AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0657030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0657030 MtrunA17_Chr8g0379051 91.358 81 5 1 1 79 1 81 1.31e-46 144
Msa0657030 MtrunA17_Chr4g0012821 92.405 79 6 0 1 79 1 79 5.05e-40 126
Msa0657030 MtrunA17_Chr1g0191471 60.000 80 24 1 5 76 21 100 6.96e-25 89.4
Msa0657030 MtrunA17_Chr2g0326321 60.976 82 26 1 4 79 21 102 3.57e-24 87.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0657030 AT3G60540.2 80.769 78 14 1 4 80 3 80 3.44e-34 112
Msa0657030 AT3G60540.3 80.769 78 14 1 4 80 3 80 3.44e-34 112
Msa0657030 AT3G60540.1 80.769 78 14 1 4 80 3 80 3.44e-34 112
Msa0657030 AT2G45070.1 82.500 80 10 1 4 79 3 82 3.54e-32 107
Msa0657030 AT2G45070.4 82.500 80 10 1 4 79 3 82 3.54e-32 107
Msa0657030 AT2G45070.2 82.500 80 10 1 4 79 3 82 3.54e-32 107
Msa0657030 AT2G45070.3 82.500 80 10 1 4 79 3 82 3.54e-32 107
Msa0657030 AT5G60460.2 58.621 87 28 1 2 80 19 105 3.37e-23 85.5
Msa0657030 AT5G60460.1 58.621 87 28 1 2 80 19 105 3.37e-23 85.5

Find 46 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCTGCTGCACTTCCTCTTT+GGG 0.153735 4_3:+66476021 None:intergenic
TCGCTGCTGCACTTCCTCTT+TGG 0.195557 4_3:+66476020 None:intergenic
ACACCCGGTGGTGGGGCATC+TGG 0.275877 4_3:-66475974 Msa0657030:CDS
GGGGCATCTGGAGGAGCTGC+AGG 0.292492 4_3:-66475962 Msa0657030:CDS
ACTTGATACAATCATCCTTT+TGG 0.324642 4_3:-66475695 Msa0657030:three_prime_UTR
AGAGAATACAATATGAAGTT+AGG 0.340470 4_3:-66475799 Msa0657030:three_prime_UTR
CTCATCACAAGAACCACATT+TGG 0.388681 4_3:+66475890 None:intergenic
TATGAAGTTAGGTTCGTTAT+GGG 0.391775 4_3:-66475788 Msa0657030:three_prime_UTR
TCATCACAAGAACCACATTT+GGG 0.392066 4_3:+66475891 None:intergenic
GTGTTTCAGAAAATGGCTTC+AGG 0.402843 4_3:-66476055 Msa0657030:intron
ATATGAAGTTAGGTTCGTTA+TGG 0.404423 4_3:-66475789 Msa0657030:three_prime_UTR
GTTGCCATCCTTCATGTGAT+TGG 0.409593 4_3:-66475848 Msa0657030:CDS
TCCTCCAGATGCCCCACCAC+CGG 0.423552 4_3:+66475970 None:intergenic
TGAACTAGCAGCGACGTGTT+TGG 0.454587 4_3:-66475626 Msa0657030:three_prime_UTR
CTGGTACAATGTTATGGCCA+AGG 0.478673 4_3:-66475652 Msa0657030:three_prime_UTR
AGAAGAAATAAATGACCAAA+AGG 0.479134 4_3:+66475680 None:intergenic
GGGCATCTGGAGGAGCTGCA+GGG 0.495153 4_3:-66475961 Msa0657030:CDS
TGTTACCTCTGCTGTGGAAA+CGG 0.501593 4_3:+66476967 None:intergenic
CGACTGCAAGCATGAGAAGA+AGG 0.502053 4_3:-66476000 Msa0657030:CDS
AGAAGGAAGACACCCGGTGG+TGG 0.513757 4_3:-66475983 Msa0657030:CDS
TTTGGGGAGATCTTGAGTCC+AGG 0.515537 4_3:+66475908 None:intergenic
CCCGGTGGTGGGGCATCTGG+AGG 0.518412 4_3:-66475971 Msa0657030:CDS
CCTCCAGATGCCCCACCACC+GGG 0.523682 4_3:+66475971 None:intergenic
GCTGCTGCACTTCCTCTTTG+GGG 0.527227 4_3:+66476022 None:intergenic
GTGGTTCTTGTGATGAGCAT+TGG 0.535637 4_3:-66475884 Msa0657030:CDS
GAAGGAAGACACCCGGTGGT+GGG 0.541352 4_3:-66475982 Msa0657030:CDS
TTGGGGAGATCTTGAGTCCA+GGG 0.546700 4_3:+66475909 None:intergenic
TGGCAAGTTGTACTTGCGTA+AGG 0.559707 4_3:-66475828 Msa0657030:CDS
GGTGGAGCAGCTCCCCAAAG+AGG 0.584751 4_3:-66476034 Msa0657030:CDS
CAAGTTGTACTTGCGTAAGG+AGG 0.591387 4_3:-66475825 Msa0657030:CDS
AAGGAAGACACCCGGTGGTG+GGG 0.594885 4_3:-66475981 Msa0657030:CDS
ATGAAGTTAGGTTCGTTATG+GGG 0.606908 4_3:-66475787 Msa0657030:three_prime_UTR
TTTCAGAAAATGGCTTCAGG+TGG 0.611619 4_3:-66476052 Msa0657030:intron
GAGTGTTGTTACCTCTGCTG+TGG 0.615767 4_3:+66476961 None:intergenic
ACAACTTGCCAATCACATGA+AGG 0.616873 4_3:+66475840 None:intergenic
TCGCTGCTAGTTCAAAACCT+TGG 0.619534 4_3:+66475635 None:intergenic
CTTGCCAATCACATGAAGGA+TGG 0.620482 4_3:+66475844 None:intergenic
ACTCAAGATCTCCCCAAATG+TGG 0.630953 4_3:-66475903 Msa0657030:CDS
TCAACTGCAAAGATAAATCG+AGG 0.641925 4_3:+66477001 None:intergenic
TGGGGAGATCTTGAGTCCAG+GGG 0.642908 4_3:+66475910 None:intergenic
AAAGATAAATCGAGGGACAG+AGG 0.653147 4_3:+66477009 None:intergenic
GAACTCCGTTTCCACAGCAG+AGG 0.662903 4_3:-66476972 Msa0657030:intron
ATGAGAAGAAGGAAGACACC+CGG 0.674561 4_3:-66475989 Msa0657030:CDS
CATCACAAGAACCACATTTG+GGG 0.690194 4_3:+66475892 None:intergenic
CAACTGCAAAGATAAATCGA+GGG 0.696467 4_3:+66477002 None:intergenic
AGAAGAAGGAAGACACCCGG+TGG 0.765392 4_3:-66475986 Msa0657030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACCATAAAATTTTAATTAAT+CGG + chr4_3:66476305-66476324 None:intergenic 10.0%
!!! ACCATAAAATTTTAATTAAT+CGG + chr4_3:66476305-66476324 None:intergenic 10.0%
!!! AATTGTTAGAAATTTTGTTT+TGG - chr4_3:66476031-66476050 Msa0657030:CDS 15.0%
!!! TTATTGAATGATCATTTTTA+GGG - chr4_3:66476235-66476254 Msa0657030:intron 15.0%
!!! ACCGATTAATTAAAATTTTA+TGG - chr4_3:66476301-66476320 Msa0657030:intron 15.0%
!!! TTTTTTAACAATATGTTTTG+AGG - chr4_3:66476861-66476880 Msa0657030:intron 15.0%
!!! TAATTAACTATGATTTTGTT+TGG - chr4_3:66477018-66477037 Msa0657030:five_prime_UTR 15.0%
!!! AATTGTTAGAAATTTTGTTT+TGG - chr4_3:66476031-66476050 Msa0657030:CDS 15.0%
!!! TTATTGAATGATCATTTTTA+GGG - chr4_3:66476235-66476254 Msa0657030:intron 15.0%
!!! ACCGATTAATTAAAATTTTA+TGG - chr4_3:66476301-66476320 Msa0657030:intron 15.0%
!!! TTTTTTAACAATATGTTTTG+AGG - chr4_3:66476861-66476880 Msa0657030:intron 15.0%
!!! TAATTAACTATGATTTTGTT+TGG - chr4_3:66477018-66477037 Msa0657030:five_prime_UTR 15.0%
!!! ATGTTTTAGTTGTGTAATTA+TGG - chr4_3:66475926-66475945 Msa0657030:CDS 20.0%
!!! CTTATTGAATGATCATTTTT+AGG - chr4_3:66476234-66476253 Msa0657030:intron 20.0%
!!! ATGGTTTGTTTGTTTATTTT+CGG - chr4_3:66476320-66476339 Msa0657030:intron 20.0%
!!! TTTATTTTCGGATATTGTTA+GGG - chr4_3:66476332-66476351 Msa0657030:intron 20.0%
!!! CATTTATTTCTTCTTTTATC+TGG - chr4_3:66476950-66476969 Msa0657030:intron 20.0%
!!! ATGTTTTAGTTGTGTAATTA+TGG - chr4_3:66475926-66475945 Msa0657030:CDS 20.0%
!!! CTTATTGAATGATCATTTTT+AGG - chr4_3:66476234-66476253 Msa0657030:intron 20.0%
!!! ATGGTTTGTTTGTTTATTTT+CGG - chr4_3:66476320-66476339 Msa0657030:intron 20.0%
!!! TTTATTTTCGGATATTGTTA+GGG - chr4_3:66476332-66476351 Msa0657030:intron 20.0%
!!! CATTTATTTCTTCTTTTATC+TGG - chr4_3:66476950-66476969 Msa0657030:intron 20.0%
! ATTGAATAAAAGAGACAAAG+TGG + chr4_3:66475688-66475707 None:intergenic 25.0%
! AACCAAATAAATCCACAAAT+CGG + chr4_3:66475818-66475837 None:intergenic 25.0%
! CTTATTTATGCTCATCTATT+TGG - chr4_3:66475974-66475993 Msa0657030:CDS 25.0%
!!! GTTTATTTTCGGATATTGTT+AGG - chr4_3:66476331-66476350 Msa0657030:intron 25.0%
!! AACCGAACAGTTTTTAATAT+CGG + chr4_3:66476394-66476413 None:intergenic 25.0%
! AATACATGTGTTTCAGAAAA+TGG - chr4_3:66476559-66476578 Msa0657030:intron 25.0%
! AGAGAATACAATATGAAGTT+AGG - chr4_3:66476822-66476841 Msa0657030:intron 25.0%
! AGAAGAAATAAATGACCAAA+AGG + chr4_3:66476944-66476963 None:intergenic 25.0%
!! TTTTATCTGGTACAATGTTA+TGG - chr4_3:66476963-66476982 Msa0657030:intron 25.0%
! ATTGAATAAAAGAGACAAAG+TGG + chr4_3:66475688-66475707 None:intergenic 25.0%
! AACCAAATAAATCCACAAAT+CGG + chr4_3:66475818-66475837 None:intergenic 25.0%
! CTTATTTATGCTCATCTATT+TGG - chr4_3:66475974-66475993 Msa0657030:CDS 25.0%
!!! GTTTATTTTCGGATATTGTT+AGG - chr4_3:66476331-66476350 Msa0657030:intron 25.0%
!! AACCGAACAGTTTTTAATAT+CGG + chr4_3:66476394-66476413 None:intergenic 25.0%
! AATACATGTGTTTCAGAAAA+TGG - chr4_3:66476559-66476578 Msa0657030:intron 25.0%
! AGAGAATACAATATGAAGTT+AGG - chr4_3:66476822-66476841 Msa0657030:intron 25.0%
! AGAAGAAATAAATGACCAAA+AGG + chr4_3:66476944-66476963 None:intergenic 25.0%
!! TTTTATCTGGTACAATGTTA+TGG - chr4_3:66476963-66476982 Msa0657030:intron 25.0%
AAGTCAAAGCATGAAGATTA+AGG + chr4_3:66475763-66475782 None:intergenic 30.0%
!! TGTTTTGAATTGCTTTCGAT+CGG - chr4_3:66475782-66475801 Msa0657030:three_prime_UTR 30.0%
! ATCCGATTTGTGGATTTATT+TGG - chr4_3:66475813-66475832 Msa0657030:exon 30.0%
! ATGCTCATCTATTTGGTTTA+AGG - chr4_3:66475981-66476000 Msa0657030:CDS 30.0%
! TGCTCATCTATTTGGTTTAA+GGG - chr4_3:66475982-66476001 Msa0657030:CDS 30.0%
ACATGGTCATTCATGAAAAT+TGG + chr4_3:66476144-66476163 None:intergenic 30.0%
! TATCAACACAAAAGCATACA+TGG + chr4_3:66476161-66476180 None:intergenic 30.0%
AGGGTTTGTAATTGTTTAGT+TGG - chr4_3:66476254-66476273 Msa0657030:intron 30.0%
GGGTTTGTAATTGTTTAGTT+GGG - chr4_3:66476255-66476274 Msa0657030:intron 30.0%
TGCCGATATTAAAAACTGTT+CGG - chr4_3:66476389-66476408 Msa0657030:intron 30.0%
! GTTGTGCATTACATTTTCAT+TGG - chr4_3:66476517-66476536 Msa0657030:intron 30.0%
ATATGAAGTTAGGTTCGTTA+TGG - chr4_3:66476832-66476851 Msa0657030:intron 30.0%
TATGAAGTTAGGTTCGTTAT+GGG - chr4_3:66476833-66476852 Msa0657030:intron 30.0%
! ACTTGATACAATCATCCTTT+TGG - chr4_3:66476926-66476945 Msa0657030:intron 30.0%
AAGTCAAAGCATGAAGATTA+AGG + chr4_3:66475763-66475782 None:intergenic 30.0%
!! TGTTTTGAATTGCTTTCGAT+CGG - chr4_3:66475782-66475801 Msa0657030:three_prime_UTR 30.0%
! ATCCGATTTGTGGATTTATT+TGG - chr4_3:66475813-66475832 Msa0657030:exon 30.0%
! ATGCTCATCTATTTGGTTTA+AGG - chr4_3:66475981-66476000 Msa0657030:CDS 30.0%
! TGCTCATCTATTTGGTTTAA+GGG - chr4_3:66475982-66476001 Msa0657030:CDS 30.0%
ACATGGTCATTCATGAAAAT+TGG + chr4_3:66476144-66476163 None:intergenic 30.0%
! TATCAACACAAAAGCATACA+TGG + chr4_3:66476161-66476180 None:intergenic 30.0%
AGGGTTTGTAATTGTTTAGT+TGG - chr4_3:66476254-66476273 Msa0657030:intron 30.0%
GGGTTTGTAATTGTTTAGTT+GGG - chr4_3:66476255-66476274 Msa0657030:intron 30.0%
TGCCGATATTAAAAACTGTT+CGG - chr4_3:66476389-66476408 Msa0657030:intron 30.0%
! GTTGTGCATTACATTTTCAT+TGG - chr4_3:66476517-66476536 Msa0657030:intron 30.0%
ATATGAAGTTAGGTTCGTTA+TGG - chr4_3:66476832-66476851 Msa0657030:intron 30.0%
TATGAAGTTAGGTTCGTTAT+GGG - chr4_3:66476833-66476852 Msa0657030:intron 30.0%
! ACTTGATACAATCATCCTTT+TGG - chr4_3:66476926-66476945 Msa0657030:intron 30.0%
CAACTGCAAAGATAAATCGA+GGG + chr4_3:66475622-66475641 None:intergenic 35.0%
TCAACTGCAAAGATAAATCG+AGG + chr4_3:66475623-66475642 None:intergenic 35.0%
GTTATCCGATGATGTTTCTT+CGG - chr4_3:66475729-66475748 Msa0657030:three_prime_UTR 35.0%
AAAAGCCGAAGAAACATCAT+CGG + chr4_3:66475737-66475756 None:intergenic 35.0%
TCTTGATACATTCCTAGATC+TGG - chr4_3:66475852-66475871 Msa0657030:CDS 35.0%
! AGTCTAAAATCACCAGATCT+AGG + chr4_3:66475867-66475886 None:intergenic 35.0%
TTGTAATTGTTTAGTTGGGC+AGG - chr4_3:66476259-66476278 Msa0657030:intron 35.0%
TTTCGGATATTGTTAGGGTT+AGG - chr4_3:66476337-66476356 Msa0657030:intron 35.0%
TTCGGATATTGTTAGGGTTA+GGG - chr4_3:66476338-66476357 Msa0657030:intron 35.0%
! CAGATGATAGGTAGTAGTTT+TGG + chr4_3:66476481-66476500 None:intergenic 35.0%
TCATATGAGCAACAGATGAT+AGG + chr4_3:66476493-66476512 None:intergenic 35.0%
TCATCACAAGAACCACATTT+GGG + chr4_3:66476733-66476752 None:intergenic 35.0%
ATGAAGTTAGGTTCGTTATG+GGG - chr4_3:66476834-66476853 Msa0657030:intron 35.0%
CAACTGCAAAGATAAATCGA+GGG + chr4_3:66475622-66475641 None:intergenic 35.0%
TCAACTGCAAAGATAAATCG+AGG + chr4_3:66475623-66475642 None:intergenic 35.0%
GTTATCCGATGATGTTTCTT+CGG - chr4_3:66475729-66475748 Msa0657030:three_prime_UTR 35.0%
AAAAGCCGAAGAAACATCAT+CGG + chr4_3:66475737-66475756 None:intergenic 35.0%
TCTTGATACATTCCTAGATC+TGG - chr4_3:66475852-66475871 Msa0657030:CDS 35.0%
! AGTCTAAAATCACCAGATCT+AGG + chr4_3:66475867-66475886 None:intergenic 35.0%
TTGTAATTGTTTAGTTGGGC+AGG - chr4_3:66476259-66476278 Msa0657030:intron 35.0%
TTTCGGATATTGTTAGGGTT+AGG - chr4_3:66476337-66476356 Msa0657030:intron 35.0%
TTCGGATATTGTTAGGGTTA+GGG - chr4_3:66476338-66476357 Msa0657030:intron 35.0%
! CAGATGATAGGTAGTAGTTT+TGG + chr4_3:66476481-66476500 None:intergenic 35.0%
TCATATGAGCAACAGATGAT+AGG + chr4_3:66476493-66476512 None:intergenic 35.0%
TCATCACAAGAACCACATTT+GGG + chr4_3:66476733-66476752 None:intergenic 35.0%
ATGAAGTTAGGTTCGTTATG+GGG - chr4_3:66476834-66476853 Msa0657030:intron 35.0%
AAAGATAAATCGAGGGACAG+AGG + chr4_3:66475615-66475634 None:intergenic 40.0%
! GGGTTGTGATTTTGTGTCAT+AGG - chr4_3:66476002-66476021 Msa0657030:CDS 40.0%
CCTTATCCTATCTACTGCAA+AGG + chr4_3:66476366-66476385 None:intergenic 40.0%
CCTTTGCAGTAGATAGGATA+AGG - chr4_3:66476363-66476382 Msa0657030:intron 40.0%
CCAACATAACGATCAATCTC+AGG + chr4_3:66476423-66476442 None:intergenic 40.0%
CCTGAGATTGATCGTTATGT+TGG - chr4_3:66476420-66476439 Msa0657030:intron 40.0%
GAGATTGATCGTTATGTTGG+AGG - chr4_3:66476423-66476442 Msa0657030:intron 40.0%
TTGATCGTTATGTTGGAGGA+AGG - chr4_3:66476427-66476446 Msa0657030:intron 40.0%
!!! TGATAGGTAGTAGTTTTGGC+AGG + chr4_3:66476477-66476496 None:intergenic 40.0%
GTGTTTCAGAAAATGGCTTC+AGG - chr4_3:66476566-66476585 Msa0657030:intron 40.0%
TTTCAGAAAATGGCTTCAGG+TGG - chr4_3:66476569-66476588 Msa0657030:intron 40.0%
CATCACAAGAACCACATTTG+GGG + chr4_3:66476732-66476751 None:intergenic 40.0%
CTCATCACAAGAACCACATT+TGG + chr4_3:66476734-66476753 None:intergenic 40.0%
ACAACTTGCCAATCACATGA+AGG + chr4_3:66476784-66476803 None:intergenic 40.0%
AAAGATAAATCGAGGGACAG+AGG + chr4_3:66475615-66475634 None:intergenic 40.0%
! GGGTTGTGATTTTGTGTCAT+AGG - chr4_3:66476002-66476021 Msa0657030:CDS 40.0%
CCTTATCCTATCTACTGCAA+AGG + chr4_3:66476366-66476385 None:intergenic 40.0%
CCTTTGCAGTAGATAGGATA+AGG - chr4_3:66476363-66476382 Msa0657030:intron 40.0%
CCAACATAACGATCAATCTC+AGG + chr4_3:66476423-66476442 None:intergenic 40.0%
CCTGAGATTGATCGTTATGT+TGG - chr4_3:66476420-66476439 Msa0657030:intron 40.0%
GAGATTGATCGTTATGTTGG+AGG - chr4_3:66476423-66476442 Msa0657030:intron 40.0%
TTGATCGTTATGTTGGAGGA+AGG - chr4_3:66476427-66476446 Msa0657030:intron 40.0%
!!! TGATAGGTAGTAGTTTTGGC+AGG + chr4_3:66476477-66476496 None:intergenic 40.0%
GTGTTTCAGAAAATGGCTTC+AGG - chr4_3:66476566-66476585 Msa0657030:intron 40.0%
TTTCAGAAAATGGCTTCAGG+TGG - chr4_3:66476569-66476588 Msa0657030:intron 40.0%
CATCACAAGAACCACATTTG+GGG + chr4_3:66476732-66476751 None:intergenic 40.0%
CTCATCACAAGAACCACATT+TGG + chr4_3:66476734-66476753 None:intergenic 40.0%
ACAACTTGCCAATCACATGA+AGG + chr4_3:66476784-66476803 None:intergenic 40.0%
TGTTACCTCTGCTGTGGAAA+CGG + chr4_3:66475657-66475676 None:intergenic 45.0%
ATGAGAAGAAGGAAGACACC+CGG - chr4_3:66476632-66476651 Msa0657030:intron 45.0%
!! TTTTACACTGATGATGCCCC+TGG - chr4_3:66476695-66476714 Msa0657030:intron 45.0%
ACTCAAGATCTCCCCAAATG+TGG - chr4_3:66476718-66476737 Msa0657030:intron 45.0%
GTGGTTCTTGTGATGAGCAT+TGG - chr4_3:66476737-66476756 Msa0657030:intron 45.0%
GTTGCCATCCTTCATGTGAT+TGG - chr4_3:66476773-66476792 Msa0657030:intron 45.0%
CTTGCCAATCACATGAAGGA+TGG + chr4_3:66476780-66476799 None:intergenic 45.0%
TGGCAAGTTGTACTTGCGTA+AGG - chr4_3:66476793-66476812 Msa0657030:intron 45.0%
CAAGTTGTACTTGCGTAAGG+AGG - chr4_3:66476796-66476815 Msa0657030:intron 45.0%
CTGGTACAATGTTATGGCCA+AGG - chr4_3:66476969-66476988 Msa0657030:intron 45.0%
TCGCTGCTAGTTCAAAACCT+TGG + chr4_3:66476989-66477008 None:intergenic 45.0%
TGTTACCTCTGCTGTGGAAA+CGG + chr4_3:66475657-66475676 None:intergenic 45.0%
ATGAGAAGAAGGAAGACACC+CGG - chr4_3:66476632-66476651 Msa0657030:intron 45.0%
!! TTTTACACTGATGATGCCCC+TGG - chr4_3:66476695-66476714 Msa0657030:intron 45.0%
ACTCAAGATCTCCCCAAATG+TGG - chr4_3:66476718-66476737 Msa0657030:intron 45.0%
GTGGTTCTTGTGATGAGCAT+TGG - chr4_3:66476737-66476756 Msa0657030:intron 45.0%
GTTGCCATCCTTCATGTGAT+TGG - chr4_3:66476773-66476792 Msa0657030:intron 45.0%
CTTGCCAATCACATGAAGGA+TGG + chr4_3:66476780-66476799 None:intergenic 45.0%
TGGCAAGTTGTACTTGCGTA+AGG - chr4_3:66476793-66476812 Msa0657030:intron 45.0%
CAAGTTGTACTTGCGTAAGG+AGG - chr4_3:66476796-66476815 Msa0657030:intron 45.0%
CTGGTACAATGTTATGGCCA+AGG - chr4_3:66476969-66476988 Msa0657030:intron 45.0%
TCGCTGCTAGTTCAAAACCT+TGG + chr4_3:66476989-66477008 None:intergenic 45.0%
! GAGTGTTGTTACCTCTGCTG+TGG + chr4_3:66475663-66475682 None:intergenic 50.0%
! GGTGATTGCGATCCGATTTG+TGG - chr4_3:66475803-66475822 Msa0657030:exon 50.0%
GGGCAGGAGAAAAAACAGAG+TGG - chr4_3:66476275-66476294 Msa0657030:intron 50.0%
AGGGCTCCTTTGCAGTAGAT+AGG - chr4_3:66476357-66476376 Msa0657030:intron 50.0%
CGACTGCAAGCATGAGAAGA+AGG - chr4_3:66476621-66476640 Msa0657030:intron 50.0%
TTGGGGAGATCTTGAGTCCA+GGG + chr4_3:66476715-66476734 None:intergenic 50.0%
TTTGGGGAGATCTTGAGTCC+AGG + chr4_3:66476716-66476735 None:intergenic 50.0%
TGAACTAGCAGCGACGTGTT+TGG - chr4_3:66476995-66477014 Msa0657030:five_prime_UTR 50.0%
! GAGTGTTGTTACCTCTGCTG+TGG + chr4_3:66475663-66475682 None:intergenic 50.0%
! GGTGATTGCGATCCGATTTG+TGG - chr4_3:66475803-66475822 Msa0657030:exon 50.0%
GGGCAGGAGAAAAAACAGAG+TGG - chr4_3:66476275-66476294 Msa0657030:intron 50.0%
AGGGCTCCTTTGCAGTAGAT+AGG - chr4_3:66476357-66476376 Msa0657030:intron 50.0%
CGACTGCAAGCATGAGAAGA+AGG - chr4_3:66476621-66476640 Msa0657030:intron 50.0%
TTGGGGAGATCTTGAGTCCA+GGG + chr4_3:66476715-66476734 None:intergenic 50.0%
TTTGGGGAGATCTTGAGTCC+AGG + chr4_3:66476716-66476735 None:intergenic 50.0%
TGAACTAGCAGCGACGTGTT+TGG - chr4_3:66476995-66477014 Msa0657030:five_prime_UTR 50.0%
GAACTCCGTTTCCACAGCAG+AGG - chr4_3:66475649-66475668 Msa0657030:three_prime_UTR 55.0%
GCTGCTGCACTTCCTCTTTG+GGG + chr4_3:66476602-66476621 None:intergenic 55.0%
CGCTGCTGCACTTCCTCTTT+GGG + chr4_3:66476603-66476622 None:intergenic 55.0%
TCGCTGCTGCACTTCCTCTT+TGG + chr4_3:66476604-66476623 None:intergenic 55.0%
AGAAGAAGGAAGACACCCGG+TGG - chr4_3:66476635-66476654 Msa0657030:intron 55.0%
TGGGGAGATCTTGAGTCCAG+GGG + chr4_3:66476714-66476733 None:intergenic 55.0%
GAACTCCGTTTCCACAGCAG+AGG - chr4_3:66475649-66475668 Msa0657030:three_prime_UTR 55.0%
GCTGCTGCACTTCCTCTTTG+GGG + chr4_3:66476602-66476621 None:intergenic 55.0%
CGCTGCTGCACTTCCTCTTT+GGG + chr4_3:66476603-66476622 None:intergenic 55.0%
TCGCTGCTGCACTTCCTCTT+TGG + chr4_3:66476604-66476623 None:intergenic 55.0%
AGAAGAAGGAAGACACCCGG+TGG - chr4_3:66476635-66476654 Msa0657030:intron 55.0%
TGGGGAGATCTTGAGTCCAG+GGG + chr4_3:66476714-66476733 None:intergenic 55.0%
AGAAGGAAGACACCCGGTGG+TGG - chr4_3:66476638-66476657 Msa0657030:intron 60.0%
GAAGGAAGACACCCGGTGGT+GGG - chr4_3:66476639-66476658 Msa0657030:intron 60.0%
AAGGAAGACACCCGGTGGTG+GGG - chr4_3:66476640-66476659 Msa0657030:intron 60.0%
AGAAGGAAGACACCCGGTGG+TGG - chr4_3:66476638-66476657 Msa0657030:intron 60.0%
GAAGGAAGACACCCGGTGGT+GGG - chr4_3:66476639-66476658 Msa0657030:intron 60.0%
AAGGAAGACACCCGGTGGTG+GGG - chr4_3:66476640-66476659 Msa0657030:intron 60.0%
GGTGGAGCAGCTCCCCAAAG+AGG - chr4_3:66476587-66476606 Msa0657030:intron 65.0%
TCCTCCAGATGCCCCACCAC+CGG + chr4_3:66476654-66476673 None:intergenic 65.0%
GGGCATCTGGAGGAGCTGCA+GGG - chr4_3:66476660-66476679 Msa0657030:intron 65.0%
GGTGGAGCAGCTCCCCAAAG+AGG - chr4_3:66476587-66476606 Msa0657030:intron 65.0%
TCCTCCAGATGCCCCACCAC+CGG + chr4_3:66476654-66476673 None:intergenic 65.0%
GGGCATCTGGAGGAGCTGCA+GGG - chr4_3:66476660-66476679 Msa0657030:intron 65.0%
!! ACACCCGGTGGTGGGGCATC+TGG - chr4_3:66476647-66476666 Msa0657030:intron 70.0%
CCTCCAGATGCCCCACCACC+GGG + chr4_3:66476653-66476672 None:intergenic 70.0%
! GGGGCATCTGGAGGAGCTGC+AGG - chr4_3:66476659-66476678 Msa0657030:intron 70.0%
!! ACACCCGGTGGTGGGGCATC+TGG - chr4_3:66476647-66476666 Msa0657030:intron 70.0%
CCTCCAGATGCCCCACCACC+GGG + chr4_3:66476653-66476672 None:intergenic 70.0%
! GGGGCATCTGGAGGAGCTGC+AGG - chr4_3:66476659-66476678 Msa0657030:intron 70.0%
!! CCCGGTGGTGGGGCATCTGG+AGG - chr4_3:66476650-66476669 Msa0657030:intron 75.0%
!! CCCGGTGGTGGGGCATCTGG+AGG - chr4_3:66476650-66476669 Msa0657030:intron 75.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 66475593 66477050 66475593 ID=Msa0657030;Name=Msa0657030
chr4_3 mRNA 66475593 66477050 66475593 ID=Msa0657030-mRNA-1;Parent=Msa0657030;Name=Msa0657030-mRNA-1;_AED=0.01;_eAED=0.01;_QI=78|0|0.5|1|0|0.5|2|227|81
chr4_3 exon 66475593 66476065 66475593 ID=Msa0657030-mRNA-1:exon:19110;Parent=Msa0657030-mRNA-1
chr4_3 exon 66476973 66477050 66476973 ID=Msa0657030-mRNA-1:exon:19109;Parent=Msa0657030-mRNA-1
chr4_3 five_prime_UTR 66476973 66477050 66476973 ID=Msa0657030-mRNA-1:five_prime_utr;Parent=Msa0657030-mRNA-1
chr4_3 CDS 66475820 66476065 66475820 ID=Msa0657030-mRNA-1:cds;Parent=Msa0657030-mRNA-1
chr4_3 three_prime_UTR 66475593 66475819 66475593 ID=Msa0657030-mRNA-1:three_prime_utr;Parent=Msa0657030-mRNA-1
Gene Sequence

>Msa0657030

ATGGCTTCAGGTGGAGCAGCTCCCCAAAGAGGAAGTGCAGCAGCGACTGCAAGCATGAGAAGAAGGAAGACACCCGGTGGTGGGGCATCTGGAGGAGCTGCAGGGACTATGCTTCAGTTTTACACTGATGATGCCCCTGGACTCAAGATCTCCCCAAATGTGGTTCTTGTGATGAGCATTGGCTTTATAGCATTTGTTGCCATCCTTCATGTGATTGGCAAGTTGTACTTGCGTAAGGAGGCTTAG

Protein sequence

>Msa0657030

MASGGAAPQRGSAAATASMRRRKTPGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVIGKLYLRKEA*