Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648110 | XP_024636893.1 | 82.828 | 396 | 23 | 4 | 1 | 387 | 1 | 360 | 0.0 | 593 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648110 | sp|Q54HG4|RMP_DICDI | 35.714 | 140 | 83 | 1 | 23 | 155 | 4 | 143 | 7.64e-21 | 97.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648110 | A0A396IG21 | 82.828 | 396 | 23 | 4 | 1 | 387 | 1 | 360 | 0.0 | 593 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0648110 | Msa1102220 | 0.835944 | 1.249020e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648110 | MtrunA17_Chr4g0040311 | 82.828 | 396 | 23 | 4 | 1 | 387 | 1 | 360 | 0.0 | 593 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 85 sgRNAs with CRISPR-Local
Find 334 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAATCTCAACAGTTTGTT+TGG | 0.251374 | 4_3:-54528068 | None:intergenic |
| TTGATGGAGTTCGTTGTTCT+TGG | 0.273774 | 4_3:-54527583 | None:intergenic |
| ACAGAAACTCAATTCTAAAA+TGG | 0.287294 | 4_3:-54531603 | None:intergenic |
| GTGGAAGATGCTACTAGTTC+TGG | 0.292179 | 4_3:+54530958 | Msa0648110:CDS |
| AGGAGGGTCTTGTGGAAATA+AGG | 0.298998 | 4_3:+54529023 | Msa0648110:intron |
| ATAATTTCAACTATTCAAAA+TGG | 0.302745 | 4_3:-54532659 | None:intergenic |
| GATTCATACCAATGAGTTCA+TGG | 0.312238 | 4_3:+54527834 | Msa0648110:CDS |
| AGCAGCATAGTCCATTTCTT+TGG | 0.312244 | 4_3:-54530992 | None:intergenic |
| AACGGCGGCGTCTAGGAAAA+TGG | 0.352781 | 4_3:+54527461 | Msa0648110:exon |
| TGCTGCTTTGTTATCTATGA+TGG | 0.367212 | 4_3:+54531008 | Msa0648110:CDS |
| CGATGAAAGCTCGTAGTTGA+TGG | 0.377277 | 4_3:-54527599 | None:intergenic |
| TGGCTGGGCCACGGAGGATG+GGG | 0.379075 | 4_3:+54527481 | Msa0648110:CDS |
| AATGGCTGGGCCACGGAGGA+TGG | 0.380702 | 4_3:+54527479 | Msa0648110:exon |
| CAAATGATGGTTGTGAAGTT+TGG | 0.383978 | 4_3:-54532173 | None:intergenic |
| GAGAAAGTAGATACAGGATT+AGG | 0.402746 | 4_3:+54532562 | Msa0648110:exon |
| ATATCGTGAGAGAGTTGTTC+AGG | 0.407916 | 4_3:-54527660 | None:intergenic |
| TTGACAACAGGTCTCTGAAA+TGG | 0.408095 | 4_3:-54531120 | None:intergenic |
| TACTTGGACATGGTTTCTCT+TGG | 0.409527 | 4_3:+54532857 | Msa0648110:three_prime_UTR |
| ATGGCTGGGCCACGGAGGAT+GGG | 0.427853 | 4_3:+54527480 | Msa0648110:CDS |
| GACGAAGAGGAATCTGAATC+AGG | 0.435675 | 4_3:+54529082 | Msa0648110:CDS |
| GCTTGAGATGTCTTCTCTCT+AGG | 0.435729 | 4_3:-54531679 | None:intergenic |
| TAAGATTGTTGATCATTAGC+TGG | 0.452294 | 4_3:-54528132 | None:intergenic |
| GCAAAGAAGAGGGAAGTCAT+TGG | 0.461823 | 4_3:+54528090 | Msa0648110:CDS |
| TGTATCCATAGATGGTTGCC+TGG | 0.464182 | 4_3:+54531569 | Msa0648110:intron |
| TGGAAGATGCTACTAGTTCT+GGG | 0.470844 | 4_3:+54530959 | Msa0648110:CDS |
| GAATGATACAGCCAAAGAAA+TGG | 0.480566 | 4_3:+54530981 | Msa0648110:CDS |
| AAGCCTGGCTGTTCAATCTC+AGG | 0.480661 | 4_3:+54531477 | Msa0648110:CDS |
| ATGGAGTTCGTTGTTCTTGG+CGG | 0.484173 | 4_3:-54527580 | None:intergenic |
| GGAGGGTCTTGTGGAAATAA+GGG | 0.493067 | 4_3:+54529024 | Msa0648110:intron |
| AAAGCTTACCATGAACTCAT+TGG | 0.499016 | 4_3:-54527842 | None:intergenic |
| GCGGCGTCTAGGAAAATGGC+TGG | 0.503246 | 4_3:+54527465 | Msa0648110:exon |
| ATCGGTGCAGGAGGGTCTTG+TGG | 0.503362 | 4_3:+54529015 | Msa0648110:intron |
| GAAAATGCAGTTTGAAAGCC+TGG | 0.503831 | 4_3:+54531462 | Msa0648110:intron |
| GCACAGCAACGGCGGCGTCT+AGG | 0.507400 | 4_3:+54527454 | Msa0648110:five_prime_UTR |
| AATGCAGAGAAAGTAGATAC+AGG | 0.508892 | 4_3:+54532556 | Msa0648110:exon |
| GGAAATAAGGGAAGAATATG+TGG | 0.509566 | 4_3:+54529036 | Msa0648110:CDS |
| GATAGCATCTTGAACGTGCT+TGG | 0.522586 | 4_3:-54527556 | None:intergenic |
| ACAACTCTCTCACGATATCA+TGG | 0.522753 | 4_3:+54527665 | Msa0648110:CDS |
| AGCAACTTCTGCGAAAATTG+AGG | 0.524617 | 4_3:+54531699 | Msa0648110:CDS |
| AGAACAAAGTTCAACTTCAC+AGG | 0.529545 | 4_3:+54532356 | Msa0648110:CDS |
| TTGTGTCTAATCTTATCTGA+AGG | 0.531451 | 4_3:+54531625 | Msa0648110:CDS |
| CCTCGCGTGGTGGCTCTCGA+CGG | 0.535760 | 4_3:-54527421 | None:intergenic |
| GTTTCTGAACGAGGCTAACA+AGG | 0.537479 | 4_3:-54527635 | None:intergenic |
| CTAGGAAAATGGCTGGGCCA+CGG | 0.545999 | 4_3:+54527472 | Msa0648110:exon |
| AGAAAGTTATTTGAAGCTCT+AGG | 0.546220 | 4_3:+54532585 | Msa0648110:three_prime_UTR |
| AGTTTCTCTGCCTCGCGTGG+TGG | 0.561812 | 4_3:-54527431 | None:intergenic |
| TCTTAACTCGTTTATCAAAG+TGG | 0.561910 | 4_3:+54528150 | Msa0648110:CDS |
| AAAATGGATGCAAACAGCCC+AGG | 0.562680 | 4_3:-54531587 | None:intergenic |
| ACCTTGCGACTATCAAATGA+TGG | 0.564328 | 4_3:-54532186 | None:intergenic |
| GTTAGTCTGATTCAGCGGTA+CGG | 0.566902 | 4_3:-54531266 | None:intergenic |
| TGTCTTCTCTCTAGGATCGA+TGG | 0.567027 | 4_3:-54531671 | None:intergenic |
| TGACCTGAGATTGAACAGCC+AGG | 0.567243 | 4_3:-54531480 | None:intergenic |
| GTATCCATAGATGGTTGCCT+GGG | 0.568440 | 4_3:+54531570 | Msa0648110:intron |
| CAACGACCACGCCGACGAAG+AGG | 0.570901 | 4_3:+54529069 | Msa0648110:CDS |
| TGCAGTTTCTCTGCCTCGCG+TGG | 0.571779 | 4_3:-54527434 | None:intergenic |
| AGTGGATTGGAATGAAAATG+AGG | 0.573229 | 4_3:+54532770 | Msa0648110:three_prime_UTR |
| CCGTCGAGAGCCACCACGCG+AGG | 0.579821 | 4_3:+54527421 | Msa0648110:five_prime_UTR |
| GGAAGAATATGTGGAGGACG+AGG | 0.583039 | 4_3:+54529045 | Msa0648110:CDS |
| GCAGAGAAACTGCACAGCAA+CGG | 0.583458 | 4_3:+54527443 | Msa0648110:five_prime_UTR |
| AGTGGCAGATTCTGAAGTAG+AGG | 0.587645 | 4_3:+54528168 | Msa0648110:CDS |
| TGATTCAGATTCCTCTTCGT+CGG | 0.588363 | 4_3:-54529080 | None:intergenic |
| CGCGTGGTGGCTCTCGACGG+TGG | 0.588666 | 4_3:-54527418 | None:intergenic |
| TGTGTCTAATCTTATCTGAA+GGG | 0.597755 | 4_3:+54531626 | Msa0648110:CDS |
| TTTCGATTCTTCATTCTACA+CGG | 0.600052 | 4_3:-54532690 | None:intergenic |
| GAACTAGTAGCATCTTCCAC+GGG | 0.605525 | 4_3:-54530955 | None:intergenic |
| ACCATCATTTGATAGTCGCA+AGG | 0.605641 | 4_3:+54532185 | Msa0648110:CDS |
| AGAACTAGTAGCATCTTCCA+CGG | 0.615277 | 4_3:-54530956 | None:intergenic |
| GAGAAACTGCACAGCAACGG+CGG | 0.618126 | 4_3:+54527446 | Msa0648110:five_prime_UTR |
| CTATTGTTAGTCTGATTCAG+CGG | 0.621021 | 4_3:-54531271 | None:intergenic |
| CAGATTCCTCTTCGTCGGCG+TGG | 0.630245 | 4_3:-54529075 | None:intergenic |
| TGAAGAATCGAAAGAAACGA+AGG | 0.631463 | 4_3:+54532700 | Msa0648110:three_prime_UTR |
| CGGCGTCTAGGAAAATGGCT+GGG | 0.631485 | 4_3:+54527466 | Msa0648110:exon |
| GTCACTGTCCCCATCCTCCG+TGG | 0.636408 | 4_3:-54527489 | None:intergenic |
| TTGGTATGAATCAAACGACC+AGG | 0.638171 | 4_3:-54527823 | None:intergenic |
| ACTCTCGGCATGCTCTACGA+TGG | 0.639103 | 4_3:-54532316 | None:intergenic |
| TGAGAAATGTTACTTGGACA+TGG | 0.639871 | 4_3:+54532847 | Msa0648110:three_prime_UTR |
| TGAATATAGTGATGAAGATG+AGG | 0.643014 | 4_3:+54531071 | Msa0648110:CDS |
| ACTGAGATGAGGAACATGAG+AGG | 0.643975 | 4_3:-54532933 | None:intergenic |
| TGGTGCAGTTAATGAAAATG+AGG | 0.644668 | 4_3:+54532813 | Msa0648110:three_prime_UTR |
| GGGGAGAACTGTGATTCGAG+TGG | 0.645993 | 4_3:-54527513 | None:intergenic |
| ATAACCCTCTCACTGAGATG+AGG | 0.654376 | 4_3:-54532944 | None:intergenic |
| GTTCAGGAAGTTTCTGAACG+AGG | 0.654762 | 4_3:-54527644 | None:intergenic |
| GGAAAATGGCTGGGCCACGG+AGG | 0.661664 | 4_3:+54527475 | Msa0648110:exon |
| AATAAGGGAAGAATATGTGG+AGG | 0.691473 | 4_3:+54529039 | Msa0648110:CDS |
| CGAATCACAGTTCTCCCCAG+AGG | 0.718873 | 4_3:+54527518 | Msa0648110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAATATTGTAATATATTT+GGG | + | chr4_3:54528641-54528660 | Msa0648110:intron | 10.0% |
| !!! | CAAAATTTTAGATTTATATA+GGG | + | chr4_3:54529128-54529147 | Msa0648110:intron | 10.0% |
| !!! | TTTTTTTAAATAAGAAATGT+TGG | + | chr4_3:54532793-54532812 | Msa0648110:three_prime_UTR | 10.0% |
| !! | TAAAAAAATCAACTCAAATT+AGG | - | chr4_3:54527913-54527932 | None:intergenic | 15.0% |
| !! | TCTTAAAATTATAAGAGAAA+TGG | - | chr4_3:54528203-54528222 | None:intergenic | 15.0% |
| !!! | TTTTAATTTTATTTGCATTG+TGG | + | chr4_3:54528226-54528245 | Msa0648110:intron | 15.0% |
| !! | AATAATTGATTAAAAAATGG+TGG | + | chr4_3:54528385-54528404 | Msa0648110:intron | 15.0% |
| !! | GATCAATATTGTAATATATT+TGG | + | chr4_3:54528640-54528659 | Msa0648110:intron | 15.0% |
| !!! | CCTATATAAATCTAAAATTT+TGG | - | chr4_3:54529130-54529149 | None:intergenic | 15.0% |
| !!! | CCAAAATTTTAGATTTATAT+AGG | + | chr4_3:54529127-54529146 | Msa0648110:intron | 15.0% |
| !!! | AATTTTTTTGAAATGATACT+GGG | - | chr4_3:54530335-54530354 | None:intergenic | 15.0% |
| !!! | TAATTTTTTTGAAATGATAC+TGG | - | chr4_3:54530336-54530355 | None:intergenic | 15.0% |
| !!! | AATAATGTTTATTTTGTAGT+TGG | + | chr4_3:54531777-54531796 | Msa0648110:intron | 15.0% |
| !! | AGAAATGATAAAGTAATTAA+GGG | + | chr4_3:54532038-54532057 | Msa0648110:intron | 15.0% |
| !! | ATAATTTCAACTATTCAAAA+TGG | - | chr4_3:54532662-54532681 | None:intergenic | 15.0% |
| !! | AAAATAAAAAGAGAAGAACA+AGG | - | chr4_3:54527700-54527719 | None:intergenic | 20.0% |
| !! | ATCAAAAATCTAAAAACAGT+TGG | - | chr4_3:54527724-54527743 | None:intergenic | 20.0% |
| !! | AAAAGTTTCGAAATTTGAAA+TGG | + | chr4_3:54527756-54527775 | Msa0648110:intron | 20.0% |
| !!! | AAAGTTTCGAAATTTGAAAT+GGG | + | chr4_3:54527757-54527776 | Msa0648110:intron | 20.0% |
| !!! | ATTCAATTTTTGTTTCTGAA+TGG | + | chr4_3:54527986-54528005 | Msa0648110:intron | 20.0% |
| !! | AATTAAGAAAATCACATTCA+AGG | - | chr4_3:54528768-54528787 | None:intergenic | 20.0% |
| !!! | TAAATTATTAATTGCTGTTG+TGG | + | chr4_3:54528988-54529007 | Msa0648110:intron | 20.0% |
| !! | TGTTCATTAACCATTATAAA+AGG | + | chr4_3:54529161-54529180 | Msa0648110:intron | 20.0% |
| !! | AATAAACCATAACTACTATT+CGG | - | chr4_3:54530134-54530153 | None:intergenic | 20.0% |
| !!! | TGGTTTATTATTTCTTGTTT+TGG | + | chr4_3:54530145-54530164 | Msa0648110:intron | 20.0% |
| !!! | GGTTTATTATTTCTTGTTTT+GGG | + | chr4_3:54530146-54530165 | Msa0648110:intron | 20.0% |
| !! | TAATTTCAATATTACCAACA+AGG | - | chr4_3:54530901-54530920 | None:intergenic | 20.0% |
| !!! | AATGTGACTTTCTTATTTTT+CGG | + | chr4_3:54531800-54531819 | Msa0648110:intron | 20.0% |
| !! | GAGAAATGATAAAGTAATTA+AGG | + | chr4_3:54532037-54532056 | Msa0648110:intron | 20.0% |
| !!! | AAAAAATGTTTCTAAGATCT+TGG | + | chr4_3:54532077-54532096 | Msa0648110:intron | 20.0% |
| !! | TGTATAATTATTTCCTTTAC+AGG | + | chr4_3:54532143-54532162 | Msa0648110:intron | 20.0% |
| !! | AATTTAAGTCAATGATGAAA+CGG | - | chr4_3:54532464-54532483 | None:intergenic | 20.0% |
| !! | ACTTAAATTTATGATGATCA+TGG | + | chr4_3:54532475-54532494 | Msa0648110:intron | 20.0% |
| !! | CTTAAATTTATGATGATCAT+GGG | + | chr4_3:54532476-54532495 | Msa0648110:intron | 20.0% |
| !!! | TTTCGAAACTTTTTCACAAA+GGG | - | chr4_3:54527749-54527768 | None:intergenic | 25.0% |
| !!! | ATTTCGAAACTTTTTCACAA+AGG | - | chr4_3:54527750-54527769 | None:intergenic | 25.0% |
| !!! | AATGGGTTTTTTCAATTTTC+AGG | + | chr4_3:54527774-54527793 | Msa0648110:intron | 25.0% |
| !!! | TAAGCTTTTTTGTTGTTGAA+TGG | + | chr4_3:54527857-54527876 | Msa0648110:intron | 25.0% |
| !!! | ATGCATTTTGTTATTCTAAC+CGG | + | chr4_3:54528266-54528285 | Msa0648110:intron | 25.0% |
| ! | AAATAGACCAACTTAAAATG+TGG | - | chr4_3:54528430-54528449 | None:intergenic | 25.0% |
| ! | TTTATGTTTCAGCAGAATTA+TGG | + | chr4_3:54528538-54528557 | Msa0648110:intron | 25.0% |
| !!! | ATGTTCAAAAAGAGCATTAA+AGG | - | chr4_3:54528712-54528731 | None:intergenic | 25.0% |
| ! | ACTAAGGCATACTAAAAAAT+GGG | - | chr4_3:54528935-54528954 | None:intergenic | 25.0% |
| ! | AACTAAGGCATACTAAAAAA+TGG | - | chr4_3:54528936-54528955 | None:intergenic | 25.0% |
| !! | TTAACACCAATTGATAACTA+AGG | - | chr4_3:54528951-54528970 | None:intergenic | 25.0% |
| !!! | TAAAATTTTGGAAAGCAAGA+AGG | - | chr4_3:54529118-54529137 | None:intergenic | 25.0% |
| ! | AATAAAAAATCTTCCGAGAA+AGG | - | chr4_3:54529229-54529248 | None:intergenic | 25.0% |
| ! | TTTATGGAAATGAAATTTCC+TGG | + | chr4_3:54529379-54529398 | Msa0648110:intron | 25.0% |
| ! | ACGAACTAAATGAATACTAA+TGG | + | chr4_3:54529582-54529601 | Msa0648110:intron | 25.0% |
| ! | CGAACTAAATGAATACTAAT+GGG | + | chr4_3:54529583-54529602 | Msa0648110:intron | 25.0% |
| !! | ATCTGTTTCTCTATTCTATT+AGG | + | chr4_3:54529664-54529683 | Msa0648110:intron | 25.0% |
| ! | TTCTCTATTCTATTAGGATT+AGG | + | chr4_3:54529670-54529689 | Msa0648110:intron | 25.0% |
| ! | GATGATTGTTTCAATTGAAT+TGG | - | chr4_3:54529959-54529978 | None:intergenic | 25.0% |
| ! | ATTGAAACAATCATCTTGTT+TGG | + | chr4_3:54529964-54529983 | Msa0648110:intron | 25.0% |
| ! | ATAAACCATAACTACTATTC+GGG | - | chr4_3:54530133-54530152 | None:intergenic | 25.0% |
| ! | TAAAGCCTAAATATCAACTA+TGG | - | chr4_3:54530231-54530250 | None:intergenic | 25.0% |
| !! | AATTATTTGAAACAAGCTTG+AGG | + | chr4_3:54530351-54530370 | Msa0648110:intron | 25.0% |
| ! | ATTTGTTTCCCTATTCAATT+AGG | + | chr4_3:54530483-54530502 | Msa0648110:intron | 25.0% |
| ! | AGTTAACAAATTCTGTTCAA+GGG | - | chr4_3:54530722-54530741 | None:intergenic | 25.0% |
| ! | AAGTTAACAAATTCTGTTCA+AGG | - | chr4_3:54530723-54530742 | None:intergenic | 25.0% |
| ! | TTTAAACTGTTTCATAAGCT+AGG | + | chr4_3:54530831-54530850 | Msa0648110:intron | 25.0% |
| !!! | TCTTGATGATTATGCTTTTT+CGG | - | chr4_3:54531316-54531335 | None:intergenic | 25.0% |
| ! | AAAAGCTGAAATAAGATAAC+AGG | - | chr4_3:54531376-54531395 | None:intergenic | 25.0% |
| !!! | GTTATCTTATTTCAGCTTTT+AGG | + | chr4_3:54531376-54531395 | Msa0648110:intron | 25.0% |
| !! | ACAGAAACTCAATTCTAAAA+TGG | - | chr4_3:54531606-54531625 | None:intergenic | 25.0% |
| ! | TGAAACCTCAATATAGTTTA+AGG | - | chr4_3:54531830-54531849 | None:intergenic | 25.0% |
| !! | CTTGAATAAATATTTTCTGC+AGG | + | chr4_3:54532281-54532300 | Msa0648110:intron | 25.0% |
| ! | AATAATCTTTCTTGTAAACG+TGG | + | chr4_3:54532417-54532436 | Msa0648110:intron | 25.0% |
| !! | TTTTGATGAGAAATGTTACT+TGG | + | chr4_3:54532841-54532860 | Msa0648110:three_prime_UTR | 25.0% |
| !!! | TTTTTGTTTCTGAATGGTGA+AGG | + | chr4_3:54527992-54528011 | Msa0648110:intron | 30.0% |
| !!! | TTTTGTTTCTGAATGGTGAA+GGG | + | chr4_3:54527993-54528012 | Msa0648110:intron | 30.0% |
| !! | TTTTGGTTGTTAGGTTCTTT+TGG | + | chr4_3:54528018-54528037 | Msa0648110:intron | 30.0% |
| ! | TTTGGTTGTTAGGTTCTTTT+GGG | + | chr4_3:54528019-54528038 | Msa0648110:intron | 30.0% |
| ! | CAAAATCTCAACAGTTTGTT+TGG | - | chr4_3:54528071-54528090 | None:intergenic | 30.0% |
| ! | TTGAGATTTTGCAAAGAAGA+GGG | + | chr4_3:54528080-54528099 | Msa0648110:CDS | 30.0% |
| TAAGATTGTTGATCATTAGC+TGG | - | chr4_3:54528135-54528154 | None:intergenic | 30.0% | |
| TCTTAACTCGTTTATCAAAG+TGG | + | chr4_3:54528150-54528169 | Msa0648110:CDS | 30.0% | |
| ! | ATTGTCAGTAACTAAGTTGA+AGG | + | chr4_3:54528357-54528376 | Msa0648110:intron | 30.0% |
| TTGATTAAAAAATGGTGGTC+TGG | + | chr4_3:54528390-54528409 | Msa0648110:intron | 30.0% | |
| !! | ATGCATACCACATTTTAAGT+TGG | + | chr4_3:54528420-54528439 | Msa0648110:intron | 30.0% |
| !!! | AAGTTGGTCTATTTTGATTG+AGG | + | chr4_3:54528436-54528455 | Msa0648110:intron | 30.0% |
| !!! | GTCTATTTTGATTGAGGTTT+CGG | + | chr4_3:54528442-54528461 | Msa0648110:intron | 30.0% |
| !!! | AGTTTTAGAACTAGCAGATT+AGG | + | chr4_3:54528594-54528613 | Msa0648110:intron | 30.0% |
| !!! | GTTTTAGAACTAGCAGATTA+GGG | + | chr4_3:54528595-54528614 | Msa0648110:intron | 30.0% |
| !!! | TTTTAGAACTAGCAGATTAG+GGG | + | chr4_3:54528596-54528615 | Msa0648110:intron | 30.0% |
| TTCCTTTGCAAAAACAAAGA+AGG | + | chr4_3:54528797-54528816 | Msa0648110:intron | 30.0% | |
| !!! | TACCTTCTTTGTTTTTGCAA+AGG | - | chr4_3:54528802-54528821 | None:intergenic | 30.0% |
| AAAAACAAAGAAGGTAGAAC+CGG | + | chr4_3:54528806-54528825 | Msa0648110:intron | 30.0% | |
| TTAAATTTGTGGTCGAACTT+GGG | + | chr4_3:54528829-54528848 | Msa0648110:intron | 30.0% | |
| AGTATGCCTTAGTTATCAAT+TGG | + | chr4_3:54528942-54528961 | Msa0648110:intron | 30.0% | |
| ! | AATTGCTGTTGTGGTTTAAT+CGG | + | chr4_3:54528997-54529016 | Msa0648110:intron | 30.0% |
| TAACCATTATAAAAGGAAGC+AGG | + | chr4_3:54529168-54529187 | Msa0648110:intron | 30.0% | |
| ATTATAAAAGGAAGCAGGTA+GGG | + | chr4_3:54529173-54529192 | Msa0648110:intron | 30.0% | |
| ! | ATTTAGTTCAAGTCCTTTCT+CGG | + | chr4_3:54529213-54529232 | Msa0648110:intron | 30.0% |
| ATTAATTGTAACCATCTGTC+AGG | + | chr4_3:54529278-54529297 | Msa0648110:intron | 30.0% | |
| ! | AGTGTTTAAAATAAGAGACC+AGG | - | chr4_3:54529400-54529419 | None:intergenic | 30.0% |
| !!! | ACTTTGTTTTAACCTATACG+TGG | - | chr4_3:54529514-54529533 | None:intergenic | 30.0% |
| AACAAAGAAACAGAGAAACT+GGG | - | chr4_3:54529729-54529748 | None:intergenic | 30.0% | |
| AAACAAAGAAACAGAGAAAC+TGG | - | chr4_3:54529730-54529749 | None:intergenic | 30.0% | |
| ! | AACAGATGATCGTTTCTTTT+GGG | - | chr4_3:54529882-54529901 | None:intergenic | 30.0% |
| ! | AAACAGATGATCGTTTCTTT+TGG | - | chr4_3:54529883-54529902 | None:intergenic | 30.0% |
| AAAAAGAAGTTTCATGTGAC+GGG | - | chr4_3:54530092-54530111 | None:intergenic | 30.0% | |
| GAAAAAGAAGTTTCATGTGA+CGG | - | chr4_3:54530093-54530112 | None:intergenic | 30.0% | |
| !! | AAACTTCTTTTTCGTCATTC+TGG | + | chr4_3:54530100-54530119 | Msa0648110:intron | 30.0% |
| AGATGTTTCTTTAGTGCTAT+TGG | + | chr4_3:54530190-54530209 | Msa0648110:intron | 30.0% | |
| AGTTATGTATGTTACCTCAT+AGG | + | chr4_3:54530435-54530454 | Msa0648110:intron | 30.0% | |
| TTCCCTATTCAATTAGGATT+AGG | + | chr4_3:54530489-54530508 | Msa0648110:intron | 30.0% | |
| CTCCTAATCCTAATTGAATA+GGG | - | chr4_3:54530494-54530513 | None:intergenic | 30.0% | |
| ACTCCTAATCCTAATTGAAT+AGG | - | chr4_3:54530495-54530514 | None:intergenic | 30.0% | |
| TGAATATAGTGATGAAGATG+AGG | + | chr4_3:54531071-54531090 | Msa0648110:CDS | 30.0% | |
| !! | CTTGATCAATTTGTTGTTTC+TGG | + | chr4_3:54531169-54531188 | Msa0648110:intron | 30.0% |
| CAATGAACTGTGATAACTTA+TGG | + | chr4_3:54531211-54531230 | Msa0648110:intron | 30.0% | |
| !! | TGGTTTATTTTCTATGAAGC+AGG | + | chr4_3:54531231-54531250 | Msa0648110:intron | 30.0% |
| !! | GGTTTATTTTCTATGAAGCA+GGG | + | chr4_3:54531232-54531251 | Msa0648110:intron | 30.0% |
| TATATAACTAACTACTCAGC+TGG | + | chr4_3:54531412-54531431 | Msa0648110:intron | 30.0% | |
| CATGAAACAAGCATATACAA+AGG | - | chr4_3:54531543-54531562 | None:intergenic | 30.0% | |
| CTTTGTATATGCTTGTTTCA+TGG | + | chr4_3:54531541-54531560 | Msa0648110:intron | 30.0% | |
| TTGTGTCTAATCTTATCTGA+AGG | + | chr4_3:54531625-54531644 | Msa0648110:CDS | 30.0% | |
| TGTGTCTAATCTTATCTGAA+GGG | + | chr4_3:54531626-54531645 | Msa0648110:CDS | 30.0% | |
| ! | TTATTGTAGTTTGTAACCTC+AGG | - | chr4_3:54531762-54531781 | None:intergenic | 30.0% |
| CAAGCAGTGGATAATTTATT+AGG | - | chr4_3:54531963-54531982 | None:intergenic | 30.0% | |
| AAACTACAGCTTAAGATTTC+AGG | + | chr4_3:54532103-54532122 | Msa0648110:intron | 30.0% | |
| !!! | TGAAGTTTTTGGTAAACTCT+CGG | - | chr4_3:54532334-54532353 | None:intergenic | 30.0% |
| ! | CTTTGTTCTCTTGAAGTTTT+TGG | - | chr4_3:54532345-54532364 | None:intergenic | 30.0% |
| !!! | CATGGGTTTGATATTTTAAC+AGG | + | chr4_3:54532493-54532512 | Msa0648110:intron | 30.0% |
| ! | AGAAAGTTATTTGAAGCTCT+AGG | + | chr4_3:54532585-54532604 | Msa0648110:three_prime_UTR | 30.0% |
| TTTCGATTCTTCATTCTACA+CGG | - | chr4_3:54532693-54532712 | None:intergenic | 30.0% | |
| !!! | TTCAATTTTCAGGTTCCGTT+TGG | + | chr4_3:54527784-54527803 | Msa0648110:intron | 35.0% |
| !!! | TCAATTTTCAGGTTCCGTTT+GGG | + | chr4_3:54527785-54527804 | Msa0648110:intron | 35.0% |
| GATTCATACCAATGAGTTCA+TGG | + | chr4_3:54527834-54527853 | Msa0648110:CDS | 35.0% | |
| AAAGCTTACCATGAACTCAT+TGG | - | chr4_3:54527845-54527864 | None:intergenic | 35.0% | |
| ! | GTTGAGATTTTGCAAAGAAG+AGG | + | chr4_3:54528079-54528098 | Msa0648110:CDS | 35.0% |
| CATACACACACACATTTAAC+CGG | - | chr4_3:54528288-54528307 | None:intergenic | 35.0% | |
| ATTAAAAAATGGTGGTCTGG+TGG | + | chr4_3:54528393-54528412 | Msa0648110:intron | 35.0% | |
| ! | GGCATGCTTTTATTGTTTGA+TGG | + | chr4_3:54528475-54528494 | Msa0648110:intron | 35.0% |
| CATGATTGTGGTGTAATCTT+TGG | + | chr4_3:54528670-54528689 | Msa0648110:intron | 35.0% | |
| GAAAATCACATTCAAGGACA+AGG | - | chr4_3:54528762-54528781 | None:intergenic | 35.0% | |
| AGTTCGACCACAAATTTAAC+CGG | - | chr4_3:54528828-54528847 | None:intergenic | 35.0% | |
| GTTAAATTTGTGGTCGAACT+TGG | + | chr4_3:54528828-54528847 | Msa0648110:intron | 35.0% | |
| AAGGCATACTAAAAAATGGG+AGG | - | chr4_3:54528932-54528951 | None:intergenic | 35.0% | |
| GGAAATAAGGGAAGAATATG+TGG | + | chr4_3:54529036-54529055 | Msa0648110:CDS | 35.0% | |
| AATAAGGGAAGAATATGTGG+AGG | + | chr4_3:54529039-54529058 | Msa0648110:CDS | 35.0% | |
| !! | ATTTTGGAAAGCAAGAAGGT+AGG | - | chr4_3:54529114-54529133 | None:intergenic | 35.0% |
| ! | CTACCTGCTTCCTTTTATAA+TGG | - | chr4_3:54529174-54529193 | None:intergenic | 35.0% |
| CATTATAAAAGGAAGCAGGT+AGG | + | chr4_3:54529172-54529191 | Msa0648110:intron | 35.0% | |
| ! | AGTTTTACATTCCATCACGT+TGG | + | chr4_3:54529323-54529342 | Msa0648110:intron | 35.0% |
| CGTGTAAATCATAAGCTTGA+TGG | - | chr4_3:54529765-54529784 | None:intergenic | 35.0% | |
| AAACAGAAGTGATCAAAGTG+AGG | - | chr4_3:54529819-54529838 | None:intergenic | 35.0% | |
| AATGACCACAAACAAGATGT+CGG | - | chr4_3:54529933-54529952 | None:intergenic | 35.0% | |
| !! | AAAATCACCGTTGATAGTCT+CGG | + | chr4_3:54530015-54530034 | Msa0648110:intron | 35.0% |
| TTTCTCCCGAATAGTAGTTA+TGG | + | chr4_3:54530125-54530144 | Msa0648110:intron | 35.0% | |
| ! | TTAGTGCTATTGGCATTCTT+TGG | + | chr4_3:54530200-54530219 | Msa0648110:intron | 35.0% |
| ! | TTGCGCCATAGTTGATATTT+AGG | + | chr4_3:54530223-54530242 | Msa0648110:intron | 35.0% |
| ! | TATTTGAAACAAGCTTGAGG+AGG | + | chr4_3:54530354-54530373 | Msa0648110:intron | 35.0% |
| ! | AGCACTATCGTCTCTTTTTA+GGG | - | chr4_3:54530525-54530544 | None:intergenic | 35.0% |
| !!! | AGACGATAGTGCTGTTTTTT+TGG | + | chr4_3:54530532-54530551 | Msa0648110:intron | 35.0% |
| ACTTCAACGTACAAGAAAAC+AGG | - | chr4_3:54530761-54530780 | None:intergenic | 35.0% | |
| !!! | TATTTTTTCAGATTCACCCG+TGG | + | chr4_3:54530939-54530958 | Msa0648110:intron | 35.0% |
| GAATGATACAGCCAAAGAAA+TGG | + | chr4_3:54530981-54531000 | Msa0648110:CDS | 35.0% | |
| !! | TGCTGCTTTGTTATCTATGA+TGG | + | chr4_3:54531008-54531027 | Msa0648110:CDS | 35.0% |
| !! | GAAGAGCTTGCTGAAAAAAA+TGG | + | chr4_3:54531048-54531067 | Msa0648110:CDS | 35.0% |
| !!! | TTTTTGGGATTGTTGACAAC+AGG | - | chr4_3:54531135-54531154 | None:intergenic | 35.0% |
| ! | GATACTACCTCTGGATTTTT+GGG | - | chr4_3:54531150-54531169 | None:intergenic | 35.0% |
| ! | AGATACTACCTCTGGATTTT+TGG | - | chr4_3:54531151-54531170 | None:intergenic | 35.0% |
| ATTGATCAAGATACTACCTC+TGG | - | chr4_3:54531159-54531178 | None:intergenic | 35.0% | |
| ! | CTATTGTTAGTCTGATTCAG+CGG | - | chr4_3:54531274-54531293 | None:intergenic | 35.0% |
| GCATGCCTTAAACTATATTG+AGG | + | chr4_3:54531822-54531841 | Msa0648110:intron | 35.0% | |
| TGGATAATTTATTAGGCGAG+AGG | - | chr4_3:54531956-54531975 | None:intergenic | 35.0% | |
| TCACAATACAATTCAAGCAG+TGG | - | chr4_3:54531976-54531995 | None:intergenic | 35.0% | |
| GAGAATTGAAGAAAAGAGGT+GGG | - | chr4_3:54532006-54532025 | None:intergenic | 35.0% | |
| TGAGGAGAATTGAAGAAAAG+AGG | - | chr4_3:54532010-54532029 | None:intergenic | 35.0% | |
| TATCATTTCTCTCTCTTGTG+AGG | - | chr4_3:54532028-54532047 | None:intergenic | 35.0% | |
| CAAATGATGGTTGTGAAGTT+TGG | - | chr4_3:54532176-54532195 | None:intergenic | 35.0% | |
| ! | TATTTTCTGCAGGCTTTTAC+AGG | + | chr4_3:54532291-54532310 | Msa0648110:intron | 35.0% |
| AGAACAAAGTTCAACTTCAC+AGG | + | chr4_3:54532356-54532375 | Msa0648110:CDS | 35.0% | |
| ! | TAAACGTGGCTTTTGTACTA+TGG | + | chr4_3:54532431-54532450 | Msa0648110:intron | 35.0% |
| ! | CTTTCTCTGCATTTTGAATC+TGG | - | chr4_3:54532549-54532568 | None:intergenic | 35.0% |
| AATGCAGAGAAAGTAGATAC+AGG | + | chr4_3:54532556-54532575 | Msa0648110:exon | 35.0% | |
| GAGAAAGTAGATACAGGATT+AGG | + | chr4_3:54532562-54532581 | Msa0648110:exon | 35.0% | |
| TGAAGAATCGAAAGAAACGA+AGG | + | chr4_3:54532700-54532719 | Msa0648110:three_prime_UTR | 35.0% | |
| !! | AGTGGATTGGAATGAAAATG+AGG | + | chr4_3:54532770-54532789 | Msa0648110:three_prime_UTR | 35.0% |
| TGGTGCAGTTAATGAAAATG+AGG | + | chr4_3:54532813-54532832 | Msa0648110:three_prime_UTR | 35.0% | |
| ! | TGAGAAATGTTACTTGGACA+TGG | + | chr4_3:54532847-54532866 | Msa0648110:three_prime_UTR | 35.0% |
| !! | TAGCGTTTTGAACATCCTCT+GGG | - | chr4_3:54527536-54527555 | None:intergenic | 40.0% |
| TTGATGGAGTTCGTTGTTCT+TGG | - | chr4_3:54527586-54527605 | None:intergenic | 40.0% | |
| ATATCGTGAGAGAGTTGTTC+AGG | - | chr4_3:54527663-54527682 | None:intergenic | 40.0% | |
| ACAACTCTCTCACGATATCA+TGG | + | chr4_3:54527665-54527684 | Msa0648110:CDS | 40.0% | |
| AAAAACGCAGCTTTCCCAAA+CGG | - | chr4_3:54527802-54527821 | None:intergenic | 40.0% | |
| TTGGTATGAATCAAACGACC+AGG | - | chr4_3:54527826-54527845 | None:intergenic | 40.0% | |
| TGAGCTGCGAGAAAATTACA+AGG | + | chr4_3:54527949-54527968 | Msa0648110:intron | 40.0% | |
| GAGCTGCGAGAAAATTACAA+GGG | + | chr4_3:54527950-54527969 | Msa0648110:intron | 40.0% | |
| !!! | TGAAGGGTGTTTTGGTTGTT+AGG | + | chr4_3:54528009-54528028 | Msa0648110:intron | 40.0% |
| !! | TGTTAGGTTCTTTTGGGAGA+AGG | + | chr4_3:54528025-54528044 | Msa0648110:intron | 40.0% |
| TTGATTGAGGTTTCGGTTGT+TGG | + | chr4_3:54528449-54528468 | Msa0648110:intron | 40.0% | |
| CTAAAACTGCACCACAATGT+GGG | - | chr4_3:54528582-54528601 | None:intergenic | 40.0% | |
| ! | TCTAAAACTGCACCACAATG+TGG | - | chr4_3:54528583-54528602 | None:intergenic | 40.0% |
| TTTGGGCACTAACATGATTG+TGG | + | chr4_3:54528658-54528677 | Msa0648110:intron | 40.0% | |
| GGTAGAACCGGTTAAATTTG+TGG | + | chr4_3:54528818-54528837 | Msa0648110:intron | 40.0% | |
| TGATTCAGATTCCTCTTCGT+CGG | - | chr4_3:54529083-54529102 | None:intergenic | 40.0% | |
| TGCTTATGATACCAACGTGA+TGG | - | chr4_3:54529337-54529356 | None:intergenic | 40.0% | |
| AGCTTTCTGATACCACGTAT+AGG | + | chr4_3:54529499-54529518 | Msa0648110:intron | 40.0% | |
| CAAGATGTCGGCAATAAACT+TGG | - | chr4_3:54529921-54529940 | None:intergenic | 40.0% | |
| ! | TATTGCCGACATCTTGTTTG+TGG | + | chr4_3:54529925-54529944 | Msa0648110:intron | 40.0% |
| !! | TCTTGTTTGGCTCTAGTCAT+TGG | + | chr4_3:54529977-54529996 | Msa0648110:intron | 40.0% |
| !! | AAATCACCGTTGATAGTCTC+GGG | + | chr4_3:54530016-54530035 | Msa0648110:intron | 40.0% |
| !! | ACATCTGAAAGCACTGCAAT+AGG | - | chr4_3:54530176-54530195 | None:intergenic | 40.0% |
| TCAAAGTTGCAACACTTTCC+AGG | + | chr4_3:54530282-54530301 | Msa0648110:intron | 40.0% | |
| ! | CAGCACTATCGTCTCTTTTT+AGG | - | chr4_3:54530526-54530545 | None:intergenic | 40.0% |
| TTACAAGTGTGGTCATTGGT+TGG | - | chr4_3:54530870-54530889 | None:intergenic | 40.0% | |
| AACCAATGACCACACTTGTA+AGG | + | chr4_3:54530869-54530888 | Msa0648110:intron | 40.0% | |
| AACCTTACAAGTGTGGTCAT+TGG | - | chr4_3:54530874-54530893 | None:intergenic | 40.0% | |
| TTGTAAGGTTGTTGCCTTGT+TGG | + | chr4_3:54530884-54530903 | Msa0648110:intron | 40.0% | |
| AGAACTAGTAGCATCTTCCA+CGG | - | chr4_3:54530959-54530978 | None:intergenic | 40.0% | |
| ! | TGGAAGATGCTACTAGTTCT+GGG | + | chr4_3:54530959-54530978 | Msa0648110:CDS | 40.0% |
| AGCAGCATAGTCCATTTCTT+TGG | - | chr4_3:54530995-54531014 | None:intergenic | 40.0% | |
| ! | TTGACAACAGGTCTCTGAAA+TGG | - | chr4_3:54531123-54531142 | None:intergenic | 40.0% |
| CAACAATCCCAAAAATCCAG+AGG | + | chr4_3:54531140-54531159 | Msa0648110:CDS | 40.0% | |
| GAAAATGCAGTTTGAAAGCC+TGG | + | chr4_3:54531462-54531481 | Msa0648110:intron | 40.0% | |
| ! | TGGTTCTGTGTATCCATAGA+TGG | + | chr4_3:54531561-54531580 | Msa0648110:intron | 40.0% |
| AGCAACTTCTGCGAAAATTG+AGG | + | chr4_3:54531699-54531718 | Msa0648110:CDS | 40.0% | |
| TACTATCTTGCTTTGACCTG+AGG | + | chr4_3:54531743-54531762 | Msa0648110:intron | 40.0% | |
| GACGGGTCTCAATGATTATA+AGG | - | chr4_3:54531925-54531944 | None:intergenic | 40.0% | |
| GGAGAATTGAAGAAAAGAGG+TGG | - | chr4_3:54532007-54532026 | None:intergenic | 40.0% | |
| ! | ACCATCATTTGATAGTCGCA+AGG | + | chr4_3:54532185-54532204 | Msa0648110:CDS | 40.0% |
| ACCTTGCGACTATCAAATGA+TGG | - | chr4_3:54532189-54532208 | None:intergenic | 40.0% | |
| ! | CTGCTGCATATTTTGTTGCA+GGG | - | chr4_3:54532250-54532269 | None:intergenic | 40.0% |
| ! | ACTGCTGCATATTTTGTTGC+AGG | - | chr4_3:54532251-54532270 | None:intergenic | 40.0% |
| AGTCAATGATGAAACGGCAA+AGG | - | chr4_3:54532458-54532477 | None:intergenic | 40.0% | |
| !!! | TGGTTTTGAAGGTTGAGAAC+TGG | - | chr4_3:54532522-54532541 | None:intergenic | 40.0% |
| !!! | AATCTGGAGACTGGTTTTGA+AGG | - | chr4_3:54532533-54532552 | None:intergenic | 40.0% |
| ! | TGCATTTTGAATCTGGAGAC+TGG | - | chr4_3:54532542-54532561 | None:intergenic | 40.0% |
| ! | ACAACTTTTCTGCTTTGCAG+TGG | + | chr4_3:54532752-54532771 | Msa0648110:three_prime_UTR | 40.0% |
| ! | TTTTCTGCTTTGCAGTGGAT+TGG | + | chr4_3:54532757-54532776 | Msa0648110:three_prime_UTR | 40.0% |
| TACTTGGACATGGTTTCTCT+TGG | + | chr4_3:54532857-54532876 | Msa0648110:three_prime_UTR | 40.0% | |
| !! | AGCGTTTTGAACATCCTCTG+GGG | - | chr4_3:54527535-54527554 | None:intergenic | 45.0% |
| !! | GTAGCGTTTTGAACATCCTC+TGG | - | chr4_3:54527537-54527556 | None:intergenic | 45.0% |
| GATAGCATCTTGAACGTGCT+TGG | - | chr4_3:54527559-54527578 | None:intergenic | 45.0% | |
| ATGGAGTTCGTTGTTCTTGG+CGG | - | chr4_3:54527583-54527602 | None:intergenic | 45.0% | |
| CGATGAAAGCTCGTAGTTGA+TGG | - | chr4_3:54527602-54527621 | None:intergenic | 45.0% | |
| GTTTCTGAACGAGGCTAACA+AGG | - | chr4_3:54527638-54527657 | None:intergenic | 45.0% | |
| GTTCAGGAAGTTTCTGAACG+AGG | - | chr4_3:54527647-54527666 | None:intergenic | 45.0% | |
| !!! | CTGAATGGTGAAGGGTGTTT+TGG | + | chr4_3:54528001-54528020 | Msa0648110:intron | 45.0% |
| GCAAAGAAGAGGGAAGTCAT+TGG | + | chr4_3:54528090-54528109 | Msa0648110:CDS | 45.0% | |
| !! | AGTGGCAGATTCTGAAGTAG+AGG | + | chr4_3:54528168-54528187 | Msa0648110:CDS | 45.0% |
| ! | GCTTGATAGCATTGCGAAAG+TGG | + | chr4_3:54528510-54528529 | Msa0648110:intron | 45.0% |
| ! | CAGATTAGGGGACTGTTTTG+TGG | + | chr4_3:54528608-54528627 | Msa0648110:intron | 45.0% |
| ATTCAAGGACAAGGTGTGGA+AGG | - | chr4_3:54528753-54528772 | None:intergenic | 45.0% | |
| TCACATTCAAGGACAAGGTG+TGG | - | chr4_3:54528757-54528776 | None:intergenic | 45.0% | |
| GTTTCTCGTGCTACATTGTC+TGG | + | chr4_3:54528874-54528893 | Msa0648110:intron | 45.0% | |
| TGTTGTGGTTTAATCGGTGC+AGG | + | chr4_3:54529003-54529022 | Msa0648110:intron | 45.0% | |
| ! | AGGAGGGTCTTGTGGAAATA+AGG | + | chr4_3:54529023-54529042 | Msa0648110:intron | 45.0% |
| ! | GGAGGGTCTTGTGGAAATAA+GGG | + | chr4_3:54529024-54529043 | Msa0648110:intron | 45.0% |
| GACGAAGAGGAATCTGAATC+AGG | + | chr4_3:54529082-54529101 | Msa0648110:CDS | 45.0% | |
| ATAAAAGGAAGCAGGTAGGG+AGG | + | chr4_3:54529176-54529195 | Msa0648110:intron | 45.0% | |
| CAGAACTAAGACCTGACAGA+TGG | - | chr4_3:54529292-54529311 | None:intergenic | 45.0% | |
| GTATCAGAAAGCTGAGAGCT+GGG | - | chr4_3:54529492-54529511 | None:intergenic | 45.0% | |
| CAGTCGACAAGATCAAACGA+AGG | - | chr4_3:54529701-54529720 | None:intergenic | 45.0% | |
| GTTGGGTAGCAAGAACGTAT+AGG | - | chr4_3:54529792-54529811 | None:intergenic | 45.0% | |
| AGCACAAAGGGAAGCTGAAA+TGG | - | chr4_3:54529845-54529864 | None:intergenic | 45.0% | |
| !! | TGATGGTGACTTAGCCTTGA+TGG | - | chr4_3:54530061-54530080 | None:intergenic | 45.0% |
| !! | CTGAAAGCACTGCAATAGGT+GGG | - | chr4_3:54530172-54530191 | None:intergenic | 45.0% |
| !! | TCTGAAAGCACTGCAATAGG+TGG | - | chr4_3:54530173-54530192 | None:intergenic | 45.0% |
| GTTGCAACACTTTCCAGGTA+TGG | + | chr4_3:54530287-54530306 | Msa0648110:intron | 45.0% | |
| TGATACTGGGACAGTGCTTA+CGG | - | chr4_3:54530322-54530341 | None:intergenic | 45.0% | |
| CCAAGTGAACTACTCCTATG+AGG | - | chr4_3:54530452-54530471 | None:intergenic | 45.0% | |
| CCTCATAGGAGTAGTTCACT+TGG | + | chr4_3:54530449-54530468 | Msa0648110:intron | 45.0% | |
| AGGCAACAACCTTACAAGTG+TGG | - | chr4_3:54530881-54530900 | None:intergenic | 45.0% | |
| GAACTAGTAGCATCTTCCAC+GGG | - | chr4_3:54530958-54530977 | None:intergenic | 45.0% | |
| GTGGAAGATGCTACTAGTTC+TGG | + | chr4_3:54530958-54530977 | Msa0648110:CDS | 45.0% | |
| ! | GTTAGTCTGATTCAGCGGTA+CGG | - | chr4_3:54531269-54531288 | None:intergenic | 45.0% |
| TGTATCCATAGATGGTTGCC+TGG | + | chr4_3:54531569-54531588 | Msa0648110:intron | 45.0% | |
| GTATCCATAGATGGTTGCCT+GGG | + | chr4_3:54531570-54531589 | Msa0648110:intron | 45.0% | |
| AAAATGGATGCAAACAGCCC+AGG | - | chr4_3:54531590-54531609 | None:intergenic | 45.0% | |
| !! | TGTCTTCTCTCTAGGATCGA+TGG | - | chr4_3:54531674-54531693 | None:intergenic | 45.0% |
| GCTTGAGATGTCTTCTCTCT+AGG | - | chr4_3:54531682-54531701 | None:intergenic | 45.0% | |
| !! | GTTTGGTGTTGAGCCTGTAA+AGG | - | chr4_3:54532159-54532178 | None:intergenic | 45.0% |
| ! | TTGCAGGGCATTATGACTCA+TGG | - | chr4_3:54532235-54532254 | None:intergenic | 45.0% |
| !! | TATAATAATTGATTAAAAAA+TGG | + | chr4_3:54528382-54528401 | Msa0648110:intron | 5.0% |
| !!! | ATTAATTATTTTAATGTTTA+TGG | + | chr4_3:54529363-54529382 | Msa0648110:intron | 5.0% |
| GCAGAGAAACTGCACAGCAA+CGG | + | chr4_3:54527443-54527462 | Msa0648110:five_prime_UTR | 50.0% | |
| !!! | GGGAAAGCTGCGTTTTTTCC+TGG | + | chr4_3:54527805-54527824 | Msa0648110:CDS | 50.0% |
| CTCGCAGCTCAATTCAGTCT+AGG | - | chr4_3:54527940-54527959 | None:intergenic | 50.0% | |
| TGAGGTTTCGGTTGTTGGTC+TGG | + | chr4_3:54528454-54528473 | Msa0648110:intron | 50.0% | |
| ACAATGTGGGTATACCAGCG+TGG | - | chr4_3:54528569-54528588 | None:intergenic | 50.0% | |
| ACGCTGGTATACCCACATTG+TGG | + | chr4_3:54528568-54528587 | Msa0648110:intron | 50.0% | |
| TCTCGTGCTACATTGTCTGG+TGG | + | chr4_3:54528877-54528896 | Msa0648110:intron | 50.0% | |
| CTCGTGCTACATTGTCTGGT+GGG | + | chr4_3:54528878-54528897 | Msa0648110:intron | 50.0% | |
| TCGTGCTACATTGTCTGGTG+GGG | + | chr4_3:54528879-54528898 | Msa0648110:intron | 50.0% | |
| TGTGGTTTAATCGGTGCAGG+AGG | + | chr4_3:54529006-54529025 | Msa0648110:intron | 50.0% | |
| GTGGTTTAATCGGTGCAGGA+GGG | + | chr4_3:54529007-54529026 | Msa0648110:intron | 50.0% | |
| GGAAGAATATGTGGAGGACG+AGG | + | chr4_3:54529045-54529064 | Msa0648110:CDS | 50.0% | |
| GGTATCAGAAAGCTGAGAGC+TGG | - | chr4_3:54529493-54529512 | None:intergenic | 50.0% | |
| GATCAAAGTGAGGCGAGGTT+GGG | - | chr4_3:54529809-54529828 | None:intergenic | 50.0% | |
| TGATCAAAGTGAGGCGAGGT+TGG | - | chr4_3:54529810-54529829 | None:intergenic | 50.0% | |
| GAAGTGATCAAAGTGAGGCG+AGG | - | chr4_3:54529814-54529833 | None:intergenic | 50.0% | |
| GTGACCAGACAGAGCACAAA+GGG | - | chr4_3:54529857-54529876 | None:intergenic | 50.0% | |
| TGTGACCAGACAGAGCACAA+AGG | - | chr4_3:54529858-54529877 | None:intergenic | 50.0% | |
| !! | TGGTGACTTAGCCTTGATGG+TGG | - | chr4_3:54530058-54530077 | None:intergenic | 50.0% |
| CTTTCCAGGTATGGCTACAG+CGG | + | chr4_3:54530296-54530315 | Msa0648110:intron | 50.0% | |
| AAGCCTGGCTGTTCAATCTC+AGG | + | chr4_3:54531477-54531496 | Msa0648110:CDS | 50.0% | |
| TGACCTGAGATTGAACAGCC+AGG | - | chr4_3:54531483-54531502 | None:intergenic | 50.0% | |
| GCTGTTCAATCTCAGGTCAG+AGG | + | chr4_3:54531484-54531503 | Msa0648110:intron | 50.0% | |
| AGGCGAGAGGAATGAGATGA+CGG | - | chr4_3:54531943-54531962 | None:intergenic | 50.0% | |
| GAGAAACTGCACAGCAACGG+CGG | + | chr4_3:54527446-54527465 | Msa0648110:five_prime_UTR | 55.0% | |
| AACGGCGGCGTCTAGGAAAA+TGG | + | chr4_3:54527461-54527480 | Msa0648110:exon | 55.0% | |
| CGGCGTCTAGGAAAATGGCT+GGG | + | chr4_3:54527466-54527485 | Msa0648110:exon | 55.0% | |
| CTAGGAAAATGGCTGGGCCA+CGG | + | chr4_3:54527472-54527491 | Msa0648110:exon | 55.0% | |
| GGGGAGAACTGTGATTCGAG+TGG | - | chr4_3:54527516-54527535 | None:intergenic | 55.0% | |
| CGAATCACAGTTCTCCCCAG+AGG | + | chr4_3:54527518-54527537 | Msa0648110:CDS | 55.0% | |
| GTGTGTGTGTGTGCGCATCA+TGG | + | chr4_3:54528309-54528328 | Msa0648110:intron | 55.0% | |
| GAATTATGGCGAGACCACGC+TGG | + | chr4_3:54528552-54528571 | Msa0648110:intron | 55.0% | |
| GCTTCCCTTTGTGCTCTGTC+TGG | + | chr4_3:54529850-54529869 | Msa0648110:intron | 55.0% | |
| CGACTGCCCGAGACTATCAA+CGG | - | chr4_3:54530025-54530044 | None:intergenic | 55.0% | |
| GTGCTGTCTAGCCACCATCA+AGG | + | chr4_3:54530044-54530063 | Msa0648110:intron | 55.0% | |
| !! | TGTGACGGGTGATGACGTGA+TGG | - | chr4_3:54530078-54530097 | None:intergenic | 55.0% |
| ACAGCCCAGGCAACCATCTA+TGG | - | chr4_3:54531577-54531596 | None:intergenic | 55.0% | |
| GGCGAGAGGAATGAGATGAC+GGG | - | chr4_3:54531942-54531961 | None:intergenic | 55.0% | |
| ACTCTCGGCATGCTCTACGA+TGG | - | chr4_3:54532319-54532338 | None:intergenic | 55.0% | |
| AGTTTCTCTGCCTCGCGTGG+TGG | - | chr4_3:54527434-54527453 | None:intergenic | 60.0% | |
| TGCAGTTTCTCTGCCTCGCG+TGG | - | chr4_3:54527437-54527456 | None:intergenic | 60.0% | |
| GCGGCGTCTAGGAAAATGGC+TGG | + | chr4_3:54527465-54527484 | Msa0648110:exon | 60.0% | |
| ATCGGTGCAGGAGGGTCTTG+TGG | + | chr4_3:54529015-54529034 | Msa0648110:intron | 60.0% | |
| CAGATTCCTCTTCGTCGGCG+TGG | - | chr4_3:54529078-54529097 | None:intergenic | 60.0% | |
| GGAAAATGGCTGGGCCACGG+AGG | + | chr4_3:54527475-54527494 | Msa0648110:exon | 65.0% | |
| AATGGCTGGGCCACGGAGGA+TGG | + | chr4_3:54527479-54527498 | Msa0648110:exon | 65.0% | |
| ATGGCTGGGCCACGGAGGAT+GGG | + | chr4_3:54527480-54527499 | Msa0648110:CDS | 65.0% | |
| GTCACTGTCCCCATCCTCCG+TGG | - | chr4_3:54527492-54527511 | None:intergenic | 65.0% | |
| CAACGACCACGCCGACGAAG+AGG | + | chr4_3:54529069-54529088 | Msa0648110:CDS | 65.0% | |
| ACGGCCGCTGTAGCCATACC+TGG | - | chr4_3:54530303-54530322 | None:intergenic | 65.0% | |
| CCTCGCGTGGTGGCTCTCGA+CGG | - | chr4_3:54527424-54527443 | None:intergenic | 70.0% | |
| GCACAGCAACGGCGGCGTCT+AGG | + | chr4_3:54527454-54527473 | Msa0648110:five_prime_UTR | 70.0% | |
| TGGCTGGGCCACGGAGGATG+GGG | + | chr4_3:54527481-54527500 | Msa0648110:CDS | 70.0% | |
| CGCGTGGTGGCTCTCGACGG+TGG | - | chr4_3:54527421-54527440 | None:intergenic | 75.0% | |
| CCGTCGAGAGCCACCACGCG+AGG | + | chr4_3:54527421-54527440 | Msa0648110:five_prime_UTR | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 54527389 | 54532952 | 54527389 | ID=Msa0648110;Name=Msa0648110 |
| chr4_3 | mRNA | 54527389 | 54532952 | 54527389 | ID=Msa0648110-mRNA-1;Parent=Msa0648110;Name=Msa0648110-mRNA-1;_AED=0.11;_eAED=0.11;_QI=91|0.9|0.81|1|1|1|11|381|387 |
| chr4_3 | exon | 54527389 | 54527686 | 54527389 | ID=Msa0648110-mRNA-1:exon:13774;Parent=Msa0648110-mRNA-1 |
| chr4_3 | exon | 54527796 | 54527855 | 54527796 | ID=Msa0648110-mRNA-1:exon:13775;Parent=Msa0648110-mRNA-1 |
| chr4_3 | exon | 54528031 | 54528189 | 54528031 | ID=Msa0648110-mRNA-1:exon:13776;Parent=Msa0648110-mRNA-1 |
| chr4_3 | exon | 54529025 | 54529103 | 54529025 | ID=Msa0648110-mRNA-1:exon:13777;Parent=Msa0648110-mRNA-1 |
| chr4_3 | exon | 54530950 | 54531161 | 54530950 | ID=Msa0648110-mRNA-1:exon:13778;Parent=Msa0648110-mRNA-1 |
| chr4_3 | exon | 54531253 | 54531357 | 54531253 | ID=Msa0648110-mRNA-1:exon:13779;Parent=Msa0648110-mRNA-1 |
| chr4_3 | exon | 54531472 | 54531498 | 54531472 | ID=Msa0648110-mRNA-1:exon:13780;Parent=Msa0648110-mRNA-1 |
| chr4_3 | exon | 54531580 | 54531720 | 54531580 | ID=Msa0648110-mRNA-1:exon:13781;Parent=Msa0648110-mRNA-1 |
| chr4_3 | exon | 54532165 | 54532206 | 54532165 | ID=Msa0648110-mRNA-1:exon:13782;Parent=Msa0648110-mRNA-1 |
| chr4_3 | exon | 54532303 | 54532377 | 54532303 | ID=Msa0648110-mRNA-1:exon:13783;Parent=Msa0648110-mRNA-1 |
| chr4_3 | exon | 54532515 | 54532952 | 54532515 | ID=Msa0648110-mRNA-1:exon:13784;Parent=Msa0648110-mRNA-1 |
| chr4_3 | five_prime_UTR | 54527389 | 54527479 | 54527389 | ID=Msa0648110-mRNA-1:five_prime_utr;Parent=Msa0648110-mRNA-1 |
| chr4_3 | CDS | 54527480 | 54527686 | 54527480 | ID=Msa0648110-mRNA-1:cds;Parent=Msa0648110-mRNA-1 |
| chr4_3 | CDS | 54527796 | 54527855 | 54527796 | ID=Msa0648110-mRNA-1:cds;Parent=Msa0648110-mRNA-1 |
| chr4_3 | CDS | 54528031 | 54528189 | 54528031 | ID=Msa0648110-mRNA-1:cds;Parent=Msa0648110-mRNA-1 |
| chr4_3 | CDS | 54529025 | 54529103 | 54529025 | ID=Msa0648110-mRNA-1:cds;Parent=Msa0648110-mRNA-1 |
| chr4_3 | CDS | 54530950 | 54531161 | 54530950 | ID=Msa0648110-mRNA-1:cds;Parent=Msa0648110-mRNA-1 |
| chr4_3 | CDS | 54531253 | 54531357 | 54531253 | ID=Msa0648110-mRNA-1:cds;Parent=Msa0648110-mRNA-1 |
| chr4_3 | CDS | 54531472 | 54531498 | 54531472 | ID=Msa0648110-mRNA-1:cds;Parent=Msa0648110-mRNA-1 |
| chr4_3 | CDS | 54531580 | 54531720 | 54531580 | ID=Msa0648110-mRNA-1:cds;Parent=Msa0648110-mRNA-1 |
| chr4_3 | CDS | 54532165 | 54532206 | 54532165 | ID=Msa0648110-mRNA-1:cds;Parent=Msa0648110-mRNA-1 |
| chr4_3 | CDS | 54532303 | 54532377 | 54532303 | ID=Msa0648110-mRNA-1:cds;Parent=Msa0648110-mRNA-1 |
| chr4_3 | CDS | 54532515 | 54532571 | 54532515 | ID=Msa0648110-mRNA-1:cds;Parent=Msa0648110-mRNA-1 |
| chr4_3 | three_prime_UTR | 54532572 | 54532952 | 54532572 | ID=Msa0648110-mRNA-1:three_prime_utr;Parent=Msa0648110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
