AlfalfaGEDB | Msa0650250

M. sativa cultivar zhongmu-4 / Msa0650250

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0030054 GO:0031625 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0650250	XP_039689311.1	96.644	298	10	0	2	299	540	837	0.0	594

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0650250	sp\|O81833\|SD11_ARATH	63.333	300	108	2	2	299	516	815	1.36e-126	383

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0650250	A0A396IGJ9	96.644	298	10	0	2	299	540	837	0.0	594

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0650250	Msa0708310	0.808177	3.520535e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0650250	MtrunA17_Chr4g0042341	96.644	298	10	0	2	299	540	837	0.0	594
Msa0650250	MtrunA17_Chr4g0042361	88.040	301	33	1	2	299	556	856	0.0	539
Msa0650250	MtrunA17_Chr4g0042391	70.199	302	85	2	3	299	471	772	1.13e-148	435
Msa0650250	MtrunA17_Chr4g0042401	72.368	304	77	3	2	299	521	823	2.60e-148	436
Msa0650250	MtrunA17_Chr4g0042381	69.536	302	87	2	3	299	471	772	9.12e-148	433
Msa0650250	MtrunA17_Chr4g0042351	69.868	302	86	2	3	299	471	772	2.14e-146	429
Msa0650250	MtrunA17_Chr4g0042441	70.100	301	84	2	5	299	520	820	9.72e-145	427
Msa0650250	MtrunA17_Chr8g0361441	66.556	302	97	1	2	299	523	824	6.15e-138	409
Msa0650250	MtrunA17_Chr3g0093161	65.563	302	100	1	2	299	514	815	1.63e-135	403
Msa0650250	MtrunA17_Chr3g0078531	63.265	294	107	1	7	299	549	842	2.65e-126	380

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0650250	AT4G27300.1	63.333	300	108	2	2	299	516	815	1.38e-127	383
Msa0650250	AT4G23180.1	54.575	306	131	3	2	299	364	669	2.01e-115	347
Msa0650250	AT4G27290.1	60.066	303	116	3	2	299	481	783	1.35e-114	348
Msa0650250	AT4G21390.1	58.252	309	114	4	2	299	545	849	1.60e-114	350
Msa0650250	AT4G23270.2	56.908	304	125	3	2	299	342	645	2.01e-114	344
Msa0650250	AT4G23270.1	56.908	304	125	3	2	299	342	645	2.01e-114	344
Msa0650250	AT4G27290.2	60.066	303	116	3	2	299	527	829	3.97e-114	348
Msa0650250	AT4G23270.3	57.525	299	121	3	2	294	342	640	1.21e-113	342
Msa0650250	AT1G11330.1	54.455	303	133	2	2	299	538	840	6.22e-113	345
Msa0650250	AT1G11330.2	54.455	303	133	2	2	299	540	842	7.38e-113	345

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Find 63 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTCAACACCGAAATC+TGG	0.392808	4_3:+57049425	Msa0650250:CDS
AAAATGAAAGCGATTATGCA+GGG	0.614033	4_3:+57049306	None:intergenic
AAATACTTACATAACCAACA+AGG	0.710771	4_3:-57050144	None:intergenic
AAATATTATATGGAAGCGTT+GGG	0.389664	4_3:-57049670	None:intergenic
AAGAACCTGGTTTCTTTCCA+AGG	0.471571	4_3:+57051123	Msa0650250:CDS
AAGAATAAAGGAATCCTGTG+TGG	0.688929	4_3:+57050977	Msa0650250:CDS
AAGAGACTTTCAAGTAACTC+CGG	0.600755	4_3:+57049360	Msa0650250:CDS
AAGCTTCTCGGCTGTTGTGT+TGG	0.464604	4_3:+57049450	Msa0650250:CDS
AATATTATATGGAAGCGTTG+GGG	0.660538	4_3:-57049669	None:intergenic
AATGTGACGCTTAACCTTGT+TGG	0.505065	4_3:+57050130	Msa0650250:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTGCTAGTGTATGAATACA+TGG	+	chr4_3:57049485-57049504	Msa0650250:CDS	30.0%
TACCAAAAATAAAGGAGTCA+AGG	-	chr4_3:57049521-57049540	None:intergenic	30.0%
CAACGCTTCCATATAATATT+TGG	+	chr4_3:57049672-57049691	Msa0650250:CDS	30.0%
CAAAGCAAGTAATGTATTGT+TGG	+	chr4_3:57049758-57049777	Msa0650250:CDS	30.0%
GGAAATACAAATAGAGTAGT+TGG	+	chr4_3:57049849-57049868	Msa0650250:CDS	30.0%
TGCATGTTTGGTATCTTAAT+AGG	+	chr4_3:57050177-57050196	Msa0650250:intron	30.0%
CAATCTTTAACTACCGAAAT+AGG	+	chr4_3:57050300-57050319	Msa0650250:intron	30.0%
GGTAGTTAAAGATCCTATTT+CGG	-	chr4_3:57050316-57050335	None:intergenic	30.0%
TTATTGAAAGATCAAGTCTG+AGG	-	chr4_3:57050363-57050382	None:intergenic	30.0%
CAGACTTGATCTTTCAATAA+TGG	+	chr4_3:57050363-57050382	Msa0650250:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	57049321	57051223	57049321	ID=Msa0650250;Name=Msa0650250
chr4_3	mRNA	57049321	57051223	57049321	ID=Msa0650250-mRNA-1;Parent=Msa0650250;Name=Msa0650250-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0\|0\|0\|1\|1\|1\|4\|0\|299
chr4_3	exon	57049321	57049537	57049321	ID=Msa0650250-mRNA-1:exon:14988;Parent=Msa0650250-mRNA-1
chr4_3	exon	57049640	57049877	57049640	ID=Msa0650250-mRNA-1:exon:14989;Parent=Msa0650250-mRNA-1
chr4_3	exon	57050006	57050156	57050006	ID=Msa0650250-mRNA-1:exon:14990;Parent=Msa0650250-mRNA-1
chr4_3	exon	57050930	57051223	57050930	ID=Msa0650250-mRNA-1:exon:14991;Parent=Msa0650250-mRNA-1
chr4_3	CDS	57049321	57049537	57049321	ID=Msa0650250-mRNA-1:cds;Parent=Msa0650250-mRNA-1
chr4_3	CDS	57049640	57049877	57049640	ID=Msa0650250-mRNA-1:cds;Parent=Msa0650250-mRNA-1
chr4_3	CDS	57050006	57050156	57050006	ID=Msa0650250-mRNA-1:cds;Parent=Msa0650250-mRNA-1
chr4_3	CDS	57050930	57051223	57050930	ID=Msa0650250-mRNA-1:cds;Parent=Msa0650250-mRNA-1

Gene Sequence

>Msa0650250

ATGCAGGGAAAATTAGAAGATGGGCAAGAAATTGCTGTTAAGAGACTTTCAAGTAACTCCGGACAAGGAATTGCCGAGTTCCTAACAGAAGTAAAACTGATTGCAAAACTTCAACACCGAAATCTGGTTAAGCTTCTCGGCTGTTGTGTTGGCGGACAAGAAAAATTGCTAGTGTATGAATACATGGTCAATGGTAGCCTTGACTCCTTTATTTTTGATAAAATAAATGGTAAATTATTGGAGTGGCCCCAACGCTTCCATATAATATTTGGAATTGCTAGGGGACTTGTGTATCTTCATCAAGATTCCCGATTAAGGATTATTCATAGAGATCTCAAAGCAAGTAATGTATTGTTGGATGACATGTTGAATCCAAAAATATCAGATTTTGGAATGGCCAGATCTTTTGGAGGAGATCAGATTGAAGGAAATACAAATAGAGTAGTTGGAACATACGGATACATGGCACCAGAGTATGCAGTTGATGGGCAATTTTCAATCAAATCAGACGTTTTCAGCTTTGGTGTTTTACTATTGGAGATTATATGTGGGAACAAAAATAGAGCACTTTGTCATGGAAATGTGACGCTTAACCTTGTTGGTTATGCATGGGCACTTTGGAAAGAGGGAAAAGCATGGGAGTTGATTGACTCAAGAATAAAGGAATCCTGTGTGGTGTCAGAGGCATCGCGATGCATTCATGTGAGTCTGTTGTGTGTGCAACAATACCCAGAGGATAGGCCTACAATGACATCTGTTGTTCAAATGCTAGGTAGTGAAATGGAACTGGTTGAACCTAAAGAACCTGGTTTCTTTCCAAGGAAAGTTTCTGATGAACCAAATCAGAATGAAATTAGTTCAAATGAAGAATTAACCATTACATCGTTAAATGGACGATGA

Protein sequence

>Msa0650250

MQGKLEDGQEIAVKRLSSNSGQGIAEFLTEVKLIAKLQHRNLVKLLGCCVGGQEKLLVYEYMVNGSLDSFIFDKINGKLLEWPQRFHIIFGIARGLVYLHQDSRLRIIHRDLKASNVLLDDMLNPKISDFGMARSFGGDQIEGNTNRVVGTYGYMAPEYAVDGQFSIKSDVFSFGVLLLEIICGNKNRALCHGNVTLNLVGYAWALWKEGKAWELIDSRIKESCVVSEASRCIHVSLLCVQQYPEDRPTMTSVVQMLGSEMELVEPKEPGFFPRKVSDEPNQNEISSNEELTITSLNGR*