AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0668340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0668340 MtrunA17_Chr5g0419961 87.097 155 19 1 1 154 510 664 2.21e-92 281
Msa0668340 MtrunA17_Chr4g0007211 87.742 155 18 1 1 154 963 1117 2.50e-90 284
Msa0668340 MtrunA17_Chr4g0007091 85.806 155 21 1 1 154 956 1110 6.79e-88 277
Msa0668340 MtrunA17_Chr4g0007101 85.161 155 22 1 1 154 963 1117 1.28e-79 254
Msa0668340 MtrunA17_Chr4g0007291 77.419 155 34 1 1 154 612 766 1.66e-78 247
Msa0668340 MtrunA17_Chr4g0007141 83.226 155 22 2 1 154 267 418 1.37e-76 233
Msa0668340 MtrunA17_Chr4g0007111 74.839 155 38 1 1 154 215 369 9.31e-76 230
Msa0668340 MtrunA17_Chr4g0007151 70.968 155 38 2 1 154 958 1106 3.29e-70 228
Msa0668340 MtrunA17_Chr4g0007331 76.774 155 35 1 1 154 963 1117 2.83e-69 226
Msa0668340 MtrunA17_Chr4g0007201 70.968 155 38 2 1 154 959 1107 2.42e-62 206
Msa0668340 MtrunA17_Chr2g0316441 65.806 155 48 4 1 153 778 929 9.03e-58 193
Msa0668340 MtrunA17_Chr4g0007121 60.479 167 52 4 1 153 193 359 5.79e-50 163
Msa0668340 MtrunA17_Chr8g0335921 50.641 156 70 4 1 154 33 183 1.58e-44 144
Msa0668340 MtrunA17_Chr4g0007441 52.941 153 67 2 1 152 890 1038 2.98e-44 155
Msa0668340 MtrunA17_Chr4g0008271 54.248 153 62 3 1 152 879 1024 2.56e-43 152
Msa0668340 MtrunA17_Chr4g0005021 51.299 154 68 4 1 152 900 1048 2.76e-40 143
Msa0668340 MtrunA17_Chr4g0007571 52.597 154 66 3 1 152 732 880 4.19e-40 143
Msa0668340 MtrunA17_Chr4g0007501 50.980 153 63 4 1 152 231 372 8.27e-40 137
Msa0668340 MtrunA17_Chr4g0008291 51.948 154 68 3 1 152 853 1002 1.48e-39 141
Msa0668340 MtrunA17_Chr4g0008211 50.980 153 72 2 1 152 889 1039 4.62e-39 140
Msa0668340 MtrunA17_Chr4g0007431 51.634 153 67 4 1 151 912 1059 8.69e-39 139
Msa0668340 MtrunA17_Chr4g0007511 50.649 154 64 4 1 153 920 1062 2.73e-38 137
Msa0668340 MtrunA17_Chr4g0007451 50.649 154 64 4 1 153 920 1062 3.21e-38 137
Msa0668340 MtrunA17_Chr4g0007411 54.225 142 58 3 1 140 450 586 4.40e-38 136
Msa0668340 MtrunA17_Chr4g0008201 52.713 129 56 2 1 128 33 157 2.22e-35 121
Msa0668340 MtrunA17_Chr4g0008181 49.275 138 64 3 17 152 467 600 6.78e-32 119
Msa0668340 MtrunA17_Chr4g0007471 43.275 171 68 5 1 153 285 444 7.01e-32 117
Msa0668340 MtrunA17_Chr4g0007381 40.000 140 75 2 1 140 917 1047 3.37e-27 106
Msa0668340 MtrunA17_Chr4g0007551 38.983 177 79 3 1 152 455 627 1.92e-25 100
Msa0668340 MtrunA17_Chr6g0469721 37.879 132 75 3 1 132 68 192 1.26e-24 94.0
Msa0668340 MtrunA17_Chr6g0455871 42.623 122 69 1 1 121 52 173 8.45e-24 92.0
Msa0668340 MtrunA17_Chr8g0354011 43.548 124 59 2 1 121 7 122 7.13e-23 87.8
Msa0668340 MtrunA17_Chr3g0097291 40.458 131 70 3 1 128 236 361 1.22e-22 92.0
Msa0668340 MtrunA17_Chr1g0202011 33.835 133 88 0 1 133 67 199 1.37e-22 89.0
Msa0668340 MtrunA17_Chr3g0097001 43.704 135 67 5 1 130 551 681 2.76e-22 92.0
Msa0668340 MtrunA17_Chr3g0097721 43.411 129 65 4 1 128 299 420 4.08e-22 91.3
Msa0668340 MtrunA17_Chr8g0354031 42.188 128 59 2 1 121 748 867 4.59e-22 91.7
Msa0668340 MtrunA17_Chr6g0455861 40.310 129 76 1 1 128 360 488 8.00e-22 90.5
Msa0668340 MtrunA17_Chr3g0097561 41.085 129 68 4 1 128 93 214 9.08e-22 87.4
Msa0668340 MtrunA17_Chr3g0097691 41.270 126 66 3 1 125 150 268 1.08e-21 88.2
Msa0668340 MtrunA17_Chr2g0317551 41.538 130 69 4 1 128 651 775 1.20e-21 90.1
Msa0668340 MtrunA17_Chr3g0097761 38.281 128 77 1 1 128 653 778 2.32e-21 89.4
Msa0668340 MtrunA17_Chr2g0304271 35.338 133 83 2 1 131 110 241 2.36e-21 86.7
Msa0668340 MtrunA17_Chr3g0093881 37.589 141 82 2 1 137 662 800 2.58e-21 89.4
Msa0668340 MtrunA17_Chr5g0426051 38.971 136 73 4 1 131 466 596 2.69e-21 89.4
Msa0668340 MtrunA17_Chr8g0353761 58.333 72 30 0 1 72 7 78 3.14e-21 82.0
Msa0668340 MtrunA17_Chr3g0097501 40.310 129 73 3 1 128 150 275 3.18e-21 87.0
Msa0668340 MtrunA17_Chr8g0354061 42.969 128 58 2 1 121 753 872 3.20e-21 89.0
Msa0668340 MtrunA17_Chr3g0097261 41.406 128 67 3 1 125 662 784 3.49e-21 89.0
Msa0668340 MtrunA17_Chr3g0104561 38.411 151 82 4 1 144 649 795 3.69e-21 89.0
Msa0668340 MtrunA17_Chr6g0455721 38.760 129 78 1 1 128 804 932 5.09e-21 88.6
Msa0668340 MtrunA17_Chr3g0095011 40.157 127 71 2 1 126 655 777 6.59e-21 88.2
Msa0668340 MtrunA17_Chr3g0097461 40.458 131 70 3 1 128 651 776 7.32e-21 88.2
Msa0668340 MtrunA17_Chr3g0097381 40.476 126 67 4 1 125 7 125 8.49e-21 82.8
Msa0668340 MtrunA17_Chr6g0455751 39.535 129 77 1 1 128 607 735 9.63e-21 87.8
Msa0668340 MtrunA17_Chr8g0354041 43.548 124 59 2 1 121 752 867 1.39e-20 87.4
Msa0668340 MtrunA17_Chr3g0097701 41.085 129 68 4 1 128 658 779 1.48e-20 87.0
Msa0668340 MtrunA17_Chr6g0455851 42.424 132 69 4 1 128 871 999 1.62e-20 87.0
Msa0668340 MtrunA17_Chr3g0097331 40.678 118 68 1 1 118 560 675 1.80e-20 87.0
Msa0668340 MtrunA17_Chr6g0455781 39.535 129 77 1 1 128 720 848 2.58e-20 86.7
Msa0668340 MtrunA17_Chr3g0097311 38.028 142 79 4 1 137 632 769 2.61e-20 86.3
Msa0668340 MtrunA17_Chr4g0023651 38.281 128 77 1 1 128 356 481 3.91e-20 85.9
Msa0668340 MtrunA17_Chr4g0022051 35.115 131 84 1 1 131 203 332 5.34e-20 84.3
Msa0668340 MtrunA17_Chr4g0003781 38.760 129 71 3 1 126 452 575 5.69e-20 85.5
Msa0668340 MtrunA17_Chr8g0345411 38.281 128 73 2 1 126 212 335 7.50e-20 84.3
Msa0668340 MtrunA17_Chr3g0097281 40.476 126 71 3 1 125 173 295 1.25e-19 83.2
Msa0668340 MtrunA17_Chr5g0439511 36.129 155 85 3 1 151 168 312 1.26e-19 83.2
Msa0668340 MtrunA17_Chr7g0215761 40.566 106 61 1 1 104 814 919 1.32e-19 84.3
Msa0668340 MtrunA17_Chr6g0455701 37.209 129 80 1 1 128 816 944 1.44e-19 84.3
Msa0668340 MtrunA17_Chr3g0120451 41.045 134 63 3 1 128 732 855 5.10e-19 82.8
Msa0668340 MtrunA17_Chr7g0216801 42.718 103 48 3 1 99 803 898 5.56e-19 82.8
Msa0668340 MtrunA17_Chr3g0097361 38.028 142 80 4 1 137 720 858 5.72e-19 82.4
Msa0668340 MtrunA17_Chr3g0096901 39.552 134 74 4 1 130 135 265 6.16e-19 80.9
Msa0668340 MtrunA17_Chr2g0284851 35.211 142 74 4 1 130 113 248 9.25e-19 79.7
Msa0668340 MtrunA17_Chr6g0455801 34.615 156 93 3 1 154 794 942 1.14e-18 81.6
Msa0668340 MtrunA17_Chr5g0420291 35.938 128 81 1 1 128 100 226 1.18e-18 79.3
Msa0668340 MtrunA17_Chr3g0097341 40.476 126 70 3 1 125 652 773 1.40e-18 81.6
Msa0668340 MtrunA17_Chr5g0439921 39.815 108 61 2 1 108 874 977 1.72e-18 81.3
Msa0668340 MtrunA17_Chr3g0097411 40.310 129 67 4 1 125 641 763 1.95e-18 80.9
Msa0668340 MtrunA17_Chr6g0478761 42.105 114 62 2 1 114 210 319 2.85e-18 80.1
Msa0668340 MtrunA17_Chr6g0455811 37.692 130 79 2 1 128 823 952 3.85e-18 80.1
Msa0668340 MtrunA17_Chr2g0284871 34.868 152 83 4 1 141 837 983 5.46e-18 79.7
Msa0668340 MtrunA17_Chr2g0284891 36.879 141 76 4 1 133 609 744 7.27e-18 79.3
Msa0668340 MtrunA17_Chr2g0284741 36.719 128 69 2 1 121 845 967 7.66e-18 79.3
Msa0668340 MtrunA17_Chr5g0429421 36.090 133 81 2 1 131 766 896 1.02e-17 79.0
Msa0668340 MtrunA17_Chr5g0439451 39.855 138 74 4 1 133 970 1103 1.35e-17 78.6
Msa0668340 MtrunA17_Chr5g0446871 42.593 108 57 2 1 108 899 1001 1.47e-17 78.6
Msa0668340 MtrunA17_Chr5g0446221 53.846 65 30 0 1 65 98 162 1.52e-17 75.9
Msa0668340 MtrunA17_Chr5g0445711 40.566 106 57 2 1 106 215 314 1.52e-17 77.8
Msa0668340 MtrunA17_Chr5g0435341 51.899 79 36 1 1 79 699 775 1.66e-17 78.6
Msa0668340 MtrunA17_Chr5g0440161 39.823 113 58 3 1 107 916 1024 1.86e-17 78.2
Msa0668340 MtrunA17_Chr5g0435331 51.899 79 36 1 1 79 888 964 2.26e-17 78.2
Msa0668340 MtrunA17_Chr5g0426041 36.242 149 85 4 1 144 834 977 2.68e-17 77.8
Msa0668340 MtrunA17_Chr3g0097531 52.308 65 30 1 1 65 7 70 3.08e-17 72.0
Msa0668340 MtrunA17_Chr7g0219371 55.385 65 29 0 1 65 785 849 3.63e-17 77.4
Msa0668340 MtrunA17_Chr5g0446091 50.667 75 37 0 1 75 153 227 4.55e-17 75.9
Msa0668340 MtrunA17_Chr7g0216721 40.000 100 57 1 1 100 138 234 5.29e-17 75.5
Msa0668340 MtrunA17_Chr6g0455671 39.098 133 70 4 1 128 786 912 5.34e-17 77.0
Msa0668340 MtrunA17_Chr4g0032101 37.168 113 61 3 1 107 875 983 5.61e-17 77.0
Msa0668340 MtrunA17_Chr3g0097321 40.625 128 68 3 1 125 654 776 6.87e-17 76.6
Msa0668340 MtrunA17_Chr7g0216781 52.174 69 33 0 1 69 308 376 7.84e-17 76.3
Msa0668340 MtrunA17_Chr3g0097571 37.241 145 65 5 1 125 152 290 8.09e-17 75.5
Msa0668340 MtrunA17_Chr5g0439821 38.053 113 60 3 1 107 936 1044 8.14e-17 76.6
Msa0668340 MtrunA17_Chr5g0446861 42.593 108 58 2 1 108 329 432 8.52e-17 76.3
Msa0668340 MtrunA17_Chr5g0439931 38.318 107 62 2 2 108 48 150 1.09e-16 72.4
Msa0668340 MtrunA17_Chr5g0440201 38.938 113 59 3 1 107 876 984 1.12e-16 75.9
Msa0668340 MtrunA17_Chr5g0446021 50.667 75 37 0 1 75 892 966 1.16e-16 75.9
Msa0668340 MtrunA17_Chr5g0439791 37.719 114 61 3 1 108 872 981 1.18e-16 75.9
Msa0668340 MtrunA17_Chr1g0169661 32.824 131 87 1 1 131 206 335 1.21e-16 75.1
Msa0668340 MtrunA17_Chr5g0439461 41.905 105 57 2 1 104 960 1061 1.39e-16 75.9
Msa0668340 MtrunA17_Chr8g0380811 34.752 141 79 3 1 128 772 912 1.61e-16 75.5
Msa0668340 MtrunA17_Chr7g0217371 52.239 67 32 0 1 67 795 861 1.78e-16 75.5
Msa0668340 MtrunA17_Chr7g0216951 39.423 104 61 1 1 104 258 359 1.91e-16 75.1
Msa0668340 MtrunA17_Chr5g0446881 55.385 65 29 0 1 65 219 283 2.17e-16 74.3
Msa0668340 MtrunA17_Chr7g0216661 50.746 67 33 0 1 67 379 445 2.31e-16 75.1
Msa0668340 MtrunA17_Chr6g0463281 32.394 142 85 4 1 140 991 1123 2.53e-16 75.1
Msa0668340 MtrunA17_Chr2g0284861 36.842 133 71 2 1 125 841 968 3.12e-16 74.7
Msa0668340 MtrunA17_Chr7g0216701 50.746 67 33 0 1 67 791 857 3.44e-16 74.7
Msa0668340 MtrunA17_Chr5g0439811 37.168 113 61 3 1 107 767 875 4.32e-16 74.3
Msa0668340 MtrunA17_Chr5g0440101 41.818 110 56 4 1 108 922 1025 4.53e-16 74.3
Msa0668340 MtrunA17_Chr7g0216641 50.746 67 33 0 1 67 786 852 5.72e-16 73.9
Msa0668340 MtrunA17_Chr4g0014151 42.593 108 59 1 1 108 940 1044 6.42e-16 73.9
Msa0668340 MtrunA17_Chr7g0216761 50.725 69 34 0 1 69 136 204 6.68e-16 72.4
Msa0668340 MtrunA17_Chr2g0304481 35.252 139 73 3 1 132 902 1030 7.24e-16 73.6
Msa0668340 MtrunA17_Chr5g0440031 38.053 113 60 3 1 107 920 1028 7.33e-16 73.6
Msa0668340 MtrunA17_Chr5g0440011 38.053 113 60 3 1 107 877 985 7.37e-16 73.6
Msa0668340 MtrunA17_Chr4g0024361 40.000 110 58 4 1 108 916 1019 8.38e-16 73.6
Msa0668340 MtrunA17_Chr4g0006941 33.571 140 80 4 1 134 854 986 8.41e-16 73.6
Msa0668340 MtrunA17_Chr6g0464631 36.296 135 76 4 1 131 1069 1197 8.48e-16 73.6
Msa0668340 MtrunA17_Chr6g0463291 34.266 143 81 5 1 140 590 722 9.32e-16 73.2
Msa0668340 MtrunA17_Chr2g0312401 40.187 107 57 4 1 104 236 338 1.03e-15 72.8
Msa0668340 MtrunA17_Chr5g0440151 38.182 110 59 3 1 108 871 973 1.18e-15 73.2
Msa0668340 MtrunA17_Chr4g0008241 32.353 136 84 2 1 128 776 911 1.58e-15 72.8
Msa0668340 MtrunA17_Chr4g0003071 35.965 114 61 2 1 109 52 158 2.19e-15 69.7
Msa0668340 MtrunA17_Chr6g0465231 38.346 133 72 5 1 129 981 1107 2.23e-15 72.4
Msa0668340 MtrunA17_Chr6g0463251 31.690 142 86 4 1 140 951 1083 2.32e-15 72.4
Msa0668340 MtrunA17_Chr6g0465181 38.168 131 74 4 1 129 1010 1135 2.39e-15 72.4
Msa0668340 MtrunA17_Chr5g0440141 37.168 113 61 3 1 107 943 1051 2.83e-15 72.0
Msa0668340 MtrunA17_Chr6g0465151 35.338 133 76 4 1 129 772 898 3.12e-15 72.0
Msa0668340 MtrunA17_Chr5g0439881 46.053 76 38 1 3 78 70 142 4.77e-15 68.6
Msa0668340 MtrunA17_Chr4g0024381 51.667 60 29 0 1 60 93 152 5.98e-15 67.8
Msa0668340 MtrunA17_Chr4g0004161 37.984 129 63 5 1 125 936 1051 8.48e-15 70.5
Msa0668340 MtrunA17_Chr4g0006861 33.094 139 82 4 1 134 882 1014 2.24e-14 69.3
Msa0668340 MtrunA17_Chr5g0411301 36.522 115 67 2 1 110 384 497 2.45e-14 69.3
Msa0668340 MtrunA17_Chr6g0465291 35.338 133 76 4 1 129 1068 1194 2.67e-14 69.3
Msa0668340 MtrunA17_Chr6g0465251 35.338 133 76 5 1 129 356 482 2.88e-14 68.9
Msa0668340 MtrunA17_Chr3g0106171 31.852 135 83 3 1 131 858 987 6.37e-14 68.2
Msa0668340 MtrunA17_Chr4g0006961 32.374 139 83 4 1 134 570 702 6.47e-14 68.2
Msa0668340 MtrunA17_Chr1g0161321 40.741 81 46 1 1 79 119 199 7.81e-14 65.9
Msa0668340 MtrunA17_Chr4g0006931 31.915 141 85 4 1 136 145 279 9.35e-14 66.6
Msa0668340 MtrunA17_Chr2g0293591 49.231 65 33 0 1 65 841 905 1.31e-13 67.4
Msa0668340 MtrunA17_Chr2g0298641 54.902 51 23 0 1 51 38 88 1.32e-13 62.8
Msa0668340 MtrunA17_Chr8g0355911 58.491 53 22 0 1 53 237 289 1.36e-13 66.6
Msa0668340 MtrunA17_Chr2g0304331 31.496 127 83 2 1 125 948 1072 1.54e-13 67.0
Msa0668340 MtrunA17_Chr1g0190571 32.168 143 72 5 1 131 622 751 1.63e-13 67.0
Msa0668340 MtrunA17_Chr5g0436581 47.692 65 34 0 1 65 203 267 2.26e-13 65.5
Msa0668340 MtrunA17_Chr3g0087631 39.815 108 60 2 1 108 849 951 2.51e-13 66.2
Msa0668340 MtrunA17_Chr4g0022071 48.276 58 30 0 1 58 290 347 2.74e-13 65.9
Msa0668340 MtrunA17_Chr6g0465211 34.848 132 76 4 1 128 958 1083 2.95e-13 66.2
Msa0668340 MtrunA17_Chr8g0345561 46.154 65 35 0 1 65 639 703 5.20e-13 65.5
Msa0668340 MtrunA17_Chr8g0380831 30.952 168 94 5 1 154 734 893 6.67e-13 65.1
Msa0668340 MtrunA17_Chr1g0197941 32.743 113 74 1 16 128 1 111 7.56e-13 61.6
Msa0668340 MtrunA17_Chr6g0464821 32.919 161 81 5 1 137 175 332 1.28e-12 63.9
Msa0668340 MtrunA17_Chr2g0283921 30.973 113 67 3 1 108 749 855 2.71e-12 63.5
Msa0668340 MtrunA17_Chr1g0203251 32.331 133 85 2 1 128 1012 1144 3.28e-12 63.2
Msa0668340 MtrunA17_Chr4g0018701 35.780 109 67 1 1 109 563 668 4.38e-12 62.8
Msa0668340 MtrunA17_Chr6g0455691 33.333 129 82 3 2 128 769 895 6.93e-12 62.4
Msa0668340 MtrunA17_Chr2g0291771 43.056 72 41 0 1 72 540 611 7.27e-12 62.0
Msa0668340 MtrunA17_Chr6g0463301 41.250 80 46 1 1 80 970 1048 7.45e-12 62.0
Msa0668340 MtrunA17_Chr2g0284191 50.000 60 30 0 1 60 429 488 1.09e-11 61.6
Msa0668340 MtrunA17_Chr8g0375511 32.773 119 73 3 2 119 666 778 1.21e-11 61.6
Msa0668340 MtrunA17_Chr4g0050731 42.623 61 35 0 1 61 23 83 1.42e-11 57.4
Msa0668340 MtrunA17_Chr2g0284121 50.000 60 30 0 1 60 795 854 1.52e-11 61.2
Msa0668340 MtrunA17_Chr4g0006901 28.261 138 90 2 1 134 568 700 1.57e-11 61.2
Msa0668340 MtrunA17_Chr7g0241441 31.655 139 89 3 1 133 1032 1170 1.58e-11 61.2
Msa0668340 MtrunA17_Chr6g0465131 35.115 131 79 5 1 129 986 1112 2.30e-11 60.8
Msa0668340 MtrunA17_Chr8g0372861 32.743 113 65 3 1 108 749 855 2.32e-11 60.8
Msa0668340 MtrunA17_Chr2g0304981 43.056 72 41 0 1 72 551 622 3.08e-11 60.5
Msa0668340 MtrunA17_Chr3g0095201 51.724 58 28 0 1 58 571 628 3.94e-11 60.1
Msa0668340 MtrunA17_Chr8g0351951 45.902 61 33 0 1 61 302 362 4.63e-11 59.7
Msa0668340 MtrunA17_Chr2g0329021 44.262 61 34 0 1 61 309 369 5.18e-11 59.3
Msa0668340 MtrunA17_Chr5g0409041 43.056 72 41 0 1 72 150 221 5.65e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0668340 AT2G33030.1 40.945 127 69 3 1 125 88 210 3.76e-20 83.2
Msa0668340 AT3G24982.1 37.600 125 77 1 1 125 786 909 1.95e-18 81.6
Msa0668340 AT3G05660.1 38.583 127 69 4 1 125 740 859 3.00e-18 80.9
Msa0668340 AT2G33020.1 41.732 127 66 4 1 125 742 862 3.60e-18 80.9
Msa0668340 AT2G32660.1 40.678 118 61 2 1 116 460 570 5.23e-18 80.1
Msa0668340 AT2G32660.2 40.678 118 61 2 1 116 642 752 7.45e-18 79.7
Msa0668340 AT3G25020.1 38.583 127 69 2 1 118 753 879 1.05e-17 79.3
Msa0668340 AT2G33060.1 39.370 127 66 4 1 125 655 772 1.64e-17 79.0
Msa0668340 AT3G24900.1 58.462 65 27 0 1 65 755 819 4.57e-17 77.4
Msa0668340 AT3G24900.2 58.462 65 27 0 1 65 786 850 4.72e-17 77.4
Msa0668340 AT5G40170.1 36.364 121 77 0 1 121 667 787 5.63e-17 77.4
Msa0668340 AT2G32680.1 52.000 75 33 1 1 75 753 824 7.70e-17 77.0
Msa0668340 AT3G25010.1 38.462 130 64 3 1 118 754 879 1.54e-16 75.9
Msa0668340 AT3G25010.2 38.462 130 64 3 1 118 785 910 2.03e-16 75.9
Msa0668340 AT4G13920.1 56.923 65 28 0 1 65 766 830 2.01e-15 72.8
Msa0668340 AT2G25440.1 37.405 131 68 3 1 125 542 664 5.21e-15 71.6
Msa0668340 AT2G33050.1 53.846 65 30 0 1 65 645 709 5.45e-15 71.6
Msa0668340 AT1G07390.5 43.373 83 44 1 1 83 902 981 6.37e-15 71.2
Msa0668340 AT1G07390.4 43.373 83 44 1 1 83 931 1010 7.10e-15 71.2
Msa0668340 AT1G07390.3 43.373 83 44 1 1 83 937 1016 7.24e-15 71.2
Msa0668340 AT4G13880.1 53.846 65 30 0 1 65 608 672 7.39e-15 71.2
Msa0668340 AT1G07390.1 43.373 83 44 1 1 83 888 967 7.42e-15 71.2
Msa0668340 AT1G07390.2 43.373 83 44 1 1 83 767 846 8.22e-15 71.2
Msa0668340 AT2G15080.1 45.679 81 41 1 1 81 847 924 1.46e-14 70.5
Msa0668340 AT2G15080.2 45.679 81 41 1 1 81 847 924 1.46e-14 70.5
Msa0668340 AT4G13810.1 38.583 127 71 4 1 125 405 526 2.54e-14 69.7
Msa0668340 AT4G13810.2 38.583 127 71 4 1 125 581 702 2.65e-14 69.7
Msa0668340 AT4G13810.3 38.583 127 71 4 1 125 499 620 3.82e-14 68.9
Msa0668340 AT3G05650.1 37.500 120 67 2 1 116 729 844 1.25e-13 67.8
Msa0668340 AT3G11080.2 50.746 67 33 0 1 67 807 873 2.65e-13 66.6
Msa0668340 AT3G11080.1 50.746 67 33 0 1 67 807 873 2.65e-13 66.6
Msa0668340 AT2G25470.1 34.848 132 80 4 1 129 799 927 3.03e-13 66.6
Msa0668340 AT2G25470.3 34.848 132 80 4 1 129 842 970 3.48e-13 66.2
Msa0668340 AT2G15042.1 35.345 116 69 3 1 113 290 402 9.28e-13 65.1
Msa0668340 AT5G12940.1 44.444 63 35 0 1 63 306 368 9.71e-13 64.7
Msa0668340 AT1G47890.1 50.769 65 32 0 1 65 884 948 1.02e-12 65.1
Msa0668340 AT5G49290.7 33.083 133 81 3 1 129 744 872 1.08e-12 65.1
Msa0668340 AT3G12610.1 46.154 65 35 0 1 65 308 372 1.09e-12 64.7
Msa0668340 AT5G49290.1 33.083 133 81 3 1 129 772 900 1.15e-12 65.1
Msa0668340 AT5G49290.2 33.083 133 81 3 1 129 811 939 1.16e-12 65.1
Msa0668340 AT5G49290.5 33.083 133 81 3 1 129 769 897 1.18e-12 64.7
Msa0668340 AT5G49290.4 33.083 133 81 3 1 129 797 925 1.21e-12 64.7
Msa0668340 AT5G49290.6 33.083 133 81 3 1 129 797 925 1.21e-12 64.7
Msa0668340 AT5G49290.8 33.083 133 81 3 1 129 797 925 1.21e-12 64.7
Msa0668340 AT1G55610.1 34.146 123 72 3 1 123 692 805 1.30e-12 64.7
Msa0668340 AT1G55610.2 34.146 123 72 3 1 123 692 805 1.30e-12 64.7
Msa0668340 AT5G27060.2 39.048 105 59 1 1 105 820 919 1.42e-12 64.7
Msa0668340 AT5G27060.3 39.048 105 59 1 1 105 819 918 1.43e-12 64.7
Msa0668340 AT5G27060.1 39.048 105 59 1 1 105 819 918 1.43e-12 64.7
Msa0668340 AT5G49290.9 33.083 133 81 3 1 129 554 682 1.73e-12 64.3
Msa0668340 AT1G45616.1 41.463 82 46 1 1 82 857 936 2.13e-12 64.3
Msa0668340 AT1G54475.1 45.455 66 36 0 1 66 73 138 2.15e-12 62.4
Msa0668340 AT1G71400.1 46.250 80 38 2 1 80 711 785 2.37e-12 63.9
Msa0668340 AT5G25910.1 40.566 106 61 1 1 106 679 782 2.83e-12 63.9
Msa0668340 AT3G11010.4 37.273 110 62 2 1 106 786 892 3.13e-12 63.5
Msa0668340 AT3G11010.3 37.273 110 62 2 1 106 795 901 3.23e-12 63.5
Msa0668340 AT3G11010.2 37.273 110 62 2 1 106 819 925 3.37e-12 63.5
Msa0668340 AT3G11010.5 37.273 110 62 2 1 106 732 838 3.85e-12 63.5
Msa0668340 AT3G11010.6 37.273 110 62 2 1 106 723 829 3.95e-12 63.2
Msa0668340 AT3G11010.1 37.273 110 62 2 1 106 756 862 4.17e-12 63.2
Msa0668340 AT1G71390.2 46.341 82 39 2 1 82 656 732 5.75e-12 62.8
Msa0668340 AT3G20820.1 47.541 61 32 0 1 61 299 359 6.02e-12 62.4
Msa0668340 AT1G71390.1 41.121 107 57 3 1 107 651 751 6.38e-12 62.8
Msa0668340 AT1G74180.1 46.970 66 35 0 1 66 836 901 9.00e-12 62.4
Msa0668340 AT1G74180.2 46.970 66 35 0 1 66 822 887 9.33e-12 62.4
Msa0668340 AT1G17250.1 35.577 104 62 2 1 104 638 736 1.32e-11 62.0
Msa0668340 AT1G72300.1 46.970 66 35 0 1 66 634 699 1.75e-11 61.6
Msa0668340 AT3G28890.1 47.761 67 35 0 1 67 573 639 2.14e-11 61.2
Msa0668340 AT3G28890.2 47.761 67 35 0 1 67 573 639 2.14e-11 61.2
Msa0668340 AT2G01950.1 38.542 96 56 3 2 96 665 758 3.37e-11 60.8
Msa0668340 AT3G13380.1 32.031 128 67 4 1 123 692 804 3.98e-11 60.5
Msa0668340 AT4G28650.1 29.365 126 71 3 1 122 553 664 4.45e-11 60.5
Msa0668340 AT3G56100.2 32.520 123 79 2 1 123 286 404 5.58e-11 60.1
Msa0668340 AT1G12460.1 43.056 72 41 0 1 72 433 504 9.10e-11 59.3
Msa0668340 AT3G23120.1 37.963 108 61 4 1 107 662 764 9.69e-11 59.3

Find 52 sgRNAs with CRISPR-Local

Find 56 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGCAGTTCATCCACAATTT+TGG 0.170380 4_4:+9296739 None:intergenic
TCCATTTCATCAAGCAAATA+AGG 0.209136 4_4:+9296774 None:intergenic
TTGTGGATGAACTGCTTTAC+AGG 0.218150 4_4:-9296733 Msa0668340:CDS
CCCTTATTTGCTTGATGAAA+TGG 0.263576 4_4:-9296775 Msa0668340:CDS
CCTCGTGGGGCGAATTCCTT+TGG 0.277690 4_4:-9297011 Msa0668340:CDS
ATAATGACAGTTCAATTGAT+TGG 0.367970 4_4:-9296853 Msa0668340:CDS
TAACCCTTCATTCCCTTTGA+AGG 0.382589 4_4:+9296958 None:intergenic
GAATTTCTTAATTGTGGAGT+TGG 0.394259 4_4:-9296831 Msa0668340:CDS
TCCACCATCTTCGCAATTGT+TGG 0.399728 4_4:+9296919 None:intergenic
CCATTTCATCAAGCAAATAA+GGG 0.400422 4_4:+9296775 None:intergenic
AATTTCTTAATTGTGGAGTT+GGG 0.408349 4_4:-9296830 Msa0668340:CDS
CTCGTGGGGCGAATTCCTTT+GGG 0.441264 4_4:-9297010 Msa0668340:CDS
TTGTCAAACAACTCCTTGAA+TGG 0.449084 4_4:-9297097 Msa0668340:CDS
TGATTGGAATTTCTTAATTG+TGG 0.449932 4_4:-9296837 Msa0668340:CDS
TTTGATGTAGATTCCTTCAA+AGG 0.453800 4_4:-9296971 Msa0668340:CDS
CTGACCAACAATTGCGAAGA+TGG 0.454524 4_4:-9296923 Msa0668340:CDS
TTGAGGGATCTCTCCATTCA+AGG 0.458323 4_4:+9297084 None:intergenic
CTCTCGTTCAATCACCTCGT+GGG 0.464167 4_4:-9297025 Msa0668340:CDS
GTTCATACACAAAATCTAGC+TGG 0.464312 4_4:+9296702 None:intergenic
GATTCCTTCAAAGGGAATGA+AGG 0.472092 4_4:-9296962 Msa0668340:CDS
GGAAGTGGTATAGATCTCTA+AGG 0.475567 4_4:-9296673 Msa0668340:CDS
ATAGACTTGAAACCTCTTGA+GGG 0.492520 4_4:+9297068 None:intergenic
TGCGAAGATGGTGGAGTGCA+AGG 0.493245 4_4:-9296911 Msa0668340:CDS
TTGATGTAGATTCCTTCAAA+GGG 0.509784 4_4:-9296970 Msa0668340:CDS
TTCATACACAAAATCTAGCT+GGG 0.510816 4_4:+9296703 None:intergenic
GCTTGATGAAATGGAGGTTG+TGG 0.528939 4_4:-9296766 Msa0668340:CDS
AAAGGGAATGAAGGGTTATG+TGG 0.535442 4_4:-9296953 Msa0668340:CDS
ATTCCTTCAAAGGGAATGAA+GGG 0.553042 4_4:-9296961 Msa0668340:CDS
CAATGAGATAACTCGGATGC+TGG 0.568551 4_4:+9296878 None:intergenic
TGTATGAACATCAAGGGAAG+TGG 0.570668 4_4:-9296688 Msa0668340:CDS
CCTCTCGTTCAATCACCTCG+TGG 0.578922 4_4:-9297026 Msa0668340:CDS
GGTATAGATCTCTAAGGTGG+AGG 0.584129 4_4:-9296667 Msa0668340:CDS
TCTTCGCAATTGTTGGTCAG+TGG 0.589264 4_4:+9296926 None:intergenic
ACGAGAGGTTCATATATGCT+AGG 0.591479 4_4:+9297041 None:intergenic
TTATTTGCTTGATGAAATGG+AGG 0.592048 4_4:-9296772 Msa0668340:CDS
GATAGACTTGAAACCTCTTG+AGG 0.592770 4_4:+9297067 None:intergenic
GTTGTGGTATTCCAAAATTG+TGG 0.616597 4_4:-9296750 Msa0668340:CDS
GAATGGAGAGATCCCTCAAG+AGG 0.618045 4_4:-9297080 Msa0668340:CDS
CCACGAGGTGATTGAACGAG+AGG 0.618522 4_4:+9297026 None:intergenic
CATTTCATCAAGCAAATAAG+GGG 0.622262 4_4:+9296776 None:intergenic
TCTCGTTCAATCACCTCGTG+GGG 0.635804 4_4:-9297024 Msa0668340:CDS
GATAACTCGGATGCTGGTGG+TGG 0.637076 4_4:+9296884 None:intergenic
ACCAACAATTGCGAAGATGG+TGG 0.638983 4_4:-9296920 Msa0668340:CDS
GATTGAATTTGAGTACCCAA+AGG 0.641617 4_4:+9296995 None:intergenic
ATTATGACAATGAGATAACT+CGG 0.646517 4_4:+9296871 None:intergenic
TCATACACAAAATCTAGCTG+GGG 0.648620 4_4:+9296704 None:intergenic
AGTGGTATAGATCTCTAAGG+TGG 0.653328 4_4:-9296670 Msa0668340:CDS
GCGAAGATGGTGGAGTGCAA+GGG 0.663683 4_4:-9296910 Msa0668340:CDS
CCAAAGGAATTCGCCCCACG+AGG 0.669940 4_4:+9297011 None:intergenic
CATACACAAAATCTAGCTGG+GGG 0.698899 4_4:+9296705 None:intergenic
ATTTCATCAAGCAAATAAGG+GGG 0.719853 4_4:+9296777 None:intergenic
TGAGATAACTCGGATGCTGG+TGG 0.720712 4_4:+9296881 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ATTATGACAATGAGATAACT+CGG + chr4_4:9296896-9296915 None:intergenic 25.0%
! ATAATGACAGTTCAATTGAT+TGG - chr4_4:9296911-9296930 Msa0668340:CDS 25.0%
! TGATTGGAATTTCTTAATTG+TGG - chr4_4:9296927-9296946 Msa0668340:CDS 25.0%
! AATTTCTTAATTGTGGAGTT+GGG - chr4_4:9296934-9296953 Msa0668340:CDS 25.0%
!! ATTTTGTGTATGAACATCAA+GGG - chr4_4:9297070-9297089 Msa0668340:CDS 25.0%
TTTGATGTAGATTCCTTCAA+AGG - chr4_4:9296793-9296812 Msa0668340:CDS 30.0%
TTGATGTAGATTCCTTCAAA+GGG - chr4_4:9296794-9296813 Msa0668340:CDS 30.0%
GAATTTCTTAATTGTGGAGT+TGG - chr4_4:9296933-9296952 Msa0668340:CDS 30.0%
!!! TTGGGATATATTTTTGGCTT+TGG - chr4_4:9296952-9296971 Msa0668340:CDS 30.0%
ATTTCATCAAGCAAATAAGG+GGG + chr4_4:9296990-9297009 None:intergenic 30.0%
CATTTCATCAAGCAAATAAG+GGG + chr4_4:9296991-9297010 None:intergenic 30.0%
CCATTTCATCAAGCAAATAA+GGG + chr4_4:9296992-9297011 None:intergenic 30.0%
TCCATTTCATCAAGCAAATA+AGG + chr4_4:9296993-9297012 None:intergenic 30.0%
TTATTTGCTTGATGAAATGG+AGG - chr4_4:9296992-9297011 Msa0668340:CDS 30.0%
TTCATACACAAAATCTAGCT+GGG + chr4_4:9297064-9297083 None:intergenic 30.0%
! GATTTTGTGTATGAACATCA+AGG - chr4_4:9297069-9297088 Msa0668340:CDS 30.0%
TTGTCAAACAACTCCTTGAA+TGG - chr4_4:9296667-9296686 Msa0668340:CDS 35.0%
ATAGACTTGAAACCTCTTGA+GGG + chr4_4:9296699-9296718 None:intergenic 35.0%
GATTGAATTTGAGTACCCAA+AGG + chr4_4:9296772-9296791 None:intergenic 35.0%
ATTCCTTCAAAGGGAATGAA+GGG - chr4_4:9296803-9296822 Msa0668340:CDS 35.0%
! GTGGAGTTGGGATATATTTT+TGG - chr4_4:9296946-9296965 Msa0668340:CDS 35.0%
! CCCTTATTTGCTTGATGAAA+TGG - chr4_4:9296989-9297008 Msa0668340:CDS 35.0%
GTTGTGGTATTCCAAAATTG+TGG - chr4_4:9297014-9297033 Msa0668340:CDS 35.0%
! AAGCAGTTCATCCACAATTT+TGG + chr4_4:9297028-9297047 None:intergenic 35.0%
TCATACACAAAATCTAGCTG+GGG + chr4_4:9297063-9297082 None:intergenic 35.0%
GTTCATACACAAAATCTAGC+TGG + chr4_4:9297065-9297084 None:intergenic 35.0%
GATAGACTTGAAACCTCTTG+AGG + chr4_4:9296700-9296719 None:intergenic 40.0%
ACGAGAGGTTCATATATGCT+AGG + chr4_4:9296726-9296745 None:intergenic 40.0%
GATTCCTTCAAAGGGAATGA+AGG - chr4_4:9296802-9296821 Msa0668340:CDS 40.0%
TAACCCTTCATTCCCTTTGA+AGG + chr4_4:9296809-9296828 None:intergenic 40.0%
AAAGGGAATGAAGGGTTATG+TGG - chr4_4:9296811-9296830 Msa0668340:CDS 40.0%
TTGTGGATGAACTGCTTTAC+AGG - chr4_4:9297031-9297050 Msa0668340:CDS 40.0%
CATACACAAAATCTAGCTGG+GGG + chr4_4:9297062-9297081 None:intergenic 40.0%
TGTATGAACATCAAGGGAAG+TGG - chr4_4:9297076-9297095 Msa0668340:CDS 40.0%
GGAAGTGGTATAGATCTCTA+AGG - chr4_4:9297091-9297110 Msa0668340:CDS 40.0%
! AGTGGTATAGATCTCTAAGG+TGG - chr4_4:9297094-9297113 Msa0668340:CDS 40.0%
TTGAGGGATCTCTCCATTCA+AGG + chr4_4:9296683-9296702 None:intergenic 45.0%
TCTTCGCAATTGTTGGTCAG+TGG + chr4_4:9296841-9296860 None:intergenic 45.0%
CTGACCAACAATTGCGAAGA+TGG - chr4_4:9296841-9296860 Msa0668340:CDS 45.0%
ACCAACAATTGCGAAGATGG+TGG - chr4_4:9296844-9296863 Msa0668340:CDS 45.0%
TCCACCATCTTCGCAATTGT+TGG + chr4_4:9296848-9296867 None:intergenic 45.0%
CAATGAGATAACTCGGATGC+TGG + chr4_4:9296889-9296908 None:intergenic 45.0%
GCTTGATGAAATGGAGGTTG+TGG - chr4_4:9296998-9297017 Msa0668340:CDS 45.0%
!! GGTATAGATCTCTAAGGTGG+AGG - chr4_4:9297097-9297116 Msa0668340:CDS 45.0%
GAATGGAGAGATCCCTCAAG+AGG - chr4_4:9296684-9296703 Msa0668340:CDS 50.0%
CTCTCGTTCAATCACCTCGT+GGG - chr4_4:9296739-9296758 Msa0668340:CDS 50.0%
TCTCGTTCAATCACCTCGTG+GGG - chr4_4:9296740-9296759 Msa0668340:CDS 50.0%
TGAGATAACTCGGATGCTGG+TGG + chr4_4:9296886-9296905 None:intergenic 50.0%
CCACGAGGTGATTGAACGAG+AGG + chr4_4:9296741-9296760 None:intergenic 55.0%
CCTCTCGTTCAATCACCTCG+TGG - chr4_4:9296738-9296757 Msa0668340:CDS 55.0%
CTCGTGGGGCGAATTCCTTT+GGG - chr4_4:9296754-9296773 Msa0668340:CDS 55.0%
!! TGCGAAGATGGTGGAGTGCA+AGG - chr4_4:9296853-9296872 Msa0668340:CDS 55.0%
!! GCGAAGATGGTGGAGTGCAA+GGG - chr4_4:9296854-9296873 Msa0668340:CDS 55.0%
GATAACTCGGATGCTGGTGG+TGG + chr4_4:9296883-9296902 None:intergenic 55.0%
CCAAAGGAATTCGCCCCACG+AGG + chr4_4:9296756-9296775 None:intergenic 60.0%
CCTCGTGGGGCGAATTCCTT+TGG - chr4_4:9296753-9296772 Msa0668340:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 9296661 9297125 9296661 ID=Msa0668340;Name=Msa0668340
chr4_4 mRNA 9296661 9297125 9296661 ID=Msa0668340-mRNA-1;Parent=Msa0668340;Name=Msa0668340-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0|-1|0|1|-1|1|1|0|154
chr4_4 exon 9296661 9297125 9296661 ID=Msa0668340-mRNA-1:exon:2993;Parent=Msa0668340-mRNA-1
chr4_4 CDS 9296661 9297125 9296661 ID=Msa0668340-mRNA-1:cds;Parent=Msa0668340-mRNA-1
Gene Sequence

>Msa0668340

ATGGACTTGTCAAACAACTCCTTGAATGGAGAGATCCCTCAAGAGGTTTCAAGTCTATCTTTCCTAGCATATATGAACCTCTCGTTCAATCACCTCGTGGGGCGAATTCCTTTGGGTACTCAAATTCAATCATTTGATGTAGATTCCTTCAAAGGGAATGAAGGGTTATGTGGACTTCCACTGACCAACAATTGCGAAGATGGTGGAGTGCAAGGGCTGCCACCACCAGCATCCGAGTTATCTCATTGTCATAATGACAGTTCAATTGATTGGAATTTCTTAATTGTGGAGTTGGGATATATTTTTGGCTTTGGAATTTTCATTCTCCCCCTTATTTGCTTGATGAAATGGAGGTTGTGGTATTCCAAAATTGTGGATGAACTGCTTTACAGGTTCATCCCCCAGCTAGATTTTGTGTATGAACATCAAGGGAAGTGGTATAGATCTCTAAGGTGGAGGTATTAG
Protein sequence

>Msa0668340

MDLSNNSLNGEIPQEVSSLSFLAYMNLSFNHLVGRIPLGTQIQSFDVDSFKGNEGLCGLPLTNNCEDGGVQGLPPPASELSHCHNDSSIDWNFLIVELGYIFGFGIFILPLICLMKWRLWYSKIVDELLYRFIPQLDFVYEHQGKWYRSLRWRY*