Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649860 | AES89877.2 | 98.649 | 148 | 2 | 0 | 1 | 148 | 29 | 176 | 3.91e-101 | 297 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649860 | sp|Q8LPW2|RT13_SOYBN | 80.405 | 148 | 29 | 0 | 1 | 148 | 1 | 148 | 1.69e-78 | 232 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649860 | G7JF11 | 98.649 | 148 | 2 | 0 | 1 | 148 | 29 | 176 | 1.87e-101 | 297 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0579800 | Msa0649860 | 0.930662 | 1.181516e-93 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649860 | MtrunA17_Chr4g0041831 | 98.649 | 148 | 2 | 0 | 1 | 148 | 1 | 148 | 6.10e-105 | 296 |
| Msa0649860 | MtrunA17_Chr3g0115121 | 48.462 | 130 | 67 | 0 | 8 | 137 | 23 | 152 | 1.90e-35 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649860 | AT1G77750.1 | 44.118 | 136 | 73 | 1 | 4 | 139 | 7 | 139 | 4.18e-37 | 124 |
| Msa0649860 | AT5G14320.1 | 50.820 | 122 | 52 | 2 | 16 | 137 | 40 | 153 | 1.20e-34 | 119 |
| Msa0649860 | AT5G14320.2 | 49.398 | 83 | 34 | 2 | 16 | 98 | 40 | 114 | 4.90e-18 | 75.5 |
Find 79 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATTTCTGACTCAATATT+TGG | 0.141348 | 4_3:+56593305 | None:intergenic |
| ACTTACCCTTTCATGCTTAT+TGG | 0.184681 | 4_3:-56591330 | Msa0649860:three_prime_UTR |
| GACGGAGAACAGAGAGGTTT+TGG | 0.222879 | 4_3:+56593197 | None:intergenic |
| CTGTATTGATGTTGTCTTGC+TGG | 0.233629 | 4_3:-56591271 | Msa0649860:three_prime_UTR |
| CCGAAGGCAGGCAGCTATAT+TGG | 0.250518 | 4_3:+56592160 | None:intergenic |
| TACTCAAGCCGCTTGTTATC+TGG | 0.260205 | 4_3:+56591868 | None:intergenic |
| CATCTTGGAATCGGATGATT+TGG | 0.294287 | 4_3:+56592205 | None:intergenic |
| TCCAAGATGTTTGGCTCTGC+TGG | 0.306492 | 4_3:-56592191 | Msa0649860:exon |
| GTACTTGATTGGAAATGATT+TGG | 0.323882 | 4_3:-56591713 | Msa0649860:intron |
| AACCGGTCCACAGTGGAGTT+TGG | 0.324164 | 4_3:+56593260 | None:intergenic |
| TCCATTTCTTTCACCAAAAC+AGG | 0.326774 | 4_3:-56593155 | Msa0649860:five_prime_UTR |
| TTGCTTTCCAAGTACTTGAT+TGG | 0.332620 | 4_3:-56591724 | Msa0649860:CDS |
| TTTGAGAGATGAAGCTTGTT+GGG | 0.337723 | 4_3:+56593114 | None:intergenic |
| ACCGGTCCACAGTGGAGTTT+GGG | 0.358319 | 4_3:+56593261 | None:intergenic |
| AAGTTAAATGTGTGTAGATT+TGG | 0.360793 | 4_3:+56591349 | None:intergenic |
| TATAAACATTGGAGGTGGTC+TGG | 0.365430 | 4_3:-56591902 | Msa0649860:CDS |
| TGCCGATAGTTTACCCTGTC+GGG | 0.377868 | 4_3:-56591522 | Msa0649860:CDS |
| CACTGTGGACCGGTTTGGAC+CGG | 0.383782 | 4_3:-56593252 | Msa0649860:five_prime_UTR |
| AAGATGAATCGAACCTGTTT+TGG | 0.386353 | 4_3:+56593142 | None:intergenic |
| GTGCTGCCAGACCCCAGTTC+CGG | 0.393673 | 4_3:-56592247 | Msa0649860:five_prime_UTR |
| ATCATTTCCAATCAAGTACT+TGG | 0.399433 | 4_3:+56591717 | None:intergenic |
| TATGCTCTTCAGCGTATTCA+TGG | 0.412168 | 4_3:-56591847 | Msa0649860:CDS |
| AACTCCACTGTGGACCGGTT+TGG | 0.412522 | 4_3:-56593257 | Msa0649860:five_prime_UTR |
| CCAATATAGCTGCCTGCCTT+CGG | 0.417480 | 4_3:-56592160 | Msa0649860:CDS |
| TCATCCGATTCCAAGATGTT+TGG | 0.434910 | 4_3:-56592200 | Msa0649860:exon |
| ATGAGTTCGTTGTCCCCGAC+AGG | 0.439732 | 4_3:+56591508 | None:intergenic |
| CTTCAGCGTATTCATGGGAT+TGG | 0.440182 | 4_3:-56591841 | Msa0649860:CDS |
| TCCAGCAGAGCCAAACATCT+TGG | 0.448478 | 4_3:+56592190 | None:intergenic |
| TCAGAGAGATGTGGGAAGGT+TGG | 0.448954 | 4_3:-56591576 | Msa0649860:CDS |
| AAGTTAGTTCAGAGAGATGT+GGG | 0.457319 | 4_3:-56591584 | Msa0649860:CDS |
| ATAAACATTGGAGGTGGTCT+GGG | 0.459744 | 4_3:-56591901 | Msa0649860:CDS |
| GAAAGAATAAATCATGTTGA+AGG | 0.472992 | 4_3:-56591173 | Msa0649860:three_prime_UTR |
| GATAAGCCAATAAGCATGAA+AGG | 0.491894 | 4_3:+56591324 | None:intergenic |
| GAGAGATGTGGGAAGGTTGG+TGG | 0.493094 | 4_3:-56591573 | Msa0649860:CDS |
| TAGTTCAGAGAGATGTGGGA+AGG | 0.493943 | 4_3:-56591580 | Msa0649860:CDS |
| TTTGGAAGATCTGTAGAAAT+GGG | 0.494905 | 4_3:+56593215 | None:intergenic |
| CATCACATTGTGTGTGAGCT+TGG | 0.494957 | 4_3:-56591805 | Msa0649860:CDS |
| GAAGAGAAAGTGAATAAAGA+CGG | 0.500810 | 4_3:+56593179 | None:intergenic |
| AGAGCCAAACATCTTGGAAT+CGG | 0.503184 | 4_3:+56592196 | None:intergenic |
| CTTGGAATCGGATGATTTGG+AGG | 0.504106 | 4_3:+56592208 | None:intergenic |
| TTCAATGCTACAGAGGGATC+AGG | 0.509277 | 4_3:-56591547 | Msa0649860:CDS |
| AGGAGGACTATGCGTACTTA+CGG | 0.516509 | 4_3:-56591470 | Msa0649860:CDS |
| TATATGTAGCTGTCATTGAT+TGG | 0.523596 | 4_3:+56591210 | None:intergenic |
| TGAGTCGACCCGGTCCAAAC+CGG | 0.529678 | 4_3:+56593243 | None:intergenic |
| ACCCAAACTCCACTGTGGAC+CGG | 0.538870 | 4_3:-56593262 | Msa0649860:five_prime_UTR |
| AAAGTTAGTTCAGAGAGATG+TGG | 0.539738 | 4_3:-56591585 | Msa0649860:CDS |
| AGAGATGTGGGAAGGTTGGT+GGG | 0.544599 | 4_3:-56591572 | Msa0649860:CDS |
| CGTATTCATGGGATTGGCCG+TGG | 0.544806 | 4_3:-56591835 | Msa0649860:CDS |
| ATGGGTCGGGTGAGTCGACC+CGG | 0.546216 | 4_3:+56593233 | None:intergenic |
| ACTGTGGACCGGTTTGGACC+GGG | 0.547540 | 4_3:-56593251 | Msa0649860:five_prime_UTR |
| TTGAGAGATGAAGCTTGTTG+GGG | 0.552595 | 4_3:+56593115 | None:intergenic |
| AAGATCTGTAGAAATGGGTC+GGG | 0.554578 | 4_3:+56593220 | None:intergenic |
| GAAGATCTGTAGAAATGGGT+CGG | 0.563451 | 4_3:+56593219 | None:intergenic |
| ATAAGCCAATAAGCATGAAA+GGG | 0.564556 | 4_3:+56591325 | None:intergenic |
| ATGCTCTTCAGCGTATTCAT+GGG | 0.565567 | 4_3:-56591846 | Msa0649860:CDS |
| TCCCCGACAGGGTAAACTAT+CGG | 0.567861 | 4_3:+56591520 | None:intergenic |
| CTCATACAAATGCCCGCACT+AGG | 0.582313 | 4_3:-56591490 | Msa0649860:CDS |
| AGTTTCGCGGTGTGCAAGTG+CGG | 0.582479 | 4_3:-56591927 | Msa0649860:CDS |
| ATGCCGATAGTTTACCCTGT+CGG | 0.584612 | 4_3:-56591523 | Msa0649860:CDS |
| GTGCGGAATATAAACATTGG+AGG | 0.589196 | 4_3:-56591910 | Msa0649860:CDS |
| ACGCATAGTCCTCCTAGTGC+GGG | 0.590149 | 4_3:+56591478 | None:intergenic |
| CAAGTGCGGAATATAAACAT+TGG | 0.595646 | 4_3:-56591913 | Msa0649860:CDS |
| AGTTTGGGTTGTAAATATCA+CGG | 0.596271 | 4_3:+56593276 | None:intergenic |
| CGGAATATAAACATTGGAGG+TGG | 0.605864 | 4_3:-56591907 | Msa0649860:CDS |
| ATACAAATGCCCGCACTAGG+AGG | 0.613577 | 4_3:-56591487 | Msa0649860:CDS |
| TACGCATAGTCCTCCTAGTG+CGG | 0.618835 | 4_3:+56591477 | None:intergenic |
| ACATGATTTATTCTTTCTCG+CGG | 0.623722 | 4_3:+56591179 | None:intergenic |
| ATCTTTCTTACAGAATGGAG+CGG | 0.635914 | 4_3:+56593088 | None:intergenic |
| AACATTGGAGGTGGTCTGGG+AGG | 0.637937 | 4_3:-56591898 | Msa0649860:CDS |
| GCCGATAGTTTACCCTGTCG+GGG | 0.639544 | 4_3:-56591521 | Msa0649860:CDS |
| TGGGTATTCAATGCTACAGA+GGG | 0.643857 | 4_3:-56591553 | Msa0649860:CDS |
| AGTTGAGAACAAATATGTGA+AGG | 0.652674 | 4_3:-56591782 | Msa0649860:CDS |
| GTGAGATTCCAGATAACAAG+CGG | 0.653241 | 4_3:-56591876 | Msa0649860:CDS |
| TGAGTTCGTTGTCCCCGACA+GGG | 0.657819 | 4_3:+56591509 | None:intergenic |
| AATAAAGACGGAGAACAGAG+AGG | 0.680887 | 4_3:+56593191 | None:intergenic |
| CGGTCCAAACCGGTCCACAG+TGG | 0.704874 | 4_3:+56593253 | None:intergenic |
| GTGGGTATTCAATGCTACAG+AGG | 0.707000 | 4_3:-56591554 | Msa0649860:CDS |
| AGGACTATGCGTACTTACGG+AGG | 0.735045 | 4_3:-56591467 | Msa0649860:CDS |
| TTACAACCCAAACTCCACTG+TGG | 0.744904 | 4_3:-56593267 | Msa0649860:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTAATTTATTTTATCTTTT+AGG | + | chr4_3:56591780-56591799 | None:intergenic | 10.0% |
| !!! | TTTATTTTATCTTTTAGGTT+TGG | + | chr4_3:56591775-56591794 | None:intergenic | 15.0% |
| !!! | GTTTTCAAATAAATAAGAAT+TGG | + | chr4_3:56592170-56592189 | None:intergenic | 15.0% |
| !!! | TTTTCTCTTTTCATTATTAT+GGG | - | chr4_3:56592345-56592364 | Msa0649860:intron | 15.0% |
| !!! | ATAATGTTCTAAAACAAAAA+AGG | + | chr4_3:56592385-56592404 | None:intergenic | 15.0% |
| !! | AGACATTATACATTATATTA+TGG | + | chr4_3:56592827-56592846 | None:intergenic | 15.0% |
| !! | AAAATTTCTGACTCAATATT+TGG | + | chr4_3:56591163-56591182 | None:intergenic | 20.0% |
| !! | TGTATAACAGTAACATTATA+CGG | + | chr4_3:56591490-56591509 | None:intergenic | 20.0% |
| !! | ATAGTTTCAAAATTGAATGT+GGG | - | chr4_3:56591710-56591729 | Msa0649860:intron | 20.0% |
| !!! | GTTTTCTCTTTTCATTATTA+TGG | - | chr4_3:56592344-56592363 | Msa0649860:intron | 20.0% |
| !! | TTATGGAACAAAAATAGAAA+AGG | + | chr4_3:56592810-56592829 | None:intergenic | 20.0% |
| !!! | CTTATCAAATAAGTTTTGTT+AGG | - | chr4_3:56593077-56593096 | Msa0649860:intron | 20.0% |
| ! | TAAAGATCTTTCTTACAGAA+TGG | + | chr4_3:56591385-56591404 | None:intergenic | 25.0% |
| !! | ATCTAAGACATAGAATAAGT+AGG | - | chr4_3:56591552-56591571 | Msa0649860:CDS | 25.0% |
| ! | GATAGTTTCAAAATTGAATG+TGG | - | chr4_3:56591709-56591728 | Msa0649860:intron | 25.0% |
| ! | AGATCTAGAGATTAATTAGT+TGG | - | chr4_3:56592041-56592060 | Msa0649860:intron | 25.0% |
| ! | TAATTAGTTGGATAGAAATG+TGG | - | chr4_3:56592053-56592072 | Msa0649860:intron | 25.0% |
| !!! | AAGTTTTATCCTACTAAATG+GGG | + | chr4_3:56592122-56592141 | None:intergenic | 25.0% |
| !!! | CAAGTTTTATCCTACTAAAT+GGG | + | chr4_3:56592123-56592142 | None:intergenic | 25.0% |
| ! | TAATGAAAAGAGAAAACTCA+CGG | + | chr4_3:56592341-56592360 | None:intergenic | 25.0% |
| !!! | ATTTTTAATTGCAAAGCATG+CGG | + | chr4_3:56592488-56592507 | None:intergenic | 25.0% |
| !! | AATATAGTTCTCTTTTGCTT+AGG | + | chr4_3:56592710-56592729 | None:intergenic | 25.0% |
| ! | AAGTTAAATGTGTGTAGATT+TGG | + | chr4_3:56593119-56593138 | None:intergenic | 25.0% |
| ! | GAAAGAATAAATCATGTTGA+AGG | - | chr4_3:56593292-56593311 | Msa0649860:five_prime_UTR | 25.0% |
| !! | AGTTTGGGTTGTAAATATCA+CGG | + | chr4_3:56591192-56591211 | None:intergenic | 30.0% |
| TTTGGAAGATCTGTAGAAAT+GGG | + | chr4_3:56591253-56591272 | None:intergenic | 30.0% | |
| !! | TTTTGGAAGATCTGTAGAAA+TGG | + | chr4_3:56591254-56591273 | None:intergenic | 30.0% |
| GAAGAGAAAGTGAATAAAGA+CGG | + | chr4_3:56591289-56591308 | None:intergenic | 30.0% | |
| ATTCTATGTCTTAGATGAAC+AGG | + | chr4_3:56591548-56591567 | None:intergenic | 30.0% | |
| ATAGAATAAGTAGGAGACTT+TGG | - | chr4_3:56591561-56591580 | Msa0649860:CDS | 30.0% | |
| TAGAATAAGTAGGAGACTTT+GGG | - | chr4_3:56591562-56591581 | Msa0649860:CDS | 30.0% | |
| TGTTTGATAAAATGCCACAA+CGG | - | chr4_3:56591622-56591641 | Msa0649860:intron | 30.0% | |
| !!! | TTTTGAAGTAAAAACCGTTG+TGG | + | chr4_3:56591639-56591658 | None:intergenic | 30.0% |
| !! | TTCCACCATTTTTCTACTAT+GGG | + | chr4_3:56591901-56591920 | None:intergenic | 30.0% |
| !! | TTTCCACCATTTTTCTACTA+TGG | + | chr4_3:56591902-56591921 | None:intergenic | 30.0% |
| CTCTATACTACATAATCTAC+AGG | + | chr4_3:56591959-56591978 | None:intergenic | 30.0% | |
| ! | TGGTATATGATAGAGCATTA+TGG | - | chr4_3:56592073-56592092 | Msa0649860:intron | 30.0% |
| !! | CCAAGTTTTATCCTACTAAA+TGG | + | chr4_3:56592124-56592143 | None:intergenic | 30.0% |
| CCATTTAGTAGGATAAAACT+TGG | - | chr4_3:56592121-56592140 | Msa0649860:intron | 30.0% | |
| ! | AAGTCATAAAAGTGCAATTG+AGG | + | chr4_3:56592409-56592428 | None:intergenic | 30.0% |
| TTCTTTCTTAGCTTCAACTT+AGG | - | chr4_3:56592449-56592468 | Msa0649860:intron | 30.0% | |
| TCTTTCTTAGCTTCAACTTA+GGG | - | chr4_3:56592450-56592469 | Msa0649860:intron | 30.0% | |
| ! | TCATTATAGTTGCACTGTTT+TGG | - | chr4_3:56592507-56592526 | Msa0649860:intron | 30.0% |
| AGTTGAGAACAAATATGTGA+AGG | - | chr4_3:56592683-56592702 | Msa0649860:intron | 30.0% | |
| ATCATTTCCAATCAAGTACT+TGG | + | chr4_3:56592751-56592770 | None:intergenic | 30.0% | |
| GTACTTGATTGGAAATGATT+TGG | - | chr4_3:56592752-56592771 | Msa0649860:intron | 30.0% | |
| ATAAGCCAATAAGCATGAAA+GGG | + | chr4_3:56593143-56593162 | None:intergenic | 30.0% | |
| TATATGTAGCTGTCATTGAT+TGG | + | chr4_3:56593258-56593277 | None:intergenic | 30.0% | |
| ACATGATTTATTCTTTCTCG+CGG | + | chr4_3:56593289-56593308 | None:intergenic | 30.0% | |
| TCCATTTCTTTCACCAAAAC+AGG | - | chr4_3:56591310-56591329 | Msa0649860:three_prime_UTR | 35.0% | |
| !!! | ACCTGTTTTGGTGAAAGAAA+TGG | + | chr4_3:56591314-56591333 | None:intergenic | 35.0% |
| ! | AAGATGAATCGAACCTGTTT+TGG | + | chr4_3:56591326-56591345 | None:intergenic | 35.0% |
| ! | TTTGAGAGATGAAGCTTGTT+GGG | + | chr4_3:56591354-56591373 | None:intergenic | 35.0% |
| !! | TTTTGAGAGATGAAGCTTGT+TGG | + | chr4_3:56591355-56591374 | None:intergenic | 35.0% |
| ATCTTTCTTACAGAATGGAG+CGG | + | chr4_3:56591380-56591399 | None:intergenic | 35.0% | |
| !! | ATGATGTTGAGTTGAATGTG+TGG | - | chr4_3:56591813-56591832 | Msa0649860:CDS | 35.0% |
| TAGCACCCATAGTAGAAAAA+TGG | - | chr4_3:56591893-56591912 | Msa0649860:CDS | 35.0% | |
| ! | GTAGAAAAATGGTGGAAACT+AGG | - | chr4_3:56591904-56591923 | Msa0649860:CDS | 35.0% |
| TTAGTTAAAAACCGGAACTG+GGG | + | chr4_3:56592232-56592251 | None:intergenic | 35.0% | |
| CTTAGTTAAAAACCGGAACT+GGG | + | chr4_3:56592233-56592252 | None:intergenic | 35.0% | |
| TTATTATGGGTTTGTGACTG+CGG | - | chr4_3:56592358-56592377 | Msa0649860:intron | 35.0% | |
| !!! | TTTGGTTTTGTACAGTTTCG+CGG | - | chr4_3:56592525-56592544 | Msa0649860:intron | 35.0% |
| CAAGTGCGGAATATAAACAT+TGG | - | chr4_3:56592552-56592571 | Msa0649860:intron | 35.0% | |
| TTGCTTTCCAAGTACTTGAT+TGG | - | chr4_3:56592741-56592760 | Msa0649860:intron | 35.0% | |
| AAAGTTAGTTCAGAGAGATG+TGG | - | chr4_3:56592880-56592899 | Msa0649860:intron | 35.0% | |
| AAGTTAGTTCAGAGAGATGT+GGG | - | chr4_3:56592881-56592900 | Msa0649860:intron | 35.0% | |
| ACTTACCCTTTCATGCTTAT+TGG | - | chr4_3:56593135-56593154 | Msa0649860:five_prime_UTR | 35.0% | |
| GATAAGCCAATAAGCATGAA+AGG | + | chr4_3:56593144-56593163 | None:intergenic | 35.0% | |
| AAGATCTGTAGAAATGGGTC+GGG | + | chr4_3:56591248-56591267 | None:intergenic | 40.0% | |
| GAAGATCTGTAGAAATGGGT+CGG | + | chr4_3:56591249-56591268 | None:intergenic | 40.0% | |
| AATAAAGACGGAGAACAGAG+AGG | + | chr4_3:56591277-56591296 | None:intergenic | 40.0% | |
| !! | TTGAGAGATGAAGCTTGTTG+GGG | + | chr4_3:56591353-56591372 | None:intergenic | 40.0% |
| GAATGTGTGGTGAGATTAGA+CGG | - | chr4_3:56591826-56591845 | Msa0649860:CDS | 40.0% | |
| AATGTGTGGTGAGATTAGAC+GGG | - | chr4_3:56591827-56591846 | Msa0649860:CDS | 40.0% | |
| ACATTAGAGACAGAGAGAGT+TGG | - | chr4_3:56591868-56591887 | Msa0649860:CDS | 40.0% | |
| CATTAGAGACAGAGAGAGTT+GGG | - | chr4_3:56591869-56591888 | Msa0649860:CDS | 40.0% | |
| ATTAGAGACAGAGAGAGTTG+GGG | - | chr4_3:56591870-56591889 | Msa0649860:CDS | 40.0% | |
| CACCCATAGTAGAAAAATGG+TGG | - | chr4_3:56591896-56591915 | Msa0649860:CDS | 40.0% | |
| ! | AAATGGTGGAAACTAGGCTT+AGG | - | chr4_3:56591910-56591929 | Msa0649860:CDS | 40.0% |
| GAGAGTAGATCAATCACTAG+AGG | - | chr4_3:56591976-56591995 | Msa0649860:intron | 40.0% | |
| AGTAGATCAATCACTAGAGG+CGG | - | chr4_3:56591979-56591998 | Msa0649860:intron | 40.0% | |
| GCTTAGTTAAAAACCGGAAC+TGG | + | chr4_3:56592234-56592253 | None:intergenic | 40.0% | |
| CATCTTGGAATCGGATGATT+TGG | + | chr4_3:56592263-56592282 | None:intergenic | 40.0% | |
| TCATCCGATTCCAAGATGTT+TGG | - | chr4_3:56592265-56592284 | Msa0649860:intron | 40.0% | |
| AGAGCCAAACATCTTGGAAT+CGG | + | chr4_3:56592272-56592291 | None:intergenic | 40.0% | |
| ! | TGCACTTTTATGACTTTGCG+TGG | - | chr4_3:56592413-56592432 | Msa0649860:intron | 40.0% |
| TTTATGACTTTGCGTGGTGT+AGG | - | chr4_3:56592419-56592438 | Msa0649860:intron | 40.0% | |
| TTATGACTTTGCGTGGTGTA+GGG | - | chr4_3:56592420-56592439 | Msa0649860:intron | 40.0% | |
| GTGCGGAATATAAACATTGG+AGG | - | chr4_3:56592555-56592574 | Msa0649860:intron | 40.0% | |
| CGGAATATAAACATTGGAGG+TGG | - | chr4_3:56592558-56592577 | Msa0649860:intron | 40.0% | |
| TATAAACATTGGAGGTGGTC+TGG | - | chr4_3:56592563-56592582 | Msa0649860:intron | 40.0% | |
| ATAAACATTGGAGGTGGTCT+GGG | - | chr4_3:56592564-56592583 | Msa0649860:intron | 40.0% | |
| GTGAGATTCCAGATAACAAG+CGG | - | chr4_3:56592589-56592608 | Msa0649860:intron | 40.0% | |
| TATGCTCTTCAGCGTATTCA+TGG | - | chr4_3:56592618-56592637 | Msa0649860:intron | 40.0% | |
| ATGCTCTTCAGCGTATTCAT+GGG | - | chr4_3:56592619-56592638 | Msa0649860:intron | 40.0% | |
| ! | CAATGTGATGAGCTTTTCCA+CGG | + | chr4_3:56592650-56592669 | None:intergenic | 40.0% |
| TGGGTATTCAATGCTACAGA+GGG | - | chr4_3:56592912-56592931 | Msa0649860:intron | 40.0% | |
| ! | CTGTATTGATGTTGTCTTGC+TGG | - | chr4_3:56593194-56593213 | Msa0649860:five_prime_UTR | 40.0% |
| TTACAACCCAAACTCCACTG+TGG | - | chr4_3:56591198-56591217 | Msa0649860:three_prime_UTR | 45.0% | |
| ACTAAATGGGGTCGTCTACA+TGG | + | chr4_3:56592110-56592129 | None:intergenic | 45.0% | |
| TGTAGACGACCCCATTTAGT+AGG | - | chr4_3:56592110-56592129 | Msa0649860:intron | 45.0% | |
| AGGCGCGCTTAGTTAAAAAC+CGG | + | chr4_3:56592240-56592259 | None:intergenic | 45.0% | |
| ! | CTTGGAATCGGATGATTTGG+AGG | + | chr4_3:56592260-56592279 | None:intergenic | 45.0% |
| ! | TCACGGATAAGTTTTGCCGA+AGG | + | chr4_3:56592324-56592343 | None:intergenic | 45.0% |
| !! | TACTCAAGCCGCTTGTTATC+TGG | + | chr4_3:56592600-56592619 | None:intergenic | 45.0% |
| CTTCAGCGTATTCATGGGAT+TGG | - | chr4_3:56592624-56592643 | Msa0649860:intron | 45.0% | |
| CATCACATTGTGTGTGAGCT+TGG | - | chr4_3:56592660-56592679 | Msa0649860:intron | 45.0% | |
| TAGTTCAGAGAGATGTGGGA+AGG | - | chr4_3:56592885-56592904 | Msa0649860:intron | 45.0% | |
| GTGGGTATTCAATGCTACAG+AGG | - | chr4_3:56592911-56592930 | Msa0649860:intron | 45.0% | |
| TTCAATGCTACAGAGGGATC+AGG | - | chr4_3:56592918-56592937 | Msa0649860:intron | 45.0% | |
| ATGCCGATAGTTTACCCTGT+CGG | - | chr4_3:56592942-56592961 | Msa0649860:intron | 45.0% | |
| AGGAGGACTATGCGTACTTA+CGG | - | chr4_3:56592995-56593014 | Msa0649860:intron | 45.0% | |
| ! | GACGGAGAACAGAGAGGTTT+TGG | + | chr4_3:56591271-56591290 | None:intergenic | 50.0% |
| GTGGTGAGATTAGACGGGAT+TGG | - | chr4_3:56591832-56591851 | Msa0649860:CDS | 50.0% | |
| TGGTGGAAACTAGGCTTAGG+TGG | - | chr4_3:56591913-56591932 | Msa0649860:CDS | 50.0% | |
| GGAAACTAGGCTTAGGTGGT+TGG | - | chr4_3:56591917-56591936 | Msa0649860:CDS | 50.0% | |
| AGATCAATCACTAGAGGCGG+AGG | - | chr4_3:56591982-56592001 | Msa0649860:intron | 50.0% | |
| TAAAAACCGGAACTGGGGTC+TGG | + | chr4_3:56592227-56592246 | None:intergenic | 50.0% | |
| !! | TCCAAGATGTTTGGCTCTGC+TGG | - | chr4_3:56592274-56592293 | Msa0649860:intron | 50.0% |
| TCCAGCAGAGCCAAACATCT+TGG | + | chr4_3:56592278-56592297 | None:intergenic | 50.0% | |
| CCAATATAGCTGCCTGCCTT+CGG | - | chr4_3:56592305-56592324 | Msa0649860:intron | 50.0% | |
| ! | GGATAAGTTTTGCCGAAGGC+AGG | + | chr4_3:56592320-56592339 | None:intergenic | 50.0% |
| TCAGAGAGATGTGGGAAGGT+TGG | - | chr4_3:56592889-56592908 | Msa0649860:intron | 50.0% | |
| ! | AGAGATGTGGGAAGGTTGGT+GGG | - | chr4_3:56592893-56592912 | Msa0649860:intron | 50.0% |
| TGCCGATAGTTTACCCTGTC+GGG | - | chr4_3:56592943-56592962 | Msa0649860:intron | 50.0% | |
| TCCCCGACAGGGTAAACTAT+CGG | + | chr4_3:56592948-56592967 | None:intergenic | 50.0% | |
| CTCATACAAATGCCCGCACT+AGG | - | chr4_3:56592975-56592994 | Msa0649860:intron | 50.0% | |
| ATACAAATGCCCGCACTAGG+AGG | - | chr4_3:56592978-56592997 | Msa0649860:intron | 50.0% | |
| TACGCATAGTCCTCCTAGTG+CGG | + | chr4_3:56592991-56593010 | None:intergenic | 50.0% | |
| AGGACTATGCGTACTTACGG+AGG | - | chr4_3:56592998-56593017 | Msa0649860:intron | 50.0% | |
| ACCCAAACTCCACTGTGGAC+CGG | - | chr4_3:56591203-56591222 | Msa0649860:three_prime_UTR | 55.0% | |
| ACCGGTCCACAGTGGAGTTT+GGG | + | chr4_3:56591207-56591226 | None:intergenic | 55.0% | |
| AACCGGTCCACAGTGGAGTT+TGG | + | chr4_3:56591208-56591227 | None:intergenic | 55.0% | |
| AACTCCACTGTGGACCGGTT+TGG | - | chr4_3:56591208-56591227 | Msa0649860:three_prime_UTR | 55.0% | |
| CCGAAGGCAGGCAGCTATAT+TGG | + | chr4_3:56592308-56592327 | None:intergenic | 55.0% | |
| AGTTTCGCGGTGTGCAAGTG+CGG | - | chr4_3:56592538-56592557 | Msa0649860:intron | 55.0% | |
| AACATTGGAGGTGGTCTGGG+AGG | - | chr4_3:56592567-56592586 | Msa0649860:intron | 55.0% | |
| !! | CGTATTCATGGGATTGGCCG+TGG | - | chr4_3:56592630-56592649 | Msa0649860:intron | 55.0% |
| GAGAGATGTGGGAAGGTTGG+TGG | - | chr4_3:56592892-56592911 | Msa0649860:intron | 55.0% | |
| GCCGATAGTTTACCCTGTCG+GGG | - | chr4_3:56592944-56592963 | Msa0649860:intron | 55.0% | |
| TGAGTTCGTTGTCCCCGACA+GGG | + | chr4_3:56592959-56592978 | None:intergenic | 55.0% | |
| ATGAGTTCGTTGTCCCCGAC+AGG | + | chr4_3:56592960-56592979 | None:intergenic | 55.0% | |
| ACGCATAGTCCTCCTAGTGC+GGG | + | chr4_3:56592990-56593009 | None:intergenic | 55.0% | |
| !! | CACTGTGGACCGGTTTGGAC+CGG | - | chr4_3:56591213-56591232 | Msa0649860:three_prime_UTR | 60.0% |
| !! | ACTGTGGACCGGTTTGGACC+GGG | - | chr4_3:56591214-56591233 | Msa0649860:three_prime_UTR | 60.0% |
| TGAGTCGACCCGGTCCAAAC+CGG | + | chr4_3:56591225-56591244 | None:intergenic | 60.0% | |
| CGGTCCAAACCGGTCCACAG+TGG | + | chr4_3:56591215-56591234 | None:intergenic | 65.0% | |
| ATGGGTCGGGTGAGTCGACC+CGG | + | chr4_3:56591235-56591254 | None:intergenic | 65.0% | |
| GTGCTGCCAGACCCCAGTTC+CGG | - | chr4_3:56592218-56592237 | Msa0649860:five_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 56591145 | 56593342 | 56591145 | ID=Msa0649860;Name=Msa0649860 |
| chr4_3 | mRNA | 56591145 | 56593342 | 56591145 | ID=Msa0649860-mRNA-1;Parent=Msa0649860;Name=Msa0649860-mRNA-1;_AED=0.03;_eAED=0.03;_QI=311|1|1|1|0.66|0.5|4|312|148 |
| chr4_3 | exon | 56591145 | 56591609 | 56591145 | ID=Msa0649860-mRNA-1:exon:14797;Parent=Msa0649860-mRNA-1 |
| chr4_3 | exon | 56591714 | 56591947 | 56591714 | ID=Msa0649860-mRNA-1:exon:14796;Parent=Msa0649860-mRNA-1 |
| chr4_3 | exon | 56592148 | 56592274 | 56592148 | ID=Msa0649860-mRNA-1:exon:14795;Parent=Msa0649860-mRNA-1 |
| chr4_3 | exon | 56593099 | 56593342 | 56593099 | ID=Msa0649860-mRNA-1:exon:14794;Parent=Msa0649860-mRNA-1 |
| chr4_3 | five_prime_UTR | 56593099 | 56593342 | 56593099 | ID=Msa0649860-mRNA-1:five_prime_utr;Parent=Msa0649860-mRNA-1 |
| chr4_3 | five_prime_UTR | 56592208 | 56592274 | 56592208 | ID=Msa0649860-mRNA-1:five_prime_utr;Parent=Msa0649860-mRNA-1 |
| chr4_3 | CDS | 56592148 | 56592207 | 56592148 | ID=Msa0649860-mRNA-1:cds;Parent=Msa0649860-mRNA-1 |
| chr4_3 | CDS | 56591714 | 56591947 | 56591714 | ID=Msa0649860-mRNA-1:cds;Parent=Msa0649860-mRNA-1 |
| chr4_3 | CDS | 56591457 | 56591609 | 56591457 | ID=Msa0649860-mRNA-1:cds;Parent=Msa0649860-mRNA-1 |
| chr4_3 | three_prime_UTR | 56591145 | 56591456 | 56591145 | ID=Msa0649860-mRNA-1:three_prime_utr;Parent=Msa0649860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
