AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0652370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0652370 MtrunA17_Chr4g0045951 98.077 364 7 0 1 364 1 364 0.0 746
Msa0652370 MtrunA17_Chr4g0045941 82.143 364 53 1 1 364 1 352 0.0 621
Msa0652370 MtrunA17_Chr2g0283581 72.191 356 93 3 14 364 6 360 0.0 540
Msa0652370 MtrunA17_Chr2g0325481 60.308 325 128 1 38 362 43 366 3.06e-151 431
Msa0652370 MtrunA17_Chr4g0041011 60.815 319 124 1 45 363 47 364 6.85e-145 414
Msa0652370 MtrunA17_Chr3g0097891 52.089 359 155 4 8 362 5 350 7.06e-135 388
Msa0652370 MtrunA17_Chr2g0314801 52.355 361 157 7 1 358 1 349 6.63e-132 381
Msa0652370 MtrunA17_Chr3g0085071 51.863 322 153 2 43 363 44 364 9.04e-126 366
Msa0652370 MtrunA17_Chr3g0091031 51.402 321 154 2 44 363 30 349 1.55e-123 360
Msa0652370 MtrunA17_Chr5g0413851 49.862 363 171 5 3 362 5 359 2.08e-123 360
Msa0652370 MtrunA17_Chr3g0085081 49.412 340 170 2 25 363 11 349 1.07e-122 357
Msa0652370 MtrunA17_Chr5g0430371 48.179 357 159 5 31 362 44 399 3.05e-116 343
Msa0652370 MtrunA17_Chr3g0105301 49.701 334 152 4 45 362 43 376 1.57e-115 340
Msa0652370 MtrunA17_Chr2g0314791 48.624 327 149 7 45 362 29 345 3.61e-107 318
Msa0652370 MtrunA17_Chr1g0175671 40.517 348 183 6 40 364 165 511 2.36e-96 296
Msa0652370 MtrunA17_Chr7g0258851 40.517 348 183 6 40 364 243 589 4.31e-93 290
Msa0652370 MtrunA17_Chr4g0068111 40.110 364 189 9 25 362 93 453 1.02e-88 275
Msa0652370 MtrunA17_Chr1g0171171 38.978 372 200 7 8 362 14 375 1.27e-86 266
Msa0652370 MtrunA17_Chr4g0071391 36.919 344 195 6 42 364 106 448 1.26e-82 258
Msa0652370 MtrunA17_Chr1g0213281 38.081 344 188 7 43 362 173 515 9.38e-82 258
Msa0652370 MtrunA17_Chr1g0210771 38.529 340 185 8 38 362 52 382 1.21e-81 254
Msa0652370 MtrunA17_Chr8g0368461 36.932 352 187 6 45 362 178 528 4.48e-81 257
Msa0652370 MtrunA17_Chr5g0413271 36.937 333 194 5 45 362 145 476 5.00e-80 253
Msa0652370 MtrunA17_Chr4g0006991 36.842 342 192 7 45 362 86 427 4.30e-75 238
Msa0652370 MtrunA17_Chr7g0269991 37.082 329 190 6 45 358 137 463 1.45e-74 238
Msa0652370 MtrunA17_Chr4g0005491 32.737 391 234 10 1 362 17 407 5.15e-73 232
Msa0652370 MtrunA17_Chr3g0113671 35.777 341 193 7 44 358 105 445 4.08e-72 231
Msa0652370 MtrunA17_Chr3g0114101 35.380 342 197 7 45 362 89 430 1.66e-70 226
Msa0652370 MtrunA17_Chr3g0126021 38.279 337 183 7 45 362 129 459 1.13e-68 223
Msa0652370 MtrunA17_Chr7g0243301 33.773 379 220 10 15 362 31 409 1.51e-68 221
Msa0652370 MtrunA17_Chr5g0437291 35.465 344 193 8 44 358 164 507 2.11e-68 223
Msa0652370 MtrunA17_Chr8g0360521 35.311 354 200 9 33 362 61 409 4.37e-68 220
Msa0652370 MtrunA17_Chr1g0209921 44.958 238 124 6 33 266 32 266 4.92e-68 215
Msa0652370 MtrunA17_Chr7g0259711 35.244 349 192 8 43 362 89 432 7.69e-66 215
Msa0652370 MtrunA17_Chr4g0005481 33.521 355 211 7 27 358 90 442 7.81e-66 215
Msa0652370 MtrunA17_Chr2g0287901 33.235 340 202 6 45 360 97 435 4.43e-65 213
Msa0652370 MtrunA17_Chr7g0242701 35.673 342 196 7 45 362 86 427 6.55e-65 212
Msa0652370 MtrunA17_Chr5g0437601 33.058 363 209 9 34 362 62 424 6.61e-64 209
Msa0652370 MtrunA17_Chr8g0384151 33.631 336 202 6 42 362 87 416 7.61e-62 204
Msa0652370 MtrunA17_Chr1g0178081 31.624 351 161 10 36 362 46 341 6.52e-47 163
Msa0652370 MtrunA17_Chr5g0414061 30.484 351 209 12 36 355 85 431 1.14e-40 148
Msa0652370 MtrunA17_Chr6g0456681 31.620 389 225 13 7 358 20 404 2.68e-39 144
Msa0652370 MtrunA17_Chr6g0456691 29.014 355 212 9 42 364 75 421 2.52e-37 139
Msa0652370 MtrunA17_Chr5g0414091 30.508 354 213 10 33 355 73 424 1.15e-36 137
Msa0652370 MtrunA17_Chr3g0085101 55.455 110 48 1 229 337 1 110 7.69e-36 126
Msa0652370 MtrunA17_Chr5g0414051 29.082 392 224 15 10 358 36 416 2.38e-35 134
Msa0652370 MtrunA17_Chr4g0049421 26.934 349 220 11 45 362 48 392 5.87e-34 129
Msa0652370 MtrunA17_Chr6g0476041 28.977 352 210 14 42 358 164 510 8.22e-34 131
Msa0652370 MtrunA17_Chr6g0451321 30.387 362 214 15 32 362 103 457 1.61e-33 129
Msa0652370 MtrunA17_Chr8g0384421 30.145 345 209 13 45 362 133 472 3.55e-32 125
Msa0652370 MtrunA17_Chr7g0226991 28.969 359 219 11 32 358 44 398 1.17e-31 123
Msa0652370 MtrunA17_Chr1g0188191 28.857 350 207 13 45 358 234 577 6.51e-31 123
Msa0652370 MtrunA17_Chr3g0140371 29.310 348 207 13 43 358 16 356 6.56e-31 120
Msa0652370 MtrunA17_Chr8g0347321 27.103 428 220 18 7 363 34 440 9.19e-31 121
Msa0652370 MtrunA17_Chr4g0070341 30.833 360 207 15 38 362 119 471 1.41e-30 121
Msa0652370 MtrunA17_Chr5g0414041 27.920 351 208 11 45 358 87 429 2.43e-30 120
Msa0652370 MtrunA17_Chr8g0391481 27.688 372 233 11 19 358 1 368 2.46e-30 119
Msa0652370 MtrunA17_Chr2g0283851 27.933 358 209 13 46 364 56 403 6.93e-30 118
Msa0652370 MtrunA17_Chr8g0387921 25.507 345 223 9 45 358 74 415 1.76e-26 109
Msa0652370 MtrunA17_Chr6g0455901 28.371 356 213 15 41 358 61 412 2.29e-25 106
Msa0652370 MtrunA17_Chr1g0209931 53.409 88 37 2 276 362 8 92 2.26e-22 90.5
Msa0652370 MtrunA17_Chr7g0221271 33.077 130 87 0 42 171 76 205 9.21e-21 89.4
Msa0652370 MtrunA17_Chr5g0429211 50.000 88 42 2 91 177 187 273 1.09e-19 87.8
Msa0652370 MtrunA17_Chr7g0221291 40.449 89 53 0 45 133 79 167 5.23e-19 83.6
Msa0652370 MtrunA17_Chr2g0287931 29.600 125 74 3 105 215 2 126 1.20e-13 67.4
Msa0652370 MtrunA17_Chr5g0429191 57.778 45 10 1 320 355 1 45 1.96e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0652370 AT1G29050.1 64.183 349 123 2 17 364 33 380 1.23e-174 491
Msa0652370 AT2G34070.1 65.455 330 111 3 37 364 57 385 1.50e-167 473
Msa0652370 AT2G42570.1 58.282 326 136 0 37 362 39 364 9.75e-148 422
Msa0652370 AT2G31110.2 53.371 356 159 1 8 363 15 363 3.16e-146 418
Msa0652370 AT3G14850.2 55.205 317 139 2 45 358 34 350 4.88e-131 379
Msa0652370 AT2G34070.2 66.270 252 82 3 115 364 1 251 1.10e-122 354
Msa0652370 AT1G78710.1 50.307 326 157 4 40 362 33 356 1.95e-122 357
Msa0652370 AT2G30900.1 49.020 357 175 5 11 362 11 365 1.39e-121 355
Msa0652370 AT5G58600.1 49.258 337 154 5 43 362 64 400 1.53e-109 326
Msa0652370 AT2G30010.1 44.915 354 166 6 38 362 43 396 1.77e-100 303
Msa0652370 AT2G30010.2 44.915 354 166 6 38 362 86 439 4.08e-100 303
Msa0652370 AT3G14850.1 55.466 247 107 2 115 358 1 247 9.41e-100 296
Msa0652370 AT2G31110.3 51.969 254 115 1 8 261 15 261 9.45e-98 291
Msa0652370 AT5G06700.1 39.943 348 185 6 40 364 250 596 2.26e-91 286
Msa0652370 AT2G31110.1 58.173 208 87 0 156 363 8 215 3.26e-91 273
Msa0652370 AT3G12060.1 38.070 373 204 6 16 362 164 535 7.04e-88 275
Msa0652370 AT1G78710.2 42.025 326 131 5 40 362 26 296 8.19e-88 267
Msa0652370 AT5G20590.1 37.752 347 193 6 40 364 136 481 9.90e-85 265
Msa0652370 AT2G30900.2 49.407 253 124 3 11 261 11 261 1.61e-84 258
Msa0652370 AT3G54260.1 40.120 334 174 8 45 362 51 374 1.66e-84 261
Msa0652370 AT1G60790.1 36.517 356 199 8 33 362 178 532 1.19e-79 254
Msa0652370 AT5G49340.1 36.620 355 185 8 40 362 95 441 5.26e-79 249
Msa0652370 AT5G01360.2 37.176 347 189 8 43 362 34 378 1.05e-78 246
Msa0652370 AT5G58600.2 51.327 226 108 2 43 266 64 289 2.45e-78 243
Msa0652370 AT5G01360.1 37.176 347 189 8 43 362 90 434 3.44e-78 247
Msa0652370 AT3G62390.1 35.882 340 198 6 37 358 130 467 2.40e-76 243
Msa0652370 AT3G11030.1 37.069 348 194 10 40 362 101 448 9.43e-70 226
Msa0652370 AT5G06230.2 35.000 360 200 9 33 362 9 364 9.68e-70 223
Msa0652370 AT5G19160.1 33.744 406 209 11 5 360 47 442 1.05e-69 226
Msa0652370 AT5G06230.1 35.000 360 200 9 33 362 50 405 1.37e-69 224
Msa0652370 AT1G73140.1 34.711 363 210 8 24 362 46 405 5.27e-69 223
Msa0652370 AT5G01620.2 34.195 348 203 8 35 358 100 445 6.47e-68 221
Msa0652370 AT5G01620.1 34.195 348 203 8 35 358 100 445 6.47e-68 221
Msa0652370 AT5G01620.3 34.195 348 203 8 35 358 108 453 7.26e-68 221
Msa0652370 AT2G40150.1 33.884 363 208 8 28 358 54 416 4.79e-67 218
Msa0652370 AT3G06080.2 34.012 344 200 7 43 360 101 443 1.28e-66 218
Msa0652370 AT3G55990.1 34.897 341 194 8 45 358 140 479 1.34e-66 218
Msa0652370 AT2G40160.2 34.349 361 186 10 42 362 74 423 1.57e-66 217
Msa0652370 AT1G48880.1 35.258 329 190 6 45 358 115 435 2.08e-66 217
Msa0652370 AT2G40160.1 34.358 358 184 10 42 359 74 420 2.21e-66 216
Msa0652370 AT2G40320.1 35.632 348 198 8 40 362 76 422 3.66e-66 215
Msa0652370 AT3G11570.1 35.077 325 189 6 59 362 96 419 7.70e-65 212
Msa0652370 AT2G38320.1 32.659 346 205 8 45 362 59 404 4.80e-63 207
Msa0652370 AT5G20590.2 35.802 243 142 4 40 268 136 378 2.05e-54 183
Msa0652370 AT2G38320.2 31.153 321 194 7 69 362 1 321 4.28e-54 181
Msa0652370 AT3G62390.2 34.286 245 149 3 37 269 130 374 1.81e-52 179
Msa0652370 AT5G19160.2 31.773 299 160 6 5 268 47 336 4.24e-50 171
Msa0652370 AT5G06230.3 33.203 256 151 4 33 268 50 305 8.53e-46 159
Msa0652370 AT2G40160.3 33.603 247 132 6 42 266 74 310 9.59e-46 159
Msa0652370 AT3G06080.1 32.083 240 149 3 43 268 101 340 4.07e-45 158
Msa0652370 AT5G64470.3 30.925 346 208 12 45 363 55 396 5.18e-40 146
Msa0652370 AT5G64470.2 30.878 353 205 14 45 363 55 402 1.31e-38 142
Msa0652370 AT1G70230.1 27.273 352 203 10 45 362 79 411 2.52e-35 134
Msa0652370 AT4G25360.1 30.028 353 203 13 44 358 174 520 6.13e-35 134
Msa0652370 AT4G25360.2 30.028 353 203 13 44 358 174 520 6.13e-35 134
Msa0652370 AT3G28150.1 28.030 396 246 15 1 362 20 410 2.78e-34 131
Msa0652370 AT1G01430.1 27.794 349 213 10 45 358 99 443 1.71e-33 129
Msa0652370 AT5G64020.1 28.492 358 210 12 45 362 57 408 4.25e-33 127
Msa0652370 AT5G15900.1 29.310 348 215 9 43 362 65 409 5.34e-33 127
Msa0652370 AT5G15900.2 29.226 349 214 10 43 362 84 428 7.31e-33 127
Msa0652370 AT5G51640.1 28.693 352 208 10 45 358 138 484 1.65e-32 127
Msa0652370 AT5G15890.1 28.032 371 221 12 23 358 159 518 1.73e-32 127
Msa0652370 AT3G02440.1 26.957 345 214 10 45 358 127 464 1.37e-31 124
Msa0652370 AT3G02440.2 26.957 345 214 10 45 358 135 472 1.47e-31 124
Msa0652370 AT2G37720.1 28.184 369 215 12 30 362 128 482 2.65e-31 124
Msa0652370 AT4G01080.1 26.221 389 244 12 6 358 45 426 8.84e-30 119
Msa0652370 AT5G20680.6 28.035 346 215 12 45 362 118 457 9.95e-30 119
Msa0652370 AT2G14530.1 28.827 392 233 16 11 362 21 406 1.06e-29 118
Msa0652370 AT5G20680.4 28.035 346 215 12 45 362 212 551 1.60e-29 119
Msa0652370 AT5G20680.1 28.035 346 215 12 45 362 212 551 1.60e-29 119
Msa0652370 AT5G20680.3 28.035 346 215 12 45 362 212 551 1.60e-29 119
Msa0652370 AT5G20680.5 28.035 346 215 12 45 362 212 551 1.60e-29 119
Msa0652370 AT5G20680.2 28.035 346 215 12 45 362 194 533 1.83e-29 119
Msa0652370 AT4G23790.1 28.045 353 209 16 41 355 75 420 1.97e-26 109
Msa0652370 AT4G11090.1 26.667 360 209 14 41 358 75 421 4.90e-26 108
Msa0652370 AT5G64470.4 29.317 249 154 8 45 274 55 300 1.51e-22 97.1
Msa0652370 AT5G64470.1 29.317 249 154 8 45 274 55 300 1.70e-22 97.1

Find 117 sgRNAs with CRISPR-Local

Find 404 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATGCCTTACCAGCATTTA+TGG 0.069415 4_3:-60097034 None:intergenic
GAAATTTAGAGGGTTGTTTA+TGG 0.216367 4_3:-60091277 None:intergenic
GGTAGAGCCGCCGGATATTT+TGG 0.236813 4_3:-60097884 None:intergenic
ACTATACCGTACACCATATT+TGG 0.252473 4_3:+60096966 Msa0652370:CDS
ACAAAATTAGTGCCAGATAA+AGG 0.274759 4_3:-60091428 None:intergenic
TATTTAAGATACTGATTATC+AGG 0.276183 4_3:-60091798 None:intergenic
ACCCTCAAAATAGGACAATA+TGG 0.292650 4_3:+60091539 Msa0652370:exon
AGGGGTTTCATGGATGGATT+AGG 0.309360 4_3:-60091352 None:intergenic
AGGAGTATGTTCCAAGTATC+AGG 0.318771 4_3:-60098070 None:intergenic
TTCTCTGGTAGTTGGGTGAT+TGG 0.321358 4_3:+60091699 Msa0652370:CDS
ACATTGTTAGAGCTGCATTT+AGG 0.323362 4_3:-60098090 None:intergenic
ATTGAGTTTGAGGGGTTTCA+TGG 0.329709 4_3:-60091362 None:intergenic
TTGAAAGAAGACTTTAGTTT+TGG 0.332563 4_3:-60097670 None:intergenic
GAGAGGATTTCTTGAATAGA+TGG 0.342001 4_3:+60092313 Msa0652370:CDS
CTCCATGTGAACCCTTTATC+TGG 0.356145 4_3:+60091416 Msa0652370:five_prime_UTR
AGGTATGGTTTGAAATTTAG+AGG 0.358769 4_3:-60091288 None:intergenic
TGAATTATGTCCACCAAATA+TGG 0.363768 4_3:-60096979 None:intergenic
GGGAGAAATCAAAATCAAAA+TGG 0.363991 4_3:-60091256 None:intergenic
AAATTTAGAGGGTTGTTTAT+GGG 0.364925 4_3:-60091276 None:intergenic
GATGATACTGCGCAGGACTA+TGG 0.367889 4_3:+60096931 Msa0652370:intron
CCCTTGTGAATCTCCCTTGT+GGG 0.370003 4_3:-60097100 None:intergenic
AACAATTGTAATTTGTTCTC+TGG 0.377014 4_3:+60091684 Msa0652370:CDS
AAAACTAAAGTCTTCTTTCA+AGG 0.379151 4_3:+60097672 Msa0652370:CDS
GTCCATGTCCTTCACTAGAT+TGG 0.379697 4_3:-60097580 None:intergenic
ATCAGTATCTTAAATACTCT+TGG 0.387106 4_3:+60091805 Msa0652370:CDS
GAAAAGCTTGTAGTGGCATT+TGG 0.390200 4_3:-60092420 None:intergenic
ATAAAGTGAGTCCTTCAAAA+AGG 0.390264 4_3:+60091649 Msa0652370:CDS
CTGTTCACTACATCAGCTTC+AGG 0.395072 4_3:-60097908 None:intergenic
CTCGGTAAAGCACATGAATC+AGG 0.398275 4_3:-60091831 None:intergenic
GTGACTTTGTTGCTCCTACT+AGG 0.412225 4_3:-60091626 None:intergenic
CTAGTTGGTCATGTATATAT+AGG 0.413634 4_3:-60091466 None:intergenic
TCCTTGGTTCATTCCAATCC+CGG 0.414536 4_3:-60097826 None:intergenic
CAAAATTAGTGCCAGATAAA+GGG 0.417130 4_3:-60091427 None:intergenic
GTAATTTGTTCTCTGGTAGT+TGG 0.418151 4_3:+60091691 Msa0652370:CDS
ATTGACCACTTGGGCTGGAT+GGG 0.420395 4_3:+60097626 Msa0652370:CDS
TACCAGGACTGCCTGATACT+TGG 0.423147 4_3:+60098059 Msa0652370:CDS
TTTGTATGTTATGTTCTAGT+TGG 0.425172 4_3:-60091481 None:intergenic
AGTGAAGGACATGGACCGTT+TGG 0.425551 4_3:+60097587 Msa0652370:CDS
AGCGAAGTTGAACCAGTACC+TGG 0.430341 4_3:+60097860 Msa0652370:CDS
AATAGTGAATTAGTAATATA+TGG 0.431325 4_3:-60091322 None:intergenic
TAATTTGTTCTCTGGTAGTT+GGG 0.435474 4_3:+60091692 Msa0652370:CDS
TTGAATTTAGGGGCCGGGAT+TGG 0.451299 4_3:+60097813 Msa0652370:intron
AGTTTGAGGGGTTTCATGGA+TGG 0.452668 4_3:-60091358 None:intergenic
TCGCTGCTACATGTCTTCCT+TGG 0.458734 4_3:-60097842 None:intergenic
AGTACCTGGGCCAAAATATC+CGG 0.461818 4_3:+60097874 Msa0652370:CDS
ATCAAATTGAGCTTCTAAGA+AGG 0.462973 4_3:-60091757 None:intergenic
CTCTCACAACTAAGAAAAGA+TGG 0.463426 4_3:+60097980 Msa0652370:CDS
TTTATAAGGGATTGACCACT+TGG 0.465985 4_3:+60097616 Msa0652370:CDS
TCCATGTCCTTCACTAGATT+GGG 0.466334 4_3:-60097579 None:intergenic
TGGTAAGGCATGGATTGATA+TGG 0.472637 4_3:+60097044 Msa0652370:CDS
AAGGGATTGACCACTTGGGC+TGG 0.475375 4_3:+60097621 Msa0652370:CDS
GATTGACCACTTGGGCTGGA+TGG 0.486358 4_3:+60097625 Msa0652370:CDS
GACATAATTCAGCAAGGTGT+TGG 0.489161 4_3:+60096991 Msa0652370:CDS
GCATGGACACAAGGAGAGCT+AGG 0.489260 4_3:-60091602 None:intergenic
TGATCCTTAGTATAGATAGA+AGG 0.491156 4_3:-60098007 None:intergenic
TGGTGTACGGTATAGTTGTA+TGG 0.491607 4_3:-60096959 None:intergenic
TTACTTACTGATAATGAGTA+GGG 0.493377 4_3:-60097701 None:intergenic
TGTAGTCACTGGTGCCTACC+AGG 0.495236 4_3:+60098043 Msa0652370:CDS
TCTCCTTGAATTTAGGGGCC+GGG 0.496773 4_3:+60097808 Msa0652370:intron
CCCTCAAAATAGGACAATAT+GGG 0.504487 4_3:+60091540 Msa0652370:exon
GTCTTGTATGATTCATGCAT+CGG 0.506970 4_3:+60092395 Msa0652370:CDS
TTCCAAGTATCAGGCAGTCC+TGG 0.510676 4_3:-60098061 None:intergenic
GTTGAAGAACATGAAGAAGC+AGG 0.517556 4_3:+60097934 Msa0652370:CDS
ACATCCTTCTATCTATACTA+AGG 0.519367 4_3:+60098003 Msa0652370:CDS
CTTGAAGAATAGATCACAAA+GGG 0.522893 4_3:+60098166 Msa0652370:intron
GAGCTAGGGTAAAGTAAGAG+AGG 0.527241 4_3:-60091587 None:intergenic
ACCCTTGTGAATCTCCCTTG+TGG 0.528579 4_3:-60097101 None:intergenic
CTTGTGTCCATGCACCTAGT+AGG 0.531771 4_3:+60091612 Msa0652370:CDS
TCTTCAACTCGTGGCATTGG+TGG 0.531876 4_3:+60097076 Msa0652370:CDS
GTGGTGTAGGTTCAATGGAG+AGG 0.533053 4_3:+60092296 Msa0652370:intron
CCATAAATGCTGGTAAGGCA+TGG 0.534524 4_3:+60097034 Msa0652370:CDS
GGACTCCATAAATGCTGGTA+AGG 0.535572 4_3:+60097029 Msa0652370:CDS
GTTACTTACTGATAATGAGT+AGG 0.541324 4_3:-60097702 None:intergenic
TGATCTTCAACTCGTGGCAT+TGG 0.543555 4_3:+60097073 Msa0652370:CDS
GGATTTCTTGAATAGATGGA+AGG 0.551240 4_3:+60092317 Msa0652370:CDS
GGTATGGTTTGAAATTTAGA+GGG 0.551419 4_3:-60091287 None:intergenic
ATCTATACTAAGGATCATAC+AGG 0.552576 4_3:+60098013 Msa0652370:CDS
TCAAATTGAGCTTCTAAGAA+GGG 0.554679 4_3:-60091756 None:intergenic
ATACCGTACACCATATTTGG+TGG 0.560969 4_3:+60096969 Msa0652370:CDS
CCTTATAAAATGCATCCAAA+CGG 0.562648 4_3:-60097602 None:intergenic
TTTCCTAGAAAAGCTTGTAG+TGG 0.565679 4_3:-60092427 None:intergenic
ACGCTGGACTCCATAAATGC+TGG 0.566630 4_3:+60097024 Msa0652370:CDS
TGTTGCTCCTACTAGGTGCA+TGG 0.574098 4_3:-60091619 None:intergenic
GCTTCAGGAGGTAGAGCCGC+CGG 0.574136 4_3:-60097893 None:intergenic
CTACTAGGTGCATGGACACA+AGG 0.574608 4_3:-60091611 None:intergenic
ATTCATTGAGTCTAAACATG+TGG 0.578501 4_3:+60092364 Msa0652370:CDS
AATGGTACTACATTATTGAG+TGG 0.579297 4_3:-60091238 None:intergenic
GATTTCTTGAATAGATGGAA+GGG 0.585935 4_3:+60092318 Msa0652370:CDS
TGCCAGATAAAGGGTTCACA+TGG 0.587543 4_3:-60091418 None:intergenic
TAAAGGGTTCACATGGAGGA+TGG 0.595742 4_3:-60091411 None:intergenic
TGTCCACCAAATATGGTGTA+CGG 0.595920 4_3:-60096972 None:intergenic
GTGGCATTGGTGGACCCACA+AGG 0.596003 4_3:+60097086 Msa0652370:CDS
CAGGCAATGACTGTAGTCAC+TGG 0.602552 4_3:+60098032 Msa0652370:CDS
CAAATTGAGCTTCTAAGAAG+GGG 0.603987 4_3:-60091755 None:intergenic
TTCATTGAGTCTAAACATGT+GGG 0.609808 4_3:+60092365 Msa0652370:CDS
AAGTATCAGGCAGTCCTGGT+AGG 0.610731 4_3:-60098057 None:intergenic
CAGATAAAGGGTTCACATGG+AGG 0.617969 4_3:-60091415 None:intergenic
ATGGTGTCACATGTGAGGTA+TGG 0.619297 4_3:-60091303 None:intergenic
AGATGGTCCCAATCTAGTGA+AGG 0.621631 4_3:+60097572 Msa0652370:CDS
CTGATTCATGTGCTTTACCG+AGG 0.625223 4_3:+60091832 Msa0652370:CDS
TGTTGGTAGAGTGCTTACGC+TGG 0.631705 4_3:+60097008 Msa0652370:CDS
CATGGACACAAGGAGAGCTA+GGG 0.635196 4_3:-60091601 None:intergenic
TTATAAGGGATTGACCACTT+GGG 0.640369 4_3:+60097617 Msa0652370:CDS
ATCAACCCATCCAGCCCAAG+TGG 0.643543 4_3:-60097631 None:intergenic
GCGAAGTTGAACCAGTACCT+GGG 0.647088 4_3:+60097861 Msa0652370:CDS
ACCCACAAGGGAGATTCACA+AGG 0.652804 4_3:+60097099 Msa0652370:CDS
ACCTGGGCCAAAATATCCGG+CGG 0.657712 4_3:+60097877 Msa0652370:CDS
AATATATGGTGTCACATGTG+AGG 0.659308 4_3:-60091308 None:intergenic
TCCCAATCTAGTGAAGGACA+TGG 0.660797 4_3:+60097578 Msa0652370:CDS
TCTTGAAGAATAGATCACAA+AGG 0.661536 4_3:+60098165 Msa0652370:intron
TTCACTACATCAGCTTCAGG+AGG 0.663580 4_3:-60097905 None:intergenic
ACATGTTGATCTTCAACTCG+TGG 0.664957 4_3:+60097067 Msa0652370:CDS
TTGGTGGACATAATTCAGCA+AGG 0.667272 4_3:+60096985 Msa0652370:CDS
TACTTACTGATAATGAGTAG+GGG 0.672320 4_3:-60097700 None:intergenic
GCCGGGATTGGAATGAACCA+AGG 0.674279 4_3:+60097825 Msa0652370:CDS
TGGCATTGGTGGACCCACAA+GGG 0.678903 4_3:+60097087 Msa0652370:CDS
CCCACAAGGGAGATTCACAA+GGG 0.747574 4_3:+60097100 Msa0652370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATAAAGAAAAAAACAA+TGG - chr4_3:60092589-60092608 None:intergenic 10.0%
!! AACATATTATGAAATATAAT+TGG + chr4_3:60094407-60094426 Msa0652370:intron 10.0%
!!! TAATACACTTTTTAAAATAT+GGG - chr4_3:60095406-60095425 None:intergenic 10.0%
!! TATGAAATTTCAAATAATAT+TGG - chr4_3:60096864-60096883 None:intergenic 10.0%
!! AATAGTGAATTAGTAATATA+TGG - chr4_3:60091325-60091344 None:intergenic 15.0%
!! AAAAAAAAAAATCAATACCT+CGG - chr4_3:60091852-60091871 None:intergenic 15.0%
!! ATTATATTCACAAAATCATA+TGG - chr4_3:60092538-60092557 None:intergenic 15.0%
!!! TAATTTAACTTGTAAATAGA+GGG - chr4_3:60092647-60092666 None:intergenic 15.0%
!!! ATAATTTAACTTGTAAATAG+AGG - chr4_3:60092648-60092667 None:intergenic 15.0%
!! ATAGTTATATTGGAATATAA+AGG - chr4_3:60092743-60092762 None:intergenic 15.0%
!!! TAATCTTTATTTGAAAAGTT+GGG - chr4_3:60093504-60093523 None:intergenic 15.0%
!!! ATAATCTTTATTTGAAAAGT+TGG - chr4_3:60093505-60093524 None:intergenic 15.0%
!!! GATTTTATCATATTATTTGT+AGG + chr4_3:60093969-60093988 Msa0652370:intron 15.0%
!!! TTAATCAAGAGTTTTTATAT+AGG - chr4_3:60094170-60094189 None:intergenic 15.0%
!!! GAAATATAATTGGTTTAATT+AGG + chr4_3:60094417-60094436 Msa0652370:intron 15.0%
!! TAAATTGCATATTAAATTTG+AGG + chr4_3:60094735-60094754 Msa0652370:intron 15.0%
!! TAAATATTGTTTAACATGTT+TGG + chr4_3:60094758-60094777 Msa0652370:intron 15.0%
!! AAGTAAATGATCAAATTTAA+GGG + chr4_3:60094809-60094828 Msa0652370:intron 15.0%
!!! ATTATTTGGTGAAAAAATTA+TGG + chr4_3:60095103-60095122 Msa0652370:intron 15.0%
!!! ATATTTAAATCATTAACTTG+TGG + chr4_3:60095356-60095375 Msa0652370:intron 15.0%
!!! GTAATACACTTTTTAAAATA+TGG - chr4_3:60095407-60095426 None:intergenic 15.0%
!! TAAACAAAATGATTTATGTT+TGG + chr4_3:60095625-60095644 Msa0652370:intron 15.0%
!!! AACTTTATTTTAAGTAGATA+AGG - chr4_3:60096679-60096698 None:intergenic 15.0%
!! TCTTAAAAAAGAAAAAAGTA+AGG + chr4_3:60097349-60097368 Msa0652370:intron 15.0%
!!! ATTTTCTTAATTGAGTTTGA+GGG - chr4_3:60091374-60091393 None:intergenic 20.0%
!!! AATTTTCTTAATTGAGTTTG+AGG - chr4_3:60091375-60091394 None:intergenic 20.0%
!!! TATTTAAGATACTGATTATC+AGG - chr4_3:60091801-60091820 None:intergenic 20.0%
!! TTCATTATAATTACAAGTGT+CGG - chr4_3:60091985-60092004 None:intergenic 20.0%
!!! GTAATGAGTAATTATTTTTG+TGG + chr4_3:60092277-60092296 Msa0652370:intron 20.0%
!! ATATTCCAATATAACTATAG+AGG + chr4_3:60092745-60092764 Msa0652370:intron 20.0%
!! AATTCCACGATATTTATAAA+TGG + chr4_3:60093362-60093381 Msa0652370:intron 20.0%
!!! TTTTATTTACTTGTTTTGCA+AGG + chr4_3:60093398-60093417 Msa0652370:intron 20.0%
!!! TTTATTTACTTGTTTTGCAA+GGG + chr4_3:60093399-60093418 Msa0652370:intron 20.0%
!! AAAAAAAACACTAATGATCA+TGG - chr4_3:60093456-60093475 None:intergenic 20.0%
!!! AATCTTTATTTGAAAAGTTG+GGG - chr4_3:60093503-60093522 None:intergenic 20.0%
!! TTATTAAGATTGAAAGAAAG+GGG - chr4_3:60093720-60093739 None:intergenic 20.0%
!! CTTATTAAGATTGAAAGAAA+GGG - chr4_3:60093721-60093740 None:intergenic 20.0%
!! ACTTATTAAGATTGAAAGAA+AGG - chr4_3:60093722-60093741 None:intergenic 20.0%
!! ACAAATTCAATCAATGATTT+GGG + chr4_3:60093902-60093921 Msa0652370:intron 20.0%
!! AAAACTCTTGATTAAACTAA+AGG + chr4_3:60094175-60094194 Msa0652370:intron 20.0%
!! TGTAAAAACTCTCTATATTA+AGG - chr4_3:60094473-60094492 None:intergenic 20.0%
!! CAAGTAAATGATCAAATTTA+AGG + chr4_3:60094808-60094827 Msa0652370:intron 20.0%
!! TGGATAAGTTTATGATAATA+TGG + chr4_3:60094833-60094852 Msa0652370:intron 20.0%
!!! TTTTTGAAATTGTAAAGTGT+TGG - chr4_3:60094952-60094971 None:intergenic 20.0%
!!! TAGAGAATATTTCTTCTTTT+GGG - chr4_3:60095264-60095283 None:intergenic 20.0%
!! TAAAGAATGAGAATTGATAA+AGG + chr4_3:60095715-60095734 Msa0652370:intron 20.0%
!! AAAGAATGAGAATTGATAAA+GGG + chr4_3:60095716-60095735 Msa0652370:intron 20.0%
!! TATATCTTGATGGAAAAAAA+TGG - chr4_3:60096218-60096237 None:intergenic 20.0%
!! CTTATTCAAATATATCTTGA+TGG - chr4_3:60096228-60096247 None:intergenic 20.0%
!! TATAATAATTATGCACTATG+TGG - chr4_3:60096437-60096456 None:intergenic 20.0%
!!! TTTTGTATTTCTCTTTTTAG+TGG - chr4_3:60096484-60096503 None:intergenic 20.0%
!!! GTAAGTCTTAAAGATTTTTT+TGG + chr4_3:60096604-60096623 Msa0652370:intron 20.0%
!!! TGTAGTTTTGTGAAAATTAA+AGG + chr4_3:60097257-60097276 Msa0652370:intron 20.0%
! AAATTTAGAGGGTTGTTTAT+GGG - chr4_3:60091279-60091298 None:intergenic 25.0%
!! TTTTCTTAATTGAGTTTGAG+GGG - chr4_3:60091373-60091392 None:intergenic 25.0%
! TTTGTATGTTATGTTCTAGT+TGG - chr4_3:60091484-60091503 None:intergenic 25.0%
! AAGAGAGGAAAAACAATTTA+TGG - chr4_3:60091575-60091594 None:intergenic 25.0%
!! AATTGTTTTCTCCTTTTTGA+AGG - chr4_3:60091663-60091682 None:intergenic 25.0%
!!! AACAATTGTAATTTGTTCTC+TGG + chr4_3:60091684-60091703 Msa0652370:CDS 25.0%
! CAATTTGATTGCCAAAAATT+TGG + chr4_3:60091771-60091790 Msa0652370:CDS 25.0%
! ATCAGTATCTTAAATACTCT+TGG + chr4_3:60091805-60091824 Msa0652370:CDS 25.0%
!! CTGAAATCTCTAAAAAAAAC+AGG - chr4_3:60092057-60092076 None:intergenic 25.0%
!! GTCTTAAATCTCTAAAAAAC+AGG + chr4_3:60092098-60092117 Msa0652370:intron 25.0%
!!! AGTAATTATTTTTGTGGTGT+AGG + chr4_3:60092283-60092302 Msa0652370:intron 25.0%
! GGAAAAAAGATAATGTTTGT+GGG + chr4_3:60092339-60092358 Msa0652370:CDS 25.0%
! TGAAAATTGAAGACATTCAT+GGG - chr4_3:60092564-60092583 None:intergenic 25.0%
! ATGAAAATTGAAGACATTCA+TGG - chr4_3:60092565-60092584 None:intergenic 25.0%
! TGAAGGAGTCAAATTAAATT+AGG + chr4_3:60092704-60092723 Msa0652370:intron 25.0%
!! TTAAATTAGGATTTGATAGC+AGG + chr4_3:60092717-60092736 Msa0652370:intron 25.0%
! TTTGTCCTCTATAGTTATAT+TGG - chr4_3:60092753-60092772 None:intergenic 25.0%
! AAATGAGTAGAGATTGTAAT+AGG + chr4_3:60092770-60092789 Msa0652370:intron 25.0%
! ATTGTAATAGGTTAATAGAG+CGG + chr4_3:60092782-60092801 Msa0652370:intron 25.0%
!! AAAAACTCACTTTGATGATA+TGG + chr4_3:60092926-60092945 Msa0652370:intron 25.0%
! AACACAAATGTCTTTATAAG+TGG + chr4_3:60093058-60093077 Msa0652370:intron 25.0%
! TATAATCTCCACCTTATAAA+GGG + chr4_3:60093306-60093325 Msa0652370:intron 25.0%
! CACAAATTCAATCAATGATT+TGG + chr4_3:60093901-60093920 Msa0652370:intron 25.0%
! AATATCGCTAAAAACGTAAA+GGG - chr4_3:60094050-60094069 None:intergenic 25.0%
!! GTTTTTATATAGGTACCTTA+TGG - chr4_3:60094160-60094179 None:intergenic 25.0%
! TCTTGATTAAACTAAAGGTT+AGG + chr4_3:60094180-60094199 Msa0652370:intron 25.0%
! TTAAACTAAAGGTTAGGTAA+AGG + chr4_3:60094186-60094205 Msa0652370:intron 25.0%
!! AGTTTAAAATTCCTAGTTGT+AGG - chr4_3:60094553-60094572 None:intergenic 25.0%
!! CTAGGAATTTTAAACTTCAA+AGG + chr4_3:60094557-60094576 Msa0652370:intron 25.0%
!! TCTACATGTTACAATTTTAG+AGG - chr4_3:60094670-60094689 None:intergenic 25.0%
! CTAAAATTGTAACATGTAGA+TGG + chr4_3:60094670-60094689 Msa0652370:intron 25.0%
! ATATGCAATTTAGTCTCAAA+TGG - chr4_3:60094727-60094746 None:intergenic 25.0%
! AAATGATCAAATTTAAGGGA+TGG + chr4_3:60094813-60094832 Msa0652370:intron 25.0%
!!! GAGTTGATAAAATATCTATG+TGG + chr4_3:60094855-60094874 Msa0652370:intron 25.0%
!! CTAGAGAATATTTCTTCTTT+TGG - chr4_3:60095265-60095284 None:intergenic 25.0%
! ATTTGAAAAATGCTAATGCT+TGG + chr4_3:60095447-60095466 Msa0652370:intron 25.0%
!! TGAGAGAATTGATTTATGTT+TGG + chr4_3:60095581-60095600 Msa0652370:intron 25.0%
! ACTAAAATAGACATAGCTAA+AGG + chr4_3:60095684-60095703 Msa0652370:intron 25.0%
!! TTTGGAATACACATAAATCA+CGG - chr4_3:60096004-60096023 None:intergenic 25.0%
! GAACAAAATAAAGTAGAATC+TGG + chr4_3:60096038-60096057 Msa0652370:intron 25.0%
!! ACTTGTTACATGTAAAATGA+TGG + chr4_3:60096118-60096137 Msa0652370:intron 25.0%
! CTTGTTACATGTAAAATGAT+GGG + chr4_3:60096119-60096138 Msa0652370:intron 25.0%
! TGTTTAATTAACATCAGTCA+CGG + chr4_3:60096341-60096360 Msa0652370:intron 25.0%
!! CTTTTATTCCAAATGTTTGT+TGG - chr4_3:60096511-60096530 None:intergenic 25.0%
!! CAACAAACATTTGGAATAAA+AGG + chr4_3:60096509-60096528 Msa0652370:intron 25.0%
!! AAACATTTGGAATAAAAGGT+GGG + chr4_3:60096513-60096532 Msa0652370:intron 25.0%
! TAATATTGGATACTTAGAAG+TGG - chr4_3:60096850-60096869 None:intergenic 25.0%
! ATCAGATAGTATTATTGTAG+AGG - chr4_3:60097134-60097153 None:intergenic 25.0%
!! TATCTGATTAGTTACTATAG+TGG + chr4_3:60097146-60097165 Msa0652370:intron 25.0%
! TTCATCATCAATTCAAACAT+AGG - chr4_3:60097191-60097210 None:intergenic 25.0%
!!! ATGATAGAGTTTTGTTTGTT+AGG + chr4_3:60097409-60097428 Msa0652370:intron 25.0%
!!! GTTTGTTAGGATTTTATTCT+TGG + chr4_3:60097422-60097441 Msa0652370:intron 25.0%
!!! TTGGTGAAATTTTGTTTGTT+AGG + chr4_3:60097441-60097460 Msa0652370:intron 25.0%
! GTTTGAGTGAAAAAATGAAA+AGG - chr4_3:60097505-60097524 None:intergenic 25.0%
!! TTTTTCACTCAAACAATTGA+TGG + chr4_3:60097511-60097530 Msa0652370:intron 25.0%
!!! TTGAAAGAAGACTTTAGTTT+TGG - chr4_3:60097673-60097692 None:intergenic 25.0%
! AAAACTAAAGTCTTCTTTCA+AGG + chr4_3:60097672-60097691 Msa0652370:CDS 25.0%
!! TTACTTACTGATAATGAGTA+GGG - chr4_3:60097704-60097723 None:intergenic 25.0%
AATGGTACTACATTATTGAG+TGG - chr4_3:60091241-60091260 None:intergenic 30.0%
GGGAGAAATCAAAATCAAAA+TGG - chr4_3:60091259-60091278 None:intergenic 30.0%
GAAATTTAGAGGGTTGTTTA+TGG - chr4_3:60091280-60091299 None:intergenic 30.0%
! GGTATGGTTTGAAATTTAGA+GGG - chr4_3:60091290-60091309 None:intergenic 30.0%
! AGGTATGGTTTGAAATTTAG+AGG - chr4_3:60091291-60091310 None:intergenic 30.0%
CAAAATTAGTGCCAGATAAA+GGG - chr4_3:60091430-60091449 None:intergenic 30.0%
ACAAAATTAGTGCCAGATAA+AGG - chr4_3:60091431-60091450 None:intergenic 30.0%
CTAGTTGGTCATGTATATAT+AGG - chr4_3:60091469-60091488 None:intergenic 30.0%
! ATTCTCTCTTTCACAGTTTT+TGG + chr4_3:60091516-60091535 Msa0652370:five_prime_UTR 30.0%
ATAAAGTGAGTCCTTCAAAA+AGG + chr4_3:60091649-60091668 Msa0652370:CDS 30.0%
!! TAATTTGTTCTCTGGTAGTT+GGG + chr4_3:60091692-60091711 Msa0652370:CDS 30.0%
! TCAAATTGAGCTTCTAAGAA+GGG - chr4_3:60091759-60091778 None:intergenic 30.0%
! ATCAAATTGAGCTTCTAAGA+AGG - chr4_3:60091760-60091779 None:intergenic 30.0%
! TATCAGGTCTTCCAAATTTT+TGG - chr4_3:60091785-60091804 None:intergenic 30.0%
ATTATTCACTAGTGCAAATC+AGG + chr4_3:60092022-60092041 Msa0652370:intron 30.0%
TTATTCACTAGTGCAAATCA+GGG + chr4_3:60092023-60092042 Msa0652370:intron 30.0%
GATTTCTTGAATAGATGGAA+GGG + chr4_3:60092318-60092337 Msa0652370:CDS 30.0%
GGGAAAAAAGATAATGTTTG+TGG + chr4_3:60092338-60092357 Msa0652370:CDS 30.0%
ATTCATTGAGTCTAAACATG+TGG + chr4_3:60092364-60092383 Msa0652370:CDS 30.0%
TTCATTGAGTCTAAACATGT+GGG + chr4_3:60092365-60092384 Msa0652370:CDS 30.0%
AATCTCACAATACCATGAAA+AGG + chr4_3:60092903-60092922 Msa0652370:intron 30.0%
! AAGTGAGTTTTTCCTTTTCA+TGG - chr4_3:60092918-60092937 None:intergenic 30.0%
CTCACATTGATATGATGATA+TGG + chr4_3:60093035-60093054 Msa0652370:intron 30.0%
ACAAATGTCTTTATAAGTGG+TGG + chr4_3:60093061-60093080 Msa0652370:intron 30.0%
! CCTTACAAAATCGACTTATA+AGG - chr4_3:60093097-60093116 None:intergenic 30.0%
!! CCTTATAAGTCGATTTTGTA+AGG + chr4_3:60093094-60093113 Msa0652370:intron 30.0%
GTAACTGTTATCAGATTACT+CGG + chr4_3:60093190-60093209 Msa0652370:intron 30.0%
GTATAATCTCCACCTTATAA+AGG + chr4_3:60093305-60093324 Msa0652370:intron 30.0%
ATAATCTCCACCTTATAAAG+GGG + chr4_3:60093307-60093326 Msa0652370:intron 30.0%
TCCACGATATTTATAAATGG+TGG + chr4_3:60093365-60093384 Msa0652370:intron 30.0%
CCACGATATTTATAAATGGT+GGG + chr4_3:60093366-60093385 Msa0652370:intron 30.0%
CAAGAAAAACTTGATGTATG+TGG - chr4_3:60093750-60093769 None:intergenic 30.0%
AAAGATGCGAAATCAAACAA+CGG - chr4_3:60093831-60093850 None:intergenic 30.0%
CAATATCGCTAAAAACGTAA+AGG - chr4_3:60094051-60094070 None:intergenic 30.0%
AGCGATATTGATCATGTTAT+TGG + chr4_3:60094061-60094080 Msa0652370:intron 30.0%
TAAAGGTTAGGTAAAGGATA+CGG + chr4_3:60094192-60094211 Msa0652370:intron 30.0%
TTTCACTCCATATGACATTA+TGG - chr4_3:60094218-60094237 None:intergenic 30.0%
ATATGGAGTGAAAGTCTTTA+CGG + chr4_3:60094225-60094244 Msa0652370:intron 30.0%
! AACTCACGTTCATTTTCATA+TGG + chr4_3:60094317-60094336 Msa0652370:intron 30.0%
TTGTAACATGTAGATGGAAA+TGG + chr4_3:60094676-60094695 Msa0652370:intron 30.0%
TTTAACATGTTTGGATCTCA+AGG + chr4_3:60094767-60094786 Msa0652370:intron 30.0%
TCATTTACTTGTCAACTTCA+AGG - chr4_3:60094799-60094818 None:intergenic 30.0%
TTTAAAGATAGAAAGTAGCG+AGG + chr4_3:60094915-60094934 Msa0652370:intron 30.0%
!! TTGTAAAGTGTTGGTCAAAA+TGG - chr4_3:60094943-60094962 None:intergenic 30.0%
TTGGTGAAAAAATTATGGCT+TGG + chr4_3:60095108-60095127 Msa0652370:intron 30.0%
ATATTCAAAGCTGAACCAAA+CGG - chr4_3:60095507-60095526 None:intergenic 30.0%
!!! TGAACCAAACATGTTGTTTT+TGG + chr4_3:60095886-60095905 Msa0652370:intron 30.0%
!!! TTTTTGGCTAGAATTGCTTT+TGG + chr4_3:60095902-60095921 Msa0652370:intron 30.0%
!! CACTGTAGAGAATTGATTTT+GGG + chr4_3:60095925-60095944 Msa0652370:intron 30.0%
GTGTATTCCAAACACAATAT+AGG + chr4_3:60096012-60096031 Msa0652370:intron 30.0%
GTTCAAACCTATATTGTGTT+TGG - chr4_3:60096022-60096041 None:intergenic 30.0%
GAAGTGGGAAAAGTTAATTT+CGG + chr4_3:60096064-60096083 Msa0652370:intron 30.0%
TTGTAAATTGTTGTGATCAC+AGG - chr4_3:60096282-60096301 None:intergenic 30.0%
GTTTAATTAACATCAGTCAC+GGG + chr4_3:60096342-60096361 Msa0652370:intron 30.0%
AAAATCTGCCAACAAACATT+TGG + chr4_3:60096500-60096519 Msa0652370:intron 30.0%
! CAAACATTTGGAATAAAAGG+TGG + chr4_3:60096512-60096531 Msa0652370:intron 30.0%
GTCTAATTTACGTTAAACTC+AGG - chr4_3:60096710-60096729 None:intergenic 30.0%
TAGTGATAAAGAATGGCTAA+AGG - chr4_3:60096794-60096813 None:intergenic 30.0%
CATACACTAGTGATAAAGAA+TGG - chr4_3:60096801-60096820 None:intergenic 30.0%
TGAATTATGTCCACCAAATA+TGG - chr4_3:60096982-60097001 None:intergenic 30.0%
ATCACGCTATAATGCATATT+TGG - chr4_3:60097307-60097326 None:intergenic 30.0%
AAAAGGAAAATGAATCAGTG+AGG - chr4_3:60097488-60097507 None:intergenic 30.0%
! AGCTGGGATTTTATTAAAGA+TGG + chr4_3:60097555-60097574 Msa0652370:intron 30.0%
CCTTATAAAATGCATCCAAA+CGG - chr4_3:60097605-60097624 None:intergenic 30.0%
! CGTTTGGATGCATTTTATAA+GGG + chr4_3:60097603-60097622 Msa0652370:CDS 30.0%
!!! AGAAGACTTTAGTTTTGGTA+GGG - chr4_3:60097668-60097687 None:intergenic 30.0%
!!! AAGAAGACTTTAGTTTTGGT+AGG - chr4_3:60097669-60097688 None:intergenic 30.0%
! TACTTACTGATAATGAGTAG+GGG - chr4_3:60097703-60097722 None:intergenic 30.0%
! GTTACTTACTGATAATGAGT+AGG - chr4_3:60097705-60097724 None:intergenic 30.0%
TGACATGAATGAGCATATAT+AGG - chr4_3:60097729-60097748 None:intergenic 30.0%
ACATCCTTCTATCTATACTA+AGG + chr4_3:60098003-60098022 Msa0652370:CDS 30.0%
TGATCCTTAGTATAGATAGA+AGG - chr4_3:60098010-60098029 None:intergenic 30.0%
ATCTATACTAAGGATCATAC+AGG + chr4_3:60098013-60098032 Msa0652370:CDS 30.0%
TCTTGAAGAATAGATCACAA+AGG + chr4_3:60098165-60098184 Msa0652370:intron 30.0%
CTTGAAGAATAGATCACAAA+GGG + chr4_3:60098166-60098185 Msa0652370:intron 30.0%
!! AATATATGGTGTCACATGTG+AGG - chr4_3:60091311-60091330 None:intergenic 35.0%
!! AGTTTTTGGACCCTCAAAAT+AGG + chr4_3:60091530-60091549 Msa0652370:five_prime_UTR 35.0%
ACCCTCAAAATAGGACAATA+TGG + chr4_3:60091539-60091558 Msa0652370:exon 35.0%
!! CCCATATTGTCCTATTTTGA+GGG - chr4_3:60091543-60091562 None:intergenic 35.0%
CCCTCAAAATAGGACAATAT+GGG + chr4_3:60091540-60091559 Msa0652370:exon 35.0%
!! GTAATTTGTTCTCTGGTAGT+TGG + chr4_3:60091691-60091710 Msa0652370:CDS 35.0%
! CAAATTGAGCTTCTAAGAAG+GGG - chr4_3:60091758-60091777 None:intergenic 35.0%
!!! GACCTGTTTTTGTGTAAAAG+TGG + chr4_3:60092076-60092095 Msa0652370:intron 35.0%
!! GACCACTTTTACACAAAAAC+AGG - chr4_3:60092081-60092100 None:intergenic 35.0%
TTAATCTGTAGTGCAAACCA+GGG - chr4_3:60092132-60092151 None:intergenic 35.0%
! TTTTTGTGGTGTAGGTTCAA+TGG + chr4_3:60092291-60092310 Msa0652370:intron 35.0%
GAGAGGATTTCTTGAATAGA+TGG + chr4_3:60092313-60092332 Msa0652370:CDS 35.0%
GGATTTCTTGAATAGATGGA+AGG + chr4_3:60092317-60092336 Msa0652370:CDS 35.0%
GTCTTGTATGATTCATGCAT+CGG + chr4_3:60092395-60092414 Msa0652370:CDS 35.0%
TTTCCTAGAAAAGCTTGTAG+TGG - chr4_3:60092430-60092449 None:intergenic 35.0%
! GTGATTTTCCAGGTAATAGT+TGG + chr4_3:60092465-60092484 Msa0652370:intron 35.0%
TAACTCTTAGTTGTGTTGTG+TGG + chr4_3:60092813-60092832 Msa0652370:intron 35.0%
AACTCTTAGTTGTGTTGTGT+GGG + chr4_3:60092814-60092833 Msa0652370:intron 35.0%
CTATTGTGTCTCTTTCAGTT+AGG + chr4_3:60093168-60093187 Msa0652370:intron 35.0%
GTCAAATCATGAACGTTAAG+AGG + chr4_3:60093226-60093245 Msa0652370:intron 35.0%
TAATCTCCACCTTATAAAGG+GGG + chr4_3:60093308-60093327 Msa0652370:intron 35.0%
CCCACCATTTATAAATATCG+TGG - chr4_3:60093369-60093388 None:intergenic 35.0%
!! ATTTCGCATCTTTTGTTGTG+CGG + chr4_3:60093838-60093857 Msa0652370:intron 35.0%
CCCAAGTTAATAGCATTCAA+CGG - chr4_3:60094002-60094021 None:intergenic 35.0%
CCGTTGAATGCTATTAACTT+GGG + chr4_3:60093999-60094018 Msa0652370:intron 35.0%
TTAACATGCTACGTACCATA+AGG + chr4_3:60094142-60094161 Msa0652370:intron 35.0%
! ACGTTCATTTTCATATGGAG+TGG + chr4_3:60094322-60094341 Msa0652370:intron 35.0%
! TCATTTTCATATGGAGTGGT+TGG + chr4_3:60094326-60094345 Msa0652370:intron 35.0%
! ATTCTTGAAAGTATGAGCGT+CGG - chr4_3:60095011-60095030 None:intergenic 35.0%
!! ATCATTAACTTGTGGCCTTA+AGG + chr4_3:60095364-60095383 Msa0652370:intron 35.0%
!! TCATTAACTTGTGGCCTTAA+GGG + chr4_3:60095365-60095384 Msa0652370:intron 35.0%
!! AATGTTAACTTGTGCCCTTA+AGG - chr4_3:60095382-60095401 None:intergenic 35.0%
CTTGGTATTGCTACTAGTAT+TGG + chr4_3:60095465-60095484 Msa0652370:intron 35.0%
TATTCAAAGCTGAACCAAAC+GGG - chr4_3:60095506-60095525 None:intergenic 35.0%
AAACCTATACACGTTGTTCA+AGG + chr4_3:60095778-60095797 Msa0652370:intron 35.0%
! TTCTAGAAAAGCTAGAAGCT+AGG + chr4_3:60095809-60095828 Msa0652370:intron 35.0%
CTAGCCAAAAACAACATGTT+TGG - chr4_3:60095893-60095912 None:intergenic 35.0%
!! GCACTGTAGAGAATTGATTT+TGG + chr4_3:60095924-60095943 Msa0652370:intron 35.0%
ACGGTGGAAAATTAGATTGA+GGG - chr4_3:60095985-60096004 None:intergenic 35.0%
! AAGTAGAATCTGGAATGAAG+TGG + chr4_3:60096048-60096067 Msa0652370:intron 35.0%
! AGTAGAATCTGGAATGAAGT+GGG + chr4_3:60096049-60096068 Msa0652370:intron 35.0%
AAATTGTTGTGATCACAGGT+TGG - chr4_3:60096278-60096297 None:intergenic 35.0%
!! TTTCATTTTGAGTGGTTCAG+TGG - chr4_3:60096891-60096910 None:intergenic 35.0%
AACCACTCAAAATGAAACTG+TGG + chr4_3:60096894-60096913 Msa0652370:intron 35.0%
! TACCACAGTTTCATTTTGAG+TGG - chr4_3:60096899-60096918 None:intergenic 35.0%
ACTATACCGTACACCATATT+TGG + chr4_3:60096966-60096985 Msa0652370:CDS 35.0%
! CCGTTTGGATGCATTTTATA+AGG + chr4_3:60097602-60097621 Msa0652370:CDS 35.0%
TTTATAAGGGATTGACCACT+TGG + chr4_3:60097616-60097635 Msa0652370:CDS 35.0%
TTATAAGGGATTGACCACTT+GGG + chr4_3:60097617-60097636 Msa0652370:CDS 35.0%
CTCTCACAACTAAGAAAAGA+TGG + chr4_3:60097980-60097999 Msa0652370:CDS 35.0%
ACATTGTTAGAGCTGCATTT+AGG - chr4_3:60098093-60098112 None:intergenic 35.0%
ATTGAGTTTGAGGGGTTTCA+TGG - chr4_3:60091365-60091384 None:intergenic 40.0%
! GCCCATATTGTCCTATTTTG+AGG - chr4_3:60091544-60091563 None:intergenic 40.0%
! AAAAACAGGTCTTGTATCCC+TGG + chr4_3:60092112-60092131 Msa0652370:intron 40.0%
GTTAATCTGTAGTGCAAACC+AGG - chr4_3:60092133-60092152 None:intergenic 40.0%
GCACTACAGATTAACTGTGT+CGG + chr4_3:60092138-60092157 Msa0652370:intron 40.0%
ATTGTCAGTCCTATGAAGCA+CGG - chr4_3:60092199-60092218 None:intergenic 40.0%
GAAAAGCTTGTAGTGGCATT+TGG - chr4_3:60092423-60092442 None:intergenic 40.0%
! ATGCCACTACAAGCTTTTCT+AGG + chr4_3:60092424-60092443 Msa0652370:CDS 40.0%
! AGTGTCTACTGTGATTTTCC+AGG + chr4_3:60092455-60092474 Msa0652370:CDS 40.0%
CAACAAGACCAACTATTACC+TGG - chr4_3:60092476-60092495 None:intergenic 40.0%
TTGTGTTGTGTGGGTAACTA+AGG + chr4_3:60092823-60092842 Msa0652370:intron 40.0%
TGTGTTGTGTGGGTAACTAA+GGG + chr4_3:60092824-60092843 Msa0652370:intron 40.0%
TCTTCCAAACCCCCTTTATA+AGG - chr4_3:60093320-60093339 None:intergenic 40.0%
!!! TACTTGTTTTGCAAGGGTTG+AGG + chr4_3:60093405-60093424 Msa0652370:intron 40.0%
! ATCCAGAAGCATGAGTATTC+TGG + chr4_3:60093939-60093958 Msa0652370:intron 40.0%
GCCGTTGAATGCTATTAACT+TGG + chr4_3:60093998-60094017 Msa0652370:intron 40.0%
GATACGGCCATAATGTCATA+TGG + chr4_3:60094208-60094227 Msa0652370:intron 40.0%
! GAAAGTCTTTACGGTGGATT+TGG + chr4_3:60094234-60094253 Msa0652370:intron 40.0%
! CGTGAGTTGTCTGATTTGAT+CGG - chr4_3:60094305-60094324 None:intergenic 40.0%
ATGAGGATTCTCCTACAACT+AGG + chr4_3:60094539-60094558 Msa0652370:intron 40.0%
ATGTTTGGATCTCAAGGTGA+CGG + chr4_3:60094773-60094792 Msa0652370:intron 40.0%
! GAAATTCATGCAAGTGTCGT+TGG - chr4_3:60095165-60095184 None:intergenic 40.0%
!! AGTGTTAACTTGTGCTCTCA+TGG + chr4_3:60095224-60095243 Msa0652370:intron 40.0%
TCTCCTTGAACAACGTGTAT+AGG - chr4_3:60095784-60095803 None:intergenic 40.0%
AGCTAGGATTTGTAGCTTCA+TGG + chr4_3:60095825-60095844 Msa0652370:intron 40.0%
! GCTTCATGGAGAATTGCTTT+TGG + chr4_3:60095839-60095858 Msa0652370:intron 40.0%
!! TCATGGAGAATTGCTTTTGG+AGG + chr4_3:60095842-60095861 Msa0652370:intron 40.0%
AATTAGATTGAGGGCCTGTT+TGG - chr4_3:60095976-60095995 None:intergenic 40.0%
CACGGTGGAAAATTAGATTG+AGG - chr4_3:60095986-60096005 None:intergenic 40.0%
GGAATACACATAAATCACGG+TGG - chr4_3:60096001-60096020 None:intergenic 40.0%
ATAAGACTAGACAGTCTGTG+AGG + chr4_3:60096243-60096262 Msa0652370:intron 40.0%
TAAGACTAGACAGTCTGTGA+GGG + chr4_3:60096244-60096263 Msa0652370:intron 40.0%
GACTTGTCGACATAAGTCTA+CGG - chr4_3:60096732-60096751 None:intergenic 40.0%
TGGTGTACGGTATAGTTGTA+TGG - chr4_3:60096962-60096981 None:intergenic 40.0%
ATACCGTACACCATATTTGG+TGG + chr4_3:60096969-60096988 Msa0652370:CDS 40.0%
TGTCCACCAAATATGGTGTA+CGG - chr4_3:60096975-60096994 None:intergenic 40.0%
! TTGGTGGACATAATTCAGCA+AGG + chr4_3:60096985-60097004 Msa0652370:CDS 40.0%
GACATAATTCAGCAAGGTGT+TGG + chr4_3:60096991-60097010 Msa0652370:CDS 40.0%
! TGGTAAGGCATGGATTGATA+TGG + chr4_3:60097044-60097063 Msa0652370:CDS 40.0%
ACATGTTGATCTTCAACTCG+TGG + chr4_3:60097067-60097086 Msa0652370:CDS 40.0%
! TCATCGCGACAACACAATTT+TGG + chr4_3:60097221-60097240 Msa0652370:intron 40.0%
! TGATGTTTGCTACATTCAGC+TGG + chr4_3:60097538-60097557 Msa0652370:intron 40.0%
! GATGTTTGCTACATTCAGCT+GGG + chr4_3:60097539-60097558 Msa0652370:intron 40.0%
TCCATGTCCTTCACTAGATT+GGG - chr4_3:60097582-60097601 None:intergenic 40.0%
!! AGTTTTGGTAGGGTCAACAT+TGG - chr4_3:60097658-60097677 None:intergenic 40.0%
TCCCCTTTCTCCTTGAATTT+AGG + chr4_3:60097801-60097820 Msa0652370:intron 40.0%
CCCTAAATTCAAGGAGAAAG+GGG - chr4_3:60097805-60097824 None:intergenic 40.0%
CCCCTTTCTCCTTGAATTTA+GGG + chr4_3:60097802-60097821 Msa0652370:intron 40.0%
CCCCTAAATTCAAGGAGAAA+GGG - chr4_3:60097806-60097825 None:intergenic 40.0%
CCCTTTCTCCTTGAATTTAG+GGG + chr4_3:60097803-60097822 Msa0652370:intron 40.0%
GTTGAAGAACATGAAGAAGC+AGG + chr4_3:60097934-60097953 Msa0652370:CDS 40.0%
! AGGAGTATGTTCCAAGTATC+AGG - chr4_3:60098073-60098092 None:intergenic 40.0%
!! ATGGTGTCACATGTGAGGTA+TGG - chr4_3:60091306-60091325 None:intergenic 45.0%
! AGGGGTTTCATGGATGGATT+AGG - chr4_3:60091355-60091374 None:intergenic 45.0%
AGTTTGAGGGGTTTCATGGA+TGG - chr4_3:60091361-60091380 None:intergenic 45.0%
TAAAGGGTTCACATGGAGGA+TGG - chr4_3:60091414-60091433 None:intergenic 45.0%
CAGATAAAGGGTTCACATGG+AGG - chr4_3:60091418-60091437 None:intergenic 45.0%
CTCCATGTGAACCCTTTATC+TGG + chr4_3:60091416-60091435 Msa0652370:five_prime_UTR 45.0%
TGCCAGATAAAGGGTTCACA+TGG - chr4_3:60091421-60091440 None:intergenic 45.0%
GAGCTAGGGTAAAGTAAGAG+AGG - chr4_3:60091590-60091609 None:intergenic 45.0%
GTGACTTTGTTGCTCCTACT+AGG - chr4_3:60091629-60091648 None:intergenic 45.0%
TTCTCTGGTAGTTGGGTGAT+TGG + chr4_3:60091699-60091718 Msa0652370:CDS 45.0%
CTCGGTAAAGCACATGAATC+AGG - chr4_3:60091834-60091853 None:intergenic 45.0%
CTGATTCATGTGCTTTACCG+AGG + chr4_3:60091832-60091851 Msa0652370:CDS 45.0%
GCATGAACACTCCTGAGATT+AGG + chr4_3:60091913-60091932 Msa0652370:intron 45.0%
AGTCCTATGAAGCACGGATA+CGG - chr4_3:60092193-60092212 None:intergenic 45.0%
GTGTTGTGTGGGTAACTAAG+GGG + chr4_3:60092825-60092844 Msa0652370:intron 45.0%
TGTTGTGTGGGTAACTAAGG+GGG + chr4_3:60092826-60092845 Msa0652370:intron 45.0%
TCCACCTTATAAAGGGGGTT+TGG + chr4_3:60093313-60093332 Msa0652370:intron 45.0%
TCCAAACCCCCTTTATAAGG+TGG - chr4_3:60093317-60093336 None:intergenic 45.0%
TCCTCTTTCACACATCGAGT+AGG + chr4_3:60093643-60093662 Msa0652370:intron 45.0%
CCTCTTTCACACATCGAGTA+GGG + chr4_3:60093644-60093663 Msa0652370:intron 45.0%
CTCTTTCACACATCGAGTAG+GGG + chr4_3:60093645-60093664 Msa0652370:intron 45.0%
! CATCGAGTAGGGGTGATTTT+AGG + chr4_3:60093655-60093674 Msa0652370:intron 45.0%
AAGGGGAAAAGAGATGCACA+GGG - chr4_3:60093703-60093722 None:intergenic 45.0%
AAAGGGGAAAAGAGATGCAC+AGG - chr4_3:60093704-60093723 None:intergenic 45.0%
CACCAGAATACTCATGCTTC+TGG - chr4_3:60093944-60093963 None:intergenic 45.0%
TGGAGTGAAAGTCTTTACGG+TGG + chr4_3:60094228-60094247 Msa0652370:intron 45.0%
TCCTCATGTCTCCTTGGTTA+GGG - chr4_3:60094526-60094545 None:intergenic 45.0%
ATCCTCATGTCTCCTTGGTT+AGG - chr4_3:60094527-60094546 None:intergenic 45.0%
TCTTCTATTCAGTGCCCGTT+TGG + chr4_3:60095489-60095508 Msa0652370:intron 45.0%
TCTCAGAAGCCAAACCAAAC+AGG + chr4_3:60095959-60095978 Msa0652370:intron 45.0%
ATGTGGCTTGACAGCATATC+TGG - chr4_3:60096420-60096439 None:intergenic 45.0%
! GATACTTGATGATACTGCGC+AGG + chr4_3:60096924-60096943 Msa0652370:intron 45.0%
GGACTCCATAAATGCTGGTA+AGG + chr4_3:60097029-60097048 Msa0652370:CDS 45.0%
CCATGCCTTACCAGCATTTA+TGG - chr4_3:60097037-60097056 None:intergenic 45.0%
CCATAAATGCTGGTAAGGCA+TGG + chr4_3:60097034-60097053 Msa0652370:CDS 45.0%
TGATCTTCAACTCGTGGCAT+TGG + chr4_3:60097073-60097092 Msa0652370:CDS 45.0%
AGATGGTCCCAATCTAGTGA+AGG + chr4_3:60097572-60097591 Msa0652370:CDS 45.0%
TCCCAATCTAGTGAAGGACA+TGG + chr4_3:60097578-60097597 Msa0652370:CDS 45.0%
GTCCATGTCCTTCACTAGAT+TGG - chr4_3:60097583-60097602 None:intergenic 45.0%
GCCCCTAAATTCAAGGAGAA+AGG - chr4_3:60097807-60097826 None:intergenic 45.0%
TTCTCCTTGAATTTAGGGGC+CGG + chr4_3:60097807-60097826 Msa0652370:intron 45.0%
TCCTTGGTTCATTCCAATCC+CGG - chr4_3:60097829-60097848 None:intergenic 45.0%
AGTACCTGGGCCAAAATATC+CGG + chr4_3:60097874-60097893 Msa0652370:CDS 45.0%
TTCACTACATCAGCTTCAGG+AGG - chr4_3:60097908-60097927 None:intergenic 45.0%
CTGTTCACTACATCAGCTTC+AGG - chr4_3:60097911-60097930 None:intergenic 45.0%
!!! CTTTTTTTTAATTAATTATT+TGG + chr4_3:60095089-60095108 Msa0652370:intron 5.0%
!!! TAAATATAGAAATTATTTTT+TGG - chr4_3:60095343-60095362 None:intergenic 5.0%
!! TATTATTATATAATAACAAA+AGG - chr4_3:60096372-60096391 None:intergenic 5.0%
!! GTTATTATATAATAATAATA+TGG + chr4_3:60096375-60096394 Msa0652370:intron 5.0%
CATGGACACAAGGAGAGCTA+GGG - chr4_3:60091604-60091623 None:intergenic 50.0%
CTACTAGGTGCATGGACACA+AGG - chr4_3:60091614-60091633 None:intergenic 50.0%
CTTGTGTCCATGCACCTAGT+AGG + chr4_3:60091612-60091631 Msa0652370:CDS 50.0%
TGTTGCTCCTACTAGGTGCA+TGG - chr4_3:60091622-60091641 None:intergenic 50.0%
TCCTGAGATTAGGCGTACTC+CGG + chr4_3:60091923-60091942 Msa0652370:intron 50.0%
ATGAAGCACGGATACGGACA+CGG - chr4_3:60092187-60092206 None:intergenic 50.0%
TGTCCGTATCCGTGCTTCAT+AGG + chr4_3:60092187-60092206 Msa0652370:intron 50.0%
GTGGTGTAGGTTCAATGGAG+AGG + chr4_3:60092296-60092315 Msa0652370:intron 50.0%
! TCGTGTCGATGAGCACTTGA+AGG + chr4_3:60092687-60092706 Msa0652370:intron 50.0%
GTTGTGTGGGTAACTAAGGG+GGG + chr4_3:60092827-60092846 Msa0652370:intron 50.0%
CCCTACTCGATGTGTGAAAG+AGG - chr4_3:60093647-60093666 None:intergenic 50.0%
AGATGCACAGGGGTGATTCT+AGG - chr4_3:60093692-60093711 None:intergenic 50.0%
AGGGGAAAAGAGATGCACAG+GGG - chr4_3:60093702-60093721 None:intergenic 50.0%
CTCTTCGATCCGTGACTATG+GGG - chr4_3:60094279-60094298 None:intergenic 50.0%
GCTCTTCGATCCGTGACTAT+GGG - chr4_3:60094280-60094299 None:intergenic 50.0%
TGCTCTTCGATCCGTGACTA+TGG - chr4_3:60094281-60094300 None:intergenic 50.0%
CCTCATGTCTCCTTGGTTAG+GGG - chr4_3:60094525-60094544 None:intergenic 50.0%
GGAGAATCCTCATGTCTCCT+TGG - chr4_3:60094532-60094551 None:intergenic 50.0%
GATTGAGGGCCTGTTTGGTT+TGG - chr4_3:60095971-60095990 None:intergenic 50.0%
GATGATACTGCGCAGGACTA+TGG + chr4_3:60096931-60096950 Msa0652370:intron 50.0%
! TGTTGGTAGAGTGCTTACGC+TGG + chr4_3:60097008-60097027 Msa0652370:CDS 50.0%
ACGCTGGACTCCATAAATGC+TGG + chr4_3:60097024-60097043 Msa0652370:CDS 50.0%
! TCTTCAACTCGTGGCATTGG+TGG + chr4_3:60097076-60097095 Msa0652370:CDS 50.0%
ACCCACAAGGGAGATTCACA+AGG + chr4_3:60097099-60097118 Msa0652370:CDS 50.0%
CCCTTGTGAATCTCCCTTGT+GGG - chr4_3:60097103-60097122 None:intergenic 50.0%
CCCACAAGGGAGATTCACAA+GGG + chr4_3:60097100-60097119 Msa0652370:CDS 50.0%
ACCCTTGTGAATCTCCCTTG+TGG - chr4_3:60097104-60097123 None:intergenic 50.0%
AGTGAAGGACATGGACCGTT+TGG + chr4_3:60097587-60097606 Msa0652370:CDS 50.0%
! ATTGACCACTTGGGCTGGAT+GGG + chr4_3:60097626-60097645 Msa0652370:CDS 50.0%
TCTCCTTGAATTTAGGGGCC+GGG + chr4_3:60097808-60097827 Msa0652370:intron 50.0%
AATCCCGGCCCCTAAATTCA+AGG - chr4_3:60097814-60097833 None:intergenic 50.0%
TTGAATTTAGGGGCCGGGAT+TGG + chr4_3:60097813-60097832 Msa0652370:intron 50.0%
TCGCTGCTACATGTCTTCCT+TGG - chr4_3:60097845-60097864 None:intergenic 50.0%
AGCGAAGTTGAACCAGTACC+TGG + chr4_3:60097860-60097879 Msa0652370:CDS 50.0%
GCGAAGTTGAACCAGTACCT+GGG + chr4_3:60097861-60097880 Msa0652370:CDS 50.0%
!!! GGATATTTTGGCCCAGGTAC+TGG - chr4_3:60097875-60097894 None:intergenic 50.0%
CAGGCAATGACTGTAGTCAC+TGG + chr4_3:60098032-60098051 Msa0652370:CDS 50.0%
AAGTATCAGGCAGTCCTGGT+AGG - chr4_3:60098060-60098079 None:intergenic 50.0%
TACCAGGACTGCCTGATACT+TGG + chr4_3:60098059-60098078 Msa0652370:CDS 50.0%
TTCCAAGTATCAGGCAGTCC+TGG - chr4_3:60098064-60098083 None:intergenic 50.0%
GCATGGACACAAGGAGAGCT+AGG - chr4_3:60091605-60091624 None:intergenic 55.0%
ACCGGAGTACGCCTAATCTC+AGG - chr4_3:60091927-60091946 None:intergenic 55.0%
GATTAGGCGTACTCCGGTGT+CGG + chr4_3:60091929-60091948 Msa0652370:intron 55.0%
TCGATCCGTGACTATGGGGT+GGG - chr4_3:60094275-60094294 None:intergenic 55.0%
TTCGATCCGTGACTATGGGG+TGG - chr4_3:60094276-60094295 None:intergenic 55.0%
TCTCCTACCACCCCTAACCA+AGG + chr4_3:60094512-60094531 Msa0652370:intron 55.0%
TCTCCTTGGTTAGGGGTGGT+AGG - chr4_3:60094518-60094537 None:intergenic 55.0%
CATGTCTCCTTGGTTAGGGG+TGG - chr4_3:60094522-60094541 None:intergenic 55.0%
CCCCTAACCAAGGAGACATG+AGG + chr4_3:60094522-60094541 Msa0652370:intron 55.0%
CTAGACAGTCTGTGAGGGAG+AGG + chr4_3:60096249-60096268 Msa0652370:intron 55.0%
!! TGGCATTGGTGGACCCACAA+GGG + chr4_3:60097087-60097106 Msa0652370:CDS 55.0%
AAGGGATTGACCACTTGGGC+TGG + chr4_3:60097621-60097640 Msa0652370:CDS 55.0%
! GATTGACCACTTGGGCTGGA+TGG + chr4_3:60097625-60097644 Msa0652370:CDS 55.0%
ATCAACCCATCCAGCCCAAG+TGG - chr4_3:60097634-60097653 None:intergenic 55.0%
GCCGGGATTGGAATGAACCA+AGG + chr4_3:60097825-60097844 Msa0652370:CDS 55.0%
ACCTGGGCCAAAATATCCGG+CGG + chr4_3:60097877-60097896 Msa0652370:CDS 55.0%
! GGTAGAGCCGCCGGATATTT+TGG - chr4_3:60097887-60097906 None:intergenic 55.0%
TGTAGTCACTGGTGCCTACC+AGG + chr4_3:60098043-60098062 Msa0652370:CDS 55.0%
ACACGACACGTGTCCGACAC+CGG - chr4_3:60091945-60091964 None:intergenic 60.0%
ACGGATACGGACACGGACAC+CGG - chr4_3:60092180-60092199 None:intergenic 60.0%
GTCTCCCCACCCCATAGTCA+CGG + chr4_3:60094267-60094286 Msa0652370:intron 60.0%
CGATCCGTGACTATGGGGTG+GGG - chr4_3:60094274-60094293 None:intergenic 60.0%
!! GTGGCATTGGTGGACCCACA+AGG + chr4_3:60097086-60097105 Msa0652370:CDS 60.0%
CGGCGTGTCAGTGTCGTGTC+CGG + chr4_3:60092158-60092177 Msa0652370:intron 65.0%
!!! GCCGCCGGATATTTTGGCCC+AGG - chr4_3:60097881-60097900 None:intergenic 65.0%
GCTTCAGGAGGTAGAGCCGC+CGG - chr4_3:60097896-60097915 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 60091211 60098280 60091211 ID=Msa0652370;Name=Msa0652370
chr4_3 mRNA 60091211 60098280 60091211 ID=Msa0652370-mRNA-1;Parent=Msa0652370;Name=Msa0652370-mRNA-1;_AED=0.30;_eAED=0.30;_QI=347|1|1|1|0.8|0.66|6|137|364
chr4_3 exon 60091211 60091853 60091211 ID=Msa0652370-mRNA-1:exon:16270;Parent=Msa0652370-mRNA-1
chr4_3 exon 60092305 60092476 60092305 ID=Msa0652370-mRNA-1:exon:16271;Parent=Msa0652370-mRNA-1
chr4_3 exon 60096946 60097121 60096946 ID=Msa0652370-mRNA-1:exon:16272;Parent=Msa0652370-mRNA-1
chr4_3 exon 60097557 60097715 60097557 ID=Msa0652370-mRNA-1:exon:16273;Parent=Msa0652370-mRNA-1
chr4_3 exon 60097823 60098143 60097823 ID=Msa0652370-mRNA-1:exon:16274;Parent=Msa0652370-mRNA-1
chr4_3 exon 60098173 60098280 60098173 ID=Msa0652370-mRNA-1:exon:16275;Parent=Msa0652370-mRNA-1
chr4_3 five_prime_UTR 60091211 60091557 60091211 ID=Msa0652370-mRNA-1:five_prime_utr;Parent=Msa0652370-mRNA-1
chr4_3 CDS 60091558 60091853 60091558 ID=Msa0652370-mRNA-1:cds;Parent=Msa0652370-mRNA-1
chr4_3 CDS 60092305 60092476 60092305 ID=Msa0652370-mRNA-1:cds;Parent=Msa0652370-mRNA-1
chr4_3 CDS 60096946 60097121 60096946 ID=Msa0652370-mRNA-1:cds;Parent=Msa0652370-mRNA-1
chr4_3 CDS 60097557 60097715 60097557 ID=Msa0652370-mRNA-1:cds;Parent=Msa0652370-mRNA-1
chr4_3 CDS 60097823 60098114 60097823 ID=Msa0652370-mRNA-1:cds;Parent=Msa0652370-mRNA-1
chr4_3 three_prime_UTR 60098115 60098143 60098115 ID=Msa0652370-mRNA-1:three_prime_utr;Parent=Msa0652370-mRNA-1
chr4_3 three_prime_UTR 60098173 60098280 60098173 ID=Msa0652370-mRNA-1:three_prime_utr;Parent=Msa0652370-mRNA-1
Gene Sequence

>Msa0652370

ATGGGCTTCAATGTCCATAAATTGTTTTTCCTCTCTTACTTTACCCTAGCTCTCCTTGTGTCCATGCACCTAGTAGGAGCAACAAAGTCACATAAAGTGAGTCCTTCAAAAAGGAGAAAACAATTAAACAATTGTAATTTGTTCTCTGGTAGTTGGGTGATTGGCTCTTCATATACTCTTTATGATTCTTCAAGCTGCCCCTTCTTAGAAGCTCAATTTGATTGCCAAAAATTTGGAAGACCTGATAATCAGTATCTTAAATACTCTTGGAAGCCTGATTCATGTGCTTTACCGAGGTTCAATGGAGAGGATTTCTTGAATAGATGGAAGGGAAAAAAGATAATGTTTGTGGGTGATTCATTGAGTCTAAACATGTGGGAATCATTGTCTTGTATGATTCATGCATCGGTACCAAATGCCACTACAAGCTTTTCTAGGAAAGAATCAGTGTCTACTGTGATTTTCCAGGACTATGGAGTAACCATACAACTATACCGTACACCATATTTGGTGGACATAATTCAGCAAGGTGTTGGTAGAGTGCTTACGCTGGACTCCATAAATGCTGGTAAGGCATGGATTGATATGGACATGTTGATCTTCAACTCGTGGCATTGGTGGACCCACAAGGGAGATTCACAAGGCTGGGATTTTATTAAAGATGGTCCCAATCTAGTGAAGGACATGGACCGTTTGGATGCATTTTATAAGGGATTGACCACTTGGGCTGGATGGGTTGATGCCAATGTTGACCCTACCAAAACTAAAGTCTTCTTTCAAGGAATTTCCCCTACTCATTATCAGGGCCGGGATTGGAATGAACCAAGGAAGACATGTAGCAGCGAAGTTGAACCAGTACCTGGGCCAAAATATCCGGCGGCTCTACCTCCTGAAGCTGATGTAGTGAACAGAGTGTTGAAGAACATGAAGAAGCAGGTTTATCTTCTTGACATAACATTACTCTCACAACTAAGAAAAGATGGACATCCTTCTATCTATACTAAGGATCATACAGGCAATGACTGTAGTCACTGGTGCCTACCAGGACTGCCTGATACTTGGAACATACTCCTAAATGCAGCTCTAACAATGTGA
Protein sequence

>Msa0652370

MGFNVHKLFFLSYFTLALLVSMHLVGATKSHKVSPSKRRKQLNNCNLFSGSWVIGSSYTLYDSSSCPFLEAQFDCQKFGRPDNQYLKYSWKPDSCALPRFNGEDFLNRWKGKKIMFVGDSLSLNMWESLSCMIHASVPNATTSFSRKESVSTVIFQDYGVTIQLYRTPYLVDIIQQGVGRVLTLDSINAGKAWIDMDMLIFNSWHWWTHKGDSQGWDFIKDGPNLVKDMDRLDAFYKGLTTWAGWVDANVDPTKTKVFFQGISPTHYQGRDWNEPRKTCSSEVEPVPGPKYPAALPPEADVVNRVLKNMKKQVYLLDITLLSQLRKDGHPSIYTKDHTGNDCSHWCLPGLPDTWNILLNAALTM*