AlfalfaGEDB | Msa0660120

M. sativa cultivar zhongmu-4 / Msa0660120

KEGG: K13412
GO: GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0660120	XP_003630428.1	99.602	503	2	0	1	503	1	503	0.0	1038

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0660120	sp\|P28583\|CDPK_SOYBN	90.101	495	48	1	9	503	14	507	0.0	935

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0569960	Msa0660120	0.973425	2.084399e-136	-8.615850e-47
Msa0660120	Msa0706180	0.934043	7.424223e-96	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0660120	MtrunA17_Chr8g0385341	99.602	503	2	0	1	503	1	503	1038
Msa0660120	MtrunA17_Chr3g0131181	84.167	480	76	0	17	496	16	495	857
Msa0660120	MtrunA17_Chr1g0200601	74.494	494	122	3	1	490	1	494	787
Msa0660120	MtrunA17_Chr5g0448721	70.613	473	137	1	17	487	83	555	702
Msa0660120	MtrunA17_Chr1g0170281	69.915	472	141	1	15	485	103	574	700
Msa0660120	MtrunA17_Chr1g0176751	68.000	475	148	1	18	488	112	586	676
Msa0660120	MtrunA17_Chr1g0176421	64.898	490	140	1	15	472	146	635	660
Msa0660120	MtrunA17_Chr7g0267751	64.681	470	161	1	20	489	130	594	650
Msa0660120	MtrunA17_Chr0c02g0489761	62.821	468	171	2	6	470	52	519	618
Msa0660120	MtrunA17_Chr5g0441691	60.041	483	190	2	2	481	38	520	617

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0660120	AT1G35670.1	75.456	493	116	3	6	496	5	494	778
Msa0660120	AT4G09570.1	76.701	485	108	3	4	487	2	482	778
Msa0660120	AT5G23580.1	76.667	480	108	2	13	488	4	483	755
Msa0660120	AT4G35310.2	70.190	473	139	1	17	487	84	556	706
Msa0660120	AT4G35310.1	70.190	473	139	1	17	487	84	556	706
Msa0660120	AT2G17290.1	67.137	496	151	2	1	484	44	539	700
Msa0660120	AT2G17290.2	67.137	496	151	2	1	484	44	539	700
Msa0660120	AT3G10660.2	69.723	469	140	1	18	484	174	642	700
Msa0660120	AT3G10660.1	69.723	469	140	1	18	484	174	642	700
Msa0660120	AT5G04870.1	71.744	453	128	0	18	470	138	590	697

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Find 109 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGGGACAATTGACTA+TGG	0.503509	4_3:+70693670	Msa0660120:CDS
AAAATCTGTCGGAAGATCCC+GGG	0.548224	4_3:-70691334	None:intergenic
AAACTTGGTCAAGGTCAATT+CGG	0.470137	4_3:+70689392	Msa0660120:CDS
AAAGATGGCTTAAAGCGAGT+AGG	0.631853	4_3:+70693314	Msa0660120:CDS
AAATACCTACCTGCCCAAAA+TGG	0.391517	4_3:-70691187	None:intergenic
AACAATAGATATGCAAAATT+TGG	0.281431	4_3:-70694380	None:intergenic
AACATTGAAACCAGTAACAT+GGG	0.579378	4_3:+70689319	Msa0660120:CDS
AACTGTTCATTTAAATAAGC+TGG	0.427007	4_3:+70693708	Msa0660120:CDS
AAGAAGATTATGAAGATGTT+TGG	0.337148	4_3:+70689495	Msa0660120:CDS
AAGATAGAGAGAGAAAATAC+AGG	0.487543	4_3:+70689154	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCAATGTTATTGTTGGAGT+TGG	-	chr4_3:70689308-70689327	None:intergenic	30.0%
TAACATTGAAACCAGTAACA+TGG	+	chr4_3:70689318-70689337	Msa0660120:CDS	30.0%
AACATTGAAACCAGTAACAT+GGG	+	chr4_3:70689319-70689338	Msa0660120:CDS	30.0%
GTAACAGAGATATACAGAAT+GGG	+	chr4_3:70689365-70689384	Msa0660120:CDS	30.0%
TACTGCTGTTCATATTGTTA+TGG	+	chr4_3:70689592-70689611	Msa0660120:CDS	30.0%
GTATCAAAGAGAAAATTCTC+AGG	-	chr4_3:70689761-70689780	None:intergenic	30.0%
AAAAGAATAAAAACCCTACC+AGG	-	chr4_3:70689842-70689861	None:intergenic	30.0%
TGGATTCTTTGTGCTTAATT+TGG	+	chr4_3:70689918-70689937	Msa0660120:intron	30.0%
AAATTTCGGTTCTTGATTTC+TGG	+	chr4_3:70690066-70690085	Msa0660120:intron	30.0%
TAAGGGATTTAGGGATTATT+TGG	+	chr4_3:70690096-70690115	Msa0660120:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	70689165	70694446	70689165	ID=Msa0660120;Name=Msa0660120
chr4_3	mRNA	70689165	70694446	70689165	ID=Msa0660120-mRNA-1;Parent=Msa0660120;Name=Msa0660120-mRNA-1;_AED=0.08;_eAED=0.08;_QI=125\|1\|1\|1\|0.83\|0.85\|7\|142\|503
chr4_3	exon	70689165	70689842	70689165	ID=Msa0660120-mRNA-1:exon:21066;Parent=Msa0660120-mRNA-1
chr4_3	exon	70691056	70691199	70691056	ID=Msa0660120-mRNA-1:exon:21067;Parent=Msa0660120-mRNA-1
chr4_3	exon	70691326	70691478	70691326	ID=Msa0660120-mRNA-1:exon:21068;Parent=Msa0660120-mRNA-1
chr4_3	exon	70691714	70691829	70691714	ID=Msa0660120-mRNA-1:exon:21069;Parent=Msa0660120-mRNA-1
chr4_3	exon	70693212	70693379	70693212	ID=Msa0660120-mRNA-1:exon:21070;Parent=Msa0660120-mRNA-1
chr4_3	exon	70693658	70693882	70693658	ID=Msa0660120-mRNA-1:exon:21071;Parent=Msa0660120-mRNA-1
chr4_3	exon	70694152	70694446	70694152	ID=Msa0660120-mRNA-1:exon:21072;Parent=Msa0660120-mRNA-1
chr4_3	five_prime_UTR	70689165	70689289	70689165	ID=Msa0660120-mRNA-1:five_prime_utr;Parent=Msa0660120-mRNA-1
chr4_3	CDS	70689290	70689842	70689290	ID=Msa0660120-mRNA-1:cds;Parent=Msa0660120-mRNA-1
chr4_3	CDS	70691056	70691199	70691056	ID=Msa0660120-mRNA-1:cds;Parent=Msa0660120-mRNA-1
chr4_3	CDS	70691326	70691478	70691326	ID=Msa0660120-mRNA-1:cds;Parent=Msa0660120-mRNA-1
chr4_3	CDS	70691714	70691829	70691714	ID=Msa0660120-mRNA-1:cds;Parent=Msa0660120-mRNA-1
chr4_3	CDS	70693212	70693379	70693212	ID=Msa0660120-mRNA-1:cds;Parent=Msa0660120-mRNA-1
chr4_3	CDS	70693658	70693882	70693658	ID=Msa0660120-mRNA-1:cds;Parent=Msa0660120-mRNA-1
chr4_3	CDS	70694152	70694304	70694152	ID=Msa0660120-mRNA-1:cds;Parent=Msa0660120-mRNA-1
chr4_3	three_prime_UTR	70694305	70694446	70694305	ID=Msa0660120-mRNA-1:three_prime_utr;Parent=Msa0660120-mRNA-1

Gene Sequence

>Msa0660120

ATGGCGAAAGAGAATCCAACTCCAACAATAACATTGAAACCAGTAACATGGGTTTTACCCTACAGAACAGAGAAGGTAACAGAGATATACAGAATGGGTCGAAAACTTGGTCAAGGTCAATTCGGAACAACCTATCTATGCACACACAAATCAACCAACAAAACATTTGCTTGCAAATCAATCCCAAAGAGAAAGCTTTTCTGCAAAGAAGATTATGAAGATGTTTGGAGAGAGATTCAGATAATGCATCATTTATCTGAACATCCACACGTTGTTAGAATTGAAGGAACGTACGAGGATTCTACTGCTGTTCATATTGTTATGGAGCTTTGTGAAGGAGGTGAACTTTTTGATAGGATTGTGAAAAAGGGTCATTATAGTGAAAGACAGGCTGCTGGTTTGATTAAGACTATTGTTGAAGTTGTTGAATCTTGTCACTCTCTTGGTGTTATGCATAGGGATCTTAAACCTGAGAATTTTCTCTTTGATACTGTTGATGAAGATGCTAAGCTTAAAGCTACTGATTTTGGTTTGTCTGTTTTTTATAAACCTGGTGAATCCTTCTCTGATGTTGTTGGGAGCCCATACTATGTTGCACCGGAAGTCTTGCGCAAGCTCTATGGACCTGAATCAGATGTGTGGAGTGCTGGAGTTATTTTGTACATCTTATTAAGTGGGGTGCCACCATTTTGGGCAGAAACTGAACCCGGGATCTTCCGACAGATTTTATTAGGAAAACTTGATTTTCAGTCTGAGCCTTGGCCTAGCATTTCAGACAGCGCAAAGGATCTAATCCGGAAAATGCTTGATCAAAATCCGAGAACAAGGCTAACAGCGCATGAAGTACTCCGCCACCCATGGATTGTGGATGACAACATTGCACCTGATAAACCTATCGACTCTGCAGTTTTATCACGTCTGAAACAATTCTCTGCTATGAATAAACTGAAGAAGATGGCTTTGCGTGTTATTGCTGAGCGGCTGTCCGAGGAAGAAATTGGTGGCCTGAAAGAGTTATTCAAGATGATTGACACAGACAGCAGTGGAACCATAACATTTGATGAGTTAAAAGATGGCTTAAAGCGAGTAGGATCTGAACTTATGGAGTCTGAAATCCAGGATCTAATGGATGCTGCGGATGTTGATAAAAGTGGGACAATTGACTATGGTGAATTCATTGCTGCAACTGTTCATTTAAATAAGCTGGAGAGAGAGGAAAACCTGTTGTCAGCCTTCGCTTATTTTGACAAAGATGCTAGTGGTTACATAACCATTGATGAGATTTCACAAGCTTGTAAGGACTTTGGTTTAGATGATATCCATATTGATGAAATGATCAAGGAAATTGACCAGGACAATGATGGACAAATAGATTATAGTGAATTTGCTGCAATGATGAGAAAGGGCAATGGAGGGATAGGAAGGAGAACTATGAGAAACACACTAAATTTAAGAGATGCTTTGGGATTAGTAGGCAATGGATCCAATCAAGTTATTGATGGTTATCTTTAG

Protein sequence

>Msa0660120

MAKENPTPTITLKPVTWVLPYRTEKVTEIYRMGRKLGQGQFGTTYLCTHKSTNKTFACKSIPKRKLFCKEDYEDVWREIQIMHHLSEHPHVVRIEGTYEDSTAVHIVMELCEGGELFDRIVKKGHYSERQAAGLIKTIVEVVESCHSLGVMHRDLKPENFLFDTVDEDAKLKATDFGLSVFYKPGESFSDVVGSPYYVAPEVLRKLYGPESDVWSAGVILYILLSGVPPFWAETEPGIFRQILLGKLDFQSEPWPSISDSAKDLIRKMLDQNPRTRLTAHEVLRHPWIVDDNIAPDKPIDSAVLSRLKQFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDSSGTITFDELKDGLKRVGSELMESEIQDLMDAADVDKSGTIDYGEFIAATVHLNKLEREENLLSAFAYFDKDASGYITIDEISQACKDFGLDDIHIDEMIKEIDQDNDGQIDYSEFAAMMRKGNGGIGRRTMRNTLNLRDALGLVGNGSNQVIDGYL*