Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0659390 | XP_003630311.1 | 91.880 | 702 | 46 | 2 | 1 | 692 | 1 | 701 | 0.0 | 1312 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0659390 | sp|Q9WTK3|GPAA1_MOUSE | 29.032 | 434 | 211 | 19 | 31 | 449 | 24 | 375 | 2.05e-25 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0659390 | G7LEX7 | 91.880 | 702 | 46 | 2 | 1 | 692 | 1 | 701 | 0.0 | 1312 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0659390 | Msa1299330 | 0.818968 | 1.485761e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0659390 | MtrunA17_Chr8g0384591 | 91.880 | 702 | 46 | 2 | 1 | 692 | 1 | 701 | 0.0 | 1312 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0659390 | AT5G19130.1 | 55.148 | 709 | 272 | 9 | 4 | 691 | 15 | 698 | 0.0 | 730 |
| Msa0659390 | AT5G19130.2 | 55.241 | 706 | 273 | 10 | 4 | 691 | 15 | 695 | 0.0 | 728 |
Find 182 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCAATATTGTAAATTATT+TGG | 0.021800 | 4_3:+69787494 | Msa0659390:CDS |
| CATGATTCCATTTGCATTAC+TGG | 0.124102 | 4_3:+69788629 | Msa0659390:CDS |
| GAACGAAAAGATAATGATTT+TGG | 0.135468 | 4_3:+69785068 | Msa0659390:five_prime_UTR |
| AGTATTGCTATTAATGAAAT+TGG | 0.189677 | 4_3:+69787309 | Msa0659390:CDS |
| TTAAATCCTCAATGGAAATT+TGG | 0.195961 | 4_3:+69787633 | Msa0659390:CDS |
| GGTATTTGATATAGGAAATA+TGG | 0.198745 | 4_3:-69788822 | None:intergenic |
| GATGGAGCAGCTTCGAAAAT+TGG | 0.207135 | 4_3:-69788930 | None:intergenic |
| TCTCCTGGACCTACTTTCTT+TGG | 0.208451 | 4_3:-69787093 | None:intergenic |
| AGCTTGCTTTGTTTCGTATC+TGG | 0.220560 | 4_3:+69785332 | Msa0659390:intron |
| ATGAATGACCAAAACATTTC+TGG | 0.227137 | 4_3:-69788772 | None:intergenic |
| GCTAGCCCATTCGCCTTTCT+TGG | 0.243438 | 4_3:-69788958 | None:intergenic |
| CACTTCTTTCACGGGTTACT+TGG | 0.248796 | 4_3:+69787151 | Msa0659390:CDS |
| GTACTAATGTTGGTGATTAT+TGG | 0.257131 | 4_3:+69789231 | Msa0659390:CDS |
| GGGTGGTATATTTGAATCTC+TGG | 0.260256 | 4_3:+69787593 | Msa0659390:CDS |
| ATCAATATTGTAAATTATTT+GGG | 0.276089 | 4_3:+69787495 | Msa0659390:CDS |
| CCTACTTTCTTTGGATTGTA+TGG | 0.283312 | 4_3:-69787084 | None:intergenic |
| TTTGTTGTTGGGGTGGAATT+AGG | 0.285242 | 4_3:-69788843 | None:intergenic |
| AACTTTGCTACAGCTGAAAT+CGG | 0.303038 | 4_3:+69789038 | Msa0659390:CDS |
| GCCACTTGCAATCTTGCTTT+AGG | 0.309774 | 4_3:+69789146 | Msa0659390:CDS |
| TCCAGGTGGCTTAATACTTT+GGG | 0.320194 | 4_3:+69787573 | Msa0659390:CDS |
| TATCATTCCTCCCAGGGTTT+GGG | 0.325743 | 4_3:+69787807 | Msa0659390:intron |
| TATTCTGATAGAAATTTATA+CGG | 0.328318 | 4_3:+69787342 | Msa0659390:CDS |
| TGGAATTAGGTATTTGATAT+AGG | 0.328975 | 4_3:-69788830 | None:intergenic |
| CGTACGATTGGGCGAATTCT+CGG | 0.337039 | 4_3:-69785170 | None:intergenic |
| CGGTGTTCTCACTTCTTTCA+CGG | 0.338719 | 4_3:+69787142 | Msa0659390:CDS |
| GAACTCAGCCAGAAATGTTT+TGG | 0.344404 | 4_3:+69788764 | Msa0659390:CDS |
| GTCCAGGTGGCTTAATACTT+TGG | 0.355990 | 4_3:+69787572 | Msa0659390:CDS |
| CGCTTGGCTAAGAGAATATC+AGG | 0.358140 | 4_3:+69787236 | Msa0659390:CDS |
| ATCGTTGGGCATTGCTTACT+CGG | 0.364806 | 4_3:+69787122 | Msa0659390:CDS |
| CAGGGTTTGGGTGTTCCCAC+TGG | 0.367001 | 4_3:+69787819 | Msa0659390:intron |
| ATGTCAGCTTCATGGAAAAC+AGG | 0.372718 | 4_3:-69787261 | None:intergenic |
| TTGAAGTCAGCCACAAATCT+TGG | 0.373675 | 4_3:+69788733 | Msa0659390:CDS |
| TATTAACTATGTCAGCTTCA+TGG | 0.374925 | 4_3:-69787269 | None:intergenic |
| TCACTTGGAATCAACATTGC+TGG | 0.382539 | 4_3:+69787009 | Msa0659390:CDS |
| TTTGAGACTATACCCGAATC+AGG | 0.382697 | 4_3:-69786970 | None:intergenic |
| TTTGGTCCCTGATCTTGTAT+TGG | 0.388757 | 4_3:+69789509 | Msa0659390:three_prime_UTR |
| TTCGCCCAATCGTACGGTTA+GGG | 0.397770 | 4_3:+69785177 | Msa0659390:CDS |
| ACTTTGCTACAGCTGAAATC+GGG | 0.398136 | 4_3:+69789039 | Msa0659390:CDS |
| ATTCGCCCAATCGTACGGTT+AGG | 0.400527 | 4_3:+69785176 | Msa0659390:CDS |
| TAGTCATCCAATACAAGATC+AGG | 0.401641 | 4_3:-69789516 | None:intergenic |
| ACGCTCAATAAACAACCTTC+TGG | 0.402878 | 4_3:+69788536 | Msa0659390:CDS |
| ATCTGCCCATTTGACGCCTC+AGG | 0.403801 | 4_3:-69787456 | None:intergenic |
| ATTGTTTCGTTCACACAGAT+TGG | 0.406565 | 4_3:-69785116 | None:intergenic |
| ACAATATCAACCGCTTTCAT+TGG | 0.407962 | 4_3:+69788993 | Msa0659390:CDS |
| ATCTACCCTGAGGCGTCAAA+TGG | 0.408841 | 4_3:+69787450 | Msa0659390:CDS |
| ATGTTGGTGATTATTGGAAC+TGG | 0.413859 | 4_3:+69789237 | Msa0659390:CDS |
| GGTCGAGCCATCAGACAAAT+CGG | 0.416688 | 4_3:-69789077 | None:intergenic |
| CACACAATGAAGTTTGTTGT+TGG | 0.418716 | 4_3:-69788855 | None:intergenic |
| TCTTTCACGGGTTACTTGGC+TGG | 0.419390 | 4_3:+69787155 | Msa0659390:CDS |
| TGTTGAGGGAGCTGCTACAC+TGG | 0.425827 | 4_3:+69787674 | Msa0659390:CDS |
| CTAGCCCATTCGCCTTTCTT+GGG | 0.428462 | 4_3:-69788957 | None:intergenic |
| CCAGGAGAGGCTTTATCGTT+GGG | 0.433632 | 4_3:+69787108 | Msa0659390:CDS |
| ACACAATGAAGTTTGTTGTT+GGG | 0.440704 | 4_3:-69788854 | None:intergenic |
| TCCGAAAATGCCCTTATGCC+TGG | 0.442146 | 4_3:+69785404 | Msa0659390:CDS |
| TATTTGGGAGTGCATAAAAC+AGG | 0.443229 | 4_3:+69787510 | Msa0659390:CDS |
| GTATTTGATATAGGAAATAT+GGG | 0.444101 | 4_3:-69788821 | None:intergenic |
| CATTGTCCCGATTTGTCTGA+TGG | 0.447556 | 4_3:+69789070 | Msa0659390:CDS |
| GGAACTGGGTGGAATCCCTT+TGG | 0.449066 | 4_3:+69789252 | Msa0659390:CDS |
| TAAGTAACTAACCAGGCATA+AGG | 0.451280 | 4_3:-69785415 | None:intergenic |
| CTTGTGGCTGATTCACAATA+TGG | 0.451732 | 4_3:+69787195 | Msa0659390:CDS |
| TCGCCTTTCTTGGGTTGAGA+TGG | 0.457253 | 4_3:-69788948 | None:intergenic |
| AATATTGATGAGGTCGAGGT+TGG | 0.461354 | 4_3:-69787481 | None:intergenic |
| TCAGCCACAAATCTTGGAAA+TGG | 0.464454 | 4_3:+69788739 | Msa0659390:CDS |
| CACAATGAAGTTTGTTGTTG+GGG | 0.464533 | 4_3:-69788853 | None:intergenic |
| CTCGAAGCTTAAATCCTCAA+TGG | 0.465704 | 4_3:+69787625 | Msa0659390:CDS |
| TCAGCCATTTCCAAGATTTG+TGG | 0.465970 | 4_3:-69788743 | None:intergenic |
| TCTGCTACTCAGTATGTTGA+GGG | 0.467592 | 4_3:+69787660 | Msa0659390:CDS |
| GGTGTTCCCACTGGTTCTCA+TGG | 0.474162 | 4_3:+69787828 | Msa0659390:CDS |
| CCCAACGATAAAGCCTCTCC+TGG | 0.477706 | 4_3:-69787108 | None:intergenic |
| CTTCTCCTGCTAAAATGATC+AGG | 0.478884 | 4_3:+69787904 | Msa0659390:CDS |
| GATGAAACTGATTCAGTTGA+GGG | 0.479380 | 4_3:-69786927 | None:intergenic |
| ACAGTTCTTTATAGTTTAGA+CGG | 0.480026 | 4_3:+69789474 | Msa0659390:three_prime_UTR |
| TAAGTATTGTTAGCAAGTAT+AGG | 0.487108 | 4_3:-69785377 | None:intergenic |
| GCTTCCTTGCCATCACCCCT+TGG | 0.488707 | 4_3:-69787045 | None:intergenic |
| AGACGGGGAATGCTATACTT+TGG | 0.491186 | 4_3:+69789491 | Msa0659390:three_prime_UTR |
| AACATAAGCTGTTCATCACT+TGG | 0.491790 | 4_3:+69786994 | Msa0659390:CDS |
| ATATAGGAAATATGGGAGTA+AGG | 0.495013 | 4_3:-69788814 | None:intergenic |
| GAAATACCAAATTTCCATTG+AGG | 0.497246 | 4_3:-69787639 | None:intergenic |
| TCCAGGAGAGGCTTTATCGT+TGG | 0.500412 | 4_3:+69787107 | Msa0659390:CDS |
| CAGTTCTTTATAGTTTAGAC+GGG | 0.501962 | 4_3:+69789475 | Msa0659390:three_prime_UTR |
| AACAATATGCTTTAAAGAGA+AGG | 0.502571 | 4_3:-69789440 | None:intergenic |
| TTCTGCTACTCAGTATGTTG+AGG | 0.505290 | 4_3:+69787659 | Msa0659390:CDS |
| ACGGGTTACTTGGCTGGCAA+AGG | 0.506068 | 4_3:+69787161 | Msa0659390:CDS |
| GGCTGGCAAAGGATGTCATA+TGG | 0.506751 | 4_3:+69787172 | Msa0659390:CDS |
| GGTGGTATATTTGAATCTCT+GGG | 0.507254 | 4_3:+69787594 | Msa0659390:CDS |
| TCTCTCACAGTAACTATGTC+AGG | 0.508091 | 4_3:+69785210 | Msa0659390:CDS |
| ACTTGTTGCAGGTTGATTGA+AGG | 0.509976 | 4_3:+69788507 | Msa0659390:intron |
| CGAGAATTCGCCCAATCGTA+CGG | 0.512761 | 4_3:+69785171 | Msa0659390:CDS |
| AACAACAAACTTCATTGTGT+GGG | 0.513034 | 4_3:+69788857 | Msa0659390:CDS |
| TTCTAGTAAGTATGTGTCTG+TGG | 0.513985 | 4_3:+69788599 | Msa0659390:CDS |
| GGTGTTCTCACTTCTTTCAC+GGG | 0.514038 | 4_3:+69787143 | Msa0659390:CDS |
| TGCACAGTATATGTCAGCCT+TGG | 0.514294 | 4_3:+69786876 | Msa0659390:CDS |
| GGTGCAACCAGTAATGCAAA+TGG | 0.515177 | 4_3:-69788636 | None:intergenic |
| GCTCCATCTCAACCCAAGAA+AGG | 0.515909 | 4_3:+69788945 | Msa0659390:CDS |
| AAGTAACTAACCAGGCATAA+GGG | 0.518932 | 4_3:-69785414 | None:intergenic |
| ATTGCAAGTGGCCCTCAGTA+AGG | 0.523275 | 4_3:-69789135 | None:intergenic |
| AATATTCTGCTGTGTCCGCT+TGG | 0.526824 | 4_3:+69787220 | Msa0659390:CDS |
| AAAACCCTAACCGTACGATT+GGG | 0.528834 | 4_3:-69785181 | None:intergenic |
| TTACAATATTGATGAGGTCG+AGG | 0.533665 | 4_3:-69787485 | None:intergenic |
| CAACGTGAAGGGTGAAATTG+AGG | 0.534294 | 4_3:+69785046 | Msa0659390:five_prime_UTR |
| TATTAAGACTGTCTTCATGA+TGG | 0.534636 | 4_3:-69787428 | None:intergenic |
| TGGAGAGATGCCGCAACTAT+CGG | 0.535045 | 4_3:-69788663 | None:intergenic |
| GGTGGAAAACGACAGCGTAC+CGG | 0.537232 | 4_3:+69785139 | Msa0659390:CDS |
| GTATTGTTCACCTACCATGC+TGG | 0.539558 | 4_3:+69789306 | Msa0659390:CDS |
| TGGAATTATTAGAGCACCAA+GGG | 0.540171 | 4_3:+69787029 | Msa0659390:CDS |
| ATATTGATGAGGTCGAGGTT+GGG | 0.541092 | 4_3:-69787480 | None:intergenic |
| ATTAGAGCACCAAGGGGTGA+TGG | 0.544542 | 4_3:+69787036 | Msa0659390:CDS |
| AGGTGGCTTAATACTTTGGG+TGG | 0.546500 | 4_3:+69787576 | Msa0659390:CDS |
| TGAAGCTTGATGCTCGAGCT+AGG | 0.547316 | 4_3:+69789102 | Msa0659390:CDS |
| TCAACCCAAGAAAGGCGAAT+GGG | 0.547792 | 4_3:+69788953 | Msa0659390:CDS |
| AGCACCAAGGGGTGATGGCA+AGG | 0.549825 | 4_3:+69787041 | Msa0659390:CDS |
| ATAAGTAACCTCAGCATCCA+AGG | 0.552192 | 4_3:-69786893 | None:intergenic |
| GGGTGGAATCCCTTTGGACA+TGG | 0.552715 | 4_3:+69789258 | Msa0659390:CDS |
| GGCAAGTTCAATGTATTCCC+AGG | 0.557053 | 4_3:+69787695 | Msa0659390:CDS |
| AGCACTGTTCCATGTCCAAA+GGG | 0.557411 | 4_3:-69789267 | None:intergenic |
| CAACAACAAACTTCATTGTG+TGG | 0.557574 | 4_3:+69788856 | Msa0659390:CDS |
| TCTACCCTGAGGCGTCAAAT+GGG | 0.558662 | 4_3:+69787451 | Msa0659390:CDS |
| TGGATTTGCTTGCATCAGCA+TGG | 0.562315 | 4_3:-69788683 | None:intergenic |
| TTCAACTTCAGAGGAAGATG+TGG | 0.564793 | 4_3:-69788715 | None:intergenic |
| GACTATACCCGAATCAGGAC+TGG | 0.565528 | 4_3:-69786965 | None:intergenic |
| TCAAGTTGATGCAATCACTC+TGG | 0.567606 | 4_3:+69787866 | Msa0659390:CDS |
| GTGGCTGACTTCAACTTCAG+AGG | 0.568642 | 4_3:-69788724 | None:intergenic |
| GTCGAGCCATCAGACAAATC+GGG | 0.569667 | 4_3:-69789076 | None:intergenic |
| ACCCAAAGTATTAAGCCACC+TGG | 0.573206 | 4_3:-69787574 | None:intergenic |
| AATCCAAAGAAAGTAGGTCC+AGG | 0.573224 | 4_3:+69787090 | Msa0659390:CDS |
| CCATACAATCCAAAGAAAGT+AGG | 0.575872 | 4_3:+69787084 | Msa0659390:CDS |
| TGCACCACTTCCGATAGTTG+CGG | 0.576728 | 4_3:+69788653 | Msa0659390:CDS |
| AGTGCTACTTACCTCTATGT+AGG | 0.578669 | 4_3:+69789284 | Msa0659390:CDS |
| ACCTAAAGCAAGATTGCAAG+TGG | 0.579105 | 4_3:-69789147 | None:intergenic |
| GAGTGCATAAAACAGGTTTG+CGG | 0.582326 | 4_3:+69787517 | Msa0659390:CDS |
| ATTCTGTCACGATTCAACCT+TGG | 0.582688 | 4_3:+69784975 | Msa0659390:five_prime_UTR |
| GGATGAAACTGATTCAGTTG+AGG | 0.584389 | 4_3:-69786928 | None:intergenic |
| TCTAGTAAGTATGTGTCTGT+GGG | 0.585208 | 4_3:+69788600 | Msa0659390:CDS |
| TATTGTTCACCTACCATGCT+GGG | 0.586204 | 4_3:+69789307 | Msa0659390:CDS |
| GATGCCGCAACTATCGGAAG+TGG | 0.586445 | 4_3:-69788657 | None:intergenic |
| GTAATAAAAGTTGACGAGCA+AGG | 0.588032 | 4_3:+69787402 | Msa0659390:CDS |
| CTTTGCTACAGCTGAAATCG+GGG | 0.589133 | 4_3:+69789040 | Msa0659390:CDS |
| CTCAACCCAAGAAAGGCGAA+TGG | 0.591322 | 4_3:+69788952 | Msa0659390:CDS |
| AATGAATTCATTCTCAGTGG+TGG | 0.592664 | 4_3:+69787930 | Msa0659390:CDS |
| TGGCAAGGAAGCTATTGTCT+TGG | 0.595093 | 4_3:+69787056 | Msa0659390:CDS |
| ACAACAAACTTCATTGTGTG+GGG | 0.599573 | 4_3:+69788858 | Msa0659390:CDS |
| TCTGATAGAAATTTATACGG+TGG | 0.601188 | 4_3:+69787345 | Msa0659390:CDS |
| TAGCACTGTTCCATGTCCAA+AGG | 0.602776 | 4_3:-69789268 | None:intergenic |
| AATGAAGTTTGTTGTTGGGG+TGG | 0.602908 | 4_3:-69788850 | None:intergenic |
| GACATATGATGATCGATCCA+AGG | 0.605266 | 4_3:-69784992 | None:intergenic |
| TCTGCCCATTTGACGCCTCA+GGG | 0.609315 | 4_3:-69787455 | None:intergenic |
| AATTCATTCTCAGTGGTGGA+AGG | 0.611705 | 4_3:+69787934 | Msa0659390:CDS |
| AAGTTTGCAGTGCAACGTGA+AGG | 0.613923 | 4_3:+69785034 | Msa0659390:five_prime_UTR |
| GCTCGAGCATCAAGCTTCAA+CGG | 0.614048 | 4_3:-69789098 | None:intergenic |
| TGTCAGCTTCATGGAAAACA+GGG | 0.614454 | 4_3:-69787260 | None:intergenic |
| TTTCTCTACTTGGGTCCAGG+TGG | 0.615749 | 4_3:+69787559 | Msa0659390:CDS |
| GAGAGATAAACCAATGAAAG+CGG | 0.621088 | 4_3:-69789003 | None:intergenic |
| ACTGATGGAACTTCTCCAGA+AGG | 0.622506 | 4_3:-69788551 | None:intergenic |
| AATAATTTACAATATTGATG+AGG | 0.622757 | 4_3:-69787491 | None:intergenic |
| TGTTGGTGATTATTGGAACT+GGG | 0.626280 | 4_3:+69789238 | Msa0659390:CDS |
| AAAGGATGTCATATGGCTTG+TGG | 0.628507 | 4_3:+69787179 | Msa0659390:CDS |
| CTGGAATTATTAGAGCACCA+AGG | 0.633520 | 4_3:+69787028 | Msa0659390:CDS |
| AGTCATCCAATACAAGATCA+GGG | 0.635155 | 4_3:-69789515 | None:intergenic |
| GGTGAACAATACCTACATAG+AGG | 0.637166 | 4_3:-69789295 | None:intergenic |
| ACTTACTAGAAGATGTCAAG+AGG | 0.638987 | 4_3:-69788587 | None:intergenic |
| TTGCATCAACTTGATAATCA+CGG | 0.639994 | 4_3:-69787857 | None:intergenic |
| TATGTCAGCCTTGGATGCTG+AGG | 0.642869 | 4_3:+69786885 | Msa0659390:CDS |
| GGAGCTTGAGAGCCTTACTG+AGG | 0.645428 | 4_3:+69789123 | Msa0659390:CDS |
| TGCAAAGTGCCCAGCATGGT+AGG | 0.649906 | 4_3:-69789316 | None:intergenic |
| GAAGGCACCATGAGAACCAG+TGG | 0.651699 | 4_3:-69787835 | None:intergenic |
| ACTAAAATTACATGTCAACA+AGG | 0.655980 | 4_3:-69789356 | None:intergenic |
| AAAGAAAGTAGGTCCAGGAG+AGG | 0.656800 | 4_3:+69787095 | Msa0659390:CDS |
| CTGTGTGAACGAAACAATGG+TGG | 0.656880 | 4_3:+69785121 | Msa0659390:exon |
| AGTTTGCAGTGCAACGTGAA+GGG | 0.659038 | 4_3:+69785035 | Msa0659390:five_prime_UTR |
| CTGATATTCTCTTAGCCAAG+CGG | 0.664447 | 4_3:-69787235 | None:intergenic |
| GAGCTTGAGAGCCTTACTGA+GGG | 0.667701 | 4_3:+69789124 | Msa0659390:CDS |
| GGAAGATGTGGATTGCAGAG+TGG | 0.668514 | 4_3:-69788703 | None:intergenic |
| TGAATGCAAAGTGCCCAGCA+TGG | 0.671414 | 4_3:-69789320 | None:intergenic |
| CGTAATGAATTCATTCTCAG+TGG | 0.671667 | 4_3:+69787927 | Msa0659390:CDS |
| ATCAACTTGATAATCACGGA+AGG | 0.674498 | 4_3:-69787853 | None:intergenic |
| TGGTGATTATTGGAACTGGG+TGG | 0.696113 | 4_3:+69789241 | Msa0659390:CDS |
| GTCAGCTTCATGGAAAACAG+GGG | 0.707052 | 4_3:-69787259 | None:intergenic |
| AAGGCACCATGAGAACCAGT+GGG | 0.709237 | 4_3:-69787834 | None:intergenic |
| AATCTGTGTGAACGAAACAA+TGG | 0.718352 | 4_3:+69785118 | Msa0659390:exon |
| AGTTCTTTATAGTTTAGACG+GGG | 0.740788 | 4_3:+69789476 | Msa0659390:three_prime_UTR |
| CAGTCTTAATATCTACCCTG+AGG | 0.742097 | 4_3:+69787440 | Msa0659390:CDS |
| GGAATTATTAGAGCACCAAG+GGG | 0.759596 | 4_3:+69787030 | Msa0659390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAATATTGTAAATTATTT+GGG | + | chr4_3:69787495-69787514 | Msa0659390:CDS | 10.0% |
| !! | ATAAAGAATGTTTATTAAAA+TGG | - | chr4_3:69787782-69787801 | None:intergenic | 10.0% |
| !! | AACATAAAATGAAAAGTTTA+AGG | - | chr4_3:69786177-69786196 | None:intergenic | 15.0% |
| !! | AAATCACAAAAAGATTAAAA+AGG | - | chr4_3:69786602-69786621 | None:intergenic | 15.0% |
| !! | TATTCTGATAGAAATTTATA+CGG | + | chr4_3:69787342-69787361 | Msa0659390:CDS | 15.0% |
| !! | AATAATTTACAATATTGATG+AGG | - | chr4_3:69787494-69787513 | None:intergenic | 15.0% |
| !! | CATCAATATTGTAAATTATT+TGG | + | chr4_3:69787494-69787513 | Msa0659390:CDS | 15.0% |
| !!! | ATAATTTTGTACTTCATTTT+GGG | + | chr4_3:69788903-69788922 | Msa0659390:CDS | 15.0% |
| !!! | AACGAAAAGATAATGATTTT+GGG | + | chr4_3:69785069-69785088 | Msa0659390:five_prime_UTR | 20.0% |
| !! | AGGTTAATAAGCAATAAATT+AGG | - | chr4_3:69785459-69785478 | None:intergenic | 20.0% |
| !!! | TTTTTCCCTAAGTTTTTTTT+TGG | + | chr4_3:69785520-69785539 | Msa0659390:intron | 20.0% |
| !! | AATTCAATATGTAGTTACAA+AGG | - | chr4_3:69786074-69786093 | None:intergenic | 20.0% |
| !!! | AGTATTGCTATTAATGAAAT+TGG | + | chr4_3:69787309-69787328 | Msa0659390:CDS | 20.0% |
| !!! | TGTTTATTAAAATGGTAATG+AGG | - | chr4_3:69787774-69787793 | None:intergenic | 20.0% |
| !!! | ATTTTTAACTCCTAAATATG+TGG | + | chr4_3:69788042-69788061 | Msa0659390:intron | 20.0% |
| !!! | TATTATTTCTTTTTCCAAGA+GGG | + | chr4_3:69788339-69788358 | Msa0659390:intron | 20.0% |
| !! | GTATTTGATATAGGAAATAT+GGG | - | chr4_3:69788824-69788843 | None:intergenic | 20.0% |
| !!! | CATAATTTTGTACTTCATTT+TGG | + | chr4_3:69788902-69788921 | Msa0659390:CDS | 20.0% |
| !! | GAACGAAAAGATAATGATTT+TGG | + | chr4_3:69785068-69785087 | Msa0659390:five_prime_UTR | 25.0% |
| ! | TCTGAATCTGAATTTGAATT+TGG | + | chr4_3:69785264-69785283 | Msa0659390:intron | 25.0% |
| !! | TAAGTATTGTTAGCAAGTAT+AGG | - | chr4_3:69785380-69785399 | None:intergenic | 25.0% |
| ! | AAATGAGAAAGAGATGAAAA+TGG | - | chr4_3:69785751-69785770 | None:intergenic | 25.0% |
| ! | TTAACAATATTATGATGCAG+TGG | + | chr4_3:69786093-69786112 | Msa0659390:intron | 25.0% |
| !! | CTTTTGTTCATGTTCTTATA+TGG | + | chr4_3:69786245-69786264 | Msa0659390:intron | 25.0% |
| ! | TTTATAAAGTCAGAGATTAG+AGG | + | chr4_3:69786473-69786492 | Msa0659390:intron | 25.0% |
| ! | TCTTTCATAACTGTTTATTG+AGG | + | chr4_3:69786540-69786559 | Msa0659390:intron | 25.0% |
| ! | ACAAAAAGATTAAAAAGGTG+CGG | - | chr4_3:69786597-69786616 | None:intergenic | 25.0% |
| ! | AAGACAAAATTAAGAAGCTT+TGG | - | chr4_3:69786754-69786773 | None:intergenic | 25.0% |
| ! | TTAAATCCTCAATGGAAATT+TGG | + | chr4_3:69787633-69787652 | Msa0659390:CDS | 25.0% |
| ! | GTAAATGGAAAACATAAACA+GGG | - | chr4_3:69788075-69788094 | None:intergenic | 25.0% |
| ! | AGTAAATGGAAAACATAAAC+AGG | - | chr4_3:69788076-69788095 | None:intergenic | 25.0% |
| ! | TGTAGTTACATGATAGTAAA+TGG | - | chr4_3:69788090-69788109 | None:intergenic | 25.0% |
| ! | GTGTATGTTTACTTAAGAAA+AGG | + | chr4_3:69788127-69788146 | Msa0659390:intron | 25.0% |
| !! | AAGCTAAAGAAACTTTAGAA+GGG | + | chr4_3:69788228-69788247 | Msa0659390:intron | 25.0% |
| ! | ATGACAAATGACAGTTTATT+GGG | + | chr4_3:69788300-69788319 | Msa0659390:intron | 25.0% |
| !!! | GTATTATTTCTTTTTCCAAG+AGG | + | chr4_3:69788338-69788357 | Msa0659390:intron | 25.0% |
| !!! | ATGTTTTGGTCATTCATTTA+TGG | + | chr4_3:69788778-69788797 | Msa0659390:CDS | 25.0% |
| !!! | TGTTTTGGTCATTCATTTAT+GGG | + | chr4_3:69788779-69788798 | Msa0659390:CDS | 25.0% |
| ! | GGTATTTGATATAGGAAATA+TGG | - | chr4_3:69788825-69788844 | None:intergenic | 25.0% |
| ! | TGGAATTAGGTATTTGATAT+AGG | - | chr4_3:69788833-69788852 | None:intergenic | 25.0% |
| ! | ACTAAAATTACATGTCAACA+AGG | - | chr4_3:69789359-69789378 | None:intergenic | 25.0% |
| !!! | GACATGTAATTTTAGTTAGT+TGG | + | chr4_3:69789363-69789382 | Msa0659390:exon | 25.0% |
| !!! | AACAATATGCTTTAAAGAGA+AGG | - | chr4_3:69789443-69789462 | None:intergenic | 25.0% |
| ! | ACAGTTCTTTATAGTTTAGA+CGG | + | chr4_3:69789474-69789493 | Msa0659390:three_prime_UTR | 25.0% |
| ATGAGTAAGAATAACTGTGT+TGG | + | chr4_3:69785298-69785317 | Msa0659390:intron | 30.0% | |
| ! | AGTTTGACTTCACTTATTTG+AGG | - | chr4_3:69785479-69785498 | None:intergenic | 30.0% |
| GCTCTCCAAAAAAAAACTTA+GGG | - | chr4_3:69785528-69785547 | None:intergenic | 30.0% | |
| TGCTCTCCAAAAAAAAACTT+AGG | - | chr4_3:69785529-69785548 | None:intergenic | 30.0% | |
| !! | ATTCAATAATCTGTTTCTGC+AGG | + | chr4_3:69785641-69785660 | Msa0659390:intron | 30.0% |
| CAAATCATTGACGAATTTGT+TGG | - | chr4_3:69785708-69785727 | None:intergenic | 30.0% | |
| ! | ATGTAGCTGCTCAATTTTAA+AGG | - | chr4_3:69785859-69785878 | None:intergenic | 30.0% |
| !! | AATTTGCTATTAGTGCAAAC+CGG | + | chr4_3:69785968-69785987 | Msa0659390:intron | 30.0% |
| TCAATATGTAGTTACAAAGG+TGG | - | chr4_3:69786071-69786090 | None:intergenic | 30.0% | |
| GCAAAATAGTAGACTTTCAT+TGG | + | chr4_3:69786115-69786134 | Msa0659390:intron | 30.0% | |
| ACTTTCATTGGATGTTAGTT+TGG | + | chr4_3:69786127-69786146 | Msa0659390:intron | 30.0% | |
| ATTGAGGATATTATCCAAAC+CGG | + | chr4_3:69786556-69786575 | Msa0659390:intron | 30.0% | |
| !! | GTGATTTTGATCATACTAGT+TGG | + | chr4_3:69786615-69786634 | Msa0659390:intron | 30.0% |
| TATTAACTATGTCAGCTTCA+TGG | - | chr4_3:69787272-69787291 | None:intergenic | 30.0% | |
| TCTGATAGAAATTTATACGG+TGG | + | chr4_3:69787345-69787364 | Msa0659390:CDS | 30.0% | |
| TATTAAGACTGTCTTCATGA+TGG | - | chr4_3:69787431-69787450 | None:intergenic | 30.0% | |
| ! | AAGAAGATGTTTTCTCTACT+TGG | + | chr4_3:69787549-69787568 | Msa0659390:CDS | 30.0% |
| ! | AGAAGATGTTTTCTCTACTT+GGG | + | chr4_3:69787550-69787569 | Msa0659390:CDS | 30.0% |
| GAAATACCAAATTTCCATTG+AGG | - | chr4_3:69787642-69787661 | None:intergenic | 30.0% | |
| AGAGTAAAAGTTAACTACCT+GGG | - | chr4_3:69787715-69787734 | None:intergenic | 30.0% | |
| TAGAGTAAAAGTTAACTACC+TGG | - | chr4_3:69787716-69787735 | None:intergenic | 30.0% | |
| ! | TTGCATCAACTTGATAATCA+CGG | - | chr4_3:69787860-69787879 | None:intergenic | 30.0% |
| GATGTTACAAATAACACACT+TGG | - | chr4_3:69787974-69787993 | None:intergenic | 30.0% | |
| !! | GTGTGTTATTTGTAACATCT+TGG | + | chr4_3:69787975-69787994 | Msa0659390:intron | 30.0% |
| AACATCTTGGAATAAATGTC+TGG | + | chr4_3:69787988-69788007 | Msa0659390:intron | 30.0% | |
| AATAAATGTCTGGTCATCAA+TGG | + | chr4_3:69787998-69788017 | Msa0659390:intron | 30.0% | |
| TTAAGAAAAGGAGAACAGTA+TGG | + | chr4_3:69788139-69788158 | Msa0659390:intron | 30.0% | |
| GAAGCTAAAGAAACTTTAGA+AGG | + | chr4_3:69788227-69788246 | Msa0659390:intron | 30.0% | |
| ! | ACTGTCATTTGTCATGTTAA+AGG | - | chr4_3:69788295-69788314 | None:intergenic | 30.0% |
| CATGACAAATGACAGTTTAT+TGG | + | chr4_3:69788299-69788318 | Msa0659390:intron | 30.0% | |
| GGTATAAAAAGAATGACTGA+TGG | - | chr4_3:69788569-69788588 | None:intergenic | 30.0% | |
| ATGAATGACCAAAACATTTC+TGG | - | chr4_3:69788775-69788794 | None:intergenic | 30.0% | |
| !! | GTTTTGGTCATTCATTTATG+GGG | + | chr4_3:69788780-69788799 | Msa0659390:CDS | 30.0% |
| ATATAGGAAATATGGGAGTA+AGG | - | chr4_3:69788817-69788836 | None:intergenic | 30.0% | |
| !! | ACACAATGAAGTTTGTTGTT+GGG | - | chr4_3:69788857-69788876 | None:intergenic | 30.0% |
| AACAACAAACTTCATTGTGT+GGG | + | chr4_3:69788857-69788876 | Msa0659390:CDS | 30.0% | |
| TTCACGAAAAAATATGCTAC+CGG | - | chr4_3:69789188-69789207 | None:intergenic | 30.0% | |
| !!! | GTAGCATATTTTTTCGTGAA+GGG | + | chr4_3:69789188-69789207 | Msa0659390:CDS | 30.0% |
| !! | GATTTTGATGGTACTAATGT+TGG | + | chr4_3:69789221-69789240 | Msa0659390:CDS | 30.0% |
| !! | GTACTAATGTTGGTGATTAT+TGG | + | chr4_3:69789231-69789250 | Msa0659390:CDS | 30.0% |
| CAGTTCTTTATAGTTTAGAC+GGG | + | chr4_3:69789475-69789494 | Msa0659390:three_prime_UTR | 30.0% | |
| AGTTCTTTATAGTTTAGACG+GGG | + | chr4_3:69789476-69789495 | Msa0659390:three_prime_UTR | 30.0% | |
| ! | CGATCATCATATGTCTTTTG+AGG | + | chr4_3:69785000-69785019 | Msa0659390:five_prime_UTR | 35.0% |
| !! | ATATGTCTTTTGAGGAACGA+AGG | + | chr4_3:69785008-69785027 | Msa0659390:five_prime_UTR | 35.0% |
| ATTGTTTCGTTCACACAGAT+TGG | - | chr4_3:69785119-69785138 | None:intergenic | 35.0% | |
| AATCTGTGTGAACGAAACAA+TGG | + | chr4_3:69785118-69785137 | Msa0659390:exon | 35.0% | |
| ! | GTAAGAATAACTGTGTTGGT+TGG | + | chr4_3:69785302-69785321 | Msa0659390:intron | 35.0% |
| AAGTAACTAACCAGGCATAA+GGG | - | chr4_3:69785417-69785436 | None:intergenic | 35.0% | |
| TAAGTAACTAACCAGGCATA+AGG | - | chr4_3:69785418-69785437 | None:intergenic | 35.0% | |
| !! | TTTTGGAGAGCAGTAGTTTA+TGG | + | chr4_3:69785537-69785556 | Msa0659390:intron | 35.0% |
| AGTTTCACAATTGCTTATGC+TGG | + | chr4_3:69785600-69785619 | Msa0659390:intron | 35.0% | |
| !! | ATTGACGAATTTGTTGGCAT+GGG | - | chr4_3:69785702-69785721 | None:intergenic | 35.0% |
| !! | ATTTGCTATTAGTGCAAACC+GGG | + | chr4_3:69785969-69785988 | Msa0659390:intron | 35.0% |
| TCATCATGTAAGTGTAAACC+CGG | - | chr4_3:69785990-69786009 | None:intergenic | 35.0% | |
| ATCAGTGTAAATCAGCTCAA+AGG | - | chr4_3:69786154-69786173 | None:intergenic | 35.0% | |
| TGTTATGCAGACTGTCTAAT+TGG | + | chr4_3:69786221-69786240 | Msa0659390:intron | 35.0% | |
| CACAAACATCTAAGTTCACA+GGG | - | chr4_3:69786350-69786369 | None:intergenic | 35.0% | |
| TTTGAAAATCCCGTCCAAAT+GGG | + | chr4_3:69786700-69786719 | Msa0659390:intron | 35.0% | |
| ! | TTCCTAATTTTCTCTCTGCT+TGG | + | chr4_3:69786785-69786804 | Msa0659390:intron | 35.0% |
| TTCCAAGCAGAGAGAAAATT+AGG | - | chr4_3:69786790-69786809 | None:intergenic | 35.0% | |
| ! | GATGAAACTGATTCAGTTGA+GGG | - | chr4_3:69786930-69786949 | None:intergenic | 35.0% |
| AACATAAGCTGTTCATCACT+TGG | + | chr4_3:69786994-69787013 | Msa0659390:CDS | 35.0% | |
| ! | TGGAATTATTAGAGCACCAA+GGG | + | chr4_3:69787029-69787048 | Msa0659390:CDS | 35.0% |
| CCTACTTTCTTTGGATTGTA+TGG | - | chr4_3:69787087-69787106 | None:intergenic | 35.0% | |
| CCATACAATCCAAAGAAAGT+AGG | + | chr4_3:69787084-69787103 | Msa0659390:CDS | 35.0% | |
| GTAATAAAAGTTGACGAGCA+AGG | + | chr4_3:69787402-69787421 | Msa0659390:CDS | 35.0% | |
| TTACAATATTGATGAGGTCG+AGG | - | chr4_3:69787488-69787507 | None:intergenic | 35.0% | |
| ! | TATTTGGGAGTGCATAAAAC+AGG | + | chr4_3:69787510-69787529 | Msa0659390:CDS | 35.0% |
| GGTGGTATATTTGAATCTCT+GGG | + | chr4_3:69787594-69787613 | Msa0659390:CDS | 35.0% | |
| ATTTGTATATCATTCCTCCC+AGG | + | chr4_3:69787800-69787819 | Msa0659390:intron | 35.0% | |
| TTTGTATATCATTCCTCCCA+GGG | + | chr4_3:69787801-69787820 | Msa0659390:intron | 35.0% | |
| ! | ATCAACTTGATAATCACGGA+AGG | - | chr4_3:69787856-69787875 | None:intergenic | 35.0% |
| !! | ATTTTAGCAGGAGAAGCTTT+TGG | - | chr4_3:69787900-69787919 | None:intergenic | 35.0% |
| CGTAATGAATTCATTCTCAG+TGG | + | chr4_3:69787927-69787946 | Msa0659390:CDS | 35.0% | |
| AATGAATTCATTCTCAGTGG+TGG | + | chr4_3:69787930-69787949 | Msa0659390:CDS | 35.0% | |
| CAGTATGGCCAATTATTTGA+AGG | + | chr4_3:69788154-69788173 | Msa0659390:intron | 35.0% | |
| GAACTGAGCCTTCAAATAAT+TGG | - | chr4_3:69788165-69788184 | None:intergenic | 35.0% | |
| ! | AGTTTCTTTAGCTTCTCTAG+TGG | - | chr4_3:69788222-69788241 | None:intergenic | 35.0% |
| ! | TATTTCTTTTTCCAAGAGGG+AGG | + | chr4_3:69788342-69788361 | Msa0659390:intron | 35.0% |
| ACTTACTAGAAGATGTCAAG+AGG | - | chr4_3:69788590-69788609 | None:intergenic | 35.0% | |
| TTCTAGTAAGTATGTGTCTG+TGG | + | chr4_3:69788599-69788618 | Msa0659390:CDS | 35.0% | |
| TCTAGTAAGTATGTGTCTGT+GGG | + | chr4_3:69788600-69788619 | Msa0659390:CDS | 35.0% | |
| CATGATTCCATTTGCATTAC+TGG | + | chr4_3:69788629-69788648 | Msa0659390:CDS | 35.0% | |
| !! | CACAATGAAGTTTGTTGTTG+GGG | - | chr4_3:69788856-69788875 | None:intergenic | 35.0% |
| !! | CACACAATGAAGTTTGTTGT+TGG | - | chr4_3:69788858-69788877 | None:intergenic | 35.0% |
| CAACAACAAACTTCATTGTG+TGG | + | chr4_3:69788856-69788875 | Msa0659390:CDS | 35.0% | |
| ACAACAAACTTCATTGTGTG+GGG | + | chr4_3:69788858-69788877 | Msa0659390:CDS | 35.0% | |
| ACAATATCAACCGCTTTCAT+TGG | + | chr4_3:69788993-69789012 | Msa0659390:CDS | 35.0% | |
| GAGAGATAAACCAATGAAAG+CGG | - | chr4_3:69789006-69789025 | None:intergenic | 35.0% | |
| AACTTTGCTACAGCTGAAAT+CGG | + | chr4_3:69789038-69789057 | Msa0659390:CDS | 35.0% | |
| !!! | AGGTTTTATTGTGTTTCCTC+CGG | + | chr4_3:69789166-69789185 | Msa0659390:CDS | 35.0% |
| !!! | GGTAGCATATTTTTTCGTGA+AGG | + | chr4_3:69789187-69789206 | Msa0659390:CDS | 35.0% |
| ! | GGTGCATTTGAAGATTTTGA+TGG | + | chr4_3:69789209-69789228 | Msa0659390:CDS | 35.0% |
| !! | ATGTTGGTGATTATTGGAAC+TGG | + | chr4_3:69789237-69789256 | Msa0659390:CDS | 35.0% |
| !! | TGTTGGTGATTATTGGAACT+GGG | + | chr4_3:69789238-69789257 | Msa0659390:CDS | 35.0% |
| AGTCATCCAATACAAGATCA+GGG | - | chr4_3:69789518-69789537 | None:intergenic | 35.0% | |
| TAGTCATCCAATACAAGATC+AGG | - | chr4_3:69789519-69789538 | None:intergenic | 35.0% | |
| ATTCTGTCACGATTCAACCT+TGG | + | chr4_3:69784975-69784994 | Msa0659390:five_prime_UTR | 40.0% | |
| GACATATGATGATCGATCCA+AGG | - | chr4_3:69784995-69785014 | None:intergenic | 40.0% | |
| ! | CGAATTCTCGGTTTCTTTTC+CGG | - | chr4_3:69785161-69785180 | None:intergenic | 40.0% |
| AAAACCCTAACCGTACGATT+GGG | - | chr4_3:69785184-69785203 | None:intergenic | 40.0% | |
| AAAAACCCTAACCGTACGAT+TGG | - | chr4_3:69785185-69785204 | None:intergenic | 40.0% | |
| TCTCTCACAGTAACTATGTC+AGG | + | chr4_3:69785210-69785229 | Msa0659390:CDS | 40.0% | |
| !! | AGCTTGCTTTGTTTCGTATC+TGG | + | chr4_3:69785332-69785351 | Msa0659390:intron | 40.0% |
| AGAGAGGTAAGTAACTAACC+AGG | - | chr4_3:69785425-69785444 | None:intergenic | 40.0% | |
| !! | TTAGGTGTTGAGAAAGAGAG+AGG | - | chr4_3:69785441-69785460 | None:intergenic | 40.0% |
| !! | CATTGACGAATTTGTTGGCA+TGG | - | chr4_3:69785703-69785722 | None:intergenic | 40.0% |
| CATTAATGCGACTTCGATTG+AGG | + | chr4_3:69785876-69785895 | Msa0659390:intron | 40.0% | |
| CCACAAACATCTAAGTTCAC+AGG | - | chr4_3:69786351-69786370 | None:intergenic | 40.0% | |
| CCTGTGAACTTAGATGTTTG+TGG | + | chr4_3:69786348-69786367 | Msa0659390:intron | 40.0% | |
| TATAGACTATAGAGCCGGTT+TGG | - | chr4_3:69786573-69786592 | None:intergenic | 40.0% | |
| ! | CATTTGGACGGGATTTTCAA+AGG | - | chr4_3:69786701-69786720 | None:intergenic | 40.0% |
| ! | CTTTGAAAATCCCGTCCAAA+TGG | + | chr4_3:69786699-69786718 | Msa0659390:intron | 40.0% |
| ATAAGTAACCTCAGCATCCA+AGG | - | chr4_3:69786896-69786915 | None:intergenic | 40.0% | |
| ! | GGATGAAACTGATTCAGTTG+AGG | - | chr4_3:69786931-69786950 | None:intergenic | 40.0% |
| !! | CTTTTTCACCAGTCCTGATT+CGG | + | chr4_3:69786957-69786976 | Msa0659390:CDS | 40.0% |
| ! | TTTTTCACCAGTCCTGATTC+GGG | + | chr4_3:69786958-69786977 | Msa0659390:CDS | 40.0% |
| ! | TTTGAGACTATACCCGAATC+AGG | - | chr4_3:69786973-69786992 | None:intergenic | 40.0% |
| TCACTTGGAATCAACATTGC+TGG | + | chr4_3:69787009-69787028 | Msa0659390:CDS | 40.0% | |
| ! | CTGGAATTATTAGAGCACCA+AGG | + | chr4_3:69787028-69787047 | Msa0659390:CDS | 40.0% |
| ! | GGAATTATTAGAGCACCAAG+GGG | + | chr4_3:69787030-69787049 | Msa0659390:CDS | 40.0% |
| AATCCAAAGAAAGTAGGTCC+AGG | + | chr4_3:69787090-69787109 | Msa0659390:CDS | 40.0% | |
| AAAGGATGTCATATGGCTTG+TGG | + | chr4_3:69787179-69787198 | Msa0659390:CDS | 40.0% | |
| ! | CTTGTGGCTGATTCACAATA+TGG | + | chr4_3:69787195-69787214 | Msa0659390:CDS | 40.0% |
| CTGATATTCTCTTAGCCAAG+CGG | - | chr4_3:69787238-69787257 | None:intergenic | 40.0% | |
| TGTCAGCTTCATGGAAAACA+GGG | - | chr4_3:69787263-69787282 | None:intergenic | 40.0% | |
| ATGTCAGCTTCATGGAAAAC+AGG | - | chr4_3:69787264-69787283 | None:intergenic | 40.0% | |
| ! | TTTTAGACGTGCTGGAACTA+TGG | + | chr4_3:69787368-69787387 | Msa0659390:CDS | 40.0% |
| CAGTCTTAATATCTACCCTG+AGG | + | chr4_3:69787440-69787459 | Msa0659390:CDS | 40.0% | |
| ATATTGATGAGGTCGAGGTT+GGG | - | chr4_3:69787483-69787502 | None:intergenic | 40.0% | |
| AATATTGATGAGGTCGAGGT+TGG | - | chr4_3:69787484-69787503 | None:intergenic | 40.0% | |
| GAGTGCATAAAACAGGTTTG+CGG | + | chr4_3:69787517-69787536 | Msa0659390:CDS | 40.0% | |
| TCCAGGTGGCTTAATACTTT+GGG | + | chr4_3:69787573-69787592 | Msa0659390:CDS | 40.0% | |
| GGGTGGTATATTTGAATCTC+TGG | + | chr4_3:69787593-69787612 | Msa0659390:CDS | 40.0% | |
| CTCGAAGCTTAAATCCTCAA+TGG | + | chr4_3:69787625-69787644 | Msa0659390:CDS | 40.0% | |
| TTCTGCTACTCAGTATGTTG+AGG | + | chr4_3:69787659-69787678 | Msa0659390:CDS | 40.0% | |
| TCTGCTACTCAGTATGTTGA+GGG | + | chr4_3:69787660-69787679 | Msa0659390:CDS | 40.0% | |
| !! | TCAAGTTGATGCAATCACTC+TGG | + | chr4_3:69787866-69787885 | Msa0659390:CDS | 40.0% |
| CTTCTCCTGCTAAAATGATC+AGG | + | chr4_3:69787904-69787923 | Msa0659390:CDS | 40.0% | |
| !! | TTACGCCTGATCATTTTAGC+AGG | - | chr4_3:69787912-69787931 | None:intergenic | 40.0% |
| ! | AATTCATTCTCAGTGGTGGA+AGG | + | chr4_3:69787934-69787953 | Msa0659390:CDS | 40.0% |
| !! | AAGAATGTGCTACTTGTTGC+AGG | + | chr4_3:69788496-69788515 | Msa0659390:intron | 40.0% |
| !! | ACTTGTTGCAGGTTGATTGA+AGG | + | chr4_3:69788507-69788526 | Msa0659390:intron | 40.0% |
| ACGCTCAATAAACAACCTTC+TGG | + | chr4_3:69788536-69788555 | Msa0659390:CDS | 40.0% | |
| TTCAACTTCAGAGGAAGATG+TGG | - | chr4_3:69788718-69788737 | None:intergenic | 40.0% | |
| TTGAAGTCAGCCACAAATCT+TGG | + | chr4_3:69788733-69788752 | Msa0659390:CDS | 40.0% | |
| TCAGCCACAAATCTTGGAAA+TGG | + | chr4_3:69788739-69788758 | Msa0659390:CDS | 40.0% | |
| TCAGCCATTTCCAAGATTTG+TGG | - | chr4_3:69788746-69788765 | None:intergenic | 40.0% | |
| ! | GAACTCAGCCAGAAATGTTT+TGG | + | chr4_3:69788764-69788783 | Msa0659390:CDS | 40.0% |
| !! | TTTGTTGTTGGGGTGGAATT+AGG | - | chr4_3:69788846-69788865 | None:intergenic | 40.0% |
| !! | AATGAAGTTTGTTGTTGGGG+TGG | - | chr4_3:69788853-69788872 | None:intergenic | 40.0% |
| ACTTTGCTACAGCTGAAATC+GGG | + | chr4_3:69789039-69789058 | Msa0659390:CDS | 40.0% | |
| ACCTAAAGCAAGATTGCAAG+TGG | - | chr4_3:69789150-69789169 | None:intergenic | 40.0% | |
| ACGAAAAAATATGCTACCGG+AGG | - | chr4_3:69789185-69789204 | None:intergenic | 40.0% | |
| !! | AGTGCTACTTACCTCTATGT+AGG | + | chr4_3:69789284-69789303 | Msa0659390:CDS | 40.0% |
| GGTGAACAATACCTACATAG+AGG | - | chr4_3:69789298-69789317 | None:intergenic | 40.0% | |
| TATTGTTCACCTACCATGCT+GGG | + | chr4_3:69789307-69789326 | Msa0659390:CDS | 40.0% | |
| TTTGGTCCCTGATCTTGTAT+TGG | + | chr4_3:69789509-69789528 | Msa0659390:three_prime_UTR | 40.0% | |
| AAGTTTGCAGTGCAACGTGA+AGG | + | chr4_3:69785034-69785053 | Msa0659390:five_prime_UTR | 45.0% | |
| AGTTTGCAGTGCAACGTGAA+GGG | + | chr4_3:69785035-69785054 | Msa0659390:five_prime_UTR | 45.0% | |
| CAACGTGAAGGGTGAAATTG+AGG | + | chr4_3:69785046-69785065 | Msa0659390:five_prime_UTR | 45.0% | |
| CTGTGTGAACGAAACAATGG+TGG | + | chr4_3:69785121-69785140 | Msa0659390:exon | 45.0% | |
| !!! | ACCAGGCATAAGGGCATTTT+CGG | - | chr4_3:69785408-69785427 | None:intergenic | 45.0% |
| ! | GTTACAAAGGTGGACTCATG+TGG | - | chr4_3:69786061-69786080 | None:intergenic | 45.0% |
| GCGGATATAGACTATAGAGC+CGG | - | chr4_3:69786578-69786597 | None:intergenic | 45.0% | |
| ! | TAGCTTTTGCCCATTTGGAC+GGG | - | chr4_3:69786712-69786731 | None:intergenic | 45.0% |
| ! | GTAGCTTTTGCCCATTTGGA+CGG | - | chr4_3:69786713-69786732 | None:intergenic | 45.0% |
| ! | TCACGTAGCTTTTGCCCATT+TGG | - | chr4_3:69786717-69786736 | None:intergenic | 45.0% |
| TGCACAGTATATGTCAGCCT+TGG | + | chr4_3:69786876-69786895 | Msa0659390:CDS | 45.0% | |
| ! | GGACTGGTGAAAAAGTGCAA+TGG | - | chr4_3:69786952-69786971 | None:intergenic | 45.0% |
| TGGCAAGGAAGCTATTGTCT+TGG | + | chr4_3:69787056-69787075 | Msa0659390:CDS | 45.0% | |
| TCTCCTGGACCTACTTTCTT+TGG | - | chr4_3:69787096-69787115 | None:intergenic | 45.0% | |
| AAAGAAAGTAGGTCCAGGAG+AGG | + | chr4_3:69787095-69787114 | Msa0659390:CDS | 45.0% | |
| ! | ATCGTTGGGCATTGCTTACT+CGG | + | chr4_3:69787122-69787141 | Msa0659390:CDS | 45.0% |
| CGGTGTTCTCACTTCTTTCA+CGG | + | chr4_3:69787142-69787161 | Msa0659390:CDS | 45.0% | |
| GGTGTTCTCACTTCTTTCAC+GGG | + | chr4_3:69787143-69787162 | Msa0659390:CDS | 45.0% | |
| ! | CACTTCTTTCACGGGTTACT+TGG | + | chr4_3:69787151-69787170 | Msa0659390:CDS | 45.0% |
| AATATTCTGCTGTGTCCGCT+TGG | + | chr4_3:69787220-69787239 | Msa0659390:CDS | 45.0% | |
| CGCTTGGCTAAGAGAATATC+AGG | + | chr4_3:69787236-69787255 | Msa0659390:CDS | 45.0% | |
| GTCAGCTTCATGGAAAACAG+GGG | - | chr4_3:69787262-69787281 | None:intergenic | 45.0% | |
| ! | TGTTTTCTCTACTTGGGTCC+AGG | + | chr4_3:69787556-69787575 | Msa0659390:CDS | 45.0% |
| GTCCAGGTGGCTTAATACTT+TGG | + | chr4_3:69787572-69787591 | Msa0659390:CDS | 45.0% | |
| ! | ACCCAAAGTATTAAGCCACC+TGG | - | chr4_3:69787577-69787596 | None:intergenic | 45.0% |
| AGGTGGCTTAATACTTTGGG+TGG | + | chr4_3:69787576-69787595 | Msa0659390:CDS | 45.0% | |
| GGCAAGTTCAATGTATTCCC+AGG | + | chr4_3:69787695-69787714 | Msa0659390:CDS | 45.0% | |
| ATATCATTCCTCCCAGGGTT+TGG | + | chr4_3:69787806-69787825 | Msa0659390:intron | 45.0% | |
| TATCATTCCTCCCAGGGTTT+GGG | + | chr4_3:69787807-69787826 | Msa0659390:intron | 45.0% | |
| GGGCATCACACCACATATTT+AGG | - | chr4_3:69788055-69788074 | None:intergenic | 45.0% | |
| AGTTCAGTCTCAGTCGTTAG+AGG | + | chr4_3:69788180-69788199 | Msa0659390:intron | 45.0% | |
| ACTGATGGAACTTCTCCAGA+AGG | - | chr4_3:69788554-69788573 | None:intergenic | 45.0% | |
| GGTGCAACCAGTAATGCAAA+TGG | - | chr4_3:69788639-69788658 | None:intergenic | 45.0% | |
| ! | TGGATTTGCTTGCATCAGCA+TGG | - | chr4_3:69788686-69788705 | None:intergenic | 45.0% |
| GATGGAGCAGCTTCGAAAAT+TGG | - | chr4_3:69788933-69788952 | None:intergenic | 45.0% | |
| TCAACCCAAGAAAGGCGAAT+GGG | + | chr4_3:69788953-69788972 | Msa0659390:CDS | 45.0% | |
| CTTTGCTACAGCTGAAATCG+GGG | + | chr4_3:69789040-69789059 | Msa0659390:CDS | 45.0% | |
| ! | CATTGTCCCGATTTGTCTGA+TGG | + | chr4_3:69789070-69789089 | Msa0659390:CDS | 45.0% |
| GCCACTTGCAATCTTGCTTT+AGG | + | chr4_3:69789146-69789165 | Msa0659390:CDS | 45.0% | |
| TGGTGATTATTGGAACTGGG+TGG | + | chr4_3:69789241-69789260 | Msa0659390:CDS | 45.0% | |
| AGCACTGTTCCATGTCCAAA+GGG | - | chr4_3:69789270-69789289 | None:intergenic | 45.0% | |
| TAGCACTGTTCCATGTCCAA+AGG | - | chr4_3:69789271-69789290 | None:intergenic | 45.0% | |
| GTATTGTTCACCTACCATGC+TGG | + | chr4_3:69789306-69789325 | Msa0659390:CDS | 45.0% | |
| AGACGGGGAATGCTATACTT+TGG | + | chr4_3:69789491-69789510 | Msa0659390:three_prime_UTR | 45.0% | |
| CGTACGATTGGGCGAATTCT+CGG | - | chr4_3:69785173-69785192 | None:intergenic | 50.0% | |
| CGAGAATTCGCCCAATCGTA+CGG | + | chr4_3:69785171-69785190 | Msa0659390:CDS | 50.0% | |
| ATTCGCCCAATCGTACGGTT+AGG | + | chr4_3:69785176-69785195 | Msa0659390:CDS | 50.0% | |
| TTCGCCCAATCGTACGGTTA+GGG | + | chr4_3:69785177-69785196 | Msa0659390:CDS | 50.0% | |
| TCCGAAAATGCCCTTATGCC+TGG | + | chr4_3:69785404-69785423 | Msa0659390:CDS | 50.0% | |
| TATGTCAGCCTTGGATGCTG+AGG | + | chr4_3:69786885-69786904 | Msa0659390:CDS | 50.0% | |
| GACTATACCCGAATCAGGAC+TGG | - | chr4_3:69786968-69786987 | None:intergenic | 50.0% | |
| ! | ATTAGAGCACCAAGGGGTGA+TGG | + | chr4_3:69787036-69787055 | Msa0659390:CDS | 50.0% |
| ! | TCCAGGAGAGGCTTTATCGT+TGG | + | chr4_3:69787107-69787126 | Msa0659390:CDS | 50.0% |
| ! | CCAGGAGAGGCTTTATCGTT+GGG | + | chr4_3:69787108-69787127 | Msa0659390:CDS | 50.0% |
| ! | TCTTTCACGGGTTACTTGGC+TGG | + | chr4_3:69787155-69787174 | Msa0659390:CDS | 50.0% |
| GGCTGGCAAAGGATGTCATA+TGG | + | chr4_3:69787172-69787191 | Msa0659390:CDS | 50.0% | |
| !!! | TACGGTGGTTTTAGACGTGC+TGG | + | chr4_3:69787360-69787379 | Msa0659390:CDS | 50.0% |
| ! | ATCTACCCTGAGGCGTCAAA+TGG | + | chr4_3:69787450-69787469 | Msa0659390:CDS | 50.0% |
| ! | TCTACCCTGAGGCGTCAAAT+GGG | + | chr4_3:69787451-69787470 | Msa0659390:CDS | 50.0% |
| TTTCTCTACTTGGGTCCAGG+TGG | + | chr4_3:69787559-69787578 | Msa0659390:CDS | 50.0% | |
| ! | AAGGCACCATGAGAACCAGT+GGG | - | chr4_3:69787837-69787856 | None:intergenic | 50.0% |
| TCACAATCACACCTCCCTCT+TGG | - | chr4_3:69788356-69788375 | None:intergenic | 50.0% | |
| ! | AGAGGGAGGTGTGATTGTGA+TGG | + | chr4_3:69788356-69788375 | Msa0659390:intron | 50.0% |
| TGCACCACTTCCGATAGTTG+CGG | + | chr4_3:69788653-69788672 | Msa0659390:CDS | 50.0% | |
| TGGAGAGATGCCGCAACTAT+CGG | - | chr4_3:69788666-69788685 | None:intergenic | 50.0% | |
| ! | GGAAGATGTGGATTGCAGAG+TGG | - | chr4_3:69788706-69788725 | None:intergenic | 50.0% |
| ! | GTGGCTGACTTCAACTTCAG+AGG | - | chr4_3:69788727-69788746 | None:intergenic | 50.0% |
| GCTCCATCTCAACCCAAGAA+AGG | + | chr4_3:69788945-69788964 | Msa0659390:CDS | 50.0% | |
| !! | TCGCCTTTCTTGGGTTGAGA+TGG | - | chr4_3:69788951-69788970 | None:intergenic | 50.0% |
| CTCAACCCAAGAAAGGCGAA+TGG | + | chr4_3:69788952-69788971 | Msa0659390:CDS | 50.0% | |
| CTAGCCCATTCGCCTTTCTT+GGG | - | chr4_3:69788960-69788979 | None:intergenic | 50.0% | |
| GTCGAGCCATCAGACAAATC+GGG | - | chr4_3:69789079-69789098 | None:intergenic | 50.0% | |
| GGTCGAGCCATCAGACAAAT+CGG | - | chr4_3:69789080-69789099 | None:intergenic | 50.0% | |
| GCTCGAGCATCAAGCTTCAA+CGG | - | chr4_3:69789101-69789120 | None:intergenic | 50.0% | |
| TGAAGCTTGATGCTCGAGCT+AGG | + | chr4_3:69789102-69789121 | Msa0659390:CDS | 50.0% | |
| GAGCTTGAGAGCCTTACTGA+GGG | + | chr4_3:69789124-69789143 | Msa0659390:CDS | 50.0% | |
| ATTGCAAGTGGCCCTCAGTA+AGG | - | chr4_3:69789138-69789157 | None:intergenic | 50.0% | |
| ! | TGAATGCAAAGTGCCCAGCA+TGG | - | chr4_3:69789323-69789342 | None:intergenic | 50.0% |
| GGTGGAAAACGACAGCGTAC+CGG | + | chr4_3:69785139-69785158 | Msa0659390:CDS | 55.0% | |
| CCCAACGATAAAGCCTCTCC+TGG | - | chr4_3:69787111-69787130 | None:intergenic | 55.0% | |
| ! | ACGGGTTACTTGGCTGGCAA+AGG | + | chr4_3:69787161-69787180 | Msa0659390:CDS | 55.0% |
| TCTGCCCATTTGACGCCTCA+GGG | - | chr4_3:69787458-69787477 | None:intergenic | 55.0% | |
| ATCTGCCCATTTGACGCCTC+AGG | - | chr4_3:69787459-69787478 | None:intergenic | 55.0% | |
| TGTTGAGGGAGCTGCTACAC+TGG | + | chr4_3:69787674-69787693 | Msa0659390:CDS | 55.0% | |
| AGTGGGAACACCCAAACCCT+GGG | - | chr4_3:69787820-69787839 | None:intergenic | 55.0% | |
| !! | GGTGTTCCCACTGGTTCTCA+TGG | + | chr4_3:69787828-69787847 | Msa0659390:CDS | 55.0% |
| !! | GAAGGCACCATGAGAACCAG+TGG | - | chr4_3:69787838-69787857 | None:intergenic | 55.0% |
| GATGCCGCAACTATCGGAAG+TGG | - | chr4_3:69788660-69788679 | None:intergenic | 55.0% | |
| GCTAGCCCATTCGCCTTTCT+TGG | - | chr4_3:69788961-69788980 | None:intergenic | 55.0% | |
| GGAGCTTGAGAGCCTTACTG+AGG | + | chr4_3:69789123-69789142 | Msa0659390:CDS | 55.0% | |
| GGAACTGGGTGGAATCCCTT+TGG | + | chr4_3:69789252-69789271 | Msa0659390:CDS | 55.0% | |
| GGGTGGAATCCCTTTGGACA+TGG | + | chr4_3:69789258-69789277 | Msa0659390:CDS | 55.0% | |
| ! | TGCAAAGTGCCCAGCATGGT+AGG | - | chr4_3:69789319-69789338 | None:intergenic | 55.0% |
| ! | AGCACCAAGGGGTGATGGCA+AGG | + | chr4_3:69787041-69787060 | Msa0659390:CDS | 60.0% |
| GCTTCCTTGCCATCACCCCT+TGG | - | chr4_3:69787048-69787067 | None:intergenic | 60.0% | |
| CAGTGGGAACACCCAAACCC+TGG | - | chr4_3:69787821-69787840 | None:intergenic | 60.0% | |
| CAGGGTTTGGGTGTTCCCAC+TGG | + | chr4_3:69787819-69787838 | Msa0659390:intron | 60.0% | |
| GGGAACACCCAAACCCTGGG+AGG | - | chr4_3:69787817-69787836 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 69784907 | 69789546 | 69784907 | ID=Msa0659390;Name=Msa0659390 |
| chr4_3 | mRNA | 69784907 | 69789546 | 69784907 | ID=Msa0659390-mRNA-1;Parent=Msa0659390;Name=Msa0659390-mRNA-1;_AED=0.11;_eAED=0.11;_QI=230|0.6|0.83|0.83|0.6|0.83|6|182|692 |
| chr4_3 | exon | 69784907 | 69785231 | 69784907 | ID=Msa0659390-mRNA-1:exon:20542;Parent=Msa0659390-mRNA-1 |
| chr4_3 | exon | 69785334 | 69785425 | 69785334 | ID=Msa0659390-mRNA-1:exon:20543;Parent=Msa0659390-mRNA-1 |
| chr4_3 | exon | 69786634 | 69786685 | 69786634 | ID=Msa0659390-mRNA-1:exon:20544;Parent=Msa0659390-mRNA-1 |
| chr4_3 | exon | 69786858 | 69787716 | 69786858 | ID=Msa0659390-mRNA-1:exon:20545;Parent=Msa0659390-mRNA-1 |
| chr4_3 | exon | 69787822 | 69787955 | 69787822 | ID=Msa0659390-mRNA-1:exon:20546;Parent=Msa0659390-mRNA-1 |
| chr4_3 | exon | 69788518 | 69789546 | 69788518 | ID=Msa0659390-mRNA-1:exon:20547;Parent=Msa0659390-mRNA-1 |
| chr4_3 | five_prime_UTR | 69784907 | 69785136 | 69784907 | ID=Msa0659390-mRNA-1:five_prime_utr;Parent=Msa0659390-mRNA-1 |
| chr4_3 | CDS | 69785137 | 69785231 | 69785137 | ID=Msa0659390-mRNA-1:cds;Parent=Msa0659390-mRNA-1 |
| chr4_3 | CDS | 69785334 | 69785425 | 69785334 | ID=Msa0659390-mRNA-1:cds;Parent=Msa0659390-mRNA-1 |
| chr4_3 | CDS | 69786634 | 69786685 | 69786634 | ID=Msa0659390-mRNA-1:cds;Parent=Msa0659390-mRNA-1 |
| chr4_3 | CDS | 69786858 | 69787716 | 69786858 | ID=Msa0659390-mRNA-1:cds;Parent=Msa0659390-mRNA-1 |
| chr4_3 | CDS | 69787822 | 69787955 | 69787822 | ID=Msa0659390-mRNA-1:cds;Parent=Msa0659390-mRNA-1 |
| chr4_3 | CDS | 69788518 | 69789364 | 69788518 | ID=Msa0659390-mRNA-1:cds;Parent=Msa0659390-mRNA-1 |
| chr4_3 | three_prime_UTR | 69789365 | 69789546 | 69789365 | ID=Msa0659390-mRNA-1:three_prime_utr;Parent=Msa0659390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
