AlfalfaGEDB | Msa0644380

M. sativa cultivar zhongmu-4 / Msa0644380

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0010119 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:1902456 GO:1902458
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0644380	XP_039689166.1	54.802	177	49	5	7	166	1	163	5.24e-35	150
Msa0644380	XP_039689166.1	75.481	208	51	0	121	328	208	415	2.39e-96	316
Msa0644380	XP_039689166.1	86.860	449	28	1	328	776	1	418	0.0	752

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0644380	sp\|P46573\|PBL10_ARATH	56.404	445	134	8	336	771	1	394	4.37e-157	465
Msa0644380	sp\|P46573\|PBL10_ARATH	65.482	197	57	3	121	308	182	376	2.58e-75	253
Msa0644380	sp\|P46573\|PBL10_ARATH	48.673	113	53	1	15	127	1	108	1.33e-20	98.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0644380	A0A072UM42	54.802	177	49	5	7	166	1	163	2.50e-35	150
Msa0644380	A0A072UM42	75.481	208	51	0	121	328	208	415	1.14e-96	316
Msa0644380	A0A072UM42	86.860	449	28	1	328	776	1	418	0.0	752

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0603350	Msa0644380	0.915877	3.488873e-85	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0644380	MtrunA17_Chr4g0031571	86.860	449	28	1	328	776	1	418	0.0	752
Msa0644380	MtrunA17_Chr4g0031571	75.481	208	51	0	121	328	208	415	2.20e-100	316
Msa0644380	MtrunA17_Chr4g0031571	54.802	177	49	5	7	166	1	163	4.82e-39	150
Msa0644380	MtrunA17_Chr4g0031591	72.727	451	85	4	328	776	1	415	0.0	636
Msa0644380	MtrunA17_Chr4g0031591	78.537	205	44	0	121	325	205	409	1.50e-107	335
Msa0644380	MtrunA17_Chr4g0031591	58.940	151	32	4	7	143	1	135	2.36e-37	145
Msa0644380	MtrunA17_Chr4g0031561	73.274	449	87	2	328	776	1	416	0.0	636
Msa0644380	MtrunA17_Chr4g0031561	87.745	204	25	0	121	324	206	409	3.79e-121	370
Msa0644380	MtrunA17_Chr4g0031561	69.403	134	26	2	7	127	1	132	7.70e-43	160
Msa0644380	MtrunA17_Chr4g0031541	71.239	452	81	4	328	776	1	406	0.0	627

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0644380	AT2G28930.3	56.404	445	137	7	336	771	1	397	3.49e-159	468
Msa0644380	AT2G28930.3	65.482	197	57	3	121	308	185	379	3.59e-76	253
Msa0644380	AT2G28930.3	48.673	113	56	1	15	127	1	111	4.20e-21	97.1
Msa0644380	AT2G28930.2	56.404	445	134	8	336	771	1	394	4.45e-158	465
Msa0644380	AT2G28930.2	65.482	197	57	3	121	308	182	376	2.62e-76	253
Msa0644380	AT2G28930.2	48.673	113	53	1	15	127	1	108	1.35e-21	98.6
Msa0644380	AT2G28930.1	61.082	388	110	6	393	771	50	405	4.61e-156	461
Msa0644380	AT2G28930.1	65.482	197	57	3	121	308	193	387	5.09e-76	253
Msa0644380	AT2G28930.1	66.667	66	22	0	62	127	54	119	6.19e-19	90.5
Msa0644380	AT1G07570.1	56.757	444	132	9	336	771	1	392	1.32e-154	456

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Find 284 sgRNAs with CRISPR-Local

Find 655 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGATGTATATAGTTT+TGG	0.321882	4_3:+48228172	Msa0644380:CDS
AAAAGTGATGTCTATAGTTT+CGG	0.370723	4_3:+48224375	Msa0644380:CDS
AAAAGTTGTCGTAATCTCAG+GGG	0.717883	4_3:+48219372	Msa0644380:five_prime_UTR
AAACAGGAATTTCATGAGGC+TGG	0.474488	4_3:+48221059	Msa0644380:intron
AAACATGGATGAGGTTGTTA+CGG	0.493585	4_3:+48228417	Msa0644380:CDS
AAACGTAGGCTCCAAGAAAG+AGG	0.577226	4_3:-48227661	None:intergenic
AAACTGAATGTCCCCACAGG+AGG	0.675516	4_3:+48228616	Msa0644380:three_prime_UTR
AAAGCTTAACAGTTATGGTA+AGG	0.444760	4_3:-48228885	None:intergenic
AAATGTAACATCCCTTTATT+TGG	0.138062	4_3:+48220616	Msa0644380:five_prime_UTR
AAATTAAAGGGGTTCCTCCA+TGG	0.569383	4_3:+48220893	Msa0644380:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTAAAAGTTGTCGTAATCTC+AGG	+	chr4_3:48219370-48219389	Msa0644380:five_prime_UTR	30.0%
TAAAAGTTGTCGTAATCTCA+GGG	+	chr4_3:48219371-48219390	Msa0644380:five_prime_UTR	30.0%
TTAAAAGTTGTCGCAATCTA+AGG	+	chr4_3:48219511-48219530	Msa0644380:intron	30.0%
TAAGACTATCACAATCTGAA+AGG	-	chr4_3:48219578-48219597	None:intergenic	30.0%
TTAAAAGTTGTCGCAATCTT+AGG	+	chr4_3:48220216-48220235	Msa0644380:intron	30.0%
CGAGACTATAACAATTTGAA+AGG	-	chr4_3:48220424-48220443	None:intergenic	30.0%
TTACATGGTTATGATATTGG+AGG	-	chr4_3:48220692-48220711	None:intergenic	30.0%
CAGATGAATATTTGTCAACT+TGG	+	chr4_3:48220849-48220868	Msa0644380:five_prime_UTR	30.0%
AGGAACTTCAGGAAATTAAA+GGG	+	chr4_3:48220881-48220900	Msa0644380:five_prime_UTR	30.0%
GTAGATAACATTCTTAACCA+TGG	-	chr4_3:48220913-48220932	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	48219295	48228963	48219295	ID=Msa0644380;Name=Msa0644380
chr4_3	mRNA	48219295	48228963	48219295	ID=Msa0644380-mRNA-1;Parent=Msa0644380;Name=Msa0644380-mRNA-1;_AED=0.34;_eAED=0.34;_QI=1194\|0.66\|0.68\|0.93\|0.8\|0.75\|16\|387\|776
chr4_3	exon	48219295	48219391	48219295	ID=Msa0644380-mRNA-1:exon:11413;Parent=Msa0644380-mRNA-1
chr4_3	exon	48219534	48219691	48219534	ID=Msa0644380-mRNA-1:exon:11414;Parent=Msa0644380-mRNA-1
chr4_3	exon	48220379	48220984	48220379	ID=Msa0644380-mRNA-1:exon:11415;Parent=Msa0644380-mRNA-1
chr4_3	exon	48221065	48221404	48221065	ID=Msa0644380-mRNA-1:exon:11416;Parent=Msa0644380-mRNA-1
chr4_3	exon	48222584	48222670	48222584	ID=Msa0644380-mRNA-1:exon:11417;Parent=Msa0644380-mRNA-1
chr4_3	exon	48222782	48223047	48222782	ID=Msa0644380-mRNA-1:exon:11418;Parent=Msa0644380-mRNA-1
chr4_3	exon	48223857	48223955	48223857	ID=Msa0644380-mRNA-1:exon:11419;Parent=Msa0644380-mRNA-1
chr4_3	exon	48224042	48224159	48224042	ID=Msa0644380-mRNA-1:exon:11420;Parent=Msa0644380-mRNA-1
chr4_3	exon	48224361	48224753	48224361	ID=Msa0644380-mRNA-1:exon:11421;Parent=Msa0644380-mRNA-1
chr4_3	exon	48226446	48226532	48226446	ID=Msa0644380-mRNA-1:exon:11422;Parent=Msa0644380-mRNA-1
chr4_3	exon	48226689	48227036	48226689	ID=Msa0644380-mRNA-1:exon:11423;Parent=Msa0644380-mRNA-1
chr4_3	exon	48227224	48227333	48227224	ID=Msa0644380-mRNA-1:exon:11424;Parent=Msa0644380-mRNA-1
chr4_3	exon	48227420	48227555	48227420	ID=Msa0644380-mRNA-1:exon:11425;Parent=Msa0644380-mRNA-1
chr4_3	exon	48227644	48227786	48227644	ID=Msa0644380-mRNA-1:exon:11426;Parent=Msa0644380-mRNA-1
chr4_3	exon	48227879	48227996	48227879	ID=Msa0644380-mRNA-1:exon:11427;Parent=Msa0644380-mRNA-1
chr4_3	exon	48228158	48228963	48228158	ID=Msa0644380-mRNA-1:exon:11428;Parent=Msa0644380-mRNA-1
chr4_3	five_prime_UTR	48219295	48219391	48219295	ID=Msa0644380-mRNA-1:five_prime_utr;Parent=Msa0644380-mRNA-1
chr4_3	five_prime_UTR	48219534	48219691	48219534	ID=Msa0644380-mRNA-1:five_prime_utr;Parent=Msa0644380-mRNA-1
chr4_3	five_prime_UTR	48220379	48220984	48220379	ID=Msa0644380-mRNA-1:five_prime_utr;Parent=Msa0644380-mRNA-1
chr4_3	five_prime_UTR	48221065	48221397	48221065	ID=Msa0644380-mRNA-1:five_prime_utr;Parent=Msa0644380-mRNA-1
chr4_3	CDS	48221398	48221404	48221398	ID=Msa0644380-mRNA-1:cds;Parent=Msa0644380-mRNA-1
chr4_3	CDS	48222584	48222670	48222584	ID=Msa0644380-mRNA-1:cds;Parent=Msa0644380-mRNA-1
chr4_3	CDS	48222782	48223047	48222782	ID=Msa0644380-mRNA-1:cds;Parent=Msa0644380-mRNA-1
chr4_3	CDS	48223857	48223955	48223857	ID=Msa0644380-mRNA-1:cds;Parent=Msa0644380-mRNA-1
chr4_3	CDS	48224042	48224159	48224042	ID=Msa0644380-mRNA-1:cds;Parent=Msa0644380-mRNA-1
chr4_3	CDS	48224361	48224753	48224361	ID=Msa0644380-mRNA-1:cds;Parent=Msa0644380-mRNA-1
chr4_3	CDS	48226446	48226532	48226446	ID=Msa0644380-mRNA-1:cds;Parent=Msa0644380-mRNA-1
chr4_3	CDS	48226689	48227036	48226689	ID=Msa0644380-mRNA-1:cds;Parent=Msa0644380-mRNA-1
chr4_3	CDS	48227224	48227333	48227224	ID=Msa0644380-mRNA-1:cds;Parent=Msa0644380-mRNA-1
chr4_3	CDS	48227420	48227555	48227420	ID=Msa0644380-mRNA-1:cds;Parent=Msa0644380-mRNA-1
chr4_3	CDS	48227644	48227786	48227644	ID=Msa0644380-mRNA-1:cds;Parent=Msa0644380-mRNA-1
chr4_3	CDS	48227879	48227996	48227879	ID=Msa0644380-mRNA-1:cds;Parent=Msa0644380-mRNA-1
chr4_3	CDS	48228158	48228576	48228158	ID=Msa0644380-mRNA-1:cds;Parent=Msa0644380-mRNA-1
chr4_3	three_prime_UTR	48228577	48228963	48228577	ID=Msa0644380-mRNA-1:three_prime_utr;Parent=Msa0644380-mRNA-1

Gene Sequence

>Msa0644380

ATGACAGGAAACAAGGCTATGGGAGTTAGTATTGTTTCTGCCATGGGAGTTTGTTTGGGCAGCCAAATCAAAGCCGAAGGCCTGATTAATTTCGTTTCAGGGTTGAGTTCAAAGAGTGTGAATGGTGATACAGAAATTGTTGGTATCCCATGTTGCAAGGTTTCTGATGAACTCATTAGCTCACGTAATGCGGGAGAGATCTTGCAATCATCCAATTTGAAGAGTTTTACTTTGACAGAACTTCAGGCTGCAACTAGAAATTTTCGTGTAGATATTGTGTTAGGAGATGGCGATTTTGGATCAGTCTTTAAGGGCCGGATTGATGAACACTCACCTTCTGCTGCCAAACCTGGCACATGTGTTGCTCTTGGTGCTGCCAAAGGCCTTGCATTCCTTCACAGTGCCGAAATAAAAGCGATTTACCGAAATTTCAAGACTTCAAATATCTTGCTAGATTCAAATTATAATGCAAAACTCTCTAATTTTGGGCTGGCAAAGGATGGGTCCACGGGTGATAGAAGTCGTGTCTCCACCGGGCAAAGCTACGGATATGCAGCTCCAGAATACCTAGCCACCGGTAATCACACTTCTAAAAGTGATGTCTATAGTTTCGGAGTTGTCCTGTTGGAAATACTATCAGGTAGGAGAATCGGTGACAAGAATAGACCACTAAGACAACACAATTTGGTGGAATGGGCTAAGCCTTGTCTATCCAACAATCGTAAGATTTTGCGCGTGTTGGATAATCGCCGTGAAGGCCAATATGAAATAGAAGACGCCTATAAGGTTGCTTTACTTTCCCTACGGTGCCTTTCTACAGAAGCCAAGTTGAGACCAAACATGGATGAGGTTGTTACAAATTTGGAGCAGTTGCAGGTTCCTCATGTAAATGAAAGCAACAAGAATCGTTTTCGGAGAAAAAGTGCTGATGATGTTACCCATGTTAGAACAGCCACAGTAAATCCACAACGCAACAAAGTTATGGGAATTGGTATTGTTTCTGCGATGGGAGTTTGTTTAGGCGGCAAGGTCAAAGCTGAAAGCCCAATTAATTCAGGGTTAAGTTCGAAGGGTGTGATTGTCAATACAGAAGATCACCGTATCCCATGTTGCAAAATTTCTCATGATATCATTAGCTCAAGTAGTGAGGTATCAGCAGCTACGGTATCGGTGCCACAGACTCTTCCGCGTGTGGGGGAGATCTTGCAATCATCCAATTTGAAGAGCTTCACTTTGACAGAACTTCAGAATGCAACTAGAAATTTTCGTGTAGACAGTGTGTTAGGAGATGGTGATATTGGATCAGTTTTTAAAGGTTGGATTGATGAACACTCACCTTCTGCTGCCAAACCTGGCACAGGCATTGCTGTTGCTGTCAAAAGACTTAATCAAAATGGTTTCAAAGCCTGTGCTTGGTTCCGCAGTGGATTAGCAAATCTCACGTCTCAATGTAAGTTGACCGTGAATTTCACGATGCTGCAAAGTGAAGCTTCCATGCAGCCGTGCAGTGTGACCGCTGAAGTCAATAATCTGGGCCAACTATCACATCCTCATCTAGTGAAATTAATTGGTTATTGCCTTGAAGATGAAAACAACCTTCTGGTTTATGAATTCATGCCACGTGGCAGCTTGGAGAATCACTTGTTCATCAGAGGCTCATATTTTCAACCTCTTTCTTGGAGCCTACGTTTGAAGGTTGCTCTTGGTGTTGCTAAAGGCCTTACATTTCTTCGCAACGCTGAAACAAAAGGGAGATACCGCGATTTCAGTACCTCAAATGTCTTGCTAGATTCAAATTATAATGCAAAACTTTCTAAATTTGGACTTTCAAAGGGCGGGTCCACGGTTGAAAAAAGTCATGTCTCCACCAAGCAAACATACGGATACGCGGCTCCAGAGTACCTCGCCTCCGGTAATCACACTGCTAAAAGTGATGTATATAGTTTTGGAGTTGTGCTATTGGAAATATTATCAGGGAGGAGAGTTGTTGACAAGAATAGACCACCAAGTCAACACAATTTGGTGGAATGGGCTAAGCCTTATCTATCCAACAAGCGTAAGATTTTGCGCGTGTTGGATAGCCGTCTTGAAGGCCAATATGAATTAGAAGATGCCTATAAAGTTGCTACACTATCCCTACGGTGCCTTTCAATAGAAGCCAAGTTGAGACCAAACATGGATGAGGTTGTTACGGATTTGGAGAAGTTGCAGGTTCAAGATGTAAATGGCTGCAATCAGAATCGTTCGCATAGAAGAAGTGCTGATTATGTTACCCATGCCAGAACAACCGCAGCTTATCCACAACGCTCGGCTTCTATGTTCTGTACATGA

Protein sequence

>Msa0644380

MTGNKAMGVSIVSAMGVCLGSQIKAEGLINFVSGLSSKSVNGDTEIVGIPCCKVSDELISSRNAGEILQSSNLKSFTLTELQAATRNFRVDIVLGDGDFGSVFKGRIDEHSPSAAKPGTCVALGAAKGLAFLHSAEIKAIYRNFKTSNILLDSNYNAKLSNFGLAKDGSTGDRSRVSTGQSYGYAAPEYLATGNHTSKSDVYSFGVVLLEILSGRRIGDKNRPLRQHNLVEWAKPCLSNNRKILRVLDNRREGQYEIEDAYKVALLSLRCLSTEAKLRPNMDEVVTNLEQLQVPHVNESNKNRFRRKSADDVTHVRTATVNPQRNKVMGIGIVSAMGVCLGGKVKAESPINSGLSSKGVIVNTEDHRIPCCKISHDIISSSSEVSAATVSVPQTLPRVGEILQSSNLKSFTLTELQNATRNFRVDSVLGDGDIGSVFKGWIDEHSPSAAKPGTGIAVAVKRLNQNGFKACAWFRSGLANLTSQCKLTVNFTMLQSEASMQPCSVTAEVNNLGQLSHPHLVKLIGYCLEDENNLLVYEFMPRGSLENHLFIRGSYFQPLSWSLRLKVALGVAKGLTFLRNAETKGRYRDFSTSNVLLDSNYNAKLSKFGLSKGGSTVEKSHVSTKQTYGYAAPEYLASGNHTAKSDVYSFGVVLLEILSGRRVVDKNRPPSQHNLVEWAKPYLSNKRKILRVLDSRLEGQYELEDAYKVATLSLRCLSIEAKLRPNMDEVVTDLEKLQVQDVNGCNQNRSHRRSADYVTHARTTAAYPQRSASMFCT*