AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0649560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0649560 MtrunA17_Chr2g0284461 91.964 112 9 0 167 278 609 720 5.02e-62 207
Msa0649560 MtrunA17_Chr3g0139641 76.000 125 22 2 148 264 8 132 1.37e-54 173
Msa0649560 MtrunA17_Chr8g0386391 84.848 66 10 0 1 66 1 66 3.35e-33 115
Msa0649560 MtrunA17_Chr5g0447201 89.286 56 3 1 110 165 134 186 1.48e-26 108
Msa0649560 MtrunA17_Chr7g0235141 90.566 53 5 0 166 218 3 55 4.63e-26 97.4
Msa0649560 MtrunA17_Chr5g0397801 47.059 136 31 3 1 108 1 123 1.07e-25 102
Msa0649560 MtrunA17_Chr1g0173521 59.322 59 21 1 110 168 179 234 8.47e-15 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0649560 AT1G29340.1 66.667 111 32 2 167 277 621 726 5.98e-38 142
Msa0649560 AT4G20330.1 43.243 148 52 2 1 122 1 142 7.14e-23 95.5
Msa0649560 AT1G55740.1 59.322 59 21 1 110 168 127 182 1.38e-16 80.1
Msa0649560 AT4G21010.1 41.985 131 46 3 1 105 1 127 1.87e-14 72.0
Msa0649560 AT3G57520.2 55.932 59 23 1 110 168 127 182 1.53e-12 67.8
Msa0649560 AT3G57520.3 55.932 59 23 1 110 168 127 182 1.59e-12 67.8
Msa0649560 AT3G57520.1 55.932 59 23 1 110 168 127 182 1.68e-12 67.8

Find 71 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGACTCATTTGGTGTTTAT+TGG 0.178805 4_3:+56241123 Msa0649560:CDS
GGACTCATTTGGTGTTTATT+GGG 0.187135 4_3:+56241124 Msa0649560:CDS
TCTCTACATTATGGTGTATT+AGG 0.247651 4_3:+56241688 Msa0649560:CDS
GCAGCCACCACCGGAGTATT+AGG 0.268237 4_3:-56240009 None:intergenic
CTTCAAACCCTACTATTTAC+CGG 0.331149 4_3:+56241601 Msa0649560:CDS
CGCTCCATCTGAGCACCAAC+GGG 0.368841 4_3:-56240126 None:intergenic
CATTTGGTGTTTATTGGGGC+TGG 0.372723 4_3:+56241129 Msa0649560:CDS
TGCCCGTCGTATGCTACATT+TGG 0.383597 4_3:-56240737 None:intergenic
GCTTTGTCCCGGTAAATAGT+AGG 0.385439 4_3:-56241609 None:intergenic
TGCAATTGAAAGGGCGGTTA+AGG 0.401505 4_3:+56241558 Msa0649560:CDS
GCATTTGTTATAACTTCATA+AGG 0.409589 4_3:-56241159 None:intergenic
GAAAATGCATCTCTACATTA+TGG 0.412312 4_3:+56241679 Msa0649560:CDS
GTATTATACCACTATATTAC+AGG 0.417054 4_3:-56241802 None:intergenic
CTAGCAATTCAGCTCAAACT+AGG 0.421052 4_3:+56241728 Msa0649560:CDS
GGAATTTGATGGGACTCATT+TGG 0.432327 4_3:+56241113 Msa0649560:CDS
ATGCGTTGTGGAACACCAAC+GGG 0.433508 4_3:+56241481 Msa0649560:CDS
GTTAAGGCACCAACTATTGC+CGG 0.433899 4_3:+56241574 Msa0649560:CDS
GCTGCAAATGCTTCATCAAA+TGG 0.435679 4_3:+56240027 Msa0649560:CDS
TAGTAGGGTTTGAAGTAATC+CGG 0.457922 4_3:-56241593 None:intergenic
TTGTGGCGGAAAAGCTAGAT+AGG 0.459328 4_3:+56239914 Msa0649560:CDS
AAGCACATTTGAAATGTTTG+TGG 0.469159 4_3:+56239897 None:intergenic
CCATCAAATTCCTCCACATC+AGG 0.481977 4_3:-56241102 None:intergenic
AGGGATTCAAGCTTTGCTGC+AGG 0.485529 4_3:+56241748 Msa0649560:CDS
AGAATTGCGTCGAGCAAAGT+TGG 0.491272 4_3:+56239976 Msa0649560:CDS
TTTGTTCAGGACTATTGAGT+CGG 0.492898 4_3:+56241388 Msa0649560:intron
CAGCATTGCTCGAGTTATGC+CGG 0.494015 4_3:+56241521 Msa0649560:CDS
CTTTGTCCCGGTAAATAGTA+GGG 0.497495 4_3:-56241608 None:intergenic
TTCAAACCCTACTATTTACC+GGG 0.497622 4_3:+56241602 Msa0649560:CDS
CCTGATGTGGAGGAATTTGA+TGG 0.498094 4_3:+56241102 Msa0649560:CDS
TGAAGTAATCCGGCAATAGT+TGG 0.499205 4_3:-56241583 None:intergenic
TTGTTCAGGACTATTGAGTC+GGG 0.501991 4_3:+56241389 Msa0649560:intron
TCTCTGTACCTGTAATATAG+TGG 0.503843 4_3:+56241794 Msa0649560:CDS
ATTGAGATTTGTGTTGAAAG+TGG 0.506532 4_3:+56240917 Msa0649560:CDS
GACTCATTTGGTGTTTATTG+GGG 0.511611 4_3:+56241125 Msa0649560:CDS
GAGGTTCAGCTGCAATTGAA+AGG 0.514449 4_3:+56241548 Msa0649560:CDS
GGATTCAAGCTTTGCTGCAG+GGG 0.516848 4_3:+56241750 Msa0649560:CDS
GGGATTCAAGCTTTGCTGCA+GGG 0.523093 4_3:+56241749 Msa0649560:CDS
TTGTGGAACACCAACGGGTA+AGG 0.525498 4_3:+56241486 Msa0649560:CDS
GAAGCATTTGCAGCCACCAC+CGG 0.530483 4_3:-56240018 None:intergenic
ACGTCTAGATCGCTTTGTCC+CGG 0.534083 4_3:-56241620 None:intergenic
ATGTAGCATACGACGGGCAA+CGG 0.534179 4_3:+56240741 Msa0649560:CDS
TAGCAATTCAGCTCAAACTA+GGG 0.535704 4_3:+56241729 Msa0649560:CDS
CGGGCAACGGTTCTCTTACA+AGG 0.541030 4_3:+56240754 Msa0649560:CDS
CACATTTGAAATGTTTGTGG+CGG 0.549189 4_3:+56239900 None:intergenic
CATTATGGTGTATTAGGTGT+AGG 0.552166 4_3:+56241694 Msa0649560:CDS
AACCAAATGTAGCATACGAC+GGG 0.558104 4_3:+56240735 Msa0649560:CDS
ACGCTCCATCTGAGCACCAA+CGG 0.570793 4_3:-56240127 None:intergenic
ACTGCATTCTCCTTACCCGT+TGG 0.580022 4_3:-56241496 None:intergenic
AAAACCTAATACTCCGGTGG+TGG 0.582600 4_3:+56240005 Msa0649560:CDS
TGTCAAACTCACTTGATCAA+AGG 0.583358 4_3:-56241186 None:intergenic
AGGTTCAGCTGCAATTGAAA+GGG 0.584279 4_3:+56241549 Msa0649560:CDS
CTCGAGTTATGCCGGAGTGG+AGG 0.588750 4_3:+56241529 Msa0649560:CDS
TAGCAGAAAACCTAATACTC+CGG 0.589094 4_3:+56239999 Msa0649560:CDS
GATGCGTTGTGGAACACCAA+CGG 0.591442 4_3:+56241480 Msa0649560:CDS
AAGATGTTTCTGAGAGTCTG+AGG 0.594174 4_3:+56240708 Msa0649560:CDS
ATTAGGTGTAGGCTATGCAT+TGG 0.596170 4_3:+56241705 Msa0649560:CDS
TTCAGCTGCAATTGAAAGGG+CGG 0.609680 4_3:+56241552 Msa0649560:CDS
GATTGTAGGATGTCCTGATG+TGG 0.620075 4_3:+56241089 Msa0649560:intron
CTATATTACAGGTACAGAGA+TGG 0.627725 4_3:-56241791 None:intergenic
ACAGGTACAGAGATGGACAT+TGG 0.635671 4_3:-56241784 None:intergenic
CTGATGTGGAGGAATTTGAT+GGG 0.644921 4_3:+56241103 Msa0649560:CDS
AAACACTATAGCAAGTGAAG+CGG 0.655689 4_3:-56241647 None:intergenic
AAACCAAATGTAGCATACGA+CGG 0.667218 4_3:+56240734 Msa0649560:CDS
AATTCTCAAATGATACTGAG+AGG 0.667400 4_3:+56240073 Msa0649560:CDS
TTGCAGCTGAACCTCCACTC+CGG 0.668193 4_3:-56241540 None:intergenic
CTCCATCTGAGCACCAACGG+GGG 0.668583 4_3:-56240124 None:intergenic
TTGCTCGAGTTATGCCGGAG+TGG 0.674659 4_3:+56241526 Msa0649560:CDS
TTGATAGGAATGATGCGTTG+TGG 0.684688 4_3:+56241469 Msa0649560:intron
TGTAGGATGTCCTGATGTGG+AGG 0.686980 4_3:+56241092 Msa0649560:intron
GCTCCATCTGAGCACCAACG+GGG 0.691668 4_3:-56240125 None:intergenic
CAGAAAACCTAATACTCCGG+TGG 0.697637 4_3:+56240002 Msa0649560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAATTATTGTTAGTGAC+TGG + chr4_3:56240214-56240233 Msa0649560:intron 20.0%
!!! TATTAGTTTCAATTTGCAAT+TGG - chr4_3:56240381-56240400 None:intergenic 20.0%
!! CAAATTGAAACTAATATGTT+TGG + chr4_3:56240385-56240404 Msa0649560:intron 20.0%
!! AATGAATTTCTCAATATGTT+TGG - chr4_3:56240494-56240513 None:intergenic 20.0%
!! TGAACAAAGAAAAAAATTGA+TGG - chr4_3:56241376-56241395 None:intergenic 20.0%
!!! ATCAATTTTTTTCTTTGTTC+AGG + chr4_3:56241375-56241394 Msa0649560:intron 20.0%
!!! TTTTAATTATTGTTAGTGAC+TGG + chr4_3:56240214-56240233 Msa0649560:intron 20.0%
!!! TATTAGTTTCAATTTGCAAT+TGG - chr4_3:56240381-56240400 None:intergenic 20.0%
!! CAAATTGAAACTAATATGTT+TGG + chr4_3:56240385-56240404 Msa0649560:intron 20.0%
!! AATGAATTTCTCAATATGTT+TGG - chr4_3:56240494-56240513 None:intergenic 20.0%
!! TGAACAAAGAAAAAAATTGA+TGG - chr4_3:56241376-56241395 None:intergenic 20.0%
!!! ATCAATTTTTTTCTTTGTTC+AGG + chr4_3:56241375-56241394 Msa0649560:intron 20.0%
! AATGGAAGAAATTCAAAAAC+TGG + chr4_3:56240045-56240064 Msa0649560:CDS 25.0%
!! TCGTTAAAACCATATTGATT+TGG + chr4_3:56240603-56240622 Msa0649560:intron 25.0%
!! ATGAAGAAGTTATTTGCTAA+AGG - chr4_3:56240827-56240846 None:intergenic 25.0%
!!! GCATTTGTTATAACTTCATA+AGG - chr4_3:56241162-56241181 None:intergenic 25.0%
!! TTCAGAAGAGTATATTGAAA+AGG - chr4_3:56241224-56241243 None:intergenic 25.0%
! AAAGTTTATCACTGCAAATT+AGG - chr4_3:56241320-56241339 None:intergenic 25.0%
!!! ATCTTTTTGTTTGCTTTGTT+TGG + chr4_3:56241445-56241464 Msa0649560:intron 25.0%
! AATGGAAGAAATTCAAAAAC+TGG + chr4_3:56240045-56240064 Msa0649560:CDS 25.0%
!! TCGTTAAAACCATATTGATT+TGG + chr4_3:56240603-56240622 Msa0649560:intron 25.0%
!! ATGAAGAAGTTATTTGCTAA+AGG - chr4_3:56240827-56240846 None:intergenic 25.0%
!!! GCATTTGTTATAACTTCATA+AGG - chr4_3:56241162-56241181 None:intergenic 25.0%
!! TTCAGAAGAGTATATTGAAA+AGG - chr4_3:56241224-56241243 None:intergenic 25.0%
! AAAGTTTATCACTGCAAATT+AGG - chr4_3:56241320-56241339 None:intergenic 25.0%
!!! ATCTTTTTGTTTGCTTTGTT+TGG + chr4_3:56241445-56241464 Msa0649560:intron 25.0%
AATTCTCAAATGATACTGAG+AGG + chr4_3:56240073-56240092 Msa0649560:CDS 30.0%
TGTTATTGATCTATTGCTTG+AGG + chr4_3:56240149-56240168 Msa0649560:intron 30.0%
! TCTATTGCTTGAGGTAATTT+TGG + chr4_3:56240158-56240177 Msa0649560:intron 30.0%
TAATTATTGTTAGTGACTGG+TGG + chr4_3:56240217-56240236 Msa0649560:intron 30.0%
! TGGTGACTTTTAAGCTATAA+TGG - chr4_3:56240361-56240380 None:intergenic 30.0%
!! AAACTAATATGTTTGGCTTG+TGG + chr4_3:56240392-56240411 Msa0649560:intron 30.0%
ATTTCTCAATATGTTTGGCT+GGG - chr4_3:56240489-56240508 None:intergenic 30.0%
AATTTCTCAATATGTTTGGC+TGG - chr4_3:56240490-56240509 None:intergenic 30.0%
AACGAATCAATTCCTAATTG+TGG - chr4_3:56240588-56240607 None:intergenic 30.0%
!!! ACCATATTGATTTGGTGTTT+TGG + chr4_3:56240611-56240630 Msa0649560:intron 30.0%
ACCAAAACACCAAATCAATA+TGG - chr4_3:56240615-56240634 None:intergenic 30.0%
CATACTTCATTTATTTGCTC+TGG - chr4_3:56240666-56240685 None:intergenic 30.0%
AAGTATGCTATGTTGATATG+AGG + chr4_3:56240679-56240698 Msa0649560:intron 30.0%
CTCTTACAAGGTAATCTTTA+CGG + chr4_3:56240766-56240785 Msa0649560:intron 30.0%
TCTTACAAGGTAATCTTTAC+GGG + chr4_3:56240767-56240786 Msa0649560:intron 30.0%
ATTGAGATTTGTGTTGAAAG+TGG + chr4_3:56240917-56240936 Msa0649560:CDS 30.0%
! TACATAACACACATTAGTCT+CGG - chr4_3:56241068-56241087 None:intergenic 30.0%
TGTGTGTTATGTATGATTGT+AGG + chr4_3:56241075-56241094 Msa0649560:intron 30.0%
!! TTTGCTTTGTTTGGATTGAT+AGG + chr4_3:56241454-56241473 Msa0649560:intron 30.0%
GAAAATGCATCTCTACATTA+TGG + chr4_3:56241679-56241698 Msa0649560:CDS 30.0%
TCTCTACATTATGGTGTATT+AGG + chr4_3:56241688-56241707 Msa0649560:CDS 30.0%
AATTCTCAAATGATACTGAG+AGG + chr4_3:56240073-56240092 Msa0649560:CDS 30.0%
TGTTATTGATCTATTGCTTG+AGG + chr4_3:56240149-56240168 Msa0649560:intron 30.0%
! TCTATTGCTTGAGGTAATTT+TGG + chr4_3:56240158-56240177 Msa0649560:intron 30.0%
TAATTATTGTTAGTGACTGG+TGG + chr4_3:56240217-56240236 Msa0649560:intron 30.0%
! TGGTGACTTTTAAGCTATAA+TGG - chr4_3:56240361-56240380 None:intergenic 30.0%
!! AAACTAATATGTTTGGCTTG+TGG + chr4_3:56240392-56240411 Msa0649560:intron 30.0%
ATTTCTCAATATGTTTGGCT+GGG - chr4_3:56240489-56240508 None:intergenic 30.0%
AATTTCTCAATATGTTTGGC+TGG - chr4_3:56240490-56240509 None:intergenic 30.0%
AACGAATCAATTCCTAATTG+TGG - chr4_3:56240588-56240607 None:intergenic 30.0%
!!! ACCATATTGATTTGGTGTTT+TGG + chr4_3:56240611-56240630 Msa0649560:intron 30.0%
ACCAAAACACCAAATCAATA+TGG - chr4_3:56240615-56240634 None:intergenic 30.0%
CATACTTCATTTATTTGCTC+TGG - chr4_3:56240666-56240685 None:intergenic 30.0%
AAGTATGCTATGTTGATATG+AGG + chr4_3:56240679-56240698 Msa0649560:intron 30.0%
CTCTTACAAGGTAATCTTTA+CGG + chr4_3:56240766-56240785 Msa0649560:intron 30.0%
TCTTACAAGGTAATCTTTAC+GGG + chr4_3:56240767-56240786 Msa0649560:intron 30.0%
ATTGAGATTTGTGTTGAAAG+TGG + chr4_3:56240917-56240936 Msa0649560:CDS 30.0%
! TACATAACACACATTAGTCT+CGG - chr4_3:56241068-56241087 None:intergenic 30.0%
TGTGTGTTATGTATGATTGT+AGG + chr4_3:56241075-56241094 Msa0649560:intron 30.0%
!! TTTGCTTTGTTTGGATTGAT+AGG + chr4_3:56241454-56241473 Msa0649560:intron 30.0%
GAAAATGCATCTCTACATTA+TGG + chr4_3:56241679-56241698 Msa0649560:CDS 30.0%
TCTCTACATTATGGTGTATT+AGG + chr4_3:56241688-56241707 Msa0649560:CDS 30.0%
TAGCAGAAAACCTAATACTC+CGG + chr4_3:56239999-56240018 Msa0649560:CDS 35.0%
!! TGATTTTGATGCATGAGATG+AGG + chr4_3:56240251-56240270 Msa0649560:intron 35.0%
!! GATTTTGATGCATGAGATGA+GGG + chr4_3:56240252-56240271 Msa0649560:intron 35.0%
TAACCTCAAACTTAACAGCT+AGG - chr4_3:56240332-56240351 None:intergenic 35.0%
TGAAGCTTCAACAAAATCAC+AGG - chr4_3:56240419-56240438 None:intergenic 35.0%
ACCAATGAAAGTCCACAATT+AGG + chr4_3:56240573-56240592 Msa0649560:intron 35.0%
TCCTAATTGTGGACTTTCAT+TGG - chr4_3:56240577-56240596 None:intergenic 35.0%
AAACCAAATGTAGCATACGA+CGG + chr4_3:56240734-56240753 Msa0649560:CDS 35.0%
! TCTAGCATGTTCTCATTTTC+AGG + chr4_3:56240864-56240883 Msa0649560:intron 35.0%
! CTAGCATGTTCTCATTTTCA+GGG + chr4_3:56240865-56240884 Msa0649560:intron 35.0%
!! GGACTCATTTGGTGTTTATT+GGG + chr4_3:56241124-56241143 Msa0649560:CDS 35.0%
!! GACTCATTTGGTGTTTATTG+GGG + chr4_3:56241125-56241144 Msa0649560:CDS 35.0%
TGTCAAACTCACTTGATCAA+AGG - chr4_3:56241189-56241208 None:intergenic 35.0%
TGTTCCATTAGTGCAGTATT+AGG + chr4_3:56241262-56241281 Msa0649560:intron 35.0%
AAGTCCTAATACTGCACTAA+TGG - chr4_3:56241269-56241288 None:intergenic 35.0%
TTTGTTCAGGACTATTGAGT+CGG + chr4_3:56241388-56241407 Msa0649560:intron 35.0%
! TAGTAGGGTTTGAAGTAATC+CGG - chr4_3:56241596-56241615 None:intergenic 35.0%
CTTCAAACCCTACTATTTAC+CGG + chr4_3:56241601-56241620 Msa0649560:CDS 35.0%
TTCAAACCCTACTATTTACC+GGG + chr4_3:56241602-56241621 Msa0649560:CDS 35.0%
AAACACTATAGCAAGTGAAG+CGG - chr4_3:56241650-56241669 None:intergenic 35.0%
CATTATGGTGTATTAGGTGT+AGG + chr4_3:56241694-56241713 Msa0649560:CDS 35.0%
TAGCAATTCAGCTCAAACTA+GGG + chr4_3:56241729-56241748 Msa0649560:CDS 35.0%
CTATATTACAGGTACAGAGA+TGG - chr4_3:56241794-56241813 None:intergenic 35.0%
TAGCAGAAAACCTAATACTC+CGG + chr4_3:56239999-56240018 Msa0649560:CDS 35.0%
!! TGATTTTGATGCATGAGATG+AGG + chr4_3:56240251-56240270 Msa0649560:intron 35.0%
!! GATTTTGATGCATGAGATGA+GGG + chr4_3:56240252-56240271 Msa0649560:intron 35.0%
TAACCTCAAACTTAACAGCT+AGG - chr4_3:56240332-56240351 None:intergenic 35.0%
TGAAGCTTCAACAAAATCAC+AGG - chr4_3:56240419-56240438 None:intergenic 35.0%
ACCAATGAAAGTCCACAATT+AGG + chr4_3:56240573-56240592 Msa0649560:intron 35.0%
TCCTAATTGTGGACTTTCAT+TGG - chr4_3:56240577-56240596 None:intergenic 35.0%
AAACCAAATGTAGCATACGA+CGG + chr4_3:56240734-56240753 Msa0649560:CDS 35.0%
! TCTAGCATGTTCTCATTTTC+AGG + chr4_3:56240864-56240883 Msa0649560:intron 35.0%
! CTAGCATGTTCTCATTTTCA+GGG + chr4_3:56240865-56240884 Msa0649560:intron 35.0%
!! GGACTCATTTGGTGTTTATT+GGG + chr4_3:56241124-56241143 Msa0649560:CDS 35.0%
!! GACTCATTTGGTGTTTATTG+GGG + chr4_3:56241125-56241144 Msa0649560:CDS 35.0%
TGTCAAACTCACTTGATCAA+AGG - chr4_3:56241189-56241208 None:intergenic 35.0%
TGTTCCATTAGTGCAGTATT+AGG + chr4_3:56241262-56241281 Msa0649560:intron 35.0%
AAGTCCTAATACTGCACTAA+TGG - chr4_3:56241269-56241288 None:intergenic 35.0%
TTTGTTCAGGACTATTGAGT+CGG + chr4_3:56241388-56241407 Msa0649560:intron 35.0%
! TAGTAGGGTTTGAAGTAATC+CGG - chr4_3:56241596-56241615 None:intergenic 35.0%
CTTCAAACCCTACTATTTAC+CGG + chr4_3:56241601-56241620 Msa0649560:CDS 35.0%
TTCAAACCCTACTATTTACC+GGG + chr4_3:56241602-56241621 Msa0649560:CDS 35.0%
AAACACTATAGCAAGTGAAG+CGG - chr4_3:56241650-56241669 None:intergenic 35.0%
CATTATGGTGTATTAGGTGT+AGG + chr4_3:56241694-56241713 Msa0649560:CDS 35.0%
TAGCAATTCAGCTCAAACTA+GGG + chr4_3:56241729-56241748 Msa0649560:CDS 35.0%
CTATATTACAGGTACAGAGA+TGG - chr4_3:56241794-56241813 None:intergenic 35.0%
GCTGCAAATGCTTCATCAAA+TGG + chr4_3:56240027-56240046 Msa0649560:CDS 40.0%
AAGCCTAGCTGTTAAGTTTG+AGG + chr4_3:56240326-56240345 Msa0649560:intron 40.0%
!!! TGGTGTTTTGGTTTGCTGAT+AGG + chr4_3:56240623-56240642 Msa0649560:intron 40.0%
!!! TTTTGGTTTGCTGATAGGCA+CGG + chr4_3:56240628-56240647 Msa0649560:intron 40.0%
! AAGATGTTTCTGAGAGTCTG+AGG + chr4_3:56240708-56240727 Msa0649560:CDS 40.0%
AACCAAATGTAGCATACGAC+GGG + chr4_3:56240735-56240754 Msa0649560:CDS 40.0%
!! ATTTTCAGGGCTGTTCTTCA+GGG + chr4_3:56240878-56240897 Msa0649560:CDS 40.0%
CAATGGTAGAAACAAATCCC+CGG + chr4_3:56241022-56241041 Msa0649560:intron 40.0%
CTGATGTGGAGGAATTTGAT+GGG + chr4_3:56241103-56241122 Msa0649560:CDS 40.0%
GGAATTTGATGGGACTCATT+TGG + chr4_3:56241113-56241132 Msa0649560:CDS 40.0%
!! GGGACTCATTTGGTGTTTAT+TGG + chr4_3:56241123-56241142 Msa0649560:CDS 40.0%
TTGTTCAGGACTATTGAGTC+GGG + chr4_3:56241389-56241408 Msa0649560:intron 40.0%
TTGATAGGAATGATGCGTTG+TGG + chr4_3:56241469-56241488 Msa0649560:intron 40.0%
AGGTTCAGCTGCAATTGAAA+GGG + chr4_3:56241549-56241568 Msa0649560:CDS 40.0%
TGAAGTAATCCGGCAATAGT+TGG - chr4_3:56241586-56241605 None:intergenic 40.0%
CTTTGTCCCGGTAAATAGTA+GGG - chr4_3:56241611-56241630 None:intergenic 40.0%
ATTAGGTGTAGGCTATGCAT+TGG + chr4_3:56241705-56241724 Msa0649560:CDS 40.0%
CTAGCAATTCAGCTCAAACT+AGG + chr4_3:56241728-56241747 Msa0649560:CDS 40.0%
GCTGCAAATGCTTCATCAAA+TGG + chr4_3:56240027-56240046 Msa0649560:CDS 40.0%
AAGCCTAGCTGTTAAGTTTG+AGG + chr4_3:56240326-56240345 Msa0649560:intron 40.0%
!!! TGGTGTTTTGGTTTGCTGAT+AGG + chr4_3:56240623-56240642 Msa0649560:intron 40.0%
!!! TTTTGGTTTGCTGATAGGCA+CGG + chr4_3:56240628-56240647 Msa0649560:intron 40.0%
! AAGATGTTTCTGAGAGTCTG+AGG + chr4_3:56240708-56240727 Msa0649560:CDS 40.0%
AACCAAATGTAGCATACGAC+GGG + chr4_3:56240735-56240754 Msa0649560:CDS 40.0%
!! ATTTTCAGGGCTGTTCTTCA+GGG + chr4_3:56240878-56240897 Msa0649560:CDS 40.0%
CAATGGTAGAAACAAATCCC+CGG + chr4_3:56241022-56241041 Msa0649560:intron 40.0%
CTGATGTGGAGGAATTTGAT+GGG + chr4_3:56241103-56241122 Msa0649560:CDS 40.0%
GGAATTTGATGGGACTCATT+TGG + chr4_3:56241113-56241132 Msa0649560:CDS 40.0%
!! GGGACTCATTTGGTGTTTAT+TGG + chr4_3:56241123-56241142 Msa0649560:CDS 40.0%
TTGTTCAGGACTATTGAGTC+GGG + chr4_3:56241389-56241408 Msa0649560:intron 40.0%
TTGATAGGAATGATGCGTTG+TGG + chr4_3:56241469-56241488 Msa0649560:intron 40.0%
AGGTTCAGCTGCAATTGAAA+GGG + chr4_3:56241549-56241568 Msa0649560:CDS 40.0%
TGAAGTAATCCGGCAATAGT+TGG - chr4_3:56241586-56241605 None:intergenic 40.0%
CTTTGTCCCGGTAAATAGTA+GGG - chr4_3:56241611-56241630 None:intergenic 40.0%
ATTAGGTGTAGGCTATGCAT+TGG + chr4_3:56241705-56241724 Msa0649560:CDS 40.0%
CTAGCAATTCAGCTCAAACT+AGG + chr4_3:56241728-56241747 Msa0649560:CDS 40.0%
! TTGTGGCGGAAAAGCTAGAT+AGG + chr4_3:56239914-56239933 Msa0649560:CDS 45.0%
AGAATTGCGTCGAGCAAAGT+TGG + chr4_3:56239976-56239995 Msa0649560:CDS 45.0%
CAGAAAACCTAATACTCCGG+TGG + chr4_3:56240002-56240021 Msa0649560:CDS 45.0%
AAAACCTAATACTCCGGTGG+TGG + chr4_3:56240005-56240024 Msa0649560:CDS 45.0%
AATATACGTAAAGCCCCCGT+TGG + chr4_3:56240111-56240130 Msa0649560:CDS 45.0%
TCTCAATATGTTTGGCTGGG+TGG - chr4_3:56240486-56240505 None:intergenic 45.0%
!! CATTTTCAGGGCTGTTCTTC+AGG + chr4_3:56240877-56240896 Msa0649560:CDS 45.0%
!! TTTTCAGGGCTGTTCTTCAG+GGG + chr4_3:56240879-56240898 Msa0649560:CDS 45.0%
CGTGTATTCTCTGCTCACAA+TGG + chr4_3:56241005-56241024 Msa0649560:intron 45.0%
TAGAAACAAATCCCCGGAGT+TGG + chr4_3:56241028-56241047 Msa0649560:intron 45.0%
AGAAACAAATCCCCGGAGTT+GGG + chr4_3:56241029-56241048 Msa0649560:intron 45.0%
ATTGTGATCCTACCCAACTC+CGG - chr4_3:56241044-56241063 None:intergenic 45.0%
GATTGTAGGATGTCCTGATG+TGG + chr4_3:56241089-56241108 Msa0649560:intron 45.0%
CCATCAAATTCCTCCACATC+AGG - chr4_3:56241105-56241124 None:intergenic 45.0%
CCTGATGTGGAGGAATTTGA+TGG + chr4_3:56241102-56241121 Msa0649560:CDS 45.0%
!! CATTTGGTGTTTATTGGGGC+TGG + chr4_3:56241129-56241148 Msa0649560:CDS 45.0%
GAGGTTCAGCTGCAATTGAA+AGG + chr4_3:56241548-56241567 Msa0649560:CDS 45.0%
TTCAGCTGCAATTGAAAGGG+CGG + chr4_3:56241552-56241571 Msa0649560:CDS 45.0%
TGCAATTGAAAGGGCGGTTA+AGG + chr4_3:56241558-56241577 Msa0649560:CDS 45.0%
! GTTAAGGCACCAACTATTGC+CGG + chr4_3:56241574-56241593 Msa0649560:CDS 45.0%
GCTTTGTCCCGGTAAATAGT+AGG - chr4_3:56241612-56241631 None:intergenic 45.0%
ACAGGTACAGAGATGGACAT+TGG - chr4_3:56241787-56241806 None:intergenic 45.0%
! TTGTGGCGGAAAAGCTAGAT+AGG + chr4_3:56239914-56239933 Msa0649560:CDS 45.0%
AGAATTGCGTCGAGCAAAGT+TGG + chr4_3:56239976-56239995 Msa0649560:CDS 45.0%
CAGAAAACCTAATACTCCGG+TGG + chr4_3:56240002-56240021 Msa0649560:CDS 45.0%
AAAACCTAATACTCCGGTGG+TGG + chr4_3:56240005-56240024 Msa0649560:CDS 45.0%
AATATACGTAAAGCCCCCGT+TGG + chr4_3:56240111-56240130 Msa0649560:CDS 45.0%
TCTCAATATGTTTGGCTGGG+TGG - chr4_3:56240486-56240505 None:intergenic 45.0%
!! CATTTTCAGGGCTGTTCTTC+AGG + chr4_3:56240877-56240896 Msa0649560:CDS 45.0%
!! TTTTCAGGGCTGTTCTTCAG+GGG + chr4_3:56240879-56240898 Msa0649560:CDS 45.0%
CGTGTATTCTCTGCTCACAA+TGG + chr4_3:56241005-56241024 Msa0649560:intron 45.0%
TAGAAACAAATCCCCGGAGT+TGG + chr4_3:56241028-56241047 Msa0649560:intron 45.0%
AGAAACAAATCCCCGGAGTT+GGG + chr4_3:56241029-56241048 Msa0649560:intron 45.0%
ATTGTGATCCTACCCAACTC+CGG - chr4_3:56241044-56241063 None:intergenic 45.0%
GATTGTAGGATGTCCTGATG+TGG + chr4_3:56241089-56241108 Msa0649560:intron 45.0%
CCATCAAATTCCTCCACATC+AGG - chr4_3:56241105-56241124 None:intergenic 45.0%
CCTGATGTGGAGGAATTTGA+TGG + chr4_3:56241102-56241121 Msa0649560:CDS 45.0%
!! CATTTGGTGTTTATTGGGGC+TGG + chr4_3:56241129-56241148 Msa0649560:CDS 45.0%
GAGGTTCAGCTGCAATTGAA+AGG + chr4_3:56241548-56241567 Msa0649560:CDS 45.0%
TTCAGCTGCAATTGAAAGGG+CGG + chr4_3:56241552-56241571 Msa0649560:CDS 45.0%
TGCAATTGAAAGGGCGGTTA+AGG + chr4_3:56241558-56241577 Msa0649560:CDS 45.0%
! GTTAAGGCACCAACTATTGC+CGG + chr4_3:56241574-56241593 Msa0649560:CDS 45.0%
GCTTTGTCCCGGTAAATAGT+AGG - chr4_3:56241612-56241631 None:intergenic 45.0%
ACAGGTACAGAGATGGACAT+TGG - chr4_3:56241787-56241806 None:intergenic 45.0%
TGCCCGTCGTATGCTACATT+TGG - chr4_3:56240740-56240759 None:intergenic 50.0%
ATGTAGCATACGACGGGCAA+CGG + chr4_3:56240741-56240760 Msa0649560:CDS 50.0%
TTGTGATCCTACCCAACTCC+GGG - chr4_3:56241043-56241062 None:intergenic 50.0%
TGTAGGATGTCCTGATGTGG+AGG + chr4_3:56241092-56241111 Msa0649560:intron 50.0%
GATGCGTTGTGGAACACCAA+CGG + chr4_3:56241480-56241499 Msa0649560:CDS 50.0%
ATGCGTTGTGGAACACCAAC+GGG + chr4_3:56241481-56241500 Msa0649560:CDS 50.0%
TTGTGGAACACCAACGGGTA+AGG + chr4_3:56241486-56241505 Msa0649560:CDS 50.0%
ACTGCATTCTCCTTACCCGT+TGG - chr4_3:56241499-56241518 None:intergenic 50.0%
CAGCATTGCTCGAGTTATGC+CGG + chr4_3:56241521-56241540 Msa0649560:CDS 50.0%
ACGTCTAGATCGCTTTGTCC+CGG - chr4_3:56241623-56241642 None:intergenic 50.0%
AGGGATTCAAGCTTTGCTGC+AGG + chr4_3:56241748-56241767 Msa0649560:CDS 50.0%
GGGATTCAAGCTTTGCTGCA+GGG + chr4_3:56241749-56241768 Msa0649560:CDS 50.0%
GGATTCAAGCTTTGCTGCAG+GGG + chr4_3:56241750-56241769 Msa0649560:CDS 50.0%
TGCCCGTCGTATGCTACATT+TGG - chr4_3:56240740-56240759 None:intergenic 50.0%
ATGTAGCATACGACGGGCAA+CGG + chr4_3:56240741-56240760 Msa0649560:CDS 50.0%
TTGTGATCCTACCCAACTCC+GGG - chr4_3:56241043-56241062 None:intergenic 50.0%
TGTAGGATGTCCTGATGTGG+AGG + chr4_3:56241092-56241111 Msa0649560:intron 50.0%
GATGCGTTGTGGAACACCAA+CGG + chr4_3:56241480-56241499 Msa0649560:CDS 50.0%
ATGCGTTGTGGAACACCAAC+GGG + chr4_3:56241481-56241500 Msa0649560:CDS 50.0%
TTGTGGAACACCAACGGGTA+AGG + chr4_3:56241486-56241505 Msa0649560:CDS 50.0%
ACTGCATTCTCCTTACCCGT+TGG - chr4_3:56241499-56241518 None:intergenic 50.0%
CAGCATTGCTCGAGTTATGC+CGG + chr4_3:56241521-56241540 Msa0649560:CDS 50.0%
ACGTCTAGATCGCTTTGTCC+CGG - chr4_3:56241623-56241642 None:intergenic 50.0%
AGGGATTCAAGCTTTGCTGC+AGG + chr4_3:56241748-56241767 Msa0649560:CDS 50.0%
GGGATTCAAGCTTTGCTGCA+GGG + chr4_3:56241749-56241768 Msa0649560:CDS 50.0%
GGATTCAAGCTTTGCTGCAG+GGG + chr4_3:56241750-56241769 Msa0649560:CDS 50.0%
! GAAGCATTTGCAGCCACCAC+CGG - chr4_3:56240021-56240040 None:intergenic 55.0%
ACGCTCCATCTGAGCACCAA+CGG - chr4_3:56240130-56240149 None:intergenic 55.0%
CGGGCAACGGTTCTCTTACA+AGG + chr4_3:56240754-56240773 Msa0649560:CDS 55.0%
ACAAATCCCCGGAGTTGGGT+AGG + chr4_3:56241033-56241052 Msa0649560:intron 55.0%
TGTGATCCTACCCAACTCCG+GGG - chr4_3:56241042-56241061 None:intergenic 55.0%
TTGCTCGAGTTATGCCGGAG+TGG + chr4_3:56241526-56241545 Msa0649560:CDS 55.0%
TTGCAGCTGAACCTCCACTC+CGG - chr4_3:56241543-56241562 None:intergenic 55.0%
! GAAGCATTTGCAGCCACCAC+CGG - chr4_3:56240021-56240040 None:intergenic 55.0%
ACGCTCCATCTGAGCACCAA+CGG - chr4_3:56240130-56240149 None:intergenic 55.0%
CGGGCAACGGTTCTCTTACA+AGG + chr4_3:56240754-56240773 Msa0649560:CDS 55.0%
ACAAATCCCCGGAGTTGGGT+AGG + chr4_3:56241033-56241052 Msa0649560:intron 55.0%
TGTGATCCTACCCAACTCCG+GGG - chr4_3:56241042-56241061 None:intergenic 55.0%
TTGCTCGAGTTATGCCGGAG+TGG + chr4_3:56241526-56241545 Msa0649560:CDS 55.0%
TTGCAGCTGAACCTCCACTC+CGG - chr4_3:56241543-56241562 None:intergenic 55.0%
! GCAGCCACCACCGGAGTATT+AGG - chr4_3:56240012-56240031 None:intergenic 60.0%
CTCCATCTGAGCACCAACGG+GGG - chr4_3:56240127-56240146 None:intergenic 60.0%
GCTCCATCTGAGCACCAACG+GGG - chr4_3:56240128-56240147 None:intergenic 60.0%
CGCTCCATCTGAGCACCAAC+GGG - chr4_3:56240129-56240148 None:intergenic 60.0%
CTCGAGTTATGCCGGAGTGG+AGG + chr4_3:56241529-56241548 Msa0649560:CDS 60.0%
! GCAGCCACCACCGGAGTATT+AGG - chr4_3:56240012-56240031 None:intergenic 60.0%
CTCCATCTGAGCACCAACGG+GGG - chr4_3:56240127-56240146 None:intergenic 60.0%
GCTCCATCTGAGCACCAACG+GGG - chr4_3:56240128-56240147 None:intergenic 60.0%
CGCTCCATCTGAGCACCAAC+GGG - chr4_3:56240129-56240148 None:intergenic 60.0%
CTCGAGTTATGCCGGAGTGG+AGG + chr4_3:56241529-56241548 Msa0649560:CDS 60.0%
! AGCCCCCGTTGGTGCTCAGA+TGG + chr4_3:56240122-56240141 Msa0649560:CDS 65.0%
! AGCCCCCGTTGGTGCTCAGA+TGG + chr4_3:56240122-56240141 Msa0649560:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 56239910 56241813 56239910 ID=Msa0649560;Name=Msa0649560
chr4_3 mRNA 56239910 56241813 56239910 ID=Msa0649560-mRNA-1;Parent=Msa0649560;Name=Msa0649560-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0|0|0.83|1|1|6|0|278
chr4_3 exon 56239910 56240149 56239910 ID=Msa0649560-mRNA-1:exon:14547;Parent=Msa0649560-mRNA-1
chr4_3 exon 56240701 56240775 56240701 ID=Msa0649560-mRNA-1:exon:14548;Parent=Msa0649560-mRNA-1
chr4_3 exon 56240869 56240938 56240869 ID=Msa0649560-mRNA-1:exon:14549;Parent=Msa0649560-mRNA-1
chr4_3 exon 56241097 56241196 56241097 ID=Msa0649560-mRNA-1:exon:14550;Parent=Msa0649560-mRNA-1
chr4_3 exon 56241397 56241410 56241397 ID=Msa0649560-mRNA-1:exon:14551;Parent=Msa0649560-mRNA-1
chr4_3 exon 56241476 56241813 56241476 ID=Msa0649560-mRNA-1:exon:14552;Parent=Msa0649560-mRNA-1
chr4_3 CDS 56239910 56240149 56239910 ID=Msa0649560-mRNA-1:cds;Parent=Msa0649560-mRNA-1
chr4_3 CDS 56240701 56240775 56240701 ID=Msa0649560-mRNA-1:cds;Parent=Msa0649560-mRNA-1
chr4_3 CDS 56240869 56240938 56240869 ID=Msa0649560-mRNA-1:cds;Parent=Msa0649560-mRNA-1
chr4_3 CDS 56241097 56241196 56241097 ID=Msa0649560-mRNA-1:cds;Parent=Msa0649560-mRNA-1
chr4_3 CDS 56241397 56241410 56241397 ID=Msa0649560-mRNA-1:cds;Parent=Msa0649560-mRNA-1
chr4_3 CDS 56241476 56241813 56241476 ID=Msa0649560-mRNA-1:cds;Parent=Msa0649560-mRNA-1
Gene Sequence

>Msa0649560

ATGTTTGTGGCGGAAAAGCTAGATAGGTTCAAGAAACAACAAGAGAAGTGTCAATCGACACTCTTGAGAATTGCGTCGAGCAAAGTTGGTAGCAGAAAACCTAATACTCCGGTGGTGGCTGCAAATGCTTCATCAAATGGAAGAAATTCAAAAACTGGTGTTAAATTCTCAAATGATACTGAGAGGCTTCAACAGATTAATAATATACGTAAAGCCCCCGTTGGTGCTCAGATGGAGCGTGCTAACAAAGATGTTTCTGAGAGTCTGAGGAAAAAACCAAATGTAGCATACGACGGGCAACGGTTCTCTTACAAGCATGTTCTCATTTTCAGGGCTGTTCTTCAGGGGAATGATCAAAATGAAATTGAGATTTGTGTTGAAAGTGGATGTCCTGATGTGGAGGAATTTGATGGGACTCATTTGGTGTTTATTGGGGCTGGATCAGATCCTTATGAAGTTATAACAAATGCTTTACCTTTGATCAAGACTATTGAGTCGGGAATGATGCGTTGTGGAACACCAACGGGTAAGGAGAATGCAGTTGCAGCATTGCTCGAGTTATGCCGGAGTGGAGGTTCAGCTGCAATTGAAAGGGCGGTTAAGGCACCAACTATTGCCGGATTACTTCAAACCCTACTATTTACCGGGACAAAGCGATCTAGACGTAAAGCCGCTTCACTTGCTATAGTGTTTCAGAGATGTGAAAATGCATCTCTACATTATGGTGTATTAGGTGTAGGCTATGCATTGGCTAGCAATTCAGCTCAAACTAGGGATTCAAGCTTTGCTGCAGGGGATGTTTTAGTACCAATGTCCATCTCTGTACCTGTAATATAG

Protein sequence

>Msa0649560

MFVAEKLDRFKKQQEKCQSTLLRIASSKVGSRKPNTPVVAANASSNGRNSKTGVKFSNDTERLQQINNIRKAPVGAQMERANKDVSESLRKKPNVAYDGQRFSYKHVLIFRAVLQGNDQNEIEICVESGCPDVEEFDGTHLVFIGAGSDPYEVITNALPLIKTIESGMMRCGTPTGKENAVAALLELCRSGGSAAIERAVKAPTIAGLLQTLLFTGTKRSRRKAASLAIVFQRCENASLHYGVLGVGYALASNSAQTRDSSFAAGDVLVPMSISVPVI*