Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648210 | KEH30701.1 | 93.072 | 332 | 17 | 1 | 5 | 330 | 230 | 561 | 0.0 | 649 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648210 | sp|F4IVI0|BUB1_ARATH | 70.130 | 308 | 92 | 0 | 23 | 330 | 218 | 525 | 3.36e-164 | 471 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648210 | A0A072UMU0 | 93.072 | 332 | 17 | 1 | 5 | 330 | 230 | 561 | 0.0 | 649 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0648210 | Msa0730930 | 0.801250 | 9.839033e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648210 | MtrunA17_Chr4g0040351 | 93.072 | 332 | 17 | 1 | 5 | 330 | 198 | 529 | 0.0 | 649 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648210 | AT2G20635.1 | 70.130 | 308 | 92 | 0 | 23 | 330 | 218 | 525 | 3.41e-165 | 471 |
Find 101 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAGATCACACGGTATTTA+AGG | 0.142154 | 4_3:+54677783 | Msa0648210:CDS |
| TATTTAACCTTGATTTATAT+TGG | 0.192543 | 4_3:+54678673 | Msa0648210:three_prime_UTR |
| TTCCAATGTGAATTTGTTTC+CGG | 0.219134 | 4_3:+54678632 | Msa0648210:three_prime_UTR |
| AACAAGAGCAATTGTTTAAC+TGG | 0.250934 | 4_3:-54675468 | None:intergenic |
| ATGAGGAATATACCGTTTAA+AGG | 0.268852 | 4_3:-54678073 | None:intergenic |
| AGGGTCTCTGTCTTGTTGAC+TGG | 0.285319 | 4_3:+54677734 | Msa0648210:intron |
| GGATAGGCCGTGGAAATTTC+AGG | 0.295323 | 4_3:+54677849 | Msa0648210:CDS |
| GCTAATGCATGGCAATTAAA+AGG | 0.298137 | 4_3:-54678785 | None:intergenic |
| AAGGGAGATTGTAGGACTTC+TGG | 0.299891 | 4_3:+54677802 | Msa0648210:CDS |
| GTTTCTAAAGTGAGCAAATA+AGG | 0.303094 | 4_3:-54678738 | None:intergenic |
| CATGATGTTGGCTTGATTCA+TGG | 0.315489 | 4_3:+54676178 | Msa0648210:CDS |
| CCAGATCACACGGTATTTAA+GGG | 0.329918 | 4_3:+54677784 | Msa0648210:CDS |
| ATGGTACTTAATTCCACCTT+TGG | 0.343378 | 4_3:-54675508 | None:intergenic |
| ATTTAACCTTGATTTATATT+GGG | 0.344177 | 4_3:+54678674 | Msa0648210:three_prime_UTR |
| TCCAATGTGAATTTGTTTCC+GGG | 0.350888 | 4_3:+54678633 | Msa0648210:three_prime_UTR |
| TAACGAATAAGCAGATTATC+AGG | 0.372673 | 4_3:-54676211 | None:intergenic |
| GATGCTGCATAATACCTATA+TGG | 0.374786 | 4_3:+54677996 | Msa0648210:CDS |
| ATACCGTTTAAAGGGTAGTC+TGG | 0.385293 | 4_3:-54678064 | None:intergenic |
| TTCATGTATATCAACGAATT+CGG | 0.385582 | 4_3:+54678947 | Msa0648210:three_prime_UTR |
| ATCTTTCAGAGGTCAAACTA+TGG | 0.389080 | 4_3:+54675902 | Msa0648210:intron |
| TATCAAGGGCTGTGCTGGAC+AGG | 0.396395 | 4_3:+54675530 | Msa0648210:CDS |
| GGAATTGAAGAAGTCCTTCC+AGG | 0.400891 | 4_3:+54678372 | Msa0648210:CDS |
| GTCCAGCACAGCCCTTGATA+TGG | 0.404136 | 4_3:-54675527 | None:intergenic |
| CCCTTAAATACCGTGTGATC+TGG | 0.410725 | 4_3:-54677784 | None:intergenic |
| AGGAGTATGTGATGGAAAAC+AGG | 0.412583 | 4_3:-54678591 | None:intergenic |
| TACCATATCAAGGGCTGTGC+TGG | 0.414405 | 4_3:+54675525 | Msa0648210:CDS |
| GGGTCTCTGTCTTGTTGACT+GGG | 0.421552 | 4_3:+54677735 | Msa0648210:intron |
| TTCCCAGACTACCCTTTAAA+CGG | 0.426277 | 4_3:+54678061 | Msa0648210:CDS |
| TGTCTTGTTGACTGGGGAAG+AGG | 0.428927 | 4_3:+54677742 | Msa0648210:CDS |
| ACTACCCTGGCCATGATGAT+AGG | 0.432249 | 4_3:+54678338 | Msa0648210:CDS |
| CTTTAACCCAATATAAATCA+AGG | 0.436169 | 4_3:-54678680 | None:intergenic |
| ATGTAATTTGAGTAACCATC+TGG | 0.437291 | 4_3:+54678841 | Msa0648210:three_prime_UTR |
| GTCTGTAATTATTTAGCTCA+TGG | 0.445369 | 4_3:+54675968 | Msa0648210:CDS |
| ATTTCCATAAGCTGCTTCCT+TGG | 0.447361 | 4_3:+54675436 | None:intergenic |
| AAGAGTCTTGTCCGTGACTA+AGG | 0.448895 | 4_3:-54678611 | None:intergenic |
| AAGCGGTTGTTGGCATGATC+AGG | 0.450027 | 4_3:+54677635 | Msa0648210:CDS |
| GCAGATGCATATGGCCTTTG+CGG | 0.453201 | 4_3:+54677961 | Msa0648210:CDS |
| TGAGGAATATACCGTTTAAA+GGG | 0.455127 | 4_3:-54678072 | None:intergenic |
| TTTAGTGCCACAACTTCATC+AGG | 0.455442 | 4_3:-54675594 | None:intergenic |
| ATCAACTCATATGTGGTCAT+AGG | 0.457303 | 4_3:+54676088 | Msa0648210:CDS |
| TGTGGTCATAGGAAAATTCA+TGG | 0.457949 | 4_3:+54676099 | Msa0648210:CDS |
| TGGAATTAAGTACCATATCA+AGG | 0.458109 | 4_3:+54675515 | Msa0648210:CDS |
| TGATGATAGGAAGTTGTTGC+AGG | 0.460062 | 4_3:+54678351 | Msa0648210:CDS |
| AACTTCCTATCATCATGGCC+AGG | 0.468707 | 4_3:-54678343 | None:intergenic |
| AGGGGTAACCTCACAGAAGA+TGG | 0.471394 | 4_3:+54677600 | Msa0648210:intron |
| TGTCAACAGGCAGATGCATA+TGG | 0.477835 | 4_3:+54677952 | Msa0648210:intron |
| GTCTTGTTGACTGGGGAAGA+GGG | 0.481446 | 4_3:+54677743 | Msa0648210:CDS |
| GCTCTTGTTTGTCCTTGTCA+TGG | 0.481848 | 4_3:+54675482 | Msa0648210:CDS |
| TCTTAGACCGAAGCGGTTGT+TGG | 0.486235 | 4_3:+54677625 | Msa0648210:CDS |
| ATTGAAACTTTGCATGATGT+TGG | 0.493369 | 4_3:+54676166 | Msa0648210:CDS |
| CGGTATTTAAGGGAGATTGT+AGG | 0.498060 | 4_3:+54677794 | Msa0648210:CDS |
| GTCCTTGTCATGGCATCCAA+AGG | 0.499078 | 4_3:+54675492 | Msa0648210:CDS |
| TTGAGTTTCTTTATACGTTG+AGG | 0.503378 | 4_3:-54678412 | None:intergenic |
| GATCATGCCAACAACCGCTT+CGG | 0.504689 | 4_3:-54677632 | None:intergenic |
| TAAAACTCCCAAGGGAAAGC+TGG | 0.507197 | 4_3:-54675713 | None:intergenic |
| TACTCAAATTACATAATACA+AGG | 0.515399 | 4_3:-54678832 | None:intergenic |
| AGGAGTTACTCGCGAAGCAA+AGG | 0.517311 | 4_3:+54678434 | Msa0648210:CDS |
| GGAGTTACTCGCGAAGCAAA+GGG | 0.529180 | 4_3:+54678435 | Msa0648210:CDS |
| TTTAGCTCATGGGACACTAC+AGG | 0.533494 | 4_3:+54675979 | Msa0648210:CDS |
| GCATTGAGATGCAGGAGGAT+AGG | 0.536057 | 4_3:+54677833 | Msa0648210:CDS |
| CTAACAATTAGCATCTATAG+AGG | 0.536777 | 4_3:-54678807 | None:intergenic |
| GTTACTGGAACGTCGAGCTA+TGG | 0.540651 | 4_3:+54678287 | Msa0648210:intron |
| ACACTTGCATGTGCGCGTCC+CGG | 0.540995 | 4_3:-54678651 | None:intergenic |
| TACCGTTTAAAGGGTAGTCT+GGG | 0.543989 | 4_3:-54678063 | None:intergenic |
| TCTGTAATTATTTAGCTCAT+GGG | 0.545403 | 4_3:+54675969 | Msa0648210:CDS |
| TTAACTGGAACTTTCGTCCA+AGG | 0.551902 | 4_3:-54675453 | None:intergenic |
| TGATGAAGTTGTGGCACTAA+AGG | 0.552634 | 4_3:+54675596 | Msa0648210:CDS |
| GATCAGAGCTGATATAGTCC+TGG | 0.561424 | 4_3:-54678390 | None:intergenic |
| GCAACAACTTCCTATCATCA+TGG | 0.569220 | 4_3:-54678348 | None:intergenic |
| CACCTTTGGATGCCATGACA+AGG | 0.570471 | 4_3:-54675494 | None:intergenic |
| CAATACTATAAAGTGAAGCA+AGG | 0.576715 | 4_3:+54678707 | Msa0648210:three_prime_UTR |
| ATCAAGGGCTGTGCTGGACA+GGG | 0.576821 | 4_3:+54675531 | Msa0648210:CDS |
| ATAGACAGCTACAGCAGAAG+TGG | 0.580758 | 4_3:-54678499 | None:intergenic |
| CAGTAATCCTGATGAAGTTG+TGG | 0.583892 | 4_3:+54675587 | Msa0648210:CDS |
| CGATACATGTAAAACTCCCA+AGG | 0.587726 | 4_3:-54675722 | None:intergenic |
| GGAATTAAGTACCATATCAA+GGG | 0.593763 | 4_3:+54675516 | Msa0648210:CDS |
| AGATGCAGGAGGATAGGCCG+TGG | 0.601296 | 4_3:+54677839 | Msa0648210:CDS |
| ATCTGCTTATTCGTTATGCT+AGG | 0.602539 | 4_3:+54676218 | Msa0648210:CDS |
| GGATGTCATCAACTCATATG+TGG | 0.602720 | 4_3:+54676081 | Msa0648210:intron |
| TCAACGTATAAAGAAACTCA+AGG | 0.607844 | 4_3:+54678414 | Msa0648210:CDS |
| AATACTATAAAGTGAAGCAA+GGG | 0.607975 | 4_3:+54678708 | Msa0648210:three_prime_UTR |
| GGGGTAACCTCACAGAAGAT+GGG | 0.608152 | 4_3:+54677601 | Msa0648210:intron |
| AGAGCTGATATAGTCCTGGA+AGG | 0.609239 | 4_3:-54678386 | None:intergenic |
| CTTGTCATGGCATCCAAAGG+TGG | 0.609586 | 4_3:+54675495 | Msa0648210:CDS |
| GATTGTTAAGTTTCACTCGA+AGG | 0.616728 | 4_3:+54678920 | Msa0648210:three_prime_UTR |
| ACTTCCTATCATCATGGCCA+GGG | 0.620638 | 4_3:-54678342 | None:intergenic |
| TCCCGGAAACAAATTCACAT+TGG | 0.621279 | 4_3:-54678634 | None:intergenic |
| TGACTCACCTGAAATTTCCA+CGG | 0.621709 | 4_3:-54677856 | None:intergenic |
| CGTGACTAAGGAGTATGTGA+TGG | 0.637275 | 4_3:-54678599 | None:intergenic |
| TAATCTCTTTCCAGATCACA+CGG | 0.648178 | 4_3:+54677774 | Msa0648210:CDS |
| CATCTATAGAGGCTAATGCA+TGG | 0.649406 | 4_3:-54678796 | None:intergenic |
| CATCACATACTCCTTAGTCA+CGG | 0.652729 | 4_3:+54678600 | Msa0648210:three_prime_UTR |
| TCGTATGAACAACACCGCAA+AGG | 0.654155 | 4_3:-54677975 | None:intergenic |
| GGTCTCTGTCTTGTTGACTG+GGG | 0.656870 | 4_3:+54677736 | Msa0648210:CDS |
| GATACATGTAAAACTCCCAA+GGG | 0.657048 | 4_3:-54675721 | None:intergenic |
| AAGGGCTGTGCTGGACAGGG+AGG | 0.672386 | 4_3:+54675534 | Msa0648210:CDS |
| GATGGGTTCTTAGACCGAAG+CGG | 0.673200 | 4_3:+54677618 | Msa0648210:CDS |
| TCGATGCATTGAGATGCAGG+AGG | 0.674555 | 4_3:+54677828 | Msa0648210:CDS |
| ACTCAAATTACATAATACAA+GGG | 0.690575 | 4_3:-54678831 | None:intergenic |
| AAGATGCTTAATGACTACCC+TGG | 0.701217 | 4_3:+54678325 | Msa0648210:CDS |
| CTAAGAACCCATCTTCTGTG+AGG | 0.704393 | 4_3:-54677608 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTATATTATTTTGTTTTTA+AGG | + | chr4_3:54676486-54676505 | Msa0648210:intron | 10.0% |
| !!! | TAATTTTTATTCTGATAATT+TGG | + | chr4_3:54678249-54678268 | Msa0648210:intron | 10.0% |
| !!! | ATGTTATATTTCTATGTATA+GGG | - | chr4_3:54675649-54675668 | None:intergenic | 15.0% |
| !!! | TATGTTATATTTCTATGTAT+AGG | - | chr4_3:54675650-54675669 | None:intergenic | 15.0% |
| !!! | ATTTTAATTTTACAAAACTG+AGG | - | chr4_3:54676296-54676315 | None:intergenic | 15.0% |
| !! | TTCTATATCTAAAAAAAGTA+GGG | + | chr4_3:54676433-54676452 | Msa0648210:intron | 15.0% |
| !! | TAAAACATATTATAATGTCA+GGG | - | chr4_3:54676834-54676853 | None:intergenic | 15.0% |
| !! | ATAAAACATATTATAATGTC+AGG | - | chr4_3:54676835-54676854 | None:intergenic | 15.0% |
| !!! | ATAATATGTTTTATCTTTCA+TGG | + | chr4_3:54676841-54676860 | Msa0648210:intron | 15.0% |
| !!! | ATACATTTTTTTTATCTTTC+AGG | + | chr4_3:54677714-54677733 | Msa0648210:intron | 15.0% |
| !!! | TACATTTTTTTTATCTTTCA+GGG | + | chr4_3:54677715-54677734 | Msa0648210:intron | 15.0% |
| !! | AAATTAAAGTTGAAAACAAA+AGG | - | chr4_3:54678235-54678254 | None:intergenic | 15.0% |
| !! | TATTTAACCTTGATTTATAT+TGG | + | chr4_3:54678673-54678692 | Msa0648210:three_prime_UTR | 15.0% |
| !! | ATTTAACCTTGATTTATATT+GGG | + | chr4_3:54678674-54678693 | Msa0648210:three_prime_UTR | 15.0% |
| !!! | TGTTATATTTCTATGTATAG+GGG | - | chr4_3:54675648-54675667 | None:intergenic | 20.0% |
| !!! | CTACTTTTTTTAGATATAGA+AGG | - | chr4_3:54676434-54676453 | None:intergenic | 20.0% |
| !! | CTTCTATATCTAAAAAAAGT+AGG | + | chr4_3:54676432-54676451 | Msa0648210:intron | 20.0% |
| !! | TCTATATCTAAAAAAAGTAG+GGG | + | chr4_3:54676434-54676453 | Msa0648210:intron | 20.0% |
| !!! | TTATTTTGTTTTTAAGGATG+TGG | + | chr4_3:54676492-54676511 | Msa0648210:intron | 20.0% |
| !!! | TATTTTGTTTTTAAGGATGT+GGG | + | chr4_3:54676493-54676512 | Msa0648210:intron | 20.0% |
| !! | AATGATTCTATGACTAATTT+GGG | - | chr4_3:54676791-54676810 | None:intergenic | 20.0% |
| !! | TAATGATTCTATGACTAATT+TGG | - | chr4_3:54676792-54676811 | None:intergenic | 20.0% |
| !! | ATTAAAAGACAAATGATTTG+TGG | + | chr4_3:54677161-54677180 | Msa0648210:intron | 20.0% |
| !!! | ATTGTTTTCGTTATTTTGAA+GGG | + | chr4_3:54677581-54677600 | Msa0648210:intron | 20.0% |
| !!! | ATCAGATGATTCTTTTTTAA+CGG | - | chr4_3:54678025-54678044 | None:intergenic | 20.0% |
| !! | TTAAAAAAGAATCATCTGAT+GGG | + | chr4_3:54678025-54678044 | Msa0648210:CDS | 20.0% |
| !! | ACTCAAATTACATAATACAA+GGG | - | chr4_3:54678834-54678853 | None:intergenic | 20.0% |
| !! | TACTCAAATTACATAATACA+AGG | - | chr4_3:54678835-54678854 | None:intergenic | 20.0% |
| !! | GTTATATTTCTATGTATAGG+GGG | - | chr4_3:54675647-54675666 | None:intergenic | 25.0% |
| ! | ATATAACATATTGTCTCATC+AGG | + | chr4_3:54675660-54675679 | Msa0648210:intron | 25.0% |
| !! | TCTGTAATTATTTAGCTCAT+GGG | + | chr4_3:54675969-54675988 | Msa0648210:CDS | 25.0% |
| ! | AGTAACAGTACAAAAACAAT+GGG | - | chr4_3:54676469-54676488 | None:intergenic | 25.0% |
| ! | TAGTAACAGTACAAAAACAA+TGG | - | chr4_3:54676470-54676489 | None:intergenic | 25.0% |
| !!! | ATTTTGTTTTTAAGGATGTG+GGG | + | chr4_3:54676494-54676513 | Msa0648210:intron | 25.0% |
| !!! | GTAAAGTATCATCCTTATTT+TGG | + | chr4_3:54676540-54676559 | Msa0648210:intron | 25.0% |
| ! | TAAGAAGACATGCATAAAAA+AGG | + | chr4_3:54676654-54676673 | Msa0648210:intron | 25.0% |
| ! | TTATGATAGTTGTATCATTC+AGG | + | chr4_3:54676868-54676887 | Msa0648210:intron | 25.0% |
| ! | TATGATAGTTGTATCATTCA+GGG | + | chr4_3:54676869-54676888 | Msa0648210:intron | 25.0% |
| ! | ACTATGCTAAAAGTTCAATT+TGG | - | chr4_3:54676916-54676935 | None:intergenic | 25.0% |
| ! | TTCATCTAAATTCAGTTGTA+TGG | + | chr4_3:54677039-54677058 | Msa0648210:intron | 25.0% |
| !!! | CAAAAGTGTTAATCATTTAC+TGG | + | chr4_3:54677321-54677340 | Msa0648210:intron | 25.0% |
| !!! | CATTGTTTTCGTTATTTTGA+AGG | + | chr4_3:54677580-54677599 | Msa0648210:intron | 25.0% |
| !!! | TTGTTTTCGTTATTTTGAAG+GGG | + | chr4_3:54677582-54677601 | Msa0648210:intron | 25.0% |
| !!! | TTTTTTAACGGTTTCCATAT+AGG | - | chr4_3:54678013-54678032 | None:intergenic | 25.0% |
| ! | GTTAAAAAAGAATCATCTGA+TGG | + | chr4_3:54678024-54678043 | Msa0648210:CDS | 25.0% |
| ! | TAAAAAAGAATCATCTGATG+GGG | + | chr4_3:54678026-54678045 | Msa0648210:CDS | 25.0% |
| ! | TTGGATGTAACTATAAAATG+AGG | - | chr4_3:54678093-54678112 | None:intergenic | 25.0% |
| !! | TACTTTTGTACTCTATGATT+AGG | + | chr4_3:54678117-54678136 | Msa0648210:intron | 25.0% |
| !! | ACTTTTGTACTCTATGATTA+GGG | + | chr4_3:54678118-54678137 | Msa0648210:intron | 25.0% |
| !!! | CCAAATTGATTTTACCAAAT+CGG | - | chr4_3:54678186-54678205 | None:intergenic | 25.0% |
| ! | TAAAATCAATTTGGAAGCTA+TGG | + | chr4_3:54678192-54678211 | Msa0648210:intron | 25.0% |
| ! | AAAGTTGAAAACAAAAGGAA+GGG | - | chr4_3:54678230-54678249 | None:intergenic | 25.0% |
| ! | TAAAGTTGAAAACAAAAGGA+AGG | - | chr4_3:54678231-54678250 | None:intergenic | 25.0% |
| ! | CTTTAACCCAATATAAATCA+AGG | - | chr4_3:54678683-54678702 | None:intergenic | 25.0% |
| ! | AATACTATAAAGTGAAGCAA+GGG | + | chr4_3:54678708-54678727 | Msa0648210:three_prime_UTR | 25.0% |
| ! | TTCATGTATATCAACGAATT+CGG | + | chr4_3:54678947-54678966 | Msa0648210:three_prime_UTR | 25.0% |
| AACAAGAGCAATTGTTTAAC+TGG | - | chr4_3:54675471-54675490 | None:intergenic | 30.0% | |
| TGGAATTAAGTACCATATCA+AGG | + | chr4_3:54675515-54675534 | Msa0648210:CDS | 30.0% | |
| GGAATTAAGTACCATATCAA+GGG | + | chr4_3:54675516-54675535 | Msa0648210:CDS | 30.0% | |
| ! | GTCTGTAATTATTTAGCTCA+TGG | + | chr4_3:54675968-54675987 | Msa0648210:CDS | 30.0% |
| AGATAATGAGGGAAATCAAA+AGG | - | chr4_3:54676015-54676034 | None:intergenic | 30.0% | |
| TTCAACAGAAAATTCTATGC+AGG | + | chr4_3:54676060-54676079 | Msa0648210:intron | 30.0% | |
| ATTGAAACTTTGCATGATGT+TGG | + | chr4_3:54676166-54676185 | Msa0648210:CDS | 30.0% | |
| TAACGAATAAGCAGATTATC+AGG | - | chr4_3:54676214-54676233 | None:intergenic | 30.0% | |
| AGACAAATTATCGAGGTAAA+AGG | - | chr4_3:54676342-54676361 | None:intergenic | 30.0% | |
| TGAAAAGAGACAAATTATCG+AGG | - | chr4_3:54676349-54676368 | None:intergenic | 30.0% | |
| !!! | GTATCATCCTTATTTTGGAT+AGG | + | chr4_3:54676545-54676564 | Msa0648210:intron | 30.0% |
| TAGTTGTCCTATCCAAAATA+AGG | - | chr4_3:54676555-54676574 | None:intergenic | 30.0% | |
| TGAACAGATCTTGATGTATT+CGG | - | chr4_3:54676620-54676639 | None:intergenic | 30.0% | |
| ! | TTGAACTTTTAGCATAGTCA+TGG | + | chr4_3:54676918-54676937 | Msa0648210:intron | 30.0% |
| ATGGTTTACTCTCTTACATT+TGG | + | chr4_3:54676980-54676999 | Msa0648210:intron | 30.0% | |
| AAATGATCAACGTAAGAAGT+TGG | - | chr4_3:54677012-54677031 | None:intergenic | 30.0% | |
| CTAAATTCAGTTGTATGGAA+TGG | + | chr4_3:54677044-54677063 | Msa0648210:intron | 30.0% | |
| AAGTTAAAGTATGGTGGTAT+AGG | + | chr4_3:54677349-54677368 | Msa0648210:intron | 30.0% | |
| AAAAAAGAATCATCTGATGG+GGG | + | chr4_3:54678027-54678046 | Msa0648210:CDS | 30.0% | |
| TGAGGAATATACCGTTTAAA+GGG | - | chr4_3:54678075-54678094 | None:intergenic | 30.0% | |
| ATGAGGAATATACCGTTTAA+AGG | - | chr4_3:54678076-54678095 | None:intergenic | 30.0% | |
| TAGAGTACAAAAGTAGCAAT+TGG | - | chr4_3:54678112-54678131 | None:intergenic | 30.0% | |
| ! | CTTTTGTACTCTATGATTAG+GGG | + | chr4_3:54678119-54678138 | Msa0648210:intron | 30.0% |
| !! | CCGATTTGGTAAAATCAATT+TGG | + | chr4_3:54678183-54678202 | Msa0648210:intron | 30.0% |
| TTGTTGTATCAAACAGTTAC+TGG | + | chr4_3:54678272-54678291 | Msa0648210:intron | 30.0% | |
| TTGAGTTTCTTTATACGTTG+AGG | - | chr4_3:54678415-54678434 | None:intergenic | 30.0% | |
| TCAACGTATAAAGAAACTCA+AGG | + | chr4_3:54678414-54678433 | Msa0648210:CDS | 30.0% | |
| ! | TTCCAATGTGAATTTGTTTC+CGG | + | chr4_3:54678632-54678651 | Msa0648210:three_prime_UTR | 30.0% |
| CAATACTATAAAGTGAAGCA+AGG | + | chr4_3:54678707-54678726 | Msa0648210:three_prime_UTR | 30.0% | |
| !! | GTTTCTAAAGTGAGCAAATA+AGG | - | chr4_3:54678741-54678760 | None:intergenic | 30.0% |
| CTAACAATTAGCATCTATAG+AGG | - | chr4_3:54678810-54678829 | None:intergenic | 30.0% | |
| ATGTAATTTGAGTAACCATC+TGG | + | chr4_3:54678841-54678860 | Msa0648210:three_prime_UTR | 30.0% | |
| TGAAAAAGTTACATTCCAGA+TGG | - | chr4_3:54678859-54678878 | None:intergenic | 30.0% | |
| ATGGTACTTAATTCCACCTT+TGG | - | chr4_3:54675511-54675530 | None:intergenic | 35.0% | |
| ! | AGGTTTTGCTCAAGTATACA+AGG | + | chr4_3:54675554-54675573 | Msa0648210:CDS | 35.0% |
| !!! | TCAGGTTGCATTTTGAAACT+TGG | + | chr4_3:54675678-54675697 | Msa0648210:intron | 35.0% |
| GATACATGTAAAACTCCCAA+GGG | - | chr4_3:54675724-54675743 | None:intergenic | 35.0% | |
| ! | TTCATAGAAAAGCAGGTTGA+TGG | - | chr4_3:54675799-54675818 | None:intergenic | 35.0% |
| GTAGATGTTCATAGAAAAGC+AGG | - | chr4_3:54675806-54675825 | None:intergenic | 35.0% | |
| ! | TTCATAGAAAAGCAGGTTGA+TGG | - | chr4_3:54675799-54675818 | None:intergenic | 35.0% |
| GTAGATGTTCATAGAAAAGC+AGG | - | chr4_3:54675806-54675825 | None:intergenic | 35.0% | |
| CTGACATCTTAATCTTTCAG+AGG | + | chr4_3:54675891-54675910 | Msa0648210:intron | 35.0% | |
| ATCTTTCAGAGGTCAAACTA+TGG | + | chr4_3:54675902-54675921 | Msa0648210:intron | 35.0% | |
| GATGTTGAACGAGATAATGA+GGG | - | chr4_3:54676026-54676045 | None:intergenic | 35.0% | |
| TGATGTTGAACGAGATAATG+AGG | - | chr4_3:54676027-54676046 | None:intergenic | 35.0% | |
| ATCAACTCATATGTGGTCAT+AGG | + | chr4_3:54676088-54676107 | Msa0648210:CDS | 35.0% | |
| TGTGGTCATAGGAAAATTCA+TGG | + | chr4_3:54676099-54676118 | Msa0648210:CDS | 35.0% | |
| ATCTGCTTATTCGTTATGCT+AGG | + | chr4_3:54676218-54676237 | Msa0648210:CDS | 35.0% | |
| ATTATCGAGGTAAAAGGCAA+GGG | - | chr4_3:54676336-54676355 | None:intergenic | 35.0% | |
| AATTATCGAGGTAAAAGGCA+AGG | - | chr4_3:54676337-54676356 | None:intergenic | 35.0% | |
| ! | TTTTCCCCGTCTTAATTTTG+AGG | + | chr4_3:54676403-54676422 | Msa0648210:intron | 35.0% |
| ! | TTTCCCCGTCTTAATTTTGA+GGG | + | chr4_3:54676404-54676423 | Msa0648210:intron | 35.0% |
| ATACCCTCAAAATTAAGACG+GGG | - | chr4_3:54676410-54676429 | None:intergenic | 35.0% | |
| CATACCCTCAAAATTAAGAC+GGG | - | chr4_3:54676411-54676430 | None:intergenic | 35.0% | |
| GCATACCCTCAAAATTAAGA+CGG | - | chr4_3:54676412-54676431 | None:intergenic | 35.0% | |
| GATACTTTACTAGATGCAGA+GGG | - | chr4_3:54676530-54676549 | None:intergenic | 35.0% | |
| TGATACTTTACTAGATGCAG+AGG | - | chr4_3:54676531-54676550 | None:intergenic | 35.0% | |
| !!! | GGGACTATTTTGATGATTCA+AGG | + | chr4_3:54676889-54676908 | Msa0648210:intron | 35.0% |
| CAGTTTCAGGACTAAAATGA+TGG | + | chr4_3:54676961-54676980 | Msa0648210:intron | 35.0% | |
| CTAATTTCTAAGCATCCATG+TGG | + | chr4_3:54677075-54677094 | Msa0648210:intron | 35.0% | |
| ACCACAAATAGCATATATGC+CGG | + | chr4_3:54677118-54677137 | Msa0648210:intron | 35.0% | |
| GTGATGTCTCTAATTGAATC+CGG | - | chr4_3:54677140-54677159 | None:intergenic | 35.0% | |
| CTGGAGTGAAAGTTAAAGTA+TGG | + | chr4_3:54677340-54677359 | Msa0648210:intron | 35.0% | |
| GAGTGAAAGTTAAAGTATGG+TGG | + | chr4_3:54677343-54677362 | Msa0648210:intron | 35.0% | |
| !! | TTTCCACTTTTACTAGCAGA+AGG | + | chr4_3:54677386-54677405 | Msa0648210:intron | 35.0% |
| AATCCTTCTGCTAGTAAAAG+TGG | - | chr4_3:54677392-54677411 | None:intergenic | 35.0% | |
| ! | TCATGGTGTTTTATGACCAT+TGG | + | chr4_3:54677415-54677434 | Msa0648210:intron | 35.0% |
| ! | GTAGCTTTTATCTCAACCAA+TGG | - | chr4_3:54677434-54677453 | None:intergenic | 35.0% |
| CATTCAAATGCACGTCAAAA+CGG | - | chr4_3:54677478-54677497 | None:intergenic | 35.0% | |
| CAATGAGTACTATCCACAAA+TGG | - | chr4_3:54677565-54677584 | None:intergenic | 35.0% | |
| TAATCTCTTTCCAGATCACA+CGG | + | chr4_3:54677774-54677793 | Msa0648210:CDS | 35.0% | |
| TAACAGAGGAGCAACTTTAA+AGG | - | chr4_3:54677927-54677946 | None:intergenic | 35.0% | |
| GATGCTGCATAATACCTATA+TGG | + | chr4_3:54677996-54678015 | Msa0648210:CDS | 35.0% | |
| ! | AAGGTGACCGAATTTTTACT+AGG | - | chr4_3:54678149-54678168 | None:intergenic | 35.0% |
| ! | GATTTTACCAAATCGGTAGA+GGG | - | chr4_3:54678179-54678198 | None:intergenic | 35.0% |
| ! | TGATTTTACCAAATCGGTAG+AGG | - | chr4_3:54678180-54678199 | None:intergenic | 35.0% |
| CAAGCAATCAAAAACAGACT+AGG | + | chr4_3:54678553-54678572 | Msa0648210:three_prime_UTR | 35.0% | |
| CAATCAAAAACAGACTAGGA+AGG | + | chr4_3:54678557-54678576 | Msa0648210:three_prime_UTR | 35.0% | |
| ! | TCCAATGTGAATTTGTTTCC+GGG | + | chr4_3:54678633-54678652 | Msa0648210:three_prime_UTR | 35.0% |
| GCTAATGCATGGCAATTAAA+AGG | - | chr4_3:54678788-54678807 | None:intergenic | 35.0% | |
| GATTGTTAAGTTTCACTCGA+AGG | + | chr4_3:54678920-54678939 | Msa0648210:three_prime_UTR | 35.0% | |
| TTAACTGGAACTTTCGTCCA+AGG | - | chr4_3:54675456-54675475 | None:intergenic | 40.0% | |
| CAGTAATCCTGATGAAGTTG+TGG | + | chr4_3:54675587-54675606 | Msa0648210:CDS | 40.0% | |
| TTTAGTGCCACAACTTCATC+AGG | - | chr4_3:54675597-54675616 | None:intergenic | 40.0% | |
| TGATGAAGTTGTGGCACTAA+AGG | + | chr4_3:54675596-54675615 | Msa0648210:CDS | 40.0% | |
| TACAAAAACCAGCTTTCCCT+TGG | + | chr4_3:54675705-54675724 | Msa0648210:CDS | 40.0% | |
| ACAAAAACCAGCTTTCCCTT+GGG | + | chr4_3:54675706-54675725 | Msa0648210:CDS | 40.0% | |
| CGATACATGTAAAACTCCCA+AGG | - | chr4_3:54675725-54675744 | None:intergenic | 40.0% | |
| GGATGTCATCAACTCATATG+TGG | + | chr4_3:54676081-54676100 | Msa0648210:intron | 40.0% | |
| !! | CATGATGTTGGCTTGATTCA+TGG | + | chr4_3:54676178-54676197 | Msa0648210:CDS | 40.0% |
| ! | AGATTCGAGTATTGCTGTAC+AGG | + | chr4_3:54676582-54676601 | Msa0648210:intron | 40.0% |
| ! | GATTCGAGTATTGCTGTACA+GGG | + | chr4_3:54676583-54676602 | Msa0648210:intron | 40.0% |
| ! | ATTCGAGTATTGCTGTACAG+GGG | + | chr4_3:54676584-54676603 | Msa0648210:intron | 40.0% |
| AGATCTTGATGTATTCGGAC+AGG | - | chr4_3:54676615-54676634 | None:intergenic | 40.0% | |
| CCATTCTCTCTTTCTATGAG+TGG | - | chr4_3:54676689-54676708 | None:intergenic | 40.0% | |
| CCACTCATAGAAAGAGAGAA+TGG | + | chr4_3:54676686-54676705 | Msa0648210:intron | 40.0% | |
| AGAGAGAATGGAATTTCCAG+TGG | + | chr4_3:54676698-54676717 | Msa0648210:intron | 40.0% | |
| GAGAGAATGGAATTTCCAGT+GGG | + | chr4_3:54676699-54676718 | Msa0648210:intron | 40.0% | |
| TACACTTTCAGGGACCAAAA+TGG | - | chr4_3:54676732-54676751 | None:intergenic | 40.0% | |
| ! | TGTCACTTATGTCCGAAACT+GGG | + | chr4_3:54676758-54676777 | Msa0648210:intron | 40.0% |
| TTGGGTTTATAGCCCAGTTT+CGG | - | chr4_3:54676773-54676792 | None:intergenic | 40.0% | |
| ! | TCAACGTAAGAAGTTGGTTG+TGG | - | chr4_3:54677006-54677025 | None:intergenic | 40.0% |
| GTAGACACAATTATGCCACA+TGG | - | chr4_3:54677093-54677112 | None:intergenic | 40.0% | |
| ! | TCCGGCATATATGCTATTTG+TGG | - | chr4_3:54677122-54677141 | None:intergenic | 40.0% |
| !!! | GCTGCACTAGTTTTGTAAGA+GGG | - | chr4_3:54677196-54677215 | None:intergenic | 40.0% |
| !!! | TGCTGCACTAGTTTTGTAAG+AGG | - | chr4_3:54677197-54677216 | None:intergenic | 40.0% |
| !! | CTTCAAAAGCATCTACTGAG+AGG | - | chr4_3:54677301-54677320 | None:intergenic | 40.0% |
| CTAGCAGAAGGATTTACTCA+TGG | + | chr4_3:54677398-54677417 | Msa0648210:intron | 40.0% | |
| ! | GCTTAGATGATTGCCATTTG+TGG | + | chr4_3:54677549-54677568 | Msa0648210:intron | 40.0% |
| TCCAGATCACACGGTATTTA+AGG | + | chr4_3:54677783-54677802 | Msa0648210:CDS | 40.0% | |
| CCAGATCACACGGTATTTAA+GGG | + | chr4_3:54677784-54677803 | Msa0648210:CDS | 40.0% | |
| CGGTATTTAAGGGAGATTGT+AGG | + | chr4_3:54677794-54677813 | Msa0648210:CDS | 40.0% | |
| ! | TTTTCGATGCATTGAGATGC+AGG | + | chr4_3:54677825-54677844 | Msa0648210:CDS | 40.0% |
| TGACTCACCTGAAATTTCCA+CGG | - | chr4_3:54677859-54677878 | None:intergenic | 40.0% | |
| CTGTTGACAAGTGATAACAG+AGG | - | chr4_3:54677941-54677960 | None:intergenic | 40.0% | |
| CTCTGTTATCACTTGTCAAC+AGG | + | chr4_3:54677939-54677958 | Msa0648210:intron | 40.0% | |
| TTCCCAGACTACCCTTTAAA+CGG | + | chr4_3:54678061-54678080 | Msa0648210:CDS | 40.0% | |
| TACCGTTTAAAGGGTAGTCT+GGG | - | chr4_3:54678066-54678085 | None:intergenic | 40.0% | |
| ATACCGTTTAAAGGGTAGTC+TGG | - | chr4_3:54678067-54678086 | None:intergenic | 40.0% | |
| GGGACCTCCTAGTAAAAATT+CGG | + | chr4_3:54678139-54678158 | Msa0648210:intron | 40.0% | |
| ! | GTGACCGAATTTTTACTAGG+AGG | - | chr4_3:54678146-54678165 | None:intergenic | 40.0% |
| AAGATGCTTAATGACTACCC+TGG | + | chr4_3:54678325-54678344 | Msa0648210:CDS | 40.0% | |
| GCAACAACTTCCTATCATCA+TGG | - | chr4_3:54678351-54678370 | None:intergenic | 40.0% | |
| TGATGATAGGAAGTTGTTGC+AGG | + | chr4_3:54678351-54678370 | Msa0648210:CDS | 40.0% | |
| ! | AGGAGTATGTGATGGAAAAC+AGG | - | chr4_3:54678594-54678613 | None:intergenic | 40.0% |
| CATCACATACTCCTTAGTCA+CGG | + | chr4_3:54678600-54678619 | Msa0648210:three_prime_UTR | 40.0% | |
| TCCCGGAAACAAATTCACAT+TGG | - | chr4_3:54678637-54678656 | None:intergenic | 40.0% | |
| CATCTATAGAGGCTAATGCA+TGG | - | chr4_3:54678799-54678818 | None:intergenic | 40.0% | |
| ! | GCTCTTGTTTGTCCTTGTCA+TGG | + | chr4_3:54675482-54675501 | Msa0648210:CDS | 45.0% |
| AGTTGTGGCACTAAAGGTGA+TGG | + | chr4_3:54675602-54675621 | Msa0648210:intron | 45.0% | |
| TAAAACTCCCAAGGGAAAGC+TGG | - | chr4_3:54675716-54675735 | None:intergenic | 45.0% | |
| ! | TTTAGCTCATGGGACACTAC+AGG | + | chr4_3:54675979-54675998 | Msa0648210:CDS | 45.0% |
| ! | TTCGAGTATTGCTGTACAGG+GGG | + | chr4_3:54676585-54676604 | Msa0648210:intron | 45.0% |
| CAAAATGGTGGTTTACCCAC+TGG | - | chr4_3:54676717-54676736 | None:intergenic | 45.0% | |
| ! | CAGTGGGTAAACCACCATTT+TGG | + | chr4_3:54676715-54676734 | Msa0648210:intron | 45.0% |
| ACTTTCAGGGACCAAAATGG+TGG | - | chr4_3:54676729-54676748 | None:intergenic | 45.0% | |
| GACAGCATCGTACACTTTCA+GGG | - | chr4_3:54676742-54676761 | None:intergenic | 45.0% | |
| TGACAGCATCGTACACTTTC+AGG | - | chr4_3:54676743-54676762 | None:intergenic | 45.0% | |
| ! | CTGTCACTTATGTCCGAAAC+TGG | + | chr4_3:54676757-54676776 | Msa0648210:intron | 45.0% |
| ! | ACTGTAGTGTGCTGTCACTT+TGG | - | chr4_3:54676945-54676964 | None:intergenic | 45.0% |
| TGACAGCACACTACAGTTTC+AGG | + | chr4_3:54676948-54676967 | Msa0648210:intron | 45.0% | |
| CTAAGAACCCATCTTCTGTG+AGG | - | chr4_3:54677611-54677630 | None:intergenic | 45.0% | |
| CCCTTAAATACCGTGTGATC+TGG | - | chr4_3:54677787-54677806 | None:intergenic | 45.0% | |
| AAGGGAGATTGTAGGACTTC+TGG | + | chr4_3:54677802-54677821 | Msa0648210:CDS | 45.0% | |
| TGTCAACAGGCAGATGCATA+TGG | + | chr4_3:54677952-54677971 | Msa0648210:intron | 45.0% | |
| TCGTATGAACAACACCGCAA+AGG | - | chr4_3:54677978-54677997 | None:intergenic | 45.0% | |
| ATCGGTAGAGGGAGACTAAA+AGG | - | chr4_3:54678168-54678187 | None:intergenic | 45.0% | |
| ! | TTAGTCTCCCTCTACCGATT+TGG | + | chr4_3:54678169-54678188 | Msa0648210:intron | 45.0% |
| ACTTCCTATCATCATGGCCA+GGG | - | chr4_3:54678345-54678364 | None:intergenic | 45.0% | |
| AACTTCCTATCATCATGGCC+AGG | - | chr4_3:54678346-54678365 | None:intergenic | 45.0% | |
| GGAATTGAAGAAGTCCTTCC+AGG | + | chr4_3:54678372-54678391 | Msa0648210:CDS | 45.0% | |
| AGAGCTGATATAGTCCTGGA+AGG | - | chr4_3:54678389-54678408 | None:intergenic | 45.0% | |
| GATCAGAGCTGATATAGTCC+TGG | - | chr4_3:54678393-54678412 | None:intergenic | 45.0% | |
| ATAGACAGCTACAGCAGAAG+TGG | - | chr4_3:54678502-54678521 | None:intergenic | 45.0% | |
| ! | CGTGACTAAGGAGTATGTGA+TGG | - | chr4_3:54678602-54678621 | None:intergenic | 45.0% |
| ! | AAGAGTCTTGTCCGTGACTA+AGG | - | chr4_3:54678614-54678633 | None:intergenic | 45.0% |
| GTCCTTGTCATGGCATCCAA+AGG | + | chr4_3:54675492-54675511 | Msa0648210:CDS | 50.0% | |
| CACCTTTGGATGCCATGACA+AGG | - | chr4_3:54675497-54675516 | None:intergenic | 50.0% | |
| CTTGTCATGGCATCCAAAGG+TGG | + | chr4_3:54675495-54675514 | Msa0648210:CDS | 50.0% | |
| TACCATATCAAGGGCTGTGC+TGG | + | chr4_3:54675525-54675544 | Msa0648210:CDS | 50.0% | |
| ! | TGTGGCACTAAAGGTGATGG+CGG | + | chr4_3:54675605-54675624 | Msa0648210:intron | 50.0% |
| AGGGGTAACCTCACAGAAGA+TGG | + | chr4_3:54677600-54677619 | Msa0648210:intron | 50.0% | |
| GGGGTAACCTCACAGAAGAT+GGG | + | chr4_3:54677601-54677620 | Msa0648210:intron | 50.0% | |
| ! | GATGGGTTCTTAGACCGAAG+CGG | + | chr4_3:54677618-54677637 | Msa0648210:CDS | 50.0% |
| TCTTAGACCGAAGCGGTTGT+TGG | + | chr4_3:54677625-54677644 | Msa0648210:CDS | 50.0% | |
| GATCATGCCAACAACCGCTT+CGG | - | chr4_3:54677635-54677654 | None:intergenic | 50.0% | |
| AAGCGGTTGTTGGCATGATC+AGG | + | chr4_3:54677635-54677654 | Msa0648210:CDS | 50.0% | |
| ! | AGGGTCTCTGTCTTGTTGAC+TGG | + | chr4_3:54677734-54677753 | Msa0648210:intron | 50.0% |
| ! | GGGTCTCTGTCTTGTTGACT+GGG | + | chr4_3:54677735-54677754 | Msa0648210:intron | 50.0% |
| ! | GGTCTCTGTCTTGTTGACTG+GGG | + | chr4_3:54677736-54677755 | Msa0648210:CDS | 50.0% |
| ! | TGTCTTGTTGACTGGGGAAG+AGG | + | chr4_3:54677742-54677761 | Msa0648210:CDS | 50.0% |
| ! | GTCTTGTTGACTGGGGAAGA+GGG | + | chr4_3:54677743-54677762 | Msa0648210:CDS | 50.0% |
| TCGATGCATTGAGATGCAGG+AGG | + | chr4_3:54677828-54677847 | Msa0648210:CDS | 50.0% | |
| GCATTGAGATGCAGGAGGAT+AGG | + | chr4_3:54677833-54677852 | Msa0648210:CDS | 50.0% | |
| GGATAGGCCGTGGAAATTTC+AGG | + | chr4_3:54677849-54677868 | Msa0648210:CDS | 50.0% | |
| GCAGATGCATATGGCCTTTG+CGG | + | chr4_3:54677961-54677980 | Msa0648210:CDS | 50.0% | |
| ACAAAAGGAAGGGTCTGCTG+TGG | - | chr4_3:54678220-54678239 | None:intergenic | 50.0% | |
| GTTACTGGAACGTCGAGCTA+TGG | + | chr4_3:54678287-54678306 | Msa0648210:intron | 50.0% | |
| ACTACCCTGGCCATGATGAT+AGG | + | chr4_3:54678338-54678357 | Msa0648210:CDS | 50.0% | |
| AGGAGTTACTCGCGAAGCAA+AGG | + | chr4_3:54678434-54678453 | Msa0648210:CDS | 50.0% | |
| GGAGTTACTCGCGAAGCAAA+GGG | + | chr4_3:54678435-54678454 | Msa0648210:CDS | 50.0% | |
| GTCCAGCACAGCCCTTGATA+TGG | - | chr4_3:54675530-54675549 | None:intergenic | 55.0% | |
| TATCAAGGGCTGTGCTGGAC+AGG | + | chr4_3:54675530-54675549 | Msa0648210:CDS | 55.0% | |
| ATCAAGGGCTGTGCTGGACA+GGG | + | chr4_3:54675531-54675550 | Msa0648210:CDS | 55.0% | |
| AGATGCAGGAGGATAGGCCG+TGG | + | chr4_3:54677839-54677858 | Msa0648210:CDS | 60.0% | |
| ACACTTGCATGTGCGCGTCC+CGG | - | chr4_3:54678654-54678673 | None:intergenic | 60.0% | |
| AAGGGCTGTGCTGGACAGGG+AGG | + | chr4_3:54675534-54675553 | Msa0648210:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 54675447 | 54678970 | 54675447 | ID=Msa0648210;Name=Msa0648210 |
| chr4_3 | mRNA | 54675447 | 54678970 | 54675447 | ID=Msa0648210-mRNA-1;Parent=Msa0648210;Name=Msa0648210-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|1|0.87|1|1|1|8|493|330 |
| chr4_3 | exon | 54675447 | 54675617 | 54675447 | ID=Msa0648210-mRNA-1:exon:13832;Parent=Msa0648210-mRNA-1 |
| chr4_3 | exon | 54675704 | 54675775 | 54675704 | ID=Msa0648210-mRNA-1:exon:13833;Parent=Msa0648210-mRNA-1 |
| chr4_3 | exon | 54675911 | 54676000 | 54675911 | ID=Msa0648210-mRNA-1:exon:13834;Parent=Msa0648210-mRNA-1 |
| chr4_3 | exon | 54676082 | 54676239 | 54676082 | ID=Msa0648210-mRNA-1:exon:13835;Parent=Msa0648210-mRNA-1 |
| chr4_3 | exon | 54677602 | 54677656 | 54677602 | ID=Msa0648210-mRNA-1:exon:13836;Parent=Msa0648210-mRNA-1 |
| chr4_3 | exon | 54677736 | 54677870 | 54677736 | ID=Msa0648210-mRNA-1:exon:13837;Parent=Msa0648210-mRNA-1 |
| chr4_3 | exon | 54677961 | 54678082 | 54677961 | ID=Msa0648210-mRNA-1:exon:13838;Parent=Msa0648210-mRNA-1 |
| chr4_3 | exon | 54678288 | 54678970 | 54678288 | ID=Msa0648210-mRNA-1:exon:13839;Parent=Msa0648210-mRNA-1 |
| chr4_3 | CDS | 54675447 | 54675617 | 54675447 | ID=Msa0648210-mRNA-1:cds;Parent=Msa0648210-mRNA-1 |
| chr4_3 | CDS | 54675704 | 54675775 | 54675704 | ID=Msa0648210-mRNA-1:cds;Parent=Msa0648210-mRNA-1 |
| chr4_3 | CDS | 54675911 | 54676000 | 54675911 | ID=Msa0648210-mRNA-1:cds;Parent=Msa0648210-mRNA-1 |
| chr4_3 | CDS | 54676082 | 54676239 | 54676082 | ID=Msa0648210-mRNA-1:cds;Parent=Msa0648210-mRNA-1 |
| chr4_3 | CDS | 54677602 | 54677656 | 54677602 | ID=Msa0648210-mRNA-1:cds;Parent=Msa0648210-mRNA-1 |
| chr4_3 | CDS | 54677736 | 54677870 | 54677736 | ID=Msa0648210-mRNA-1:cds;Parent=Msa0648210-mRNA-1 |
| chr4_3 | CDS | 54677961 | 54678082 | 54677961 | ID=Msa0648210-mRNA-1:cds;Parent=Msa0648210-mRNA-1 |
| chr4_3 | CDS | 54678288 | 54678477 | 54678288 | ID=Msa0648210-mRNA-1:cds;Parent=Msa0648210-mRNA-1 |
| chr4_3 | three_prime_UTR | 54678478 | 54678970 | 54678478 | ID=Msa0648210-mRNA-1:three_prime_utr;Parent=Msa0648210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
