr4_3:29177348-29177367 Msa0637530:intron 50.0%
CGAGGGGAGATTAGGTGATA+GGG - chr4_3:29177349-29177368 Msa0637530:intron 50.0%
! TTCATTGGCTAAGGGTGTGG+AGG - chr4_3:29177580-29177599 Msa0637530:intron 50.0%
! TAAGGGTGTGGAGGCTGAAT+TGG - chr4_3:29177589-29177608 Msa0637530:intron 50.0%
! AGCGTAGGTGTTATGATCCG+CGG + chr4_3:29177623-29177642 None:intergenic 50.0%
GCTCGACTGATCATTAGCGT+AGG + chr4_3:29177638-29177657 None:intergenic 50.0%
GCAGGCGCACTTTATAGTGT+GGG - chr4_3:29178021-29178040 Msa0637530:intron 50.0%
TCACGATTAGAATCCCGGCA+TGG + chr4_3:29178707-29178726 None:intergenic 50.0%
TAATGGTTGAGTTACCCCCC+CGG + chr4_3:29178787-29178806 None:intergenic 50.0%
GGGGGTAACTCAACCATTAG+AGG - chr4_3:29178788-29178807 Msa0637530:intron 50.0%
CGATCCCACCTAGTGTGATA+AGG - chr4_3:29178933-29178952 Msa0637530:intron 50.0%
GAGACTCCCTACAAGATGGA+AGG + chr4_3:29179743-29179762 None:intergenic 50.0%
AGCAGAGACTCCCTACAAGA+TGG + chr4_3:29179747-29179766 None:intergenic 50.0%
AGATGGGACAAAGCTCGACA+GGG + chr4_3:29179844-29179863 None:intergenic 50.0%
AAGATGGGACAAAGCTCGAC+AGG + chr4_3:29179845-29179864 None:intergenic 50.0%
GAACAGCGGTTCAACAGACT+CGG + chr4_3:29180036-29180055 None:intergenic 50.0%
GGCTTACACAAGACCCAAAG+CGG - chr4_3:29180143-29180162 Msa0637530:CDS 50.0%
! TTTTGAGCTCCTGCGCCAAT+AGG - chr4_3:29180264-29180283 Msa0637530:CDS 50.0%
CTTCAGGGAATCTCCAGTAC+AGG - chr4_3:29180400-29180419 Msa0637530:CDS 50.0%
GAGATGGCCGGTAAAACACA+TGG + chr4_3:29180493-29180512 None:intergenic 50.0%
TGCAAAACCCACAAGAGACG+AGG + chr4_3:29180539-29180558 None:intergenic 50.0%
TGTGTTGGAGGTGGTGCTTG+GGG - chr4_3:29177140-29177159 Msa0637530:three_prime_UTR 55.0%
ACCTCACGGGTTTCTGTCGA+TGG + chr4_3:29177506-29177525 None:intergenic 55.0%
! CTGAATTGGTTCCTGAGCCG+CGG - chr4_3:29177603-29177622 Msa0637530:intron 55.0%
GGCAGGCGCACTTTATAGTG+TGG - chr4_3:29178020-29178039 Msa0637530:intron 55.0%
CAAGTGAGCTACTCATCCCC+CGG - chr4_3:29178765-29178784 Msa0637530:intron 55.0%
AAGTGAGCTACTCATCCCCC+GGG - chr4_3:29178766-29178785 Msa0637530:intron 55.0%
AATGGTTGAGTTACCCCCCC+GGG + chr4_3:29178786-29178805 None:intergenic 55.0%
ACTAGGTGGGATCGGCTACA+TGG + chr4_3:29178927-29178946 None:intergenic 55.0%
AGAGGGCCTGCAAGTTTCTC+TGG + chr4_3:29179521-29179540 None:intergenic 55.0%
GAAACTTGCAGGCCCTCTCT+TGG - chr4_3:29179523-29179542 Msa0637530:intron 55.0%
GGTGACAGCATCAAGGGCAA+GGG - chr4_3:29179629-29179648 Msa0637530:CDS 55.0%
GTGACAGCATCAAGGGCAAG+GGG - chr4_3:29179630-29179649 Msa0637530:CDS 55.0%
CAAGGGCAAGGGGATGATTC+AGG - chr4_3:29179640-29179659 Msa0637530:CDS 55.0%
GATGGGACAAAGCTCGACAG+GGG + chr4_3:29179843-29179862 None:intergenic 55.0%
CACTTGAGCCGCTAAAGCTC+AGG + chr4_3:29179966-29179985 None:intergenic 55.0%
CGGTTCAACAGACTCGGAGT+TGG + chr4_3:29180030-29180049 None:intergenic 55.0%
GGCGCAGGAGCTCAAAAGTT+AGG + chr4_3:29180261-29180280 None:intergenic 55.0%
ACGGTCTCGAGGATCGTTCA+TGG + chr4_3:29180453-29180472 None:intergenic 55.0%
GCTGACCAAGAAGAGATGGC+CGG + chr4_3:29180505-29180524 None:intergenic 55.0%
GGCTGCTGACCAAGAAGAGA+TGG + chr4_3:29180509-29180528 None:intergenic 55.0%
CGAGGGAGGATGTGTTGAGG+AGG - chr4_3:29177294-29177313 Msa0637530:intron 60.0%
GCCATCGACAGAAACCCGTG+AGG - chr4_3:29177502-29177521 Msa0637530:intron 60.0%
! GGTGTTATGATCCGCGGCTC+AGG + chr4_3:29177617-29177636 None:intergenic 60.0%
CGGGGGATGAGTAGCTCACT+TGG + chr4_3:29178767-29178786 None:intergenic 60.0%
AGTGAGCTACTCATCCCCCG+GGG - chr4_3:29178767-29178786 Msa0637530:intron 60.0%
ATGGTTGAGTTACCCCCCCG+GGG + chr4_3:29178785-29178804 None:intergenic 60.0%
GGGTGACAGCATCAAGGGCA+AGG - chr4_3:29179628-29179647 Msa0637530:CDS 60.0%
GTGAGCTACTCATCCCCCGG+GGG - chr4_3:29178768-29178787 Msa0637530:intron 65.0%
TGAGCTACTCATCCCCCGGG+GGG - chr4_3:29178769-29178788 Msa0637530:intron 65.0%
TGGTTGAGTTACCCCCCCGG+GGG + chr4_3:29178784-29178803 None:intergenic 65.0%
GAGCTACTCATCCCCCGGGG+GGG - chr4_3:29178770-29178789 Msa0637530:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 29176666 29181039 29176666 ID=Msa0637530;Name=Msa0637530
chr4_3 mRNA 29176666 29181039 29176666 ID=Msa0637530-mRNA-1;Parent=Msa0637530;Name=Msa0637530-mRNA-1;_AED=0.05;_eAED=0.05;_QI=354|1|1|1|0.8|0.66|6|474|458
chr4_3 exon 29176666 29177069 29176666 ID=Msa0637530-mRNA-1:exon:7175;Parent=Msa0637530-mRNA-1
chr4_3 exon 29177103 29177299 29177103 ID=Msa0637530-mRNA-1:exon:7174;Parent=Msa0637530-mRNA-1
chr4_3 exon 29177811 29177950 29177811 ID=Msa0637530-mRNA-1:exon:7173;Parent=Msa0637530-mRNA-1
chr4_3 exon 29178044 29178291 29178044 ID=Msa0637530-mRNA-1:exon:7172;Parent=Msa0637530-mRNA-1
chr4_3 exon 29179596 29179817 29179596 ID=Msa0637530-mRNA-1:exon:7171;Parent=Msa0637530-mRNA-1
chr4_3 exon 29180046 29181039 29180046 ID=Msa0637530-mRNA-1:exon:7170;Parent=Msa0637530-mRNA-1
chr4_3 five_prime_UTR 29180686 29181039 29180686 ID=Msa0637530-mRNA-1:five_prime_utr;Parent=Msa0637530-mRNA-1
chr4_3 CDS 29180046 29180685 29180046 ID=Msa0637530-mRNA-1:cds;Parent=Msa0637530-mRNA-1
chr4_3 CDS 29179596 29179817 29179596 ID=Msa0637530-mRNA-1:cds;Parent=Msa0637530-mRNA-1
chr4_3 CDS 29178044 29178291 29178044 ID=Msa0637530-mRNA-1:cds;Parent=Msa0637530-mRNA-1
chr4_3 CDS 29177811 29177950 29177811 ID=Msa0637530-mRNA-1:cds;Parent=Msa0637530-mRNA-1
chr4_3 CDS 29177173 29177299 29177173 ID=Msa0637530-mRNA-1:cds;Parent=Msa0637530-mRNA-1
chr4_3 three_prime_UTR 29177103 29177172 29177103 ID=Msa0637530-mRNA-1:three_prime_utr;Parent=Msa0637530-mRNA-1
chr4_3 three_prime_UTR 29176666 29177069 29176666 ID=Msa0637530-mRNA-1:three_prime_utr;Parent=Msa0637530-mRNA-1
Gene Sequence

>Msa0637530

ATGAACCATCATGGATACTCAAATGGTTCTCTTCAAAGTGTAAATGGTAATTTTGAAGAGAAGCTTGATGAGCTTAGAACCCTAATGGGGAAAGTTGATGATGATCCATTGAGAATAGTTTGTGTTGGAGGTGGTGCTTGGGGTAGTGTGTTTACAGCTATGTTACAAGAGGCTTATGGTAGTTTTAGAGACAAGGTTTTGATTAGGATATGGAGAAGACCAGGAAGAGCTGTTGATAGAGCCACGGCTACGCATTTGTTTGAAGTGATTAATTCGAGGGAGGATGTGTTGAGGAGGTTGATTAGGCGTTGTGCGTATTTGAAATATGTCGAGGGGAGATTAGGTGATAGGGTTCTTCATGCAGATGAGATTTTGAAAGATGGGTTTTGTTTGAATATGGTTGATACACCTGTTTGCCCTTTGAAGGTTGTGACGAATTTGCAGGAAGCTGTATGGGATGCTGACATTGTGATTAACGGTTTGCCATCGACAGAAACCCGTGAGGTGTTTGAAGAAATTAGTAAGTATTGGAAAGAGAGAATCACAGTTCCTGTCATTATTTCATTGGCTAAGGGTGTGGAGGCTGAATTGGTTCCTGAGCCGCGGATCATAACACCTACGCTAATGATCAGTCGAGCAACTGGAGTCCCCATTGAAAATATTCTCTATCTTGGAGGTCCTAACATTGCCTCCGAGATTTACAACAAAGAATATGCAAATGCTCGAATATGTGGAGCAGAAAAATGGAGGAAACCATTGGCAAAGTTTTTAAGGCAGGCGCACTTTATAGTGTGGGATAATGTTGATCTTGTTACTCATGAAGTTATGGGTGGATTAAAGAATGTATATGCTATTGGAGCAGGGATGGTAGCTGCTTTGACGAATGAAAGTGCCACCAGCAAATCAGTCTACTTTGCCCACTGCACATCAGAGATGATTTTTATCACTCATCTATTGGCAGAAGAACCAGAGAAACTTGCAGGCCCTCTCTTGGCTGATACTTATGTAACCTTGTTGAAAGGTCGTAATGCATGGTATGGACAAAAGTTGGCCAAAGGAGAATTGAGCCTTGAAATGGGTGACAGCATCAAGGGCAAGGGGATGATTCAGGGAGTCTCTGCTGTTAAAGCATTCTATGAGCTACTGAGTCTGTCCAGCTTAAATGTCTTAGATCCTGATGAAAACAAGCATGTTGCCCCTGTCGAGCTTTGTCCCATCTTGAAGATGTTATATAAAATACTAATATTAAGGGAATCTCCAGTACAGGCTATACTTCAAGCATTACGAGATGAGACCATGAACGATCCTCGAGACCGTATTAAGATTGCACAGAGCCATGTGTTTTACCGGCCATCTCTTCTTGGTCAGCAGCCTTAG
Protein sequence

>Msa0637530

MNHHGYSNGSLQSVNGNFEEKLDELRTLMGKVDDDPLRIVCVGGGAWGSVFTAMLQEAYGSFRDKVLIRIWRRPGRAVDRATATHLFEVINSREDVLRRLIRRCAYLKYVEGRLGDRVLHADEILKDGFCLNMVDTPVCPLKVVTNLQEAVWDADIVINGLPSTETREVFEEISKYWKERITVPVIISLAKGVEAELVPEPRIITPTLMISRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRQAHFIVWDNVDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMIFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQKLAKGELSLEMGDSIKGKGMIQGVSAVKAFYELLSLSSLNVLDPDENKHVAPVELCPILKMLYKILILRESPVQAILQALRDETMNDPRDRIKIAQSHVFYRPSLLGQQP*