Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0651970 | XP_003608032.1 | 93.421 | 76 | 5 | 0 | 1 | 76 | 22 | 97 | 3.00e-45 | 154 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0651970 | G7JMH5 | 93.421 | 76 | 5 | 0 | 1 | 76 | 22 | 97 | 1.43e-45 | 154 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0055690 | Msa0651970 | 0.806337 | 8.640011e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0651970 | MtrunA17_Chr4g0045304 | 93.421 | 76 | 5 | 0 | 1 | 76 | 41 | 116 | 2.58e-49 | 154 |
| Msa0651970 | MtrunA17_Chr4g0045311 | 93.421 | 76 | 5 | 0 | 1 | 76 | 22 | 97 | 2.76e-49 | 154 |
| Msa0651970 | MtrunA17_Chr4g0045281 | 92.105 | 76 | 6 | 0 | 1 | 76 | 22 | 97 | 4.43e-49 | 153 |
| Msa0651970 | MtrunA17_Chr4g0045284 | 92.105 | 76 | 6 | 0 | 1 | 76 | 21 | 96 | 8.35e-49 | 152 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 27 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTCAACTTGTGGTGAAATT+TGG | 0.236875 | 4_3:-59549414 | Msa0651970:CDS |
| TGTAGCCAAAGTGCCAATTT+TGG | 0.242794 | 4_3:+59553811 | None:intergenic |
| ATGATGATGGTTTCCAAATC+TGG | 0.268044 | 4_3:+59553884 | None:intergenic |
| TTCAATGTTTACAGTTACTA+TGG | 0.298346 | 4_3:-59553958 | None:intergenic |
| CCACCAACAATGATCTTCTT+AGG | 0.298784 | 4_3:+59553837 | None:intergenic |
| TTGTTGGTGGCTCCCAAAAT+TGG | 0.302673 | 4_3:-59553824 | Msa0651970:CDS |
| CCTCAACGATACTCTCGATA+TGG | 0.316599 | 4_3:-59553751 | Msa0651970:intron |
| TTGGCTACAACTACTCAAAC+TGG | 0.330541 | 4_3:-59553797 | Msa0651970:CDS |
| AGTGATTGGTGGTCCAGATT+TGG | 0.341437 | 4_3:-59553897 | Msa0651970:CDS |
| AGAGTATCGTTGAGGTAAAA+AGG | 0.357052 | 4_3:+59553759 | None:intergenic |
| GTAATTTCAACTACAGTGAT+TGG | 0.402924 | 4_3:-59553911 | Msa0651970:CDS |
| AACAAAGACTGGCCCTCCTT+TGG | 0.427169 | 4_3:-59553933 | Msa0651970:CDS |
| GGTGAAATTTGGTATGGAAT+AGG | 0.435800 | 4_3:-59549403 | None:intergenic |
| TCTTATTTATTTGATGATGA+TGG | 0.452058 | 4_3:+59553871 | None:intergenic |
| GGCTCCCAAAATTGGCACTT+TGG | 0.473615 | 4_3:-59553816 | Msa0651970:CDS |
| CAACCTAAGAAGATCATTGT+TGG | 0.510669 | 4_3:-59553840 | Msa0651970:CDS |
| ACTTGTGGTGAAATTTGGTA+TGG | 0.516705 | 4_3:-59549409 | Msa0651970:CDS |
| TCAAACTGGGCTATTAAGAA+TGG | 0.522030 | 4_3:-59553783 | Msa0651970:CDS |
| TTACTATGGCAAACAAAGAC+TGG | 0.533073 | 4_3:-59553944 | Msa0651970:CDS |
| CCTAAGAAGATCATTGTTGG+TGG | 0.583588 | 4_3:-59553837 | Msa0651970:CDS |
| ATTTCAACTACAGTGATTGG+TGG | 0.596924 | 4_3:-59553908 | Msa0651970:CDS |
| GTAGTTGAAATTACCAAAGG+AGG | 0.605063 | 4_3:+59553920 | None:intergenic |
| ACATTTGGAAAGTCAACTTG+TGG | 0.623263 | 4_3:-59549424 | Msa0651970:CDS |
| ACTGTAGTTGAAATTACCAA+AGG | 0.624728 | 4_3:+59553917 | None:intergenic |
| TAGTTGAAATTACCAAAGGA+GGG | 0.639887 | 4_3:+59553921 | None:intergenic |
| TGGCTACAACTACTCAAACT+GGG | 0.652426 | 4_3:-59553796 | Msa0651970:CDS |
| CCATATCGAGAGTATCGTTG+AGG | 0.663371 | 4_3:+59553751 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTCGAAATATAAAAAAT+TGG | - | chr4_3:59551839-59551858 | Msa0651970:intron | 10.0% |
| !!! | GATAAATTTTAGAAATATGT+TGG | - | chr4_3:59549937-59549956 | Msa0651970:intron | 15.0% |
| !!! | ACATTTAATTTGCAATAAAT+AGG | + | chr4_3:59551023-59551042 | None:intergenic | 15.0% |
| !! | TAATTTCTTTCTAATTTCTA+TGG | + | chr4_3:59552837-59552856 | None:intergenic | 15.0% |
| !! | GAAATTACTAAAAACATAAT+TGG | - | chr4_3:59552850-59552869 | Msa0651970:intron | 15.0% |
| !!! | TCTTATTTATTTGATGATGA+TGG | + | chr4_3:59549490-59549509 | None:intergenic | 20.0% |
| !! | TAACCATTATGATAAATTGA+CGG | - | chr4_3:59549863-59549882 | Msa0651970:intron | 20.0% |
| !! | TTATTTAGAAAAGTTTGGAT+TGG | + | chr4_3:59549971-59549990 | None:intergenic | 20.0% |
| !! | CTAGTTTATTTAGAAAAGTT+TGG | + | chr4_3:59549976-59549995 | None:intergenic | 20.0% |
| !!! | TTCACAATAATTGCATTTTA+TGG | + | chr4_3:59550850-59550869 | None:intergenic | 20.0% |
| !!! | TTTGTAAAGAAATTTTAGCT+AGG | - | chr4_3:59551274-59551293 | Msa0651970:intron | 20.0% |
| !!! | AATTTTACCACTAAAGTTAT+AGG | + | chr4_3:59551379-59551398 | None:intergenic | 20.0% |
| !! | ATAACTTTAGTGGTAAAATT+TGG | - | chr4_3:59551379-59551398 | Msa0651970:intron | 20.0% |
| !! | TAACTTTAGTGGTAAAATTT+GGG | - | chr4_3:59551380-59551399 | Msa0651970:intron | 20.0% |
| !! | TAACATAGAATTTAAACCAA+TGG | - | chr4_3:59551625-59551644 | Msa0651970:intron | 20.0% |
| !! | AAAAAAAAAGCTAGTGATTA+GGG | - | chr4_3:59551675-59551694 | Msa0651970:intron | 20.0% |
| !!! | AACTCTAGCTTTTATAATAA+AGG | - | chr4_3:59551716-59551735 | Msa0651970:intron | 20.0% |
| !! | TAATCAGTATTAGAATAAGT+AGG | + | chr4_3:59551913-59551932 | None:intergenic | 20.0% |
| !!! | AGAAGTTTGTATTTTATACA+TGG | - | chr4_3:59552460-59552479 | Msa0651970:intron | 20.0% |
| !! | TTAGCTTCTTCAAAATAATA+AGG | - | chr4_3:59552602-59552621 | Msa0651970:intron | 20.0% |
| !! | CAATAATGCAATCAATAAAA+TGG | - | chr4_3:59552685-59552704 | Msa0651970:intron | 20.0% |
| !! | ATTATATCACTGATATATTC+TGG | - | chr4_3:59552915-59552934 | Msa0651970:intron | 20.0% |
| !! | TACAACAATATATTTGATTG+CGG | - | chr4_3:59553546-59553565 | Msa0651970:intron | 20.0% |
| !! | TTGAATCAGCATAATTTATT+AGG | + | chr4_3:59553604-59553623 | None:intergenic | 20.0% |
| !!! | ATATTTTCAGAAATCACATT+TGG | - | chr4_3:59553919-59553938 | Msa0651970:CDS | 20.0% |
| ! | TATCTCCCTTTATTGTATAT+TGG | - | chr4_3:59549654-59549673 | Msa0651970:intron | 25.0% |
| ! | CTTGACCAATATACAATAAA+GGG | + | chr4_3:59549662-59549681 | None:intergenic | 25.0% |
| ! | ATACCGTCAATTTATCATAA+TGG | + | chr4_3:59549869-59549888 | None:intergenic | 25.0% |
| !!! | ATTTTAGAAATATGTTGGAG+TGG | - | chr4_3:59549942-59549961 | Msa0651970:intron | 25.0% |
| !!! | TTTTAGAAATATGTTGGAGT+GGG | - | chr4_3:59549943-59549962 | Msa0651970:intron | 25.0% |
| !!! | GAATTTGTTTTTAGCTGTTT+GGG | + | chr4_3:59550156-59550175 | None:intergenic | 25.0% |
| ! | CAAATTCGCATAATACTAAA+AGG | - | chr4_3:59550169-59550188 | Msa0651970:intron | 25.0% |
| ! | CTTACCACATACAATAATTT+AGG | + | chr4_3:59550531-59550550 | None:intergenic | 25.0% |
| !!! | AACTGTTTTTCTCTTTAAGA+TGG | + | chr4_3:59550722-59550741 | None:intergenic | 25.0% |
| !!! | ATTTGCACTAATTGCTTTTA+TGG | + | chr4_3:59551229-59551248 | None:intergenic | 25.0% |
| ! | TCTATAGTGGTAAAATTTAG+TGG | - | chr4_3:59551338-59551357 | Msa0651970:intron | 25.0% |
| ! | ATATCTTCCTATAACTTTAG+TGG | - | chr4_3:59551369-59551388 | Msa0651970:intron | 25.0% |
| ! | AACTTTAGTGGTAAAATTTG+GGG | - | chr4_3:59551381-59551400 | Msa0651970:intron | 25.0% |
| ! | GTTTCTGTAGATAAAAATGA+TGG | - | chr4_3:59551432-59551451 | Msa0651970:intron | 25.0% |
| ! | GAAAAAAAAAGCTAGTGATT+AGG | - | chr4_3:59551674-59551693 | Msa0651970:intron | 25.0% |
| ! | AAACTGTAGTCAAATTAATG+TGG | + | chr4_3:59551822-59551841 | None:intergenic | 25.0% |
| ! | AGAATAAGTAGGATTCAAAA+CGG | + | chr4_3:59551902-59551921 | None:intergenic | 25.0% |
| ! | ACCAATCAAATTTAGATTTG+TGG | - | chr4_3:59551970-59551989 | Msa0651970:intron | 25.0% |
| ! | CCAATCAAATTTAGATTTGT+GGG | - | chr4_3:59551971-59551990 | Msa0651970:intron | 25.0% |
| !!! | CTTGTGTTTATTTTGGTTAT+TGG | + | chr4_3:59552014-59552033 | None:intergenic | 25.0% |
| ! | TGTAAAGAACTAATTGATAG+TGG | + | chr4_3:59552209-59552228 | None:intergenic | 25.0% |
| !! | ATAGAAATTAGGTTTGTTCT+TGG | + | chr4_3:59552276-59552295 | None:intergenic | 25.0% |
| ! | TTGAGAAATGGATAGAAATT+AGG | + | chr4_3:59552287-59552306 | None:intergenic | 25.0% |
| !! | ATCAAATTTTCCATGTTTGA+GGG | + | chr4_3:59552365-59552384 | None:intergenic | 25.0% |
| !! | TATCAAATTTTCCATGTTTG+AGG | + | chr4_3:59552366-59552385 | None:intergenic | 25.0% |
| ! | AACATGGAAAATTTGATACA+TGG | - | chr4_3:59552368-59552387 | Msa0651970:intron | 25.0% |
| ! | AAAATTTGATACATGGTGTT+TGG | - | chr4_3:59552375-59552394 | Msa0651970:intron | 25.0% |
| !! | TTTTATACATGGTGTTTGTT+TGG | - | chr4_3:59552471-59552490 | Msa0651970:intron | 25.0% |
| ! | GATAAGTGTTCGTATATATA+CGG | + | chr4_3:59552502-59552521 | None:intergenic | 25.0% |
| !!! | CAAATGTTTTTATACTTGCT+TGG | + | chr4_3:59552711-59552730 | None:intergenic | 25.0% |
| ! | CAAGCAAGTATAAAAACATT+TGG | - | chr4_3:59552709-59552728 | Msa0651970:intron | 25.0% |
| ! | TTTAATTGTCTATCCAATGT+GGG | + | chr4_3:59552769-59552788 | None:intergenic | 25.0% |
| ! | ATTTAATTGTCTATCCAATG+TGG | + | chr4_3:59552770-59552789 | None:intergenic | 25.0% |
| ! | GAAATCTGAATAAAATTGCT+TGG | + | chr4_3:59553055-59553074 | None:intergenic | 25.0% |
| !! | CTTCAAAGTTGCATTATTTT+CGG | - | chr4_3:59553085-59553104 | Msa0651970:intron | 25.0% |
| ! | AAAGAGAAAAACTAAGAAAC+AGG | + | chr4_3:59553236-59553255 | None:intergenic | 25.0% |
| ! | GATTGCATCTTGAATTAATT+AGG | + | chr4_3:59553397-59553416 | None:intergenic | 25.0% |
| !!! | ACAAGATTTTAAGTCCATAA+GGG | - | chr4_3:59553817-59553836 | Msa0651970:CDS | 25.0% |
| TAGTTGAAATTACCAAAGGA+GGG | + | chr4_3:59549440-59549459 | None:intergenic | 30.0% | |
| ACTGTAGTTGAAATTACCAA+AGG | + | chr4_3:59549444-59549463 | None:intergenic | 30.0% | |
| GTAATTTCAACTACAGTGAT+TGG | - | chr4_3:59549447-59549466 | Msa0651970:intron | 30.0% | |
| GCTTGACCAATATACAATAA+AGG | + | chr4_3:59549663-59549682 | None:intergenic | 30.0% | |
| !!! | GTTTTTTCTTCCATTCTTCT+CGG | - | chr4_3:59550058-59550077 | Msa0651970:intron | 30.0% |
| ! | TTTTGTGTTGTAGATGTCAT+TGG | + | chr4_3:59550116-59550135 | None:intergenic | 30.0% |
| !!! | CGAATTTGTTTTTAGCTGTT+TGG | + | chr4_3:59550157-59550176 | None:intergenic | 30.0% |
| TTCGCATAATACTAAAAGGT+AGG | - | chr4_3:59550173-59550192 | Msa0651970:intron | 30.0% | |
| ATGCAAAATATGGTTGAAGA+AGG | + | chr4_3:59550405-59550424 | None:intergenic | 30.0% | |
| !!! | TTATTTTTGTTTAGCGAGGA+CGG | + | chr4_3:59550464-59550483 | None:intergenic | 30.0% |
| !!! | CATGTTATTTTTGTTTAGCG+AGG | + | chr4_3:59550468-59550487 | None:intergenic | 30.0% |
| CCACATACAATAATTTAGGT+TGG | + | chr4_3:59550527-59550546 | None:intergenic | 30.0% | |
| CCAACCTAAATTATTGTATG+TGG | - | chr4_3:59550524-59550543 | Msa0651970:intron | 30.0% | |
| ATTGTATGTGGTAAGACATT+AGG | - | chr4_3:59550536-59550555 | Msa0651970:intron | 30.0% | |
| CATCTTCATGAACATGATAT+TGG | + | chr4_3:59550587-59550606 | None:intergenic | 30.0% | |
| TTATTGCTACTCGAAATTTC+AGG | + | chr4_3:59550894-59550913 | None:intergenic | 30.0% | |
| TAATGCATAATGATTGACAC+AGG | - | chr4_3:59550948-59550967 | Msa0651970:intron | 30.0% | |
| TGCTTTCAATAGGTAGTAAT+TGG | - | chr4_3:59551090-59551109 | Msa0651970:intron | 30.0% | |
| ! | CTTTTATGGCTGCAATAAAT+AGG | + | chr4_3:59551215-59551234 | None:intergenic | 30.0% |
| ATGACTATCGTATTCTATAG+TGG | - | chr4_3:59551325-59551344 | Msa0651970:intron | 30.0% | |
| ACTTTAGTGGTAAAATTTGG+GGG | - | chr4_3:59551382-59551401 | Msa0651970:intron | 30.0% | |
| AAACTCTTAACGATTGCTAA+AGG | + | chr4_3:59551416-59551435 | None:intergenic | 30.0% | |
| ! | AGCATTAACTACGTTTTCAA+TGG | - | chr4_3:59551526-59551545 | Msa0651970:intron | 30.0% |
| CTCATACAGATATGTCATAA+TGG | + | chr4_3:59551552-59551571 | None:intergenic | 30.0% | |
| ATAAATTGTCACAACCAAGT+TGG | + | chr4_3:59551755-59551774 | None:intergenic | 30.0% | |
| CAACAACACTAATATGATTG+AGG | - | chr4_3:59551787-59551806 | Msa0651970:intron | 30.0% | |
| TAATATGATTGAGGTTGCAT+TGG | - | chr4_3:59551796-59551815 | Msa0651970:intron | 30.0% | |
| ATCTAAATTTGATTGGTGTG+AGG | + | chr4_3:59551967-59551986 | None:intergenic | 30.0% | |
| CCCACAAATCTAAATTTGAT+TGG | + | chr4_3:59551974-59551993 | None:intergenic | 30.0% | |
| !!! | TTGTAGTTTTGTTATGCACT+TGG | + | chr4_3:59552071-59552090 | None:intergenic | 30.0% |
| CCATAAATGTTTACCAAGTA+CGG | - | chr4_3:59552141-59552160 | Msa0651970:intron | 30.0% | |
| !!! | GTTTGGTGTTTGGTTTTTAT+TGG | - | chr4_3:59552397-59552416 | Msa0651970:intron | 30.0% |
| !!! | TTTGGTTTTTATTGGTTTCG+AGG | - | chr4_3:59552405-59552424 | Msa0651970:intron | 30.0% |
| !!! | TTGGTTTTTATTGGTTTCGA+GGG | - | chr4_3:59552406-59552425 | Msa0651970:intron | 30.0% |
| ACTTAAAGAGCAACATACAA+AGG | + | chr4_3:59552524-59552543 | None:intergenic | 30.0% | |
| AATAAGGACATACCTAATTG+AGG | - | chr4_3:59552618-59552637 | Msa0651970:intron | 30.0% | |
| CATTATTGCATTTCAACCTA+GGG | + | chr4_3:59552673-59552692 | None:intergenic | 30.0% | |
| ATAAGTGAAAAGATACGCTA+AGG | - | chr4_3:59552802-59552821 | Msa0651970:intron | 30.0% | |
| CCAGAAAAATTATAACCGAT+TGG | + | chr4_3:59553461-59553480 | None:intergenic | 30.0% | |
| ! | CCAATCGGTTATAATTTTTC+TGG | - | chr4_3:59553458-59553477 | Msa0651970:intron | 30.0% |
| TTTGTCCAAGATGAAGTTAT+AGG | + | chr4_3:59553516-59553535 | None:intergenic | 30.0% | |
| ATAACTTCATCTTGGACAAA+TGG | - | chr4_3:59553516-59553535 | Msa0651970:intron | 30.0% | |
| AAATTGCTTCCATTCAATGA+AGG | - | chr4_3:59553650-59553669 | Msa0651970:intron | 30.0% | |
| TGCTAAATCTTTCAATGCAA+AGG | + | chr4_3:59553705-59553724 | None:intergenic | 30.0% | |
| AATTGCACCTAAATGTTTCT+AGG | - | chr4_3:59553727-59553746 | Msa0651970:intron | 30.0% | |
| ! | ATTGCACCTAAATGTTTCTA+GGG | - | chr4_3:59553728-59553747 | Msa0651970:intron | 30.0% |
| ATTTGTCCCTAGAAACATTT+AGG | + | chr4_3:59553737-59553756 | None:intergenic | 30.0% | |
| GACTTAAAATCTTGTGTTGA+AGG | + | chr4_3:59553812-59553831 | None:intergenic | 30.0% | |
| !! | CACAAGATTTTAAGTCCATA+AGG | - | chr4_3:59553816-59553835 | Msa0651970:CDS | 30.0% |
| TTACTATGGCAAACAAAGAC+TGG | - | chr4_3:59549414-59549433 | Msa0651970:CDS | 35.0% | |
| GTAGTTGAAATTACCAAAGG+AGG | + | chr4_3:59549441-59549460 | None:intergenic | 35.0% | |
| ATTTCAACTACAGTGATTGG+TGG | - | chr4_3:59549450-59549469 | Msa0651970:intron | 35.0% | |
| !! | ATGATGATGGTTTCCAAATC+TGG | + | chr4_3:59549477-59549496 | None:intergenic | 35.0% |
| CAACCTAAGAAGATCATTGT+TGG | - | chr4_3:59549518-59549537 | Msa0651970:intron | 35.0% | |
| TCAAACTGGGCTATTAAGAA+TGG | - | chr4_3:59549575-59549594 | Msa0651970:intron | 35.0% | |
| !! | AGAGTATCGTTGAGGTAAAA+AGG | + | chr4_3:59549602-59549621 | None:intergenic | 35.0% |
| TGATTCGATTAACTTCTACG+TGG | + | chr4_3:59550030-59550049 | None:intergenic | 35.0% | |
| GGGAAATTCGAGATTTACTA+AGG | + | chr4_3:59550295-59550314 | None:intergenic | 35.0% | |
| AAATCTCGAATTTCCCATCA+TGG | - | chr4_3:59550299-59550318 | Msa0651970:intron | 35.0% | |
| ATATAAGCTTGAGAATGTCC+TGG | + | chr4_3:59550376-59550395 | None:intergenic | 35.0% | |
| CAAAATATGGTTGAAGAAGG+AGG | + | chr4_3:59550402-59550421 | None:intergenic | 35.0% | |
| ! | TCAACCATATTTTGCATCGT+TGG | - | chr4_3:59550408-59550427 | Msa0651970:intron | 35.0% |
| TGCTACTGTTCGTAAATTCT+TGG | + | chr4_3:59550436-59550455 | None:intergenic | 35.0% | |
| AGAATTTACGAACAGTAGCA+TGG | - | chr4_3:59550436-59550455 | Msa0651970:intron | 35.0% | |
| !! | CATGATATTGGTTGATGAGA+AGG | + | chr4_3:59550575-59550594 | None:intergenic | 35.0% |
| TTCATGAAGATGATGTCATC+TGG | - | chr4_3:59550595-59550614 | Msa0651970:intron | 35.0% | |
| GATGTATTCTCACAACTAAG+TGG | - | chr4_3:59550765-59550784 | Msa0651970:intron | 35.0% | |
| CTGTGATGAAAACATGCTAT+TGG | - | chr4_3:59550989-59551008 | Msa0651970:intron | 35.0% | |
| CAGTCATGAATGCTTTCAAT+AGG | - | chr4_3:59551080-59551099 | Msa0651970:intron | 35.0% | |
| ATGATGGTAAGAGACGATAA+TGG | - | chr4_3:59551448-59551467 | Msa0651970:intron | 35.0% | |
| ATGGTAATCGTTAGGAGTTA+TGG | - | chr4_3:59551493-59551512 | Msa0651970:intron | 35.0% | |
| ATGACATATCTGTATGAGAG+AGG | - | chr4_3:59551554-59551573 | Msa0651970:intron | 35.0% | |
| ! | AAACATAGCCTTGAAACCAA+CGG | - | chr4_3:59551590-59551609 | Msa0651970:intron | 35.0% |
| ATGTATCTAATCTCAGCCAT+TGG | + | chr4_3:59551644-59551663 | None:intergenic | 35.0% | |
| CTGAGATTAGATACATGCTT+AGG | - | chr4_3:59551648-59551667 | Msa0651970:intron | 35.0% | |
| AGATTAGATACATGCTTAGG+AGG | - | chr4_3:59551651-59551670 | Msa0651970:intron | 35.0% | |
| GATTAGATACATGCTTAGGA+GGG | - | chr4_3:59551652-59551671 | Msa0651970:intron | 35.0% | |
| ATTTGTGGGACAAGTATCAA+TGG | - | chr4_3:59551985-59552004 | Msa0651970:intron | 35.0% | |
| !! | GTTGCTGCTTGTGTTTATTT+TGG | + | chr4_3:59552021-59552040 | None:intergenic | 35.0% |
| CCGTACTTGGTAAACATTTA+TGG | + | chr4_3:59552144-59552163 | None:intergenic | 35.0% | |
| ! | CTCAAATTTTCCCTCAAACA+TGG | - | chr4_3:59552352-59552371 | Msa0651970:intron | 35.0% |
| TTGATACATGGTGTTTGGTT+TGG | - | chr4_3:59552380-59552399 | Msa0651970:intron | 35.0% | |
| ACAAAATCCTAGCAAGCATA+AGG | + | chr4_3:59552563-59552582 | None:intergenic | 35.0% | |
| ! | AGGATTTTACCTCCTCAATT+AGG | + | chr4_3:59552633-59552652 | None:intergenic | 35.0% |
| GCATTATTGCATTTCAACCT+AGG | + | chr4_3:59552674-59552693 | None:intergenic | 35.0% | |
| TACAACACTTCAACATTGCT+TGG | + | chr4_3:59552736-59552755 | None:intergenic | 35.0% | |
| ! | ATTGTTGATGGAAGAGATTG+TGG | - | chr4_3:59553170-59553189 | Msa0651970:intron | 35.0% |
| TCTTGAACAAGTTAGAGTCA+AGG | - | chr4_3:59553198-59553217 | Msa0651970:intron | 35.0% | |
| CTTGAACAAGTTAGAGTCAA+GGG | - | chr4_3:59553199-59553218 | Msa0651970:intron | 35.0% | |
| CTTATTTCAACGACACCAAT+CGG | - | chr4_3:59553443-59553462 | Msa0651970:intron | 35.0% | |
| TGCTTCCTATAACTTCATCT+TGG | - | chr4_3:59553508-59553527 | Msa0651970:intron | 35.0% | |
| ! | TGTTGAAGGAGCATAGTTAT+GGG | + | chr4_3:59553798-59553817 | None:intergenic | 35.0% |
| GCAACATATTATCACCCTTA+TGG | + | chr4_3:59553834-59553853 | None:intergenic | 35.0% | |
| ! | ATCAAGAATGTAGGTTCTGA+AGG | + | chr4_3:59553859-59553878 | None:intergenic | 35.0% |
| ATGAGTGCTATCAAGAATGT+AGG | + | chr4_3:59553868-59553887 | None:intergenic | 35.0% | |
| ACATTTGGAAAGTCAACTTG+TGG | - | chr4_3:59553934-59553953 | Msa0651970:CDS | 35.0% | |
| AGTCAACTTGTGGTGAAATT+TGG | - | chr4_3:59553944-59553963 | Msa0651970:CDS | 35.0% | |
| ACTTGTGGTGAAATTTGGTA+TGG | - | chr4_3:59553949-59553968 | Msa0651970:CDS | 35.0% | |
| CCACCAACAATGATCTTCTT+AGG | + | chr4_3:59549524-59549543 | None:intergenic | 40.0% | |
| CCTAAGAAGATCATTGTTGG+TGG | - | chr4_3:59549521-59549540 | Msa0651970:intron | 40.0% | |
| !! | GTAGCCAAAGTGCCAATTTT+GGG | + | chr4_3:59549549-59549568 | None:intergenic | 40.0% |
| !! | TGTAGCCAAAGTGCCAATTT+TGG | + | chr4_3:59549550-59549569 | None:intergenic | 40.0% |
| TTGGCTACAACTACTCAAAC+TGG | - | chr4_3:59549561-59549580 | Msa0651970:intron | 40.0% | |
| TGGCTACAACTACTCAAACT+GGG | - | chr4_3:59549562-59549581 | Msa0651970:intron | 40.0% | |
| TCGATTAACTTCTACGTGGT+AGG | + | chr4_3:59550026-59550045 | None:intergenic | 40.0% | |
| GTAAGAGAAACCGAGAAGAA+TGG | + | chr4_3:59550071-59550090 | None:intergenic | 40.0% | |
| GATCTCTCAGGAAGATGATT+TGG | + | chr4_3:59550214-59550233 | None:intergenic | 40.0% | |
| CAAAGACATCTTGATCTCTC+AGG | + | chr4_3:59550226-59550245 | None:intergenic | 40.0% | |
| TCGGAACGTGTTTGAATTCA+TGG | + | chr4_3:59550253-59550272 | None:intergenic | 40.0% | |
| ATGAATTCAAACACGTTCCG+AGG | - | chr4_3:59550252-59550271 | Msa0651970:intron | 40.0% | |
| AAGCACAAGCTTACCATGAT+GGG | + | chr4_3:59550315-59550334 | None:intergenic | 40.0% | |
| ! | TATCTGGCTCATACGTGATA+AGG | + | chr4_3:59550626-59550645 | None:intergenic | 40.0% |
| TATCACGTATGAGCCAGATA+TGG | - | chr4_3:59550626-59550645 | Msa0651970:intron | 40.0% | |
| ATCACGTATGAGCCAGATAT+GGG | - | chr4_3:59550627-59550646 | Msa0651970:intron | 40.0% | |
| ! | TTTGAAGTTGCTTGTGTGTG+TGG | + | chr4_3:59550653-59550672 | None:intergenic | 40.0% |
| TGAAATGGGGGTGAAAATGT+TGG | - | chr4_3:59550696-59550715 | Msa0651970:intron | 40.0% | |
| ! | ATGGTAAGAGACGATAATGG+TGG | - | chr4_3:59551451-59551470 | Msa0651970:intron | 40.0% |
| ! | TGGTAAGAGACGATAATGGT+GGG | - | chr4_3:59551452-59551471 | Msa0651970:intron | 40.0% |
| GTTAATCTAATCTCAGCCGT+TGG | + | chr4_3:59551609-59551628 | None:intergenic | 40.0% | |
| ! | AATTGTCACAACCAAGTTGG+CGG | + | chr4_3:59551752-59551771 | None:intergenic | 40.0% |
| AGCAGCAACAACAACAATCT+AGG | - | chr4_3:59552032-59552051 | Msa0651970:intron | 40.0% | |
| CACGGGAATAGATTGAGAAA+TGG | + | chr4_3:59552299-59552318 | None:intergenic | 40.0% | |
| ! | ATCATCGAGTGTCTTGTTCA+CGG | + | chr4_3:59552317-59552336 | None:intergenic | 40.0% |
| !! | ATGGTGTTTGGTTTGGTGTT+TGG | - | chr4_3:59552387-59552406 | Msa0651970:intron | 40.0% |
| AGCATAAGGAATGCTAAGCT+AGG | + | chr4_3:59552549-59552568 | None:intergenic | 40.0% | |
| TAGCATTCCTTATGCTTGCT+AGG | - | chr4_3:59552553-59552572 | Msa0651970:intron | 40.0% | |
| AAGGACATACCTAATTGAGG+AGG | - | chr4_3:59552621-59552640 | Msa0651970:intron | 40.0% | |
| GTAAGTTGTATGTCCCACAT+TGG | - | chr4_3:59552753-59552772 | Msa0651970:intron | 40.0% | |
| ! | TGCACGGCTTTTCAAATCAT+AGG | + | chr4_3:59553151-59553170 | None:intergenic | 40.0% |
| TCTCTTCCATCAACAATGCA+CGG | + | chr4_3:59553167-59553186 | None:intergenic | 40.0% | |
| ! | ATCCACTCGTGAACATTTTC+TGG | - | chr4_3:59553262-59553281 | Msa0651970:intron | 40.0% |
| CACAACTATTACGTCTTGTG+CGG | - | chr4_3:59553569-59553588 | Msa0651970:intron | 40.0% | |
| ACAACTATTACGTCTTGTGC+GGG | - | chr4_3:59553570-59553589 | Msa0651970:intron | 40.0% | |
| GATCACTTGCCTTCATTGAA+TGG | + | chr4_3:59553662-59553681 | None:intergenic | 40.0% | |
| AACTCCAGACTGATACCATA+CGG | - | chr4_3:59553770-59553789 | Msa0651970:CDS | 40.0% | |
| ! | GTGTTGAAGGAGCATAGTTA+TGG | + | chr4_3:59553799-59553818 | None:intergenic | 40.0% |
| ! | AGTGATTGGTGGTCCAGATT+TGG | - | chr4_3:59549461-59549480 | Msa0651970:intron | 45.0% |
| !! | TTGTTGGTGGCTCCCAAAAT+TGG | - | chr4_3:59549534-59549553 | Msa0651970:intron | 45.0% |
| !! | CCATATCGAGAGTATCGTTG+AGG | + | chr4_3:59549610-59549629 | None:intergenic | 45.0% |
| CCTCAACGATACTCTCGATA+TGG | - | chr4_3:59549607-59549626 | Msa0651970:intron | 45.0% | |
| TAATGACCCGTGCTACCATA+CGG | - | chr4_3:59549998-59550017 | Msa0651970:intron | 45.0% | |
| !! | CAGGAAGATGATTTGGTTGC+TGG | + | chr4_3:59550207-59550226 | None:intergenic | 45.0% |
| CAAGCACAAGCTTACCATGA+TGG | + | chr4_3:59550316-59550335 | None:intergenic | 45.0% | |
| ATGGTAAGCTTGTGCTTGTG+TGG | - | chr4_3:59550318-59550337 | Msa0651970:intron | 45.0% | |
| AAGCTTGAGAATGTCCTGGT+CGG | + | chr4_3:59550372-59550391 | None:intergenic | 45.0% | |
| GGTGCCAACGATGCAAAATA+TGG | + | chr4_3:59550415-59550434 | None:intergenic | 45.0% | |
| !! | TTTAGGTTGGCACTGCGATT+AGG | + | chr4_3:59550514-59550533 | None:intergenic | 45.0% |
| ATCCTTCTTCCCACCTTTGA+CGG | - | chr4_3:59550672-59550691 | Msa0651970:intron | 45.0% | |
| GACACAGGTATGTCTCTATG+AGG | - | chr4_3:59550963-59550982 | Msa0651970:intron | 45.0% | |
| ! | ATAATGGTGGGAGATGGTAG+TGG | - | chr4_3:59551464-59551483 | Msa0651970:intron | 45.0% |
| ! | GGTAGGTGATGGTAATCGTT+AGG | - | chr4_3:59551485-59551504 | Msa0651970:intron | 45.0% |
| !! | AATCTCAGCCGTTGGTTTCA+AGG | + | chr4_3:59551601-59551620 | None:intergenic | 45.0% |
| GTCCAACAATGACCTACTCT+GGG | - | chr4_3:59552163-59552182 | Msa0651970:intron | 45.0% | |
| TCCAACAATGACCTACTCTG+GGG | - | chr4_3:59552164-59552183 | Msa0651970:intron | 45.0% | |
| ! | TCATCGAGTGTCTTGTTCAC+GGG | + | chr4_3:59552316-59552335 | None:intergenic | 45.0% |
| ACCAAAAACACCCTCCACAA+AGG | + | chr4_3:59552432-59552451 | None:intergenic | 45.0% | |
| ATTTCAACCTAGGGAGTTGC+TGG | + | chr4_3:59552664-59552683 | None:intergenic | 45.0% | |
| GAAAAGCCGTGCATTGTTGA+TGG | - | chr4_3:59553158-59553177 | Msa0651970:intron | 45.0% | |
| !! | TGAACATTTTCTGGCGAGGA+GGG | - | chr4_3:59553271-59553290 | Msa0651970:intron | 45.0% |
| CAACTATTACGTCTTGTGCG+GGG | - | chr4_3:59553571-59553590 | Msa0651970:intron | 45.0% | |
| ! | GTATGGTATCAGTCTGGAGT+TGG | + | chr4_3:59553771-59553790 | None:intergenic | 45.0% |
| GCATAGTTATGGGATCCGTA+TGG | + | chr4_3:59553788-59553807 | None:intergenic | 45.0% | |
| ! | AACAAAGACTGGCCCTCCTT+TGG | - | chr4_3:59549425-59549444 | Msa0651970:CDS | 50.0% |
| GGCTCCCAAAATTGGCACTT+TGG | - | chr4_3:59549542-59549561 | Msa0651970:intron | 50.0% | |
| AATGACCCGTGCTACCATAC+GGG | - | chr4_3:59549999-59550018 | Msa0651970:intron | 50.0% | |
| ATTCAAACACGTTCCGAGGC+AGG | - | chr4_3:59550256-59550275 | Msa0651970:intron | 50.0% | |
| TGAATGCTAGCAACCTGCCT+CGG | + | chr4_3:59550272-59550291 | None:intergenic | 50.0% | |
| TTGTGTGTGTGGCCCATATC+TGG | + | chr4_3:59550642-59550661 | None:intergenic | 50.0% | |
| CCATTTCAGCCGTCAAAGGT+GGG | + | chr4_3:59550684-59550703 | None:intergenic | 50.0% | |
| CCACCTTTGACGGCTGAAAT+GGG | - | chr4_3:59550682-59550701 | Msa0651970:intron | 50.0% | |
| CACCTTTGACGGCTGAAATG+GGG | - | chr4_3:59550683-59550702 | Msa0651970:intron | 50.0% | |
| ACCTTTGACGGCTGAAATGG+GGG | - | chr4_3:59550684-59550703 | Msa0651970:intron | 50.0% | |
| ! | GAGACGATAATGGTGGGAGA+TGG | - | chr4_3:59551458-59551477 | Msa0651970:intron | 50.0% |
| !! | GAGATGGTAGTGGTAGGTGA+TGG | - | chr4_3:59551474-59551493 | Msa0651970:intron | 50.0% |
| GATATTTGCCACCGCCAACT+TGG | - | chr4_3:59551738-59551757 | Msa0651970:intron | 50.0% | |
| GGTCATTGTTGGACCGTACT+TGG | + | chr4_3:59552157-59552176 | None:intergenic | 50.0% | |
| GGTCCAACAATGACCTACTC+TGG | - | chr4_3:59552162-59552181 | Msa0651970:intron | 50.0% | |
| TCCCCAGAGTAGGTCATTGT+TGG | + | chr4_3:59552168-59552187 | None:intergenic | 50.0% | |
| GATCAATCTCTCCCCAGAGT+AGG | + | chr4_3:59552178-59552197 | None:intergenic | 50.0% | |
| ! | ATTGGTTTCGAGGGCCTTTG+TGG | - | chr4_3:59552415-59552434 | Msa0651970:intron | 50.0% |
| !!! | GCCTTTGTGGAGGGTGTTTT+TGG | - | chr4_3:59552428-59552447 | Msa0651970:intron | 50.0% |
| CGCCAGAAAATGTTCACGAG+TGG | + | chr4_3:59553267-59553286 | None:intergenic | 50.0% | |
| !! | CTCGTGAACATTTTCTGGCG+AGG | - | chr4_3:59553267-59553286 | Msa0651970:intron | 50.0% |
| !! | GTGAACATTTTCTGGCGAGG+AGG | - | chr4_3:59553270-59553289 | Msa0651970:intron | 50.0% |
| GGATCCGTATGGTATCAGTC+TGG | + | chr4_3:59553777-59553796 | None:intergenic | 50.0% | |
| TAGGACCCGTATGGTAGCAC+GGG | + | chr4_3:59550007-59550026 | None:intergenic | 55.0% | |
| GTAGGACCCGTATGGTAGCA+CGG | + | chr4_3:59550008-59550027 | None:intergenic | 55.0% | |
| TCTACGTGGTAGGACCCGTA+TGG | + | chr4_3:59550016-59550035 | None:intergenic | 55.0% | |
| TCCTGGTCGGATTCAACGAG+GGG | + | chr4_3:59550359-59550378 | None:intergenic | 55.0% | |
| GTCCTGGTCGGATTCAACGA+GGG | + | chr4_3:59550360-59550379 | None:intergenic | 55.0% | |
| TGTCCTGGTCGGATTCAACG+AGG | + | chr4_3:59550361-59550380 | None:intergenic | 55.0% | |
| AGCCGTCAAAGGTGGGAAGA+AGG | + | chr4_3:59550677-59550696 | None:intergenic | 55.0% | |
| CCCACCTTTGACGGCTGAAA+TGG | - | chr4_3:59550681-59550700 | Msa0651970:intron | 55.0% | |
| CCCATTTCAGCCGTCAAAGG+TGG | + | chr4_3:59550685-59550704 | None:intergenic | 55.0% | |
| ACCCCCATTTCAGCCGTCAA+AGG | + | chr4_3:59550688-59550707 | None:intergenic | 55.0% | |
| !! | TGGTGGGAGATGGTAGTGGT+AGG | - | chr4_3:59551468-59551487 | Msa0651970:intron | 55.0% |
| ! | TGTCACAACCAAGTTGGCGG+TGG | + | chr4_3:59551749-59551768 | None:intergenic | 55.0% |
| GTTTCGAGGGCCTTTGTGGA+GGG | - | chr4_3:59552419-59552438 | Msa0651970:intron | 55.0% | |
| TTGCAGACCAGCAACTCCCT+AGG | - | chr4_3:59552654-59552673 | Msa0651970:intron | 55.0% | |
| GCAGACTGACTGATCGTGTC+TGG | - | chr4_3:59553360-59553379 | Msa0651970:intron | 55.0% | |
| TCCCCTCGTTGAATCCGACC+AGG | - | chr4_3:59550355-59550374 | Msa0651970:intron | 60.0% | |
| GGTTTCGAGGGCCTTTGTGG+AGG | - | chr4_3:59552418-59552437 | Msa0651970:intron | 60.0% | |
| ! | GGGAGTTGCTGGTCTGCAAG+AGG | + | chr4_3:59552653-59552672 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 59549404 | 59553976 | 59549404 | ID=Msa0651970;Name=Msa0651970 |
| chr4_3 | mRNA | 59549404 | 59553976 | 59549404 | ID=Msa0651970-mRNA-1;Parent=Msa0651970;Name=Msa0651970-mRNA-1;_AED=0.51;_eAED=0.51;_QI=0|0|0|0.5|0|0|2|0|90 |
| chr4_3 | exon | 59553752 | 59553976 | 59553752 | ID=Msa0651970-mRNA-1:exon:15971;Parent=Msa0651970-mRNA-1 |
| chr4_3 | exon | 59549404 | 59549451 | 59549404 | ID=Msa0651970-mRNA-1:exon:15970;Parent=Msa0651970-mRNA-1 |
| chr4_3 | CDS | 59553752 | 59553976 | 59553752 | ID=Msa0651970-mRNA-1:cds;Parent=Msa0651970-mRNA-1 |
| chr4_3 | CDS | 59549404 | 59549451 | 59549404 | ID=Msa0651970-mRNA-1:cds;Parent=Msa0651970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
