AlfalfaGEDB | Msa0665390

M. sativa cultivar zhongmu-4 / Msa0665390

KEGG: K11420
GO: GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0006325 GO:0006342 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008276 GO:0008327 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010428 GO:0010429 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0031047 GO:0031048 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0036094 GO:0036211 GO:0040029 GO:0042054 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF02182.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0665390	XP_013454650.2	58.824	425	142	14	4	411	73	481	5.38e-113	391
Msa0665390	XP_013454650.2	80.212	1036	144	10	336	1328	10	1027	0.0	1612

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0665390	sp\|Q8VZ17\|SUVH6_ARATH	61.303	522	186	7	822	1328	270	790	0.0	635

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0665390	A0A396HYY4	58.824	425	142	14	4	411	98	506	3.82e-113	391
Msa0665390	A0A396HYY4	78.322	1061	144	10	336	1328	10	1052	0.0	1600

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TFs/TRs:

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Gene ID	Type	Classification
Msa0665390	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0535850	Msa0665390	0.870199	1.748133e-66	-8.615850e-47
Msa0535860	Msa0665390	0.865229	6.872720e-65	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0665390	MtrunA17_Chr4g0003511	78.322	1061	144	10	336	1328	10	1052	0.0	1600
Msa0665390	MtrunA17_Chr4g0003511	58.824	425	142	14	4	411	98	506	7.36e-117	391
Msa0665390	MtrunA17_Chr4g0003501	85.339	914	129	3	416	1328	46	955	0.0	1550
Msa0665390	MtrunA17_Chr4g0003501	46.982	381	80	9	129	411	55	411	4.64e-68	249
Msa0665390	MtrunA17_Chr4g0003501	71.429	182	28	2	4	184	26	184	1.22e-63	235
Msa0665390	MtrunA17_Chr5g0399801	70.424	1038	199	10	395	1328	56	1089	0.0	1398
Msa0665390	MtrunA17_Chr5g0399801	47.522	343	105	9	4	331	62	344	6.42e-64	238
Msa0665390	MtrunA17_Chr5g0399801	62.500	96	15	1	337	411	448	543	2.13e-22	104
Msa0665390	MtrunA17_Chr7g0232811	42.293	532	221	10	817	1328	74	539	9.76e-121	386
Msa0665390	MtrunA17_Chr3g0080761	40.370	540	299	15	808	1327	127	663	3.56e-118	384

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0665390	AT2G22740.2	61.303	522	186	7	822	1328	270	790	0.0	635
Msa0665390	AT2G22740.1	61.303	522	186	7	822	1328	270	790	0.0	635
Msa0665390	AT2G35160.2	59.302	516	175	6	821	1328	306	794	0.0	626
Msa0665390	AT2G35160.5	59.302	516	175	6	821	1328	270	758	0.0	626
Msa0665390	AT2G35160.3	59.302	516	175	6	821	1328	306	794	0.0	626
Msa0665390	AT2G35160.1	59.302	516	175	6	821	1328	306	794	0.0	626
Msa0665390	AT2G35160.4	59.302	516	175	6	821	1328	306	794	0.0	626
Msa0665390	AT5G04940.2	40.561	535	289	14	811	1327	146	669	1.05e-117	383
Msa0665390	AT5G04940.1	40.561	535	289	14	811	1327	146	669	1.05e-117	383
Msa0665390	AT5G13960.1	41.045	536	270	15	824	1328	104	624	1.10e-112	368

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Find 287 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATTTACACTTGAACC+AGG	0.642077	4_4:-4829746	None:intergenic
AAAACCAATTCAATGGGATG+GGG	0.555969	4_4:+4830835	Msa0665390:CDS
AAAACTCGAAAGTAGTTCAA+AGG	0.583508	4_4:+4829448	Msa0665390:CDS
AAAACTGACATTGGTGGGTA+TGG	0.509846	4_4:+4828965	Msa0665390:CDS
AAAACTGGAATTGGTGGGTA+TGG	0.435680	4_4:+4828149	Msa0665390:CDS
AAAACTGGAATTGGTGGGTA+TGG	0.541809	4_4:+4827855	Msa0665390:CDS
AAAAGCTCGGAACAGTTGCA+AGG	0.627701	4_4:-4829837	None:intergenic
AAAAGTGGAATTGGTTGGCA+TGG	0.620927	4_4:+4827561	Msa0665390:CDS
AAAAGTGTCACAAAATCACC+TGG	0.628473	4_4:+4829728	Msa0665390:CDS
AAAATTGCTACCAAGTCAAA+AGG	0.486120	4_4:+4828462	Msa0665390:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTTATCTGATCAAGTAGAT+GGG	+	chr4_4:4827512-4827531	Msa0665390:CDS	30.0%
AGTGATTTCATCTCATCAAA+TGG	+	chr4_4:4827801-4827820	Msa0665390:CDS	30.0%
TCAAATGGATGAGTCTAATT+TGG	+	chr4_4:4827816-4827835	Msa0665390:CDS	30.0%
AGTGATTTCATCTCATCAAA+TGG	+	chr4_4:4827801-4827820	Msa0665390:CDS	30.0%
TCAAATGGATGAGTCTAATT+TGG	+	chr4_4:4827816-4827835	Msa0665390:CDS	30.0%
GAAAGATGAATCTACAAAAC+TGG	+	chr4_4:4828134-4828153	Msa0665390:CDS	30.0%
TGAATCTACAAAACTGGAAT+TGG	+	chr4_4:4828140-4828159	Msa0665390:CDS	30.0%
TTAATGATATTGGACAACGA+GGG	-	chr4_4:4828246-4828265	None:intergenic	30.0%
ATTAATGATATTGGACAACG+AGG	-	chr4_4:4828247-4828266	None:intergenic	30.0%
TCGTTGTCCAATATCATTAA+TGG	+	chr4_4:4828246-4828265	Msa0665390:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	4827355	4831341	4827355	ID=Msa0665390;Name=Msa0665390
chr4_4	mRNA	4827355	4831341	4827355	ID=Msa0665390-mRNA-1;Parent=Msa0665390;Name=Msa0665390-mRNA-1;_AED=0.01;_eAED=0.06;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|1328
chr4_4	exon	4827355	4831341	4827355	ID=Msa0665390-mRNA-1:exon:1610;Parent=Msa0665390-mRNA-1
chr4_4	CDS	4827355	4831341	4827355	ID=Msa0665390-mRNA-1:cds;Parent=Msa0665390-mRNA-1

Gene Sequence

>Msa0665390

ATGGTACGTGTTGAGGATAAGAGTGGCAAAGATTCAGGTGAAGCTGATAGTCCCAACGAAGAAACGTATCCTCAAAATTTTGAGTTGAACGAGGATTTGTTGGTTACAAACACTGTTGAACAAAGAAGTGACTGTACTTTGAAGGAGGATCCCATGGTCTTATCTGATCAAGTAGATGGGGATAGTTTGGCTAACGATGAACCTGCAAAAGTGGAATTGGTTGGCATGGAAACTATGGATACGGAATTTGCAACTGAAGACTGTGCCTTGAATAAGGAAGATCCCGTGGTCCCATCTCAACAATTGGATGTGCCTATTTTGGAGACGTTCGATGTGGAATTTGCAACTGAAAGCTTTAGTTTGAAGAACGAAAACGATGTGCCTATTTTGGAGACTTTCGATGTGGAATTTGCATCTGAAGGCTGTAGTTTGAAGAAAGAAAATGCAGTGATTTCATCTCATCAAATGGATGAGTCTAATTTGGTGAAAGATGAACCTGCAAAACTGGAATTGGTGGGTATGGAAACTTTGGATACAGAATTTGCAACTGAAGACTGTACCTTGAATAAGGAAGATCCCGTGGTCCCATCTCAACAATTGGATGTGCCTATTTTGGAGACGTTTGATGTGGAATTTGCAACTGAAAGCTGTAGTTTGAAGAACGAAAACGATGTGCCTATTTTGGAGACTTTCGACGTGGAATTTGAAACTGAAGGCTGTAGTTTGAAGAACGAAAATGCAGTGATTTCATCTCATCAAATGGATGAGTCTAATTTGGCGAAAGATGAATCTACAAAACTGGAATTGGTGGGTATGGAAACTTTGGATACGGAATTTGCAATTGAAGACTGTACCTTGAATAAGGAAGCTATGTCTGACGACTCAAAACCCTCGTTGTCCAATATCATTAATGGTGGTTCCGGTCCTTGTATGAAGGAGGCTTTAACTAAAAGGTATGCTCTTCGTAAAAAAGTTGCAGAGTTCAGAAATTTGGTTAACATAAATTCTAAGGTCTCATCAGGCAGGAAAGTAGTGCAAGGTTTGATGGCTACATCAGAATGGAAAGCAGGAAAGAAAGTTGATTTTTATGCCCAGCTGGACAAGTCTAAAATTGCTACCAAGTCAAAAGGTGTACTGAATCTTTCTGGGCACCAGCCGTTGAAAAAGAAAAGAGAAAATTCTAGTTCTGATGACATGGGTCAATTAGTAACAGTGGAGAAGAGTGGGGAAGATTTAGACCTAATTCCTCAAAATTATGAGTTGAACGAGGATTTGTTTGTTACAAACACTGTTGAACAAACAAGTGACTGTAGTTTGAAGAAGGAAGATCCCATGGTCTTATATGATCAAGTGGATGGGGATAGTTTTGCTAACGATGAACCTGCAGAAGTGCAATTGATTGGCATTAGAACTATGGATACGGAATTTGCAACTGAAGACTGTACCTTCAAAAAGGAAGATCCCATGGTCTCATCTCATCAATTGGATGTGCGTATTTTGGAGACTTTCGATGTGAAATTTTCAACTGAAAGCTGTGGTGTGAAGAACGAAAATGCAGTGATTTCTTCTCATCAAATGGATGAGTCTACTTTGGCAAATGATGAACATGCAAAACTGACATTGGTGGGTATGGAAACTTTGGATACGGAATTTGTCACAGAATGCTTCGTAAAACAAGATTTGTCCTATATATCAAAGGCATTGTATCCAGTTGGCGAGGCAGCTATGTCTGATGACTCAAAATCCTCGTTGTCCAATATCAATATTGGTGGTTCTGGTCCTTTTATGAAGGAGGCTTTAACTGAAAGGTATGCTCTTCGTAAAAAAGTTTCAGAGTTCAGAGATTTTCCACGTTTATGTGAAGACAATGCTCCCCATCTCAGTCAGGATGAGTGTCGAAGCGAGCTTTCTTCTTTGAAAGAAGTTGCAGTCACTGACGTAAGAGAAGCAGAAAATAACAAGAGAAAGTTTGATAACATTGTTCAAGATGATTCTGCAGGGAACCCTAAACTTCCTGAAAAACATAATTGTCGTCATCATCAGGTTAACATAAATTCTAAGGCAGTGGTTAAAGCGGAAAACATGAACACTGTAAAACTCGAAAGTAGTTCAAAGGTCTCATCAGGAAGGAAAGTAGTGCGAGGTTTGGCATCTATATCAGAATGGAAAGAAATGAAAAGAAAGGGAAAGAAAGTAGATTTTATTGCCCAGCTGGACAGGTCTAAACCTGCTACCAAGTTGAGAGGTGGACTGAATCATTCTGAGAACCAGCCGTTGAAAAAGAAAAGAGAAAATTCTAGTTCTGCTGACATGGGTCAATTAGTAATGTTGGAGAGGAATTCTCTAGACCCTAATGAAAATAACGAACACTTAAAAAGTGTCACAAAATCACCTGGTTCAAGTGTAAATGTTTTTCCACTTGGTCGTAGCAATTTGAGTGGTCATGAGAATGACTCAGTGGCCAGGAATAAAGTGAGGAAAGCCTTGCAACTGTTCCGAGCTTTTTATAAAAAGATTTTGCAGGAAGCCGAAGCAAAACCAAAGTCAAATGAGAAAGAAATAAAGAGGTTTGATTTACAAGCTGCGAAAAAGCTTAAGGAGGAAGGGATCTATGTTAATGAAGAGGAGAATATCTTAGGATCTGTTCCTGGGGTTGAAGTGGGTGATGAATTTCAATACAGAATAGAGCTTAATATAATTGGCCTTCATCGCGAGATTCAGGGTGGTATAGATTATGTGAACCAAAAAGATAAGATTCTTGCAACTAGTATTGTTGCTTCGGGGGGCTATGCTGACGACTTAGATAACTCAGATGTTTTGATATATACAGGGCAGGGTGGAAATGTGACGAGCAGTGATAAAGAGCCAGAAGATCAGAAGCTTGAACGGGGAAATCTTGCTTTGAAGAACAGTAGGGAGGTAAAGAATTCCGTTAGGGTGATACGGGGCTCTGAATCGATAGATGGAAAAAGCAAGATATATGTTTATGATGGACTTTATGTAGTTGAGTCATGTTGGCAGGATATAGGGCCACATGGGAAGCTGGTTCATAAGTTTCGCTTGCGAAGAATCCCGGGTCAACCCGAGCTTGCCTTGAAGGAAGTGAAGAAATCTAAGTTCAAAACAAGAGAAGGTCTATGTGTCGAAGATATTTCCTACGGGAAAGAGAAAATTCCTATATGTGCTGTGAACACCATAGATAACGAGAAACCCCCTACATTTAAATACATAACTGGGATGATATATCCTGAATGTTGCAATCTTGTCCCTCCAAAAGGATGTAATTGTACTAATGGATGCTCTGACCATAAGAAATGTTCTTGTGTACTCAAAAATGGAGGGGAGATTCCATTTAATCATAATGGGGATATTATAGAAGTAAAGCCTCTAGTGTATGAGTGTGGTCCTAAATGCAAGTGCTCTTCAACCTGCCATAACAGAGTTAGCCAACTTGGCATAAATATTCAACTCGAAATATTTAAAACCAATTCAATGGGATGGGGTGTAAGATCCTTAAATTCCATCCCTTCAGGAAGTTTTATCTGTGAATATATTGGAGAGGTTCTTGAAGAAAAGGAAGCTGAACAAAGAACAGGTAATGATGAGTATCTTTTCGATATCGGAAATAACAAAAACAACAATAATCTTTGGGATGGACTTTCAAACCTTTTTCCAGATTCTGACTCAAGTTCAAGTGAAGTAGTGGAGGATTCTGACTTCACTATCGATGCCGCTCAGTTTGGTAATGTTGGGAGATTTGTTAACCATAGCTGCTCCCCAAATCTTTATGCTCAGGATGTCCTTTATGATCATCAAGACAGCAGGGTTCCTCACATCATGTTATTTGCTGCTGAGAACATTCCTCCCTTGCAAGAGCTGACATACGATTACAATTACATGATAGATACAGTTCGTGATTCTGATGGCAATATCAAAAAGAAGTACTGCTTTTGTGGTTCTGAGGAATGTACTGGTAGGTTGTATTGA

Protein sequence

>Msa0665390

MVRVEDKSGKDSGEADSPNEETYPQNFELNEDLLVTNTVEQRSDCTLKEDPMVLSDQVDGDSLANDEPAKVELVGMETMDTEFATEDCALNKEDPVVPSQQLDVPILETFDVEFATESFSLKNENDVPILETFDVEFASEGCSLKKENAVISSHQMDESNLVKDEPAKLELVGMETLDTEFATEDCTLNKEDPVVPSQQLDVPILETFDVEFATESCSLKNENDVPILETFDVEFETEGCSLKNENAVISSHQMDESNLAKDESTKLELVGMETLDTEFAIEDCTLNKEAMSDDSKPSLSNIINGGSGPCMKEALTKRYALRKKVAEFRNLVNINSKVSSGRKVVQGLMATSEWKAGKKVDFYAQLDKSKIATKSKGVLNLSGHQPLKKKRENSSSDDMGQLVTVEKSGEDLDLIPQNYELNEDLFVTNTVEQTSDCSLKKEDPMVLYDQVDGDSFANDEPAEVQLIGIRTMDTEFATEDCTFKKEDPMVSSHQLDVRILETFDVKFSTESCGVKNENAVISSHQMDESTLANDEHAKLTLVGMETLDTEFVTECFVKQDLSYISKALYPVGEAAMSDDSKSSLSNINIGGSGPFMKEALTERYALRKKVSEFRDFPRLCEDNAPHLSQDECRSELSSLKEVAVTDVREAENNKRKFDNIVQDDSAGNPKLPEKHNCRHHQVNINSKAVVKAENMNTVKLESSSKVSSGRKVVRGLASISEWKEMKRKGKKVDFIAQLDRSKPATKLRGGLNHSENQPLKKKRENSSSADMGQLVMLERNSLDPNENNEHLKSVTKSPGSSVNVFPLGRSNLSGHENDSVARNKVRKALQLFRAFYKKILQEAEAKPKSNEKEIKRFDLQAAKKLKEEGIYVNEEENILGSVPGVEVGDEFQYRIELNIIGLHREIQGGIDYVNQKDKILATSIVASGGYADDLDNSDVLIYTGQGGNVTSSDKEPEDQKLERGNLALKNSREVKNSVRVIRGSESIDGKSKIYVYDGLYVVESCWQDIGPHGKLVHKFRLRRIPGQPELALKEVKKSKFKTREGLCVEDISYGKEKIPICAVNTIDNEKPPTFKYITGMIYPECCNLVPPKGCNCTNGCSDHKKCSCVLKNGGEIPFNHNGDIIEVKPLVYECGPKCKCSSTCHNRVSQLGINIQLEIFKTNSMGWGVRSLNSIPSGSFICEYIGEVLEEKEAEQRTGNDEYLFDIGNNKNNNNLWDGLSNLFPDSDSSSSEVVEDSDFTIDAAQFGNVGRFVNHSCSPNLYAQDVLYDHQDSRVPHIMLFAAENIPPLQELTYDYNYMIDTVRDSDGNIKKKYCFCGSEECTGRLY*