AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0659610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0659610 MtrunA17_Chr8g0384891 93.071 534 37 0 1 534 1 534 0.0 981
Msa0659610 MtrunA17_Chr3g0130841 71.293 526 135 7 11 533 5 517 0.0 738
Msa0659610 MtrunA17_Chr8g0386311 53.347 493 213 8 7 489 3 488 4.17e-170 491
Msa0659610 MtrunA17_Chr3g0132111 56.823 447 184 7 45 486 37 479 1.01e-163 475
Msa0659610 MtrunA17_Chr8g0355581 85.507 69 10 0 40 108 43 111 2.94e-31 117
Msa0659610 MtrunA17_Chr3g0141651 31.818 132 83 3 233 362 79 205 1.47e-14 72.8
Msa0659610 MtrunA17_Chr6g0465921 80.556 36 7 0 59 94 38 73 4.72e-12 61.6
Msa0659610 MtrunA17_Chr6g0466131 78.378 37 8 0 59 95 7 43 5.66e-12 60.5
Msa0659610 MtrunA17_Chr6g0465971 78.378 37 8 0 59 95 7 43 5.66e-12 60.5
Msa0659610 MtrunA17_Chr6g0465861 71.429 42 12 0 54 95 23 64 2.34e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0659610 AT3G52950.1 65.138 545 172 7 2 534 17 555 0.0 667
Msa0659610 AT3G52950.2 65.138 545 172 7 2 534 17 555 0.0 667
Msa0659610 AT2G36500.1 64.833 509 163 8 28 534 41 535 0.0 638
Msa0659610 AT5G50640.1 54.157 445 195 4 45 486 59 497 7.37e-165 479
Msa0659610 AT5G50530.1 54.157 445 195 4 45 486 59 497 7.37e-165 479
Msa0659610 AT5G63490.1 52.521 476 217 4 12 485 19 487 1.99e-153 450
Msa0659610 AT5G63490.2 52.521 476 217 4 12 485 19 487 1.99e-153 450

Find 139 sgRNAs with CRISPR-Local

Find 500 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAACGCTCATTACATTAA+AGG 0.146254 4_3:+70001842 Msa0659610:three_prime_UTR
GATGCCAATGCTTTGTTATC+TGG 0.184149 4_3:+69994916 Msa0659610:CDS
TCAGGCATTAAAGTTGTATT+TGG 0.192988 4_3:+70001598 Msa0659610:intron
GCCAAAGTTATTAGTTAAAA+TGG 0.202093 4_3:+70001950 Msa0659610:three_prime_UTR
TAATGTAATGAGCGTTTAAA+AGG 0.250558 4_3:-70001838 None:intergenic
GCATATCACTCTATGGGTTT+TGG 0.262451 4_3:+70001046 Msa0659610:CDS
TTCTGTAGCTTTATGTTTCT+AGG 0.274740 4_3:+69999469 Msa0659610:intron
GAAAGGATATATACTGAAAT+AGG 0.298141 4_3:+70001864 Msa0659610:three_prime_UTR
TTAAAGTTGTATTTGGATTT+CGG 0.301088 4_3:+70001605 Msa0659610:CDS
AGGAGGAGAAGAAGGTTTGC+TGG 0.303547 4_3:-69994622 None:intergenic
AAAGTCTGCATATCACTCTA+TGG 0.304258 4_3:+70001039 Msa0659610:CDS
ACTCTCGTTTAGAAGGATTA+AGG 0.309704 4_3:-70002024 None:intergenic
CTCCGCTCCAGTATTCTTGC+AGG 0.312593 4_3:+70001695 Msa0659610:CDS
AACACTAGATTTCTGTATAC+TGG 0.317563 4_3:-70001666 None:intergenic
CACCTGCCTGTTGTGGAAAA+TGG 0.317793 4_3:+69998151 Msa0659610:CDS
TTCATTTCCTTTCAAATTTG+AGG 0.322938 4_3:+70001072 Msa0659610:CDS
ATGTCCCCTCAGATATAGTT+AGG 0.323701 4_3:-69994834 None:intergenic
TATACATACTCTCGTTTAGA+AGG 0.330141 4_3:-70002031 None:intergenic
GTATCTAGTGTTGCACAATC+TGG 0.332767 4_3:-70000295 None:intergenic
AAACCGCAAAACACATCATT+TGG 0.344466 4_3:-70001765 None:intergenic
TTTCTCCTCTAGGTAAATTC+AGG 0.353716 4_3:+69998128 Msa0659610:intron
CTCAGATATAGTTAGGGCTT+TGG 0.355668 4_3:-69994827 None:intergenic
ATGGTGGTGGCTGGTGGAGG+AGG 0.358091 4_3:+69994434 Msa0659610:five_prime_UTR
CGACACGCCGCGCCGCCATT+CGG 0.369486 4_3:-69994876 None:intergenic
AACAGCACCTGCAAGAATAC+TGG 0.371929 4_3:-70001702 None:intergenic
TTGATGGTGGTGGCTGGTGG+AGG 0.372735 4_3:+69994431 Msa0659610:five_prime_UTR
GTATCCGATGTCACAAATAA+AGG 0.374783 4_3:-69995134 None:intergenic
TTTAAAAGGCAAAGGAGCTT+AGG 0.381282 4_3:-70001824 None:intergenic
GCAATTGCAGCTGCAGTTGA+AGG 0.387906 4_3:+69998256 Msa0659610:CDS
GCTGTTATTGTGTCATTGTC+AGG 0.388446 4_3:+69999564 Msa0659610:CDS
AGCCTTCTCCATCCTTGATA+TGG 0.388513 4_3:-69998218 None:intergenic
TGGTGAAGTCATTGCCATAC+TGG 0.394195 4_3:+69998171 Msa0659610:CDS
GATGGAGAAGGCTGCTGAGC+AGG 0.396925 4_3:+69998228 Msa0659610:CDS
CGTGAGTATGCCCTGAATCT+TGG 0.398117 4_3:-69999589 None:intergenic
GAAGGCGATAGAATTGTTCT+TGG 0.401351 4_3:+70001412 Msa0659610:CDS
ATTGTCAGGAACCAAGATTC+AGG 0.402004 4_3:+69999578 Msa0659610:CDS
CTATGAGTATCAGAATCTTC+TGG 0.410265 4_3:-70000891 None:intergenic
GTACTAGATTGCGGTGTTGT+TGG 0.419894 4_3:-70001641 None:intergenic
TATGGCATCATAAAGACATT+TGG 0.420433 4_3:-69998200 None:intergenic
TCTGTAGCTTTATGTTTCTA+GGG 0.424061 4_3:+69999470 Msa0659610:intron
AGAGAGGAGAAAGAGTTTGA+TGG 0.428430 4_3:+69994415 Msa0659610:five_prime_UTR
ACACAACAATGAGAAACGTT+GGG 0.434030 4_3:+70002071 Msa0659610:three_prime_UTR
TATCTAGTGTTGCACAATCT+GGG 0.434760 4_3:-70000294 None:intergenic
ACATTTGGTAATATCCAGTA+TGG 0.438515 4_3:-69998185 None:intergenic
TCGAGGGAAGGAGGAGAAGA+AGG 0.438901 4_3:-69994630 None:intergenic
GATTAAGGAGAAAGGATTAC+CGG 0.442811 4_3:-70002009 None:intergenic
CCTTAGGTTGAGAGTAGCTC+TGG 0.453539 4_3:+70000801 Msa0659610:intron
CAGAAGATTCTGATACTCAT+AGG 0.453728 4_3:+70000892 Msa0659610:CDS
CGAGTTGACTCTAGTGGAAA+AGG 0.458340 4_3:+70000108 Msa0659610:CDS
TTCAAATTTGAGGATCTCAA+TGG 0.458350 4_3:+70001082 Msa0659610:CDS
TTTAGAAGGATTAAGGAGAA+AGG 0.468891 4_3:-70002017 None:intergenic
TTAAAAGGCAAAGGAGCTTA+GGG 0.469400 4_3:-70001823 None:intergenic
ATGAAATGAATTAGGTCTGA+TGG 0.475002 4_3:+69994772 Msa0659610:intron
CAGCGGGGTAGCAATGCATC+TGG 0.482648 4_3:+69998289 Msa0659610:CDS
CAGAGAACGCCCTGCGATTG+TGG 0.483975 4_3:+70001292 Msa0659610:CDS
TTTACAAATTCAAATACAAT+CGG 0.486377 4_3:-69998358 None:intergenic
TTTGACACCATTGTCTGATC+CGG 0.486563 4_3:-69995095 None:intergenic
GTCTTTATGATGCCATATCA+AGG 0.492269 4_3:+69998206 Msa0659610:CDS
GTCAGCTATGCTAGAACTGC+AGG 0.497273 4_3:+70001460 Msa0659610:CDS
TTGAAGGCGCAGAACGCCAG+CGG 0.497855 4_3:+69998272 Msa0659610:CDS
TATTGATGCTCTTCAAAAGA+TGG 0.498989 4_3:+69995163 Msa0659610:CDS
AGCAGAAACAAGATCATTGT+CGG 0.499187 4_3:-70001437 None:intergenic
TGAAGGCGCAGAACGCCAGC+GGG 0.499881 4_3:+69998273 Msa0659610:CDS
GTCTCTGGCGTAACCGCCGC+CGG 0.502586 4_3:+70001990 Msa0659610:three_prime_UTR
GATAGTTACCACAGTTGAAT+CGG 0.505314 4_3:-70001114 None:intergenic
AAGAGTTTGATGGTGGTGGC+TGG 0.506870 4_3:+69994425 Msa0659610:five_prime_UTR
TTATAGTATGAGGACGATGA+AGG 0.510197 4_3:+70001394 Msa0659610:intron
AACTCATGCGGCAATTTCCC+TGG 0.516393 4_3:+70000496 Msa0659610:CDS
AAGAAGAAAAGAAAAGAGAG+AGG 0.521506 4_3:+69994399 Msa0659610:five_prime_UTR
GTGTAGTAGTCTACCTAAAA+CGG 0.526760 4_3:+70001741 Msa0659610:CDS
AGTTTGATGGTGGTGGCTGG+TGG 0.526997 4_3:+69994428 Msa0659610:five_prime_UTR
ATGGAGAAGGCTGCTGAGCA+GGG 0.528674 4_3:+69998229 Msa0659610:CDS
TACACAACAATGAGAAACGT+TGG 0.529613 4_3:+70002070 Msa0659610:three_prime_UTR
TTGAGATCCTCAAATTTGAA+AGG 0.532138 4_3:-70001079 None:intergenic
GGAGAAGAAGGTTTGCTGGA+AGG 0.534164 4_3:-69994618 None:intergenic
TATTGCCGAGGGTTTGCGAC+CGG 0.534693 4_3:+69995076 Msa0659610:CDS
ATAAAACAAACCACAATCGC+AGG 0.537770 4_3:-70001302 None:intergenic
AAGAATTACTCGAGGGAAGG+AGG 0.538608 4_3:-69994639 None:intergenic
ATTCAGGCACCTGCCTGTTG+TGG 0.542660 4_3:+69998144 Msa0659610:CDS
TGCTAGAACTGCAGGAGTGA+AGG 0.544272 4_3:+70001468 Msa0659610:CDS
GAATCCTTTATTTGTGACAT+CGG 0.544493 4_3:+69995130 Msa0659610:CDS
CAAAGCCCTAACTATATCTG+AGG 0.544935 4_3:+69994828 Msa0659610:CDS
TTGTCAGGAACCAAGATTCA+GGG 0.548078 4_3:+69999579 Msa0659610:CDS
ACATCTTTCATGCAGTTCAA+AGG 0.548129 4_3:+70000048 Msa0659610:intron
AGATGCATGTCGCCGAATGG+CGG 0.553073 4_3:+69994864 Msa0659610:CDS
CGCTCATTACATTAAAGGAA+AGG 0.553687 4_3:+70001847 Msa0659610:three_prime_UTR
CACTACATATGATGCACGAT+GGG 0.554634 4_3:+70000332 Msa0659610:CDS
TGGAGAAGGCTGCTGAGCAG+GGG 0.555488 4_3:+69998230 Msa0659610:CDS
AAGTCTGCATATCACTCTAT+GGG 0.560666 4_3:+70001040 Msa0659610:CDS
GTCTAACGAGGAGGAACAGT+GGG 0.564817 4_3:+69994538 Msa0659610:CDS
CTGATCCGGTCGCAAACCCT+CGG 0.565957 4_3:-69995081 None:intergenic
GCTGTTGTTGTAACAAGCAT+TGG 0.567474 4_3:+70001719 Msa0659610:CDS
TCAGCGCTCATGACCTCGGA+TGG 0.570520 4_3:+70001004 Msa0659610:CDS
CAGATGCATTGCTACCCCGC+TGG 0.572178 4_3:-69998288 None:intergenic
GAGGAGAAAGAGTTTGATGG+TGG 0.573987 4_3:+69994418 Msa0659610:five_prime_UTR
AATTCCAGATAACAAAGCAT+TGG 0.574940 4_3:-69994920 None:intergenic
ACAAATTCAAATACAATCGG+TGG 0.578684 4_3:-69998355 None:intergenic
TTCAGATGCATGTCGCCGAA+TGG 0.583678 4_3:+69994861 Msa0659610:CDS
TGTCCCCTCAGATATAGTTA+GGG 0.584020 4_3:-69994833 None:intergenic
GCTCTTCAAAAGATGGTACA+AGG 0.584139 4_3:+69995170 Msa0659610:CDS
TTATGATGCCATATCAAGGA+TGG 0.584285 4_3:+69998210 Msa0659610:CDS
GCTACTAGAGTTATTGCCGA+GGG 0.586528 4_3:+69995065 Msa0659610:CDS
GAGAAAGAGTTTGATGGTGG+TGG 0.587527 4_3:+69994421 Msa0659610:five_prime_UTR
AGCTCACGTCTGTCTACCAC+AGG 0.591472 4_3:-70000370 None:intergenic
TGTTGTATCTGCTCCATCCG+AGG 0.594121 4_3:-70001017 None:intergenic
ATTTGTGACATCGGATACGT+TGG 0.607982 4_3:+69995139 Msa0659610:CDS
AAAGCCCTAACTATATCTGA+GGG 0.609048 4_3:+69994829 Msa0659610:CDS
TTAGGTCTGATGGAGGTGAA+AGG 0.611341 4_3:+69994782 Msa0659610:intron
CTCTGGAGCTGTTAATGATG+TGG 0.611756 4_3:+70000818 Msa0659610:CDS
AAAGGACGGTTAAGAAGCTA+CGG 0.614907 4_3:+69994800 Msa0659610:CDS
ATCTGGAATTATGACTGACA+AGG 0.615486 4_3:+69994933 Msa0659610:CDS
TGCCATATCAAGGATGGAGA+AGG 0.620501 4_3:+69998216 Msa0659610:CDS
TGGTGTCAAAAGTAATGACT+CGG 0.622017 4_3:+69995108 Msa0659610:CDS
AGTTTCAGCGCTCATGACCT+CGG 0.625573 4_3:+70001000 Msa0659610:CDS
CACAACAATGAGAAACGTTG+GGG 0.627801 4_3:+70002072 Msa0659610:three_prime_UTR
CATGTCGCCGAATGGCGGCG+CGG 0.628384 4_3:+69994869 Msa0659610:CDS
AATGAGCGTTTAAAAGGCAA+AGG 0.628570 4_3:-70001832 None:intergenic
GTCTGATGGAGGTGAAAGGA+CGG 0.633636 4_3:+69994786 Msa0659610:CDS
GGAGAAAGGATTACCGGCGG+CGG 0.637593 4_3:-70002003 None:intergenic
GTTTGCTGGAAGGTTCGCTG+TGG 0.641107 4_3:-69994608 None:intergenic
ACAGACAGAGAAAGAGACAG+AGG 0.645289 4_3:-69994494 None:intergenic
TTTGCGACCGGATCAGACAA+TGG 0.653227 4_3:+69995088 Msa0659610:CDS
GAAATTCTTACATCTTCCTG+TGG 0.653654 4_3:+70000354 Msa0659610:CDS
TAAAACAAACCACAATCGCA+GGG 0.657682 4_3:-70001301 None:intergenic
TTTCCACTAGAGTCAACTCG+GGG 0.660746 4_3:-70000105 None:intergenic
ATACTGGTTGTACTAGATTG+CGG 0.665901 4_3:-70001650 None:intergenic
TGAGTATCAGAATCTTCTGG+TGG 0.666166 4_3:-70000888 None:intergenic
TGCTACTAGAGTTATTGCCG+AGG 0.666362 4_3:+69995064 Msa0659610:CDS
CGCGTGCACCGATTCAACTG+TGG 0.670918 4_3:+70001106 Msa0659610:CDS
AAAACATGAACGGTCTAACG+AGG 0.686040 4_3:+69994526 Msa0659610:exon
ACATGAACGGTCTAACGAGG+AGG 0.691673 4_3:+69994529 Msa0659610:exon
GCACTACATATGATGCACGA+TGG 0.693308 4_3:+70000331 Msa0659610:CDS
CACCTGCAAGAATACTGGAG+CGG 0.693998 4_3:-70001697 None:intergenic
AAATGAATTAGGTCTGATGG+AGG 0.697849 4_3:+69994775 Msa0659610:intron
GGTCTAACGAGGAGGAACAG+TGG 0.699295 4_3:+69994537 Msa0659610:CDS
TAAGGAGAAAGGATTACCGG+CGG 0.734837 4_3:-70002006 None:intergenic
GAAGGCGCAGAACGCCAGCG+GGG 0.735602 4_3:+69998274 Msa0659610:CDS
AAGCCCTAACTATATCTGAG+GGG 0.744980 4_3:+69994830 Msa0659610:CDS
TTCCACTAGAGTCAACTCGG+GGG 0.776990 4_3:-70000104 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATATCATTGTTATTATT+GGG + chr4_3:69995218-69995237 Msa0659610:intron 10.0%
!! TGTTATTAATGAAATGAATT+AGG + chr4_3:69994764-69994783 Msa0659610:intron 15.0%
!!! CTTAATATCATTGTTATTAT+TGG + chr4_3:69995217-69995236 Msa0659610:intron 15.0%
!! TGTATTAAATTAATTACGAT+TGG - chr4_3:69995328-69995347 None:intergenic 15.0%
!! AGAAAAATATTGTAATCATT+TGG + chr4_3:69995890-69995909 Msa0659610:intron 15.0%
!! TAAATGATTGAATGATTATT+TGG - chr4_3:69997428-69997447 None:intergenic 15.0%
!! ATACAACAAAATAATTAAGT+GGG + chr4_3:69997557-69997576 Msa0659610:intron 15.0%
!! AAAAACTATAAATGAAAGAA+AGG - chr4_3:69997820-69997839 None:intergenic 15.0%
!! TTTACAAATTCAAATACAAT+CGG - chr4_3:69998361-69998380 None:intergenic 15.0%
!! TATATATTATATATCACTGT+TGG + chr4_3:69998469-69998488 Msa0659610:intron 15.0%
!!! ATTTTTAAAACTGATTTGAA+TGG + chr4_3:69999060-69999079 Msa0659610:intron 15.0%
!! TTTATGTTATTCCATATAAT+GGG - chr4_3:69999656-69999675 None:intergenic 15.0%
!! ATTTATGTTATTCCATATAA+TGG - chr4_3:69999657-69999676 None:intergenic 15.0%
!! AATATATTGTAGAAACAAAA+GGG - chr4_3:69999739-69999758 None:intergenic 15.0%
!!! ATACAATTATGCAAAAATTT+TGG + chr4_3:70000844-70000863 Msa0659610:CDS 15.0%
!!! TACAATTATGCAAAAATTTT+GGG + chr4_3:70000845-70000864 Msa0659610:CDS 15.0%
!!! AATGGTAACTTATATTTTTT+TGG + chr4_3:70001968-70001987 Msa0659610:three_prime_UTR 15.0%
!! TTTGAAAAACAAAACATGAA+CGG + chr4_3:69994516-69994535 Msa0659610:exon 20.0%
!! ATTTAGTTAATTGAATCTAG+AGG + chr4_3:69994679-69994698 Msa0659610:intron 20.0%
!! ACCATTATAATCATATATCA+TGG + chr4_3:69995564-69995583 Msa0659610:intron 20.0%
!! ACCATGATATATGATTATAA+TGG - chr4_3:69995568-69995587 None:intergenic 20.0%
!! CTATTCTTATTAAAGAAGAT+AGG - chr4_3:69995731-69995750 None:intergenic 20.0%
!! AAACAAAATCAATAAAACCA+TGG - chr4_3:69996909-69996928 None:intergenic 20.0%
!!! ATGCCATTTTTTTATTTTGA+GGG - chr4_3:69997057-69997076 None:intergenic 20.0%
!!! AGTTTTCAATAGTTTTTATG+TGG + chr4_3:69997486-69997505 Msa0659610:intron 20.0%
!!! GTTTTCAATAGTTTTTATGT+GGG + chr4_3:69997487-69997506 Msa0659610:intron 20.0%
!!! CACTTAATTATTTTGTTGTA+TGG - chr4_3:69997558-69997577 None:intergenic 20.0%
!! CATACAACAAAATAATTAAG+TGG + chr4_3:69997556-69997575 Msa0659610:intron 20.0%
!! TACAACAAAATAATTAAGTG+GGG + chr4_3:69997558-69997577 Msa0659610:intron 20.0%
!! AAATTAACTGTATCAAGTAA+TGG - chr4_3:69997794-69997813 None:intergenic 20.0%
!! TAAAAAGATATGTATGTATG+TGG - chr4_3:69998390-69998409 None:intergenic 20.0%
!!! TTAAGAGTATACTAAATGAT+AGG - chr4_3:69998528-69998547 None:intergenic 20.0%
!!! AATTTTAATCAAAAAGCGTA+TGG + chr4_3:69998574-69998593 Msa0659610:intron 20.0%
!! AAAACATAATACCAAGTTTA+AGG - chr4_3:69998658-69998677 None:intergenic 20.0%
!!! TTTTTATATCTAAAATGGAC+TGG + chr4_3:69998758-69998777 Msa0659610:intron 20.0%
!!! TTTTATATCTAAAATGGACT+GGG + chr4_3:69998759-69998778 Msa0659610:intron 20.0%
!!! TTTTTGCTTATATTTCATTC+CGG - chr4_3:69999294-69999313 None:intergenic 20.0%
!! CCAATTTCAATATCATTAAA+GGG - chr4_3:69999707-69999726 None:intergenic 20.0%
!! CCTTTAATGATATTGAAATT+GGG + chr4_3:69999705-69999724 Msa0659610:intron 20.0%
!! ATATATTGTAGAAACAAAAG+GGG - chr4_3:69999738-69999757 None:intergenic 20.0%
!! CAATATATTGTAGAAACAAA+AGG - chr4_3:69999740-69999759 None:intergenic 20.0%
!!! CTTTTGTTTCTACAATATAT+TGG + chr4_3:69999738-69999757 Msa0659610:intron 20.0%
!!! TTTTTTTGAAGTAACATAAG+TGG + chr4_3:70000142-70000161 Msa0659610:intron 20.0%
!!! AGCTTCAATTTTATAAAAAG+TGG - chr4_3:70000703-70000722 None:intergenic 20.0%
!! TTCTATGGAATAATTTCATT+TGG + chr4_3:70001536-70001555 Msa0659610:intron 20.0%
!! TTAAAGTTGTATTTGGATTT+CGG + chr4_3:70001605-70001624 Msa0659610:CDS 20.0%
!!! ATATTGAGTCTTTTTTTGTT+TGG + chr4_3:70001899-70001918 Msa0659610:three_prime_UTR 20.0%
!!! TATTGAGTCTTTTTTTGTTT+GGG + chr4_3:70001900-70001919 Msa0659610:three_prime_UTR 20.0%
!!! ACCATTTTAACTAATAACTT+TGG - chr4_3:70001954-70001973 None:intergenic 20.0%
! AAGAAAAAAGAATTACTCGA+GGG - chr4_3:69994649-69994668 None:intergenic 25.0%
! AAAGAAAAAAGAATTACTCG+AGG - chr4_3:69994650-69994669 None:intergenic 25.0%
!! TATGATATTTCTGATATGAC+AGG + chr4_3:69995416-69995435 Msa0659610:intron 25.0%
! ATCGAATAACGATAATAGTT+TGG + chr4_3:69995634-69995653 Msa0659610:intron 25.0%
! CTTTAATAAGAATAGACTCT+AGG + chr4_3:69995736-69995755 Msa0659610:intron 25.0%
!! TTATTTTCAATGAGTTTCTC+AGG + chr4_3:69995932-69995951 Msa0659610:intron 25.0%
! CACTTATGTTATTGAAACAT+TGG + chr4_3:69995967-69995986 Msa0659610:intron 25.0%
! TTAGATAGATCCAATAGAAT+AGG + chr4_3:69996034-69996053 Msa0659610:intron 25.0%
! AATGCCAAAGCTATAAATAA+GGG + chr4_3:69996146-69996165 Msa0659610:intron 25.0%
!!! GTTTGTTATGAACAACTTTT+TGG - chr4_3:69996344-69996363 None:intergenic 25.0%
!!! TCTTTTTTGGTGAAAAAAGA+GGG - chr4_3:69996725-69996744 None:intergenic 25.0%
!!! TTCTTTTTTGGTGAAAAAAG+AGG - chr4_3:69996726-69996745 None:intergenic 25.0%
!!! GCTATTCTTTCTTTCTTTTT+TGG - chr4_3:69996738-69996757 None:intergenic 25.0%
!! TTGTCTTATTGTCTATTCTT+TGG + chr4_3:69996865-69996884 Msa0659610:intron 25.0%
! TTGCCCTCAAAATAAAAAAA+TGG + chr4_3:69997051-69997070 Msa0659610:intron 25.0%
!!! GATGCCATTTTTTTATTTTG+AGG - chr4_3:69997058-69997077 None:intergenic 25.0%
! AAGGATCCAAAAATTTCAAA+TGG + chr4_3:69997149-69997168 Msa0659610:intron 25.0%
! ATCCAAAAATTTCAAATGGT+GGG + chr4_3:69997153-69997172 Msa0659610:intron 25.0%
! TAAAATATAAAGACACGTAG+AGG - chr4_3:69997346-69997365 None:intergenic 25.0%
! AATCAAATACACAATGGTAT+GGG - chr4_3:69997454-69997473 None:intergenic 25.0%
! AAATCAAATACACAATGGTA+TGG - chr4_3:69997455-69997474 None:intergenic 25.0%
! ACAACAAAATAATTAAGTGG+GGG + chr4_3:69997559-69997578 Msa0659610:intron 25.0%
! TGCATGTAGTATTAATTAGA+GGG - chr4_3:69997730-69997749 None:intergenic 25.0%
! ATGCATGTAGTATTAATTAG+AGG - chr4_3:69997731-69997750 None:intergenic 25.0%
! TTTAAATAATGATGCCTGAT+GGG + chr4_3:69998003-69998022 Msa0659610:intron 25.0%
! GGTTAATTATTCCTTAAACT+TGG + chr4_3:69998644-69998663 Msa0659610:intron 25.0%
!! AACTTGGTATTATGTTTTCT+CGG + chr4_3:69998660-69998679 Msa0659610:intron 25.0%
! TAATTTATATTGTTGCTCTG+AGG + chr4_3:69998725-69998744 Msa0659610:intron 25.0%
! TTTAATCTTAATTCCTAAGC+TGG - chr4_3:69999006-69999025 None:intergenic 25.0%
! TTAGCATCATTACAATATGA+AGG - chr4_3:69999125-69999144 None:intergenic 25.0%
! CTATTAGAATTCCCATTATA+TGG + chr4_3:69999642-69999661 Msa0659610:intron 25.0%
! TTAAAGGGAAATATGATCTA+AGG - chr4_3:69999692-69999711 None:intergenic 25.0%
! CCCTTTAATGATATTGAAAT+TGG + chr4_3:69999704-69999723 Msa0659610:intron 25.0%
! CCCAATTTCAATATCATTAA+AGG - chr4_3:69999708-69999727 None:intergenic 25.0%
! ATTTATTGTAAAGGTAAGGA+AGG - chr4_3:69999854-69999873 None:intergenic 25.0%
! AATATCAAGCAAAAACAAGA+AGG - chr4_3:70000214-70000233 None:intergenic 25.0%
! ACAGTGTTATGTATTATGTA+TGG + chr4_3:70000591-70000610 Msa0659610:intron 25.0%
!! TATCAACTTTTACTAGAAAG+AGG - chr4_3:70000752-70000771 None:intergenic 25.0%
! ACATCTTAGTAATCAGAAAT+TGG - chr4_3:70000780-70000799 None:intergenic 25.0%
! TTCATTTCCTTTCAAATTTG+AGG + chr4_3:70001072-70001091 Msa0659610:CDS 25.0%
!!! TTCCTCATTTTTATAGTATG+AGG + chr4_3:70001384-70001403 Msa0659610:intron 25.0%
! TGTTGTAATCTTTGTATTTC+AGG + chr4_3:70001580-70001599 Msa0659610:intron 25.0%
! TAATGTAATGAGCGTTTAAA+AGG - chr4_3:70001841-70001860 None:intergenic 25.0%
! TTAAACGCTCATTACATTAA+AGG + chr4_3:70001842-70001861 Msa0659610:three_prime_UTR 25.0%
! GAAAGGATATATACTGAAAT+AGG + chr4_3:70001864-70001883 Msa0659610:three_prime_UTR 25.0%
!!! ATTGAGTCTTTTTTTGTTTG+GGG + chr4_3:70001901-70001920 Msa0659610:three_prime_UTR 25.0%
! GCCAAAGTTATTAGTTAAAA+TGG + chr4_3:70001950-70001969 Msa0659610:three_prime_UTR 25.0%
!!! ACTTATATTTTTTTGGTCTC+TGG + chr4_3:70001975-70001994 Msa0659610:three_prime_UTR 25.0%
AAGAAGAAAAGAAAAGAGAG+AGG + chr4_3:69994399-69994418 Msa0659610:five_prime_UTR 30.0%
ATGTCCAAAAAGTTCGAAAA+TGG + chr4_3:69994582-69994601 Msa0659610:CDS 30.0%
! GATTCCATTTTCGAACTTTT+TGG - chr4_3:69994589-69994608 None:intergenic 30.0%
ATGAAATGAATTAGGTCTGA+TGG + chr4_3:69994772-69994791 Msa0659610:intron 30.0%
AATTCCAGATAACAAAGCAT+TGG - chr4_3:69994923-69994942 None:intergenic 30.0%
! GAATCCTTTATTTGTGACAT+CGG + chr4_3:69995130-69995149 Msa0659610:CDS 30.0%
TATTGATGCTCTTCAAAAGA+TGG + chr4_3:69995163-69995182 Msa0659610:CDS 30.0%
! CATTGTTATTATTGGGAACT+AGG + chr4_3:69995225-69995244 Msa0659610:intron 30.0%
!!! GTTCTAAGTAGTTTTTTGCT+TGG + chr4_3:69995277-69995296 Msa0659610:intron 30.0%
! AATAAGAATAGACTCTAGGA+AGG + chr4_3:69995740-69995759 Msa0659610:intron 30.0%
!!! TTTTTTCTGCGATATCTTGT+AGG + chr4_3:69995793-69995812 Msa0659610:intron 30.0%
TCAATAACATAAGTGACAAC+AGG - chr4_3:69995962-69995981 None:intergenic 30.0%
GAATGCCAAAGCTATAAATA+AGG + chr4_3:69996145-69996164 Msa0659610:intron 30.0%
AATGCCAAGGCTATAAATAA+GGG + chr4_3:69996209-69996228 Msa0659610:intron 30.0%
CTTGAGAAGAGTTTATAAAG+AGG - chr4_3:69996476-69996495 None:intergenic 30.0%
TGCTAACACAATAATAGGTA+GGG + chr4_3:69996686-69996705 Msa0659610:intron 30.0%
TAATTATCACCCTACCTATT+CGG - chr4_3:69996760-69996779 None:intergenic 30.0%
!!! GTCTATTCTTTGGTTTTTCT+TGG + chr4_3:69996875-69996894 Msa0659610:intron 30.0%
!!! TTTTCTTGGTTCTATATCCA+TGG + chr4_3:69996889-69996908 Msa0659610:intron 30.0%
!!! TTATTTTGAGGGCAATAACA+TGG - chr4_3:69997046-69997065 None:intergenic 30.0%
AAACAAAACTTGTACCTTTC+TGG + chr4_3:69997091-69997110 Msa0659610:intron 30.0%
! TGTACCTTTCTGGTATTTAA+AGG + chr4_3:69997101-69997120 Msa0659610:intron 30.0%
! TTAGCCTTTAAATACCAGAA+AGG - chr4_3:69997108-69997127 None:intergenic 30.0%
GTATTTAAAGGCTAAAGCTA+TGG + chr4_3:69997113-69997132 Msa0659610:intron 30.0%
!! AAATTTTTGGATCCTTCACT+TGG - chr4_3:69997145-69997164 None:intergenic 30.0%
GATCCAAAAATTTCAAATGG+TGG + chr4_3:69997152-69997171 Msa0659610:intron 30.0%
TCCAAAAATTTCAAATGGTG+GGG + chr4_3:69997154-69997173 Msa0659610:intron 30.0%
GTGAGAAATCAAATACACAA+TGG - chr4_3:69997460-69997479 None:intergenic 30.0%
! TATTAATTAGAGGGTACAGT+CGG - chr4_3:69997721-69997740 None:intergenic 30.0%
! AGAAATGTGTCATTCTAAGA+CGG + chr4_3:69997872-69997891 Msa0659610:intron 30.0%
AAACAGACATAGTAAGAAAC+AGG - chr4_3:69997982-69998001 None:intergenic 30.0%
CTTTAAATAATGATGCCTGA+TGG + chr4_3:69998002-69998021 Msa0659610:intron 30.0%
TTAAATAATGATGCCTGATG+GGG + chr4_3:69998004-69998023 Msa0659610:intron 30.0%
ATCTTTACAAGATGCAAACA+CGG - chr4_3:69998059-69998078 None:intergenic 30.0%
ACAGATTATAACTCGCTTAA+TGG - chr4_3:69998102-69998121 None:intergenic 30.0%
!!! CTGTTTTTTTTTTCTCCTCT+AGG + chr4_3:69998118-69998137 Msa0659610:intron 30.0%
! ACATTTGGTAATATCCAGTA+TGG - chr4_3:69998188-69998207 None:intergenic 30.0%
TATGGCATCATAAAGACATT+TGG - chr4_3:69998203-69998222 None:intergenic 30.0%
ACAAATTCAAATACAATCGG+TGG - chr4_3:69998358-69998377 None:intergenic 30.0%
ATTAACCTCAAGTGATTGAT+TGG - chr4_3:69998631-69998650 None:intergenic 30.0%
AAAATCACAGATCACATTTG+AGG - chr4_3:69998690-69998709 None:intergenic 30.0%
! ACTTTAGTGCTTAACTTGAA+AGG + chr4_3:69998817-69998836 Msa0659610:intron 30.0%
! AATGTGTCTAACAAAGCATT+TGG - chr4_3:69999182-69999201 None:intergenic 30.0%
GTACACAACAAAATACAATG+CGG - chr4_3:69999266-69999285 None:intergenic 30.0%
!! AGTTGAAAAGTTGATGTATG+TGG + chr4_3:69999318-69999337 Msa0659610:intron 30.0%
TTGCTTATATTTCATTTCGG+AGG + chr4_3:69999384-69999403 Msa0659610:intron 30.0%
!! TTCTGTAGCTTTATGTTTCT+AGG + chr4_3:69999469-69999488 Msa0659610:intron 30.0%
!! TCTGTAGCTTTATGTTTCTA+GGG + chr4_3:69999470-69999489 Msa0659610:intron 30.0%
!!! TTTTTTGCAGCTACATATAC+GGG - chr4_3:69999519-69999538 None:intergenic 30.0%
!!! CTTTTTTGCAGCTACATATA+CGG - chr4_3:69999520-69999539 None:intergenic 30.0%
AAGGGAAAAGATAAGAACAT+CGG - chr4_3:69999938-69999957 None:intergenic 30.0%
GACAAAAGAGAAAATTAGGA+AGG - chr4_3:70000004-70000023 None:intergenic 30.0%
CAACGACAAAAGAGAAAATT+AGG - chr4_3:70000008-70000027 None:intergenic 30.0%
TGAAAGATGTATAGAACGTT+AGG - chr4_3:70000038-70000057 None:intergenic 30.0%
AAGTAACATAAGTGGAAAGA+AGG + chr4_3:70000150-70000169 Msa0659610:intron 30.0%
! TTTTGCTTGATATTGAGAAC+TGG + chr4_3:70000220-70000239 Msa0659610:intron 30.0%
GCTTACTTTCCTAAATTTGT+TGG + chr4_3:70000390-70000409 Msa0659610:intron 30.0%
TAGAATCTGCCAACAAATTT+AGG - chr4_3:70000402-70000421 None:intergenic 30.0%
! TATAGATGCATTTTGTAGAC+TGG + chr4_3:70000548-70000567 Msa0659610:intron 30.0%
!! ATTTTGTAGACTGGTTAGAA+TGG + chr4_3:70000557-70000576 Msa0659610:intron 30.0%
!! TTTTGTAGACTGGTTAGAAT+GGG + chr4_3:70000558-70000577 Msa0659610:intron 30.0%
GTGCATTTGAAAATGTTCAA+CGG + chr4_3:70000613-70000632 Msa0659610:intron 30.0%
CAAATAATGAAGATGCAAAG+AGG - chr4_3:70000665-70000684 None:intergenic 30.0%
TTCATTATTTGCAATCGTTG+TGG + chr4_3:70000674-70000693 Msa0659610:intron 30.0%
TGATTACTAAGATGTACCTT+AGG + chr4_3:70000785-70000804 Msa0659610:intron 30.0%
ACTGCAATAAAACATTGTAG+AGG - chr4_3:70000978-70000997 None:intergenic 30.0%
TTGAGATCCTCAAATTTGAA+AGG - chr4_3:70001082-70001101 None:intergenic 30.0%
TTCAAATTTGAGGATCTCAA+TGG + chr4_3:70001082-70001101 Msa0659610:CDS 30.0%
!!! TTTATGTTGCTGTTTTTCGT+AGG + chr4_3:70001212-70001231 Msa0659610:intron 30.0%
AAAGACATGTAGTTCTCATA+AGG - chr4_3:70001347-70001366 None:intergenic 30.0%
GTCCTCATACTATAAAAATG+AGG - chr4_3:70001389-70001408 None:intergenic 30.0%
!!! GCTTTTTCATCTGATGATAT+TGG + chr4_3:70001512-70001531 Msa0659610:intron 30.0%
TCAGGCATTAAAGTTGTATT+TGG + chr4_3:70001598-70001617 Msa0659610:intron 30.0%
AACACTAGATTTCTGTATAC+TGG - chr4_3:70001669-70001688 None:intergenic 30.0%
!!! TTGAGTCTTTTTTTGTTTGG+GGG + chr4_3:70001902-70001921 Msa0659610:three_prime_UTR 30.0%
TTTAGAAGGATTAAGGAGAA+AGG - chr4_3:70002020-70002039 None:intergenic 30.0%
TATACATACTCTCGTTTAGA+AGG - chr4_3:70002034-70002053 None:intergenic 30.0%
!!! CATAGAAGGAGGTTTTTTGT+GGG - chr4_3:69994565-69994584 None:intergenic 35.0%
!!! ACATAGAAGGAGGTTTTTTG+TGG - chr4_3:69994566-69994585 None:intergenic 35.0%
! AACTTTTTGGACATAGAAGG+AGG - chr4_3:69994576-69994595 None:intergenic 35.0%
! TCGAACTTTTTGGACATAGA+AGG - chr4_3:69994579-69994598 None:intergenic 35.0%
AAAAAGAATTACTCGAGGGA+AGG - chr4_3:69994645-69994664 None:intergenic 35.0%
AAATGAATTAGGTCTGATGG+AGG + chr4_3:69994775-69994794 Msa0659610:intron 35.0%
AAAGCCCTAACTATATCTGA+GGG + chr4_3:69994829-69994848 Msa0659610:CDS 35.0%
! ATCTGGAATTATGACTGACA+AGG + chr4_3:69994933-69994952 Msa0659610:CDS 35.0%
GAGATGTAATGTGTAATGCA+AGG + chr4_3:69995017-69995036 Msa0659610:intron 35.0%
AGGATGTGTATCTTGTGTTT+AGG + chr4_3:69995037-69995056 Msa0659610:intron 35.0%
! TGGTGTCAAAAGTAATGACT+CGG + chr4_3:69995108-69995127 Msa0659610:CDS 35.0%
GTATCCGATGTCACAAATAA+AGG - chr4_3:69995137-69995156 None:intergenic 35.0%
ACTTTCCTGTATGTGTTCTT+GGG + chr4_3:69995369-69995388 Msa0659610:intron 35.0%
TCTGATATGACAGGACATAT+AGG + chr4_3:69995425-69995444 Msa0659610:intron 35.0%
! ATGCCTTTAGAAAGTATGCT+GGG + chr4_3:69995670-69995689 Msa0659610:intron 35.0%
! CGTTCCCTTATTTATAGCTT+TGG - chr4_3:69996153-69996172 None:intergenic 35.0%
! GTTAAGTTGTTAGAATGCCA+AGG + chr4_3:69996133-69996152 Msa0659610:intron 35.0%
GAATGCCAAGGCTATAAATA+AGG + chr4_3:69996208-69996227 Msa0659610:intron 35.0%
! CATTCCCTTATTTATAGCCT+TGG - chr4_3:69996216-69996235 None:intergenic 35.0%
TTCACTTACCTCCATTTGAA+AGG + chr4_3:69996420-69996439 Msa0659610:intron 35.0%
AGAATCCTATCTATCTGATG+TGG + chr4_3:69996494-69996513 Msa0659610:intron 35.0%
GAATCCTATCTATCTGATGT+GGG + chr4_3:69996495-69996514 Msa0659610:intron 35.0%
CATAATTCGTGACATGGTAT+CGG - chr4_3:69996551-69996570 None:intergenic 35.0%
GATACCATGTCACGAATTAT+GGG + chr4_3:69996550-69996569 Msa0659610:intron 35.0%
CTAACTCATCCTTACAAAAC+CGG + chr4_3:69996575-69996594 Msa0659610:intron 35.0%
CTTGAGAAGAGCTTATAAAG+AGG - chr4_3:69996622-69996641 None:intergenic 35.0%
AGAAACCTATCTATCTGATG+TGG + chr4_3:69996640-69996659 Msa0659610:intron 35.0%
GAAACCTATCTATCTGATGT+GGG + chr4_3:69996641-69996660 Msa0659610:intron 35.0%
TAATCCCACATCAGATAGAT+AGG - chr4_3:69996648-69996667 None:intergenic 35.0%
TTGGCTGCTAACACAATAAT+AGG + chr4_3:69996681-69996700 Msa0659610:intron 35.0%
CTGCTAACACAATAATAGGT+AGG + chr4_3:69996685-69996704 Msa0659610:intron 35.0%
ACAATAATAGGTAGGGTGAT+TGG + chr4_3:69996693-69996712 Msa0659610:intron 35.0%
GAAAGAAAGAATAGCCGAAT+AGG + chr4_3:69996743-69996762 Msa0659610:intron 35.0%
AAAGAATAGCCGAATAGGTA+GGG + chr4_3:69996748-69996767 Msa0659610:intron 35.0%
!! GATTTTGTTTGTGTGCAATG+TGG + chr4_3:69996919-69996938 Msa0659610:intron 35.0%
AATAACATGGAATGGGAAAC+AGG - chr4_3:69997033-69997052 None:intergenic 35.0%
CCAAAAATTTCAAATGGTGG+GGG + chr4_3:69997155-69997174 Msa0659610:intron 35.0%
TATCTTCCACCTTACGTTTA+TGG + chr4_3:69997765-69997784 Msa0659610:intron 35.0%
TAATGGTTGCCATAAACGTA+AGG - chr4_3:69997777-69997796 None:intergenic 35.0%
GACAGAGAAGAAACAGAATA+AGG - chr4_3:69997937-69997956 None:intergenic 35.0%
CATAGTAAGAAACAGGTCAA+AGG - chr4_3:69997975-69997994 None:intergenic 35.0%
TTTCTCCTCTAGGTAAATTC+AGG + chr4_3:69998128-69998147 Msa0659610:intron 35.0%
GTCTTTATGATGCCATATCA+AGG + chr4_3:69998206-69998225 Msa0659610:CDS 35.0%
TTATGATGCCATATCAAGGA+TGG + chr4_3:69998210-69998229 Msa0659610:CDS 35.0%
TACTGTAAGAACCCTCTATT+TGG + chr4_3:69998605-69998624 Msa0659610:intron 35.0%
! TGATTGATTGGCCAAATAGA+GGG - chr4_3:69998619-69998638 None:intergenic 35.0%
TCTCCATTCACATATCTACT+CGG - chr4_3:69998863-69998882 None:intergenic 35.0%
TCTCCATTCACATATCTACT+CGG - chr4_3:69998863-69998882 None:intergenic 35.0%
TCTCCATTCACATATCTACT+CGG - chr4_3:69998863-69998882 None:intergenic 35.0%
CATTGAGAGAGAGAATATTC+AGG + chr4_3:69999198-69999217 Msa0659610:intron 35.0%
!! CTTCGTATTTTCGCTGATTA+GGG - chr4_3:69999237-69999256 None:intergenic 35.0%
!! ACTTCGTATTTTCGCTGATT+AGG - chr4_3:69999238-69999257 None:intergenic 35.0%
TGCTTATATTTCATTCCGGA+GGG - chr4_3:69999290-69999309 None:intergenic 35.0%
TTGCTTATATTTCATTCCGG+AGG - chr4_3:69999291-69999310 None:intergenic 35.0%
AGTTGAAAGGTCAATGTATG+TGG - chr4_3:69999357-69999376 None:intergenic 35.0%
! TCACGTAAGATTCTTTTCAG+AGG + chr4_3:69999607-69999626 Msa0659610:intron 35.0%
AAGGTAAGGAAGGAAAATGA+GGG - chr4_3:69999844-69999863 None:intergenic 35.0%
AAAGGTAAGGAAGGAAAATG+AGG - chr4_3:69999845-69999864 None:intergenic 35.0%
GGGGATTTATTGTAAAGGTA+AGG - chr4_3:69999858-69999877 None:intergenic 35.0%
AGGAAGGGGATTTATTGTAA+AGG - chr4_3:69999863-69999882 None:intergenic 35.0%
TGGATCACGTGGAAAATTAA+GGG - chr4_3:69999956-69999975 None:intergenic 35.0%
TTGGATCACGTGGAAAATTA+AGG - chr4_3:69999957-69999976 None:intergenic 35.0%
ACATCTTTCATGCAGTTCAA+AGG + chr4_3:70000048-70000067 Msa0659610:intron 35.0%
GTCATTACCTAAGTGAGAAA+GGG - chr4_3:70000268-70000287 None:intergenic 35.0%
AGTCATTACCTAAGTGAGAA+AGG - chr4_3:70000269-70000288 None:intergenic 35.0%
TATCTAGTGTTGCACAATCT+GGG - chr4_3:70000297-70000316 None:intergenic 35.0%
GAAATTCTTACATCTTCCTG+TGG + chr4_3:70000354-70000373 Msa0659610:CDS 35.0%
ACTATTATTGTGTCTGCAGA+TGG + chr4_3:70000440-70000459 Msa0659610:intron 35.0%
! TGTTTTGCAGATAACTCATG+CGG + chr4_3:70000484-70000503 Msa0659610:CDS 35.0%
CTATGAGTATCAGAATCTTC+TGG - chr4_3:70000894-70000913 None:intergenic 35.0%
CAGAAGATTCTGATACTCAT+AGG + chr4_3:70000892-70000911 Msa0659610:CDS 35.0%
AAAGTCTGCATATCACTCTA+TGG + chr4_3:70001039-70001058 Msa0659610:CDS 35.0%
AAGTCTGCATATCACTCTAT+GGG + chr4_3:70001040-70001059 Msa0659610:CDS 35.0%
GATAGTTACCACAGTTGAAT+CGG - chr4_3:70001117-70001136 None:intergenic 35.0%
TAAAACAAACCACAATCGCA+GGG - chr4_3:70001304-70001323 None:intergenic 35.0%
ATAAAACAAACCACAATCGC+AGG - chr4_3:70001305-70001324 None:intergenic 35.0%
TTATAGTATGAGGACGATGA+AGG + chr4_3:70001394-70001413 Msa0659610:intron 35.0%
AGCAGAAACAAGATCATTGT+CGG - chr4_3:70001440-70001459 None:intergenic 35.0%
!! TCTGATGATATTGGCTTCTA+TGG + chr4_3:70001521-70001540 Msa0659610:intron 35.0%
! ATACTGGTTGTACTAGATTG+CGG - chr4_3:70001653-70001672 None:intergenic 35.0%
GTGTAGTAGTCTACCTAAAA+CGG + chr4_3:70001741-70001760 Msa0659610:CDS 35.0%
AAACCGCAAAACACATCATT+TGG - chr4_3:70001768-70001787 None:intergenic 35.0%
TTAAAAGGCAAAGGAGCTTA+GGG - chr4_3:70001826-70001845 None:intergenic 35.0%
TTTAAAAGGCAAAGGAGCTT+AGG - chr4_3:70001827-70001846 None:intergenic 35.0%
AATGAGCGTTTAAAAGGCAA+AGG - chr4_3:70001835-70001854 None:intergenic 35.0%
CGCTCATTACATTAAAGGAA+AGG + chr4_3:70001847-70001866 Msa0659610:three_prime_UTR 35.0%
GATTAAGGAGAAAGGATTAC+CGG - chr4_3:70002012-70002031 None:intergenic 35.0%
ACTCTCGTTTAGAAGGATTA+AGG - chr4_3:70002027-70002046 None:intergenic 35.0%
TACACAACAATGAGAAACGT+TGG + chr4_3:70002070-70002089 Msa0659610:three_prime_UTR 35.0%
ACACAACAATGAGAAACGTT+GGG + chr4_3:70002071-70002090 Msa0659610:three_prime_UTR 35.0%
AGAGAGGAGAAAGAGTTTGA+TGG + chr4_3:69994415-69994434 Msa0659610:five_prime_UTR 40.0%
AAAACATGAACGGTCTAACG+AGG + chr4_3:69994526-69994545 Msa0659610:exon 40.0%
AAAGGACGGTTAAGAAGCTA+CGG + chr4_3:69994800-69994819 Msa0659610:CDS 40.0%
CTCAGATATAGTTAGGGCTT+TGG - chr4_3:69994830-69994849 None:intergenic 40.0%
CAAAGCCCTAACTATATCTG+AGG + chr4_3:69994828-69994847 Msa0659610:CDS 40.0%
AAGCCCTAACTATATCTGAG+GGG + chr4_3:69994830-69994849 Msa0659610:CDS 40.0%
TGTCCCCTCAGATATAGTTA+GGG - chr4_3:69994836-69994855 None:intergenic 40.0%
ATGTCCCCTCAGATATAGTT+AGG - chr4_3:69994837-69994856 None:intergenic 40.0%
! GATGCCAATGCTTTGTTATC+TGG + chr4_3:69994916-69994935 Msa0659610:CDS 40.0%
ATGTGTGTTCATTGAGTGTG+TGG + chr4_3:69994983-69995002 Msa0659610:intron 40.0%
TTTGACACCATTGTCTGATC+CGG - chr4_3:69995098-69995117 None:intergenic 40.0%
ATTTGTGACATCGGATACGT+TGG + chr4_3:69995139-69995158 Msa0659610:CDS 40.0%
GCTCTTCAAAAGATGGTACA+AGG + chr4_3:69995170-69995189 Msa0659610:CDS 40.0%
GACTTTCCTGTATGTGTTCT+TGG + chr4_3:69995368-69995387 Msa0659610:intron 40.0%
ATCAACCCAAGAACACATAC+AGG - chr4_3:69995377-69995396 None:intergenic 40.0%
ATGACAGGACATATAGGATG+TGG + chr4_3:69995431-69995450 Msa0659610:intron 40.0%
TAACTCTATTGCTAGATCGC+AGG - chr4_3:69995601-69995620 None:intergenic 40.0%
! GATGCCTTTAGAAAGTATGC+TGG + chr4_3:69995669-69995688 Msa0659610:intron 40.0%
! TGCCTTTAGAAAGTATGCTG+GGG + chr4_3:69995671-69995690 Msa0659610:intron 40.0%
ACAAGATCTCTGTGTGGATT+GGG + chr4_3:69995697-69995716 Msa0659610:intron 40.0%
AACTTGGAACACACTAGAGA+TGG - chr4_3:69995825-69995844 None:intergenic 40.0%
!! GTGTTCCAAGTTGATCTTGT+CGG + chr4_3:69995833-69995852 Msa0659610:intron 40.0%
TTCTACCGACAAGATCAACT+TGG - chr4_3:69995841-69995860 None:intergenic 40.0%
TTTCAATGAGTTTCTCAGGC+AGG + chr4_3:69995936-69995955 Msa0659610:intron 40.0%
TACAGTGTTCCTGAGATCAT+TGG - chr4_3:69996008-69996027 None:intergenic 40.0%
GTAACTTGGGCCTATTCTAT+TGG - chr4_3:69996047-69996066 None:intergenic 40.0%
ATAGGCCCAAGTTACATTAG+AGG + chr4_3:69996052-69996071 Msa0659610:intron 40.0%
CCTCACCTCTAATGTAACTT+GGG - chr4_3:69996060-69996079 None:intergenic 40.0%
ACCTCACCTCTAATGTAACT+TGG - chr4_3:69996061-69996080 None:intergenic 40.0%
! GTGAGTCATCATGTTCTAGA+AGG + chr4_3:69996079-69996098 Msa0659610:intron 40.0%
GGATCTAGAGAGATCCATTA+TGG + chr4_3:69996100-69996119 Msa0659610:intron 40.0%
TAACCAATGACTCGCCATAA+TGG - chr4_3:69996117-69996136 None:intergenic 40.0%
TTCTTTCAGTGTCCTATCTC+AGG + chr4_3:69996379-69996398 Msa0659610:intron 40.0%
TCTTTCAGTGTCCTATCTCA+GGG + chr4_3:69996380-69996399 Msa0659610:intron 40.0%
! CTCCATTTGAAAGGCATAAC+CGG + chr4_3:69996429-69996448 Msa0659610:intron 40.0%
! AAAGGCATAACCGGCTTATA+AGG + chr4_3:69996438-69996457 Msa0659610:intron 40.0%
TAGTCCCACATCAGATAGAT+AGG - chr4_3:69996502-69996521 None:intergenic 40.0%
ATCCACGATAGATCTAGCAT+AGG + chr4_3:69996523-69996542 Msa0659610:intron 40.0%
CGATACCATGTCACGAATTA+TGG + chr4_3:69996549-69996568 Msa0659610:intron 40.0%
!! CGGTTTTGTAAGGATGAGTT+AGG - chr4_3:69996577-69996596 None:intergenic 40.0%
!! CCTTATAAGCCGGTTTTGTA+AGG - chr4_3:69996587-69996606 None:intergenic 40.0%
! CCTTACAAAACCGGCTTATA+AGG + chr4_3:69996584-69996603 Msa0659610:intron 40.0%
GAGAAGAGCTTATAAAGAGG+AGG - chr4_3:69996619-69996638 None:intergenic 40.0%
GAAAGAATAGCCGAATAGGT+AGG + chr4_3:69996747-69996766 Msa0659610:intron 40.0%
TGTCTTCGCTCTTTGTTACA+TGG + chr4_3:69996950-69996969 Msa0659610:intron 40.0%
GTCTTCGCTCTTTGTTACAT+GGG + chr4_3:69996951-69996970 Msa0659610:intron 40.0%
ACTTTATGAGATGTGCTGTC+TGG + chr4_3:69996974-69996993 Msa0659610:intron 40.0%
CTTTATGAGATGTGCTGTCT+GGG + chr4_3:69996975-69996994 Msa0659610:intron 40.0%
TGAGGGCAATAACATGGAAT+GGG - chr4_3:69997040-69997059 None:intergenic 40.0%
TTGAGGGCAATAACATGGAA+TGG - chr4_3:69997041-69997060 None:intergenic 40.0%
!! CCCCCACCATTTGAAATTTT+TGG - chr4_3:69997158-69997177 None:intergenic 40.0%
ATCTGTGTACAATGCATTGG+GGG - chr4_3:69997591-69997610 None:intergenic 40.0%
GATCTGTGTACAATGCATTG+GGG - chr4_3:69997592-69997611 None:intergenic 40.0%
GGATCTGTGTACAATGCATT+GGG - chr4_3:69997593-69997612 None:intergenic 40.0%
!! AATGTGTCATTCTAAGACGG+AGG + chr4_3:69997875-69997894 Msa0659610:intron 40.0%
!! ATGTGTCATTCTAAGACGGA+GGG + chr4_3:69997876-69997895 Msa0659610:intron 40.0%
! ACTTCACCATTTTCCACAAC+AGG - chr4_3:69998160-69998179 None:intergenic 40.0%
! GTGATTGATTGGCCAAATAG+AGG - chr4_3:69998620-69998639 None:intergenic 40.0%
TTTGGCCAATCAATCACTTG+AGG + chr4_3:69998623-69998642 Msa0659610:intron 40.0%
!! ATCTAAAATGGACTGGGCAA+CGG + chr4_3:69998765-69998784 Msa0659610:intron 40.0%
AAGCCGAGTAGATATGTGAA+TGG + chr4_3:69998857-69998876 Msa0659610:intron 40.0%
AAGCCGAGTAGATATGTGAA+TGG + chr4_3:69998857-69998876 Msa0659610:intron 40.0%
AAGCCGAGTAGATATGTGAA+TGG + chr4_3:69998857-69998876 Msa0659610:intron 40.0%
CATTTAAACTCTGCCAGCTT+AGG + chr4_3:69998990-69999009 Msa0659610:intron 40.0%
! ATTTGGAGCTGACAAAGATG+GGG - chr4_3:69999165-69999184 None:intergenic 40.0%
! CATTTGGAGCTGACAAAGAT+GGG - chr4_3:69999166-69999185 None:intergenic 40.0%
!! ATTTTGTTGTGTACTCCCTC+CGG + chr4_3:69999272-69999291 Msa0659610:intron 40.0%
CTGACAGTATAAGCATCATG+TGG - chr4_3:69999430-69999449 None:intergenic 40.0%
TGTAGCTGCAAAAAAGATGC+AGG + chr4_3:69999524-69999543 Msa0659610:CDS 40.0%
! GCTGTTATTGTGTCATTGTC+AGG + chr4_3:69999564-69999583 Msa0659610:CDS 40.0%
ATTGTCAGGAACCAAGATTC+AGG + chr4_3:69999578-69999597 Msa0659610:CDS 40.0%
TTGTCAGGAACCAAGATTCA+GGG + chr4_3:69999579-69999598 Msa0659610:CDS 40.0%
TAAAGAAAGAGAGAAGGGCT+AGG - chr4_3:69999819-69999838 None:intergenic 40.0%
GGGGATAAAGAAAGAGAGAA+GGG - chr4_3:69999824-69999843 None:intergenic 40.0%
AGGGGATAAAGAAAGAGAGA+AGG - chr4_3:69999825-69999844 None:intergenic 40.0%
AGGTAAGGAAGGAAAATGAG+GGG - chr4_3:69999843-69999862 None:intergenic 40.0%
AATGTAACCTCCAATCCACT+TGG - chr4_3:69999904-69999923 None:intergenic 40.0%
! ATAAGAACATCGGCGTTGAA+CGG - chr4_3:69999928-69999947 None:intergenic 40.0%
! TTTTCCACTAGAGTCAACTC+GGG - chr4_3:70000109-70000128 None:intergenic 40.0%
! CTTTTCCACTAGAGTCAACT+CGG - chr4_3:70000110-70000129 None:intergenic 40.0%
GATTCTTCCCTTTCTCACTT+AGG + chr4_3:70000258-70000277 Msa0659610:intron 40.0%
GTATCTAGTGTTGCACAATC+TGG - chr4_3:70000298-70000317 None:intergenic 40.0%
CACTACATATGATGCACGAT+GGG + chr4_3:70000332-70000351 Msa0659610:CDS 40.0%
CTCAAGCATGAAGTTTACCA+GGG - chr4_3:70000516-70000535 None:intergenic 40.0%
TCTCAAGCATGAAGTTTACC+AGG - chr4_3:70000517-70000536 None:intergenic 40.0%
ATGCAAAGAGGAATGTAGTG+AGG - chr4_3:70000653-70000672 None:intergenic 40.0%
TGAGTATCAGAATCTTCTGG+TGG - chr4_3:70000891-70000910 None:intergenic 40.0%
! GCATATCACTCTATGGGTTT+TGG + chr4_3:70001046-70001065 Msa0659610:CDS 40.0%
TTCAACTGTGGTAACTATCC+CGG + chr4_3:70001118-70001137 Msa0659610:intron 40.0%
GAAGGCGATAGAATTGTTCT+TGG + chr4_3:70001412-70001431 Msa0659610:CDS 40.0%
GCTGTTGTTGTAACAAGCAT+TGG + chr4_3:70001719-70001738 Msa0659610:CDS 40.0%
! CACATCATTTGGACCGTTTT+AGG - chr4_3:70001757-70001776 None:intergenic 40.0%
! GGTCCAAATGATGTGTTTTG+CGG + chr4_3:70001762-70001781 Msa0659610:exon 40.0%
! GATGTGTTTTGCGGTTTAAG+CGG + chr4_3:70001771-70001790 Msa0659610:exon 40.0%
! ATGTGTTTTGCGGTTTAAGC+GGG + chr4_3:70001772-70001791 Msa0659610:exon 40.0%
CACAACAATGAGAAACGTTG+GGG + chr4_3:70002072-70002091 Msa0659610:three_prime_UTR 40.0%
GAGGAGAAAGAGTTTGATGG+TGG + chr4_3:69994418-69994437 Msa0659610:five_prime_UTR 45.0%
!! GAGAAAGAGTTTGATGGTGG+TGG + chr4_3:69994421-69994440 Msa0659610:five_prime_UTR 45.0%
ACAGACAGAGAAAGAGACAG+AGG - chr4_3:69994497-69994516 None:intergenic 45.0%
AAGAATTACTCGAGGGAAGG+AGG - chr4_3:69994642-69994661 None:intergenic 45.0%
TTAGGTCTGATGGAGGTGAA+AGG + chr4_3:69994782-69994801 Msa0659610:intron 45.0%
TGCTACTAGAGTTATTGCCG+AGG + chr4_3:69995064-69995083 Msa0659610:CDS 45.0%
GCTACTAGAGTTATTGCCGA+GGG + chr4_3:69995065-69995084 Msa0659610:CDS 45.0%
! GCCTTTAGAAAGTATGCTGG+GGG + chr4_3:69995672-69995691 Msa0659610:intron 45.0%
ACCCCCAGCATACTTTCTAA+AGG - chr4_3:69995676-69995695 None:intergenic 45.0%
GACAAGATCTCTGTGTGGAT+TGG + chr4_3:69995696-69995715 Msa0659610:intron 45.0%
GAGCTTGATCCAATGATCTC+AGG + chr4_3:69995996-69996015 Msa0659610:intron 45.0%
CCCAAGTTACATTAGAGGTG+AGG + chr4_3:69996057-69996076 Msa0659610:intron 45.0%
GATCCATTATGGCGAGTCAT+TGG + chr4_3:69996111-69996130 Msa0659610:intron 45.0%
CGGTTATGCCTTTCAAATGG+AGG - chr4_3:69996431-69996450 None:intergenic 45.0%
AGCCGGTTATGCCTTTCAAA+TGG - chr4_3:69996434-69996453 None:intergenic 45.0%
! CATAACCGGCTTATAAGGTG+AGG + chr4_3:69996443-69996462 Msa0659610:intron 45.0%
AGCCTATGCTAGATCTATCG+TGG - chr4_3:69996528-69996547 None:intergenic 45.0%
AGGTCCCATAATTCGTGACA+TGG - chr4_3:69996557-69996576 None:intergenic 45.0%
! CAAAACCGGCTTATAAGGTG+TGG + chr4_3:69996589-69996608 Msa0659610:intron 45.0%
GGATTAAATCCTCCGAGTGT+TGG + chr4_3:69996662-69996681 Msa0659610:intron 45.0%
TTGTGTTAGCAGCCAACACT+CGG - chr4_3:69996677-69996696 None:intergenic 45.0%
AGCTACTAGTTCAAGCCATG+AGG - chr4_3:69996800-69996819 None:intergenic 45.0%
CTATGGCTTACTCCAAGTGA+AGG + chr4_3:69997130-69997149 Msa0659610:intron 45.0%
CGGATCTGTGTACAATGCAT+TGG - chr4_3:69997594-69997613 None:intergenic 45.0%
! AATGTGTCACTCGTTGAAGG+TGG - chr4_3:69997633-69997652 None:intergenic 45.0%
! GCAAATGTGTCACTCGTTGA+AGG - chr4_3:69997636-69997655 None:intergenic 45.0%
TGGTTGCCATAAACGTAAGG+TGG - chr4_3:69997774-69997793 None:intergenic 45.0%
! AGAAACAGGTCAAAGGTGCA+AGG - chr4_3:69997968-69997987 None:intergenic 45.0%
AGGTGCCTGAATTTACCTAG+AGG - chr4_3:69998136-69998155 None:intergenic 45.0%
TGGTGAAGTCATTGCCATAC+TGG + chr4_3:69998171-69998190 Msa0659610:CDS 45.0%
TGCCATATCAAGGATGGAGA+AGG + chr4_3:69998216-69998235 Msa0659610:CDS 45.0%
AGCCTTCTCCATCCTTGATA+TGG - chr4_3:69998221-69998240 None:intergenic 45.0%
TGTTGGATTCTGCTGCAGTT+TGG + chr4_3:69998486-69998505 Msa0659610:intron 45.0%
!! TCTAAAATGGACTGGGCAAC+GGG + chr4_3:69998766-69998785 Msa0659610:intron 45.0%
! GCATTTGGAGCTGACAAAGA+TGG - chr4_3:69999167-69999186 None:intergenic 45.0%
CTGATTAGGGTTGACAAGGA+AGG - chr4_3:69999224-69999243 None:intergenic 45.0%
! TTCGCTGATTAGGGTTGACA+AGG - chr4_3:69999228-69999247 None:intergenic 45.0%
!! TAGAGCACCGCTGAATTTCA+AGG + chr4_3:69999765-69999784 Msa0659610:intron 45.0%
!! AGAGCACCGCTGAATTTCAA+GGG + chr4_3:69999766-69999785 Msa0659610:intron 45.0%
AGTAGGTATTAGAGACCTGC+AGG - chr4_3:69999792-69999811 None:intergenic 45.0%
GAGAAGGGCTAGGATTAAGT+AGG - chr4_3:69999809-69999828 None:intergenic 45.0%
ATGCGAGGAAAATCAGGAAG+GGG - chr4_3:69999877-69999896 None:intergenic 45.0%
GATGCGAGGAAAATCAGGAA+GGG - chr4_3:69999878-69999897 None:intergenic 45.0%
AGATGCGAGGAAAATCAGGA+AGG - chr4_3:69999879-69999898 None:intergenic 45.0%
! ATAGAGTGCCAGCATTGAGT+TGG - chr4_3:69999976-69999995 None:intergenic 45.0%
TTTCCACTAGAGTCAACTCG+GGG - chr4_3:70000108-70000127 None:intergenic 45.0%
! CGAGTTGACTCTAGTGGAAA+AGG + chr4_3:70000108-70000127 Msa0659610:CDS 45.0%
GCACTACATATGATGCACGA+TGG + chr4_3:70000331-70000350 Msa0659610:CDS 45.0%
!! CTCTGGAGCTGTTAATGATG+TGG + chr4_3:70000818-70000837 Msa0659610:CDS 45.0%
TCTGATACTCATAGGTACGC+TGG + chr4_3:70000900-70000919 Msa0659610:intron 45.0%
TCAACTGTGGTAACTATCCC+GGG + chr4_3:70001119-70001138 Msa0659610:intron 45.0%
TAACTATCCCGGGGGAAAAT+TGG + chr4_3:70001129-70001148 Msa0659610:intron 45.0%
AACTATCCCGGGGGAAAATT+GGG + chr4_3:70001130-70001149 Msa0659610:intron 45.0%
!! GTACTAGATTGCGGTGTTGT+TGG - chr4_3:70001644-70001663 None:intergenic 45.0%
AACAGCACCTGCAAGAATAC+TGG - chr4_3:70001705-70001724 None:intergenic 45.0%
! TGTGTTTTGCGGTTTAAGCG+GGG + chr4_3:70001773-70001792 Msa0659610:three_prime_UTR 45.0%
TAAGGAGAAAGGATTACCGG+CGG - chr4_3:70002009-70002028 None:intergenic 45.0%
!!! TTTTATGTATATTAAAAATT+AGG - chr4_3:69997520-69997539 None:intergenic 5.0%
!!! ATTTTTTTTTATATCTAAAA+TGG + chr4_3:69998753-69998772 Msa0659610:intron 5.0%
!! AAGAGTTTGATGGTGGTGGC+TGG + chr4_3:69994425-69994444 Msa0659610:five_prime_UTR 50.0%
ACATGAACGGTCTAACGAGG+AGG + chr4_3:69994529-69994548 Msa0659610:exon 50.0%
GTCTAACGAGGAGGAACAGT+GGG + chr4_3:69994538-69994557 Msa0659610:CDS 50.0%
!! GGAGAAGAAGGTTTGCTGGA+AGG - chr4_3:69994621-69994640 None:intergenic 50.0%
AGGAGGAGAAGAAGGTTTGC+TGG - chr4_3:69994625-69994644 None:intergenic 50.0%
GTCTGATGGAGGTGAAAGGA+CGG + chr4_3:69994786-69994805 Msa0659610:CDS 50.0%
TTCAGATGCATGTCGCCGAA+TGG + chr4_3:69994861-69994880 Msa0659610:CDS 50.0%
TTTGCGACCGGATCAGACAA+TGG + chr4_3:69995088-69995107 Msa0659610:CDS 50.0%
!! CTCTGTGTGGATTGGGTTTC+TGG + chr4_3:69995704-69995723 Msa0659610:intron 50.0%
TGGAACACACTAGAGATGGC+TGG - chr4_3:69995821-69995840 None:intergenic 50.0%
ACACACACACACCCTGAGAT+AGG - chr4_3:69996394-69996413 None:intergenic 50.0%
GCACTCCTCACCTTATAAGC+CGG - chr4_3:69996451-69996470 None:intergenic 50.0%
GCACTCCACACCTTATAAGC+CGG - chr4_3:69996597-69996616 None:intergenic 50.0%
!! AGTGTCGTTTCGTCACCTCA+TGG + chr4_3:69996782-69996801 Msa0659610:intron 50.0%
TGTCACTCGTTGAAGGTGGA+GGG - chr4_3:69997629-69997648 None:intergenic 50.0%
ATGCCTGATGGGGCAAGAAT+TGG + chr4_3:69998014-69998033 Msa0659610:intron 50.0%
TGCCTGATGGGGCAAGAATT+GGG + chr4_3:69998015-69998034 Msa0659610:intron 50.0%
TTCCCAATTCTTGCCCCATC+AGG - chr4_3:69998020-69998039 None:intergenic 50.0%
CACCTGCCTGTTGTGGAAAA+TGG + chr4_3:69998151-69998170 Msa0659610:CDS 50.0%
! CACCATTTTCCACAACAGGC+AGG - chr4_3:69998156-69998175 None:intergenic 50.0%
GCAATTGCAGCTGCAGTTGA+AGG + chr4_3:69998256-69998275 Msa0659610:CDS 50.0%
CGTGAGTATGCCCTGAATCT+TGG - chr4_3:69999592-69999611 None:intergenic 50.0%
TGCAGGCCCTTGAAATTCAG+CGG - chr4_3:69999775-69999794 None:intergenic 50.0%
!! CAGCATTGAGTTGGATCACG+TGG - chr4_3:69999967-69999986 None:intergenic 50.0%
CACGTGATCCAACTCAATGC+TGG + chr4_3:69999965-69999984 Msa0659610:intron 50.0%
TTCCACTAGAGTCAACTCGG+GGG - chr4_3:70000107-70000126 None:intergenic 50.0%
AACTCATGCGGCAATTTCCC+TGG + chr4_3:70000496-70000515 Msa0659610:CDS 50.0%
CCAGAGCTACTCTCAACCTA+AGG - chr4_3:70000804-70000823 None:intergenic 50.0%
!! CCTTAGGTTGAGAGTAGCTC+TGG + chr4_3:70000801-70000820 Msa0659610:intron 50.0%
AGTTTCAGCGCTCATGACCT+CGG + chr4_3:70001000-70001019 Msa0659610:CDS 50.0%
TGTTGTATCTGCTCCATCCG+AGG - chr4_3:70001020-70001039 None:intergenic 50.0%
CAACTGTGGTAACTATCCCG+GGG + chr4_3:70001120-70001139 Msa0659610:intron 50.0%
AACTGTGGTAACTATCCCGG+GGG + chr4_3:70001121-70001140 Msa0659610:intron 50.0%
GTCAGCTATGCTAGAACTGC+AGG + chr4_3:70001460-70001479 Msa0659610:CDS 50.0%
TGCTAGAACTGCAGGAGTGA+AGG + chr4_3:70001468-70001487 Msa0659610:CDS 50.0%
CACCTGCAAGAATACTGGAG+CGG - chr4_3:70001700-70001719 None:intergenic 50.0%
!! AGTTTGATGGTGGTGGCTGG+TGG + chr4_3:69994428-69994447 Msa0659610:five_prime_UTR 55.0%
GGTCTAACGAGGAGGAACAG+TGG + chr4_3:69994537-69994556 Msa0659610:CDS 55.0%
! GTTTGCTGGAAGGTTCGCTG+TGG - chr4_3:69994611-69994630 None:intergenic 55.0%
TCGAGGGAAGGAGGAGAAGA+AGG - chr4_3:69994633-69994652 None:intergenic 55.0%
AGATGCATGTCGCCGAATGG+CGG + chr4_3:69994864-69994883 Msa0659610:CDS 55.0%
TATTGCCGAGGGTTTGCGAC+CGG + chr4_3:69995076-69995095 Msa0659610:CDS 55.0%
TTGCTAGATCGCAGGCTGTG+TGG - chr4_3:69995593-69995612 None:intergenic 55.0%
GGGGTGACAAGATCTCTGTG+TGG + chr4_3:69995691-69995710 Msa0659610:intron 55.0%
TGTTAGCAGCCAACACTCGG+AGG - chr4_3:69996674-69996693 None:intergenic 55.0%
TGAAGGTGGAGGGAGTAAGC+AGG - chr4_3:69997619-69997638 None:intergenic 55.0%
! GTGTCACTCGTTGAAGGTGG+AGG - chr4_3:69997630-69997649 None:intergenic 55.0%
ATTCAGGCACCTGCCTGTTG+TGG + chr4_3:69998144-69998163 Msa0659610:CDS 55.0%
ATGGAGAAGGCTGCTGAGCA+GGG + chr4_3:69998229-69998248 Msa0659610:CDS 55.0%
GCTGAATTTCAAGGGCCTGC+AGG + chr4_3:69999774-69999793 Msa0659610:intron 55.0%
GGCGAGATGCGAGGAAAATC+AGG - chr4_3:69999883-69999902 None:intergenic 55.0%
TTTCCTCGCATCTCGCCAAG+TGG + chr4_3:69999886-69999905 Msa0659610:intron 55.0%
AATCCACTTGGCGAGATGCG+AGG - chr4_3:69999892-69999911 None:intergenic 55.0%
TCGCATCTCGCCAAGTGGAT+TGG + chr4_3:69999891-69999910 Msa0659610:intron 55.0%
!! CATCTCGCCAAGTGGATTGG+AGG + chr4_3:69999894-69999913 Msa0659610:intron 55.0%
AGCTCACGTCTGTCTACCAC+AGG - chr4_3:70000373-70000392 None:intergenic 55.0%
TATCCCGGGGGAAAATTGGG+AGG + chr4_3:70001133-70001152 Msa0659610:intron 55.0%
! AGTCCTCCCAATTTTCCCCC+GGG - chr4_3:70001139-70001158 None:intergenic 55.0%
! CAGTCCTCCCAATTTTCCCC+CGG - chr4_3:70001140-70001159 None:intergenic 55.0%
GGGGGAAAATTGGGAGGACT+GGG + chr4_3:70001139-70001158 Msa0659610:intron 55.0%
CTCCGCTCCAGTATTCTTGC+AGG + chr4_3:70001695-70001714 Msa0659610:CDS 55.0%
!! TTGATGGTGGTGGCTGGTGG+AGG + chr4_3:69994431-69994450 Msa0659610:five_prime_UTR 60.0%
CTGATCCGGTCGCAAACCCT+CGG - chr4_3:69995084-69995103 None:intergenic 60.0%
GTGGAGGGAGTAAGCAGGCA+CGG - chr4_3:69997614-69997633 None:intergenic 60.0%
GATGGAGAAGGCTGCTGAGC+AGG + chr4_3:69998228-69998247 Msa0659610:CDS 60.0%
TGGAGAAGGCTGCTGAGCAG+GGG + chr4_3:69998230-69998249 Msa0659610:CDS 60.0%
! TTGAAGGCGCAGAACGCCAG+CGG + chr4_3:69998272-69998291 Msa0659610:CDS 60.0%
CAGATGCATTGCTACCCCGC+TGG - chr4_3:69998291-69998310 None:intergenic 60.0%
CAGCGGGGTAGCAATGCATC+TGG + chr4_3:69998289-69998308 Msa0659610:CDS 60.0%
! CTCCCCCGAGTTGACTCTAG+TGG + chr4_3:70000102-70000121 Msa0659610:CDS 60.0%
TCAGCGCTCATGACCTCGGA+TGG + chr4_3:70001004-70001023 Msa0659610:CDS 60.0%
!! CGCGTGCACCGATTCAACTG+TGG + chr4_3:70001106-70001125 Msa0659610:CDS 60.0%
CGGGGGAAAATTGGGAGGAC+TGG + chr4_3:70001138-70001157 Msa0659610:intron 60.0%
CAGAGAACGCCCTGCGATTG+TGG + chr4_3:70001292-70001311 Msa0659610:CDS 60.0%
GGAGAAAGGATTACCGGCGG+CGG - chr4_3:70002006-70002025 None:intergenic 60.0%
!! ATGGTGGTGGCTGGTGGAGG+AGG + chr4_3:69994434-69994453 Msa0659610:five_prime_UTR 65.0%
! TGAAGGCGCAGAACGCCAGC+GGG + chr4_3:69998273-69998292 Msa0659610:CDS 65.0%
CATGTCGCCGAATGGCGGCG+CGG + chr4_3:69994869-69994888 Msa0659610:CDS 70.0%
! GAAGGCGCAGAACGCCAGCG+GGG + chr4_3:69998274-69998293 Msa0659610:CDS 70.0%
GTCTCTGGCGTAACCGCCGC+CGG + chr4_3:70001990-70002009 Msa0659610:three_prime_UTR 70.0%
CGACACGCCGCGCCGCCATT+CGG - chr4_3:69994879-69994898 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 69994384 70002193 69994384 ID=Msa0659610;Name=Msa0659610
chr4_3 mRNA 69994384 70002193 69994384 ID=Msa0659610-mRNA-1;Parent=Msa0659610;Name=Msa0659610-mRNA-1;_AED=0.10;_eAED=0.11;_QI=147|0.91|0.92|1|0.91|0.84|13|421|534
chr4_3 exon 69994384 69994652 69994384 ID=Msa0659610-mRNA-1:exon:20685;Parent=Msa0659610-mRNA-1
chr4_3 exon 69994786 69994954 69994786 ID=Msa0659610-mRNA-1:exon:20686;Parent=Msa0659610-mRNA-1
chr4_3 exon 69995059 69995191 69995059 ID=Msa0659610-mRNA-1:exon:20687;Parent=Msa0659610-mRNA-1
chr4_3 exon 69998140 69998375 69998140 ID=Msa0659610-mRNA-1:exon:20688;Parent=Msa0659610-mRNA-1
chr4_3 exon 69999477 69999610 69999477 ID=Msa0659610-mRNA-1:exon:20689;Parent=Msa0659610-mRNA-1
chr4_3 exon 70000063 70000129 70000063 ID=Msa0659610-mRNA-1:exon:20690;Parent=Msa0659610-mRNA-1
chr4_3 exon 70000280 70000385 70000280 ID=Msa0659610-mRNA-1:exon:20691;Parent=Msa0659610-mRNA-1
chr4_3 exon 70000459 70000517 70000459 ID=Msa0659610-mRNA-1:exon:20692;Parent=Msa0659610-mRNA-1
chr4_3 exon 70000807 70000913 70000807 ID=Msa0659610-mRNA-1:exon:20693;Parent=Msa0659610-mRNA-1
chr4_3 exon 70000997 70001127 70000997 ID=Msa0659610-mRNA-1:exon:20694;Parent=Msa0659610-mRNA-1
chr4_3 exon 70001234 70001313 70001234 ID=Msa0659610-mRNA-1:exon:20695;Parent=Msa0659610-mRNA-1
chr4_3 exon 70001400 70001489 70001400 ID=Msa0659610-mRNA-1:exon:20696;Parent=Msa0659610-mRNA-1
chr4_3 exon 70001602 70002193 70001602 ID=Msa0659610-mRNA-1:exon:20697;Parent=Msa0659610-mRNA-1
chr4_3 five_prime_UTR 69994384 69994530 69994384 ID=Msa0659610-mRNA-1:five_prime_utr;Parent=Msa0659610-mRNA-1
chr4_3 CDS 69994531 69994652 69994531 ID=Msa0659610-mRNA-1:cds;Parent=Msa0659610-mRNA-1
chr4_3 CDS 69994786 69994954 69994786 ID=Msa0659610-mRNA-1:cds;Parent=Msa0659610-mRNA-1
chr4_3 CDS 69995059 69995191 69995059 ID=Msa0659610-mRNA-1:cds;Parent=Msa0659610-mRNA-1
chr4_3 CDS 69998140 69998375 69998140 ID=Msa0659610-mRNA-1:cds;Parent=Msa0659610-mRNA-1
chr4_3 CDS 69999477 69999610 69999477 ID=Msa0659610-mRNA-1:cds;Parent=Msa0659610-mRNA-1
chr4_3 CDS 70000063 70000129 70000063 ID=Msa0659610-mRNA-1:cds;Parent=Msa0659610-mRNA-1
chr4_3 CDS 70000280 70000385 70000280 ID=Msa0659610-mRNA-1:cds;Parent=Msa0659610-mRNA-1
chr4_3 CDS 70000459 70000517 70000459 ID=Msa0659610-mRNA-1:cds;Parent=Msa0659610-mRNA-1
chr4_3 CDS 70000807 70000913 70000807 ID=Msa0659610-mRNA-1:cds;Parent=Msa0659610-mRNA-1
chr4_3 CDS 70000997 70001127 70000997 ID=Msa0659610-mRNA-1:cds;Parent=Msa0659610-mRNA-1
chr4_3 CDS 70001234 70001313 70001234 ID=Msa0659610-mRNA-1:cds;Parent=Msa0659610-mRNA-1
chr4_3 CDS 70001400 70001489 70001400 ID=Msa0659610-mRNA-1:cds;Parent=Msa0659610-mRNA-1
chr4_3 CDS 70001602 70001772 70001602 ID=Msa0659610-mRNA-1:cds;Parent=Msa0659610-mRNA-1
chr4_3 three_prime_UTR 70001773 70002193 70001773 ID=Msa0659610-mRNA-1:three_prime_utr;Parent=Msa0659610-mRNA-1
Gene Sequence

>Msa0659610

ATGAACGGTCTAACGAGGAGGAACAGTGGGACCCACAAAAAACCTCCTTCTATGTCCAAAAAGTTCGAAAATGGAATCCACAGCGAACCTTCCAGCAAACCTTCTTCTCCTCCTTCCCTCGAGTCTGATGGAGGTGAAAGGACGGTTAAGAAGCTACGGTTATCCAAAGCCCTAACTATATCTGAGGGGACATCAGTTTCAGATGCATGTCGCCGAATGGCGGCGCGGCGTGTCGATGCTGTTTTGCTGACTGATGCCAATGCTTTGTTATCTGGAATTATGACTGACAAGGATATTGCTACTAGAGTTATTGCCGAGGGTTTGCGACCGGATCAGACAATGGTGTCAAAAGTAATGACTCGGAATCCTTTATTTGTGACATCGGATACGTTGGCTATTGATGCTCTTCAAAAGATGGTACAAGGTAAATTCAGGCACCTGCCTGTTGTGGAAAATGGTGAAGTCATTGCCATACTGGATATTACCAAATGTCTTTATGATGCCATATCAAGGATGGAGAAGGCTGCTGAGCAGGGGAGTGCAATTGCAGCTGCAGTTGAAGGCGCAGAACGCCAGCGGGGTAGCAATGCATCTGGTCAGTTAACAATTATATTTTCATACAAGTATTACAGTTTTAAACCACCGATTGTATTTGAATTTCTTTATGTTTCTAGGGTTGCTATTGCATCAGCAGCAGATCCCGTATATGTAGCTGCAAAAAAGATGCAGGAGTTGCGTGTTAATTCAGCTGTTATTGTGTCATTGTCAGGAACCAAGATTCAGGGCATACTCACTTCAAAGGACATACTTATGCGTGTTGTAGCTCAAAATCTCTCCCCCGAGTTGACTCTAGTGGAAAAGGTAATGACTCAAAACCCAGATTGTGCAACACTAGATACAACAATACTTGATGCACTACATATGATGCACGATGGGAAATTCTTACATCTTCCTGTGGTAGACAGACATGGATATGTTGCTGCTTGCGTCGATGTTTTGCAGATAACTCATGCGGCAATTTCCCTGGTTGAGAGTAGCTCTGGAGCTGTTAATGATGTGGCAAATACAATTATGCAAAAATTTTGGGACTCAGCTTTTGCTCTAGAGCCACCAGAAGATTCTGATACTCATAGTGAAGTTTCAGCGCTCATGACCTCGGATGGAGCAGATACAACAAAGTCTGCATATCACTCTATGGGTTTTGGAAATTCATTTCCTTTCAAATTTGAGGATCTCAATGGTCGCGTGCACCGATTCAACTGTGGTACTGAACATCTAGATGAGCTAGTATCTGCAGTCATGCAGAGAGTAGATATCAATGACAGAGAACGCCCTGCGATTGTGTATGAGGACGATGAAGGCGATAGAATTGTTCTTGGAACCGACAATGATCTTGTTTCTGCTGTCAGCTATGCTAGAACTGCAGGAGTGAAGGCATTAAAGTTGTATTTGGATTTCGGCAATTCAGCAAAACCAACAACACCGCAATCTAGTACAACCAGTATACAGAAATCTAGTGTTTTGTCTCTCCGCTCCAGTATTCTTGCAGGTGCTGTTGTTGTAACAAGCATTGGTGTAGTAGTCTACCTAAAACGGTCCAAATGA

Protein sequence

>Msa0659610

MNGLTRRNSGTHKKPPSMSKKFENGIHSEPSSKPSSPPSLESDGGERTVKKLRLSKALTISEGTSVSDACRRMAARRVDAVLLTDANALLSGIMTDKDIATRVIAEGLRPDQTMVSKVMTRNPLFVTSDTLAIDALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGAERQRGSNASGQLTIIFSYKYYSFKPPIVFEFLYVSRVAIASAADPVYVAAKKMQELRVNSAVIVSLSGTKIQGILTSKDILMRVVAQNLSPELTLVEKVMTQNPDCATLDTTILDALHMMHDGKFLHLPVVDRHGYVAACVDVLQITHAAISLVESSSGAVNDVANTIMQKFWDSAFALEPPEDSDTHSEVSALMTSDGADTTKSAYHSMGFGNSFPFKFEDLNGRVHRFNCGTEHLDELVSAVMQRVDINDRERPAIVYEDDEGDRIVLGTDNDLVSAVSYARTAGVKALKLYLDFGNSAKPTTPQSSTTSIQKSSVLSLRSSILAGAVVVTSIGVVVYLKRSK*