AlfalfaGEDB | Msa0677420

M. sativa cultivar zhongmu-4 / Msa0677420

KEGG: -
GO: -
PFAM: PF13476.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0677420	XP_013455406.1	91.219	558	12	3	2	522	56	613	0.0	1029

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0677420	sp\|Q9FLR5\|SMC6A_ARATH	54.821	560	214	5	2	522	54	613	0.0	620

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0677420	A0A072UIF4	91.219	558	12	3	2	522	56	613	0.0	1029

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0604340	Msa0677420	0.890068	1.375259e-73	-8.615850e-47
Msa0636130	Msa0677420	0.882360	1.112517e-70	-8.615850e-47
Msa0636160	Msa0677420	0.878952	1.851478e-69	-8.615850e-47
Msa0677420	Msa1443600	0.804739	1.869457e-49	-8.615850e-47

Showing 1 to 4 of 4 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0677420	MtrunA17_Chr4g0018851	91.219	558	12	3	2	522	56	613	0.0	1029
Msa0677420	MtrunA17_Chr4g0030081	76.344	558	95	3	2	522	55	612	0.0	835

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0677420	AT5G07660.1	54.821	560	214	5	2	522	54	613	0.0	620
Msa0677420	AT5G61460.1	56.964	560	202	5	2	522	53	612	0.0	607

Showing 1 to 2 of 2 entries

Previous1Next

Find 90 sgRNAs with CRISPR-Local

Find 632 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAACTTGCATGGTCA+TGG	0.425831	4_4:+30969909	Msa0677420:CDS
AAAGAAACTTGCATGGTCAT+GGG	0.520535	4_4:+30969910	Msa0677420:CDS
AAATAACAAAGATAAATTTA+AGG	0.322875	4_4:+30969619	Msa0677420:CDS
AAATCAAAACCTATCCAATT+CGG	0.451467	4_4:-30972701	None:intergenic
AAATTGAAAAGCTGAAGAAT+CGG	0.528467	4_4:+30969972	Msa0677420:CDS
AAGCCTCCCATTGGTCCAAT+TGG	0.417367	4_4:+30973992	Msa0677420:CDS
AAGGAGGTCTTCGCTGTGGA+TGG	0.536962	4_4:+30975840	Msa0677420:CDS
AAGGATCCGAAATTTGAAGG+AGG	0.689328	4_4:+30975824	Msa0677420:CDS
AAGGCTTGAAGTACGAATGC+AGG	0.545965	4_4:+30972393	Msa0677420:CDS
AATACTTACTGCATTGTGTG+TGG	0.586273	4_4:+30966721	Msa0677420:CDS

Showing 1 to 10 of 90 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAATCAAAGGTAGTCTGAT+TGG	+	chr4_4:30965747-30965766	Msa0677420:intron	30.0%
AAAACATGGTTTAGGCTAAA+AGG	-	chr4_4:30965821-30965840	None:intergenic	30.0%
GGGACATAATTCATATGAAT+TGG	+	chr4_4:30966121-30966140	Msa0677420:intron	30.0%
TTTAAGTGCTTTACACTGAT+GGG	+	chr4_4:30966532-30966551	Msa0677420:intron	30.0%
CTAATGAATCTGTGTTTGTT+TGG	+	chr4_4:30966670-30966689	Msa0677420:intron	30.0%
ACTATGTAAACACATTATGG+TGG	-	chr4_4:30967100-30967119	None:intergenic	30.0%
TGAAATTCAAAATGAAGGAG+AGG	+	chr4_4:30967163-30967182	Msa0677420:CDS	30.0%
ATGTTATCATTGTAGAACGT+AGG	+	chr4_4:30967213-30967232	Msa0677420:CDS	30.0%
GAAACAATGGAAAAGTTACA+AGG	+	chr4_4:30967332-30967351	Msa0677420:intron	30.0%
TGAAAAAGTTGAATTAGCAC+AGG	+	chr4_4:30967527-30967546	Msa0677420:intron	30.0%

Showing 1 to 10 of 632 entries

Previous1 2 3 4 5…64Next

Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	30965503	30975875	30965503	ID=Msa0677420;Name=Msa0677420
chr4_4	mRNA	30965503	30975875	30965503	ID=Msa0677420-mRNA-1;Parent=Msa0677420;Name=Msa0677420-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0\|0.07\|0\|0.93\|0.78\|0.73\|15\|0\|522
chr4_4	exon	30965503	30965506	30965503	ID=Msa0677420-mRNA-1:exon:7729;Parent=Msa0677420-mRNA-1
chr4_4	exon	30966708	30966813	30966708	ID=Msa0677420-mRNA-1:exon:7730;Parent=Msa0677420-mRNA-1
chr4_4	exon	30967145	30967278	30967145	ID=Msa0677420-mRNA-1:exon:7731;Parent=Msa0677420-mRNA-1
chr4_4	exon	30969117	30969172	30969117	ID=Msa0677420-mRNA-1:exon:7732;Parent=Msa0677420-mRNA-1
chr4_4	exon	30969554	30969640	30969554	ID=Msa0677420-mRNA-1:exon:7733;Parent=Msa0677420-mRNA-1
chr4_4	exon	30969710	30969874	30969710	ID=Msa0677420-mRNA-1:exon:7734;Parent=Msa0677420-mRNA-1
chr4_4	exon	30969896	30970030	30969896	ID=Msa0677420-mRNA-1:exon:7735;Parent=Msa0677420-mRNA-1
chr4_4	exon	30970993	30971106	30970993	ID=Msa0677420-mRNA-1:exon:7736;Parent=Msa0677420-mRNA-1
chr4_4	exon	30972313	30972447	30972313	ID=Msa0677420-mRNA-1:exon:7737;Parent=Msa0677420-mRNA-1
chr4_4	exon	30972637	30972713	30972637	ID=Msa0677420-mRNA-1:exon:7738;Parent=Msa0677420-mRNA-1
chr4_4	exon	30972808	30972883	30972808	ID=Msa0677420-mRNA-1:exon:7739;Parent=Msa0677420-mRNA-1
chr4_4	exon	30973920	30974024	30973920	ID=Msa0677420-mRNA-1:exon:7740;Parent=Msa0677420-mRNA-1
chr4_4	exon	30974587	30974756	30974587	ID=Msa0677420-mRNA-1:exon:7741;Parent=Msa0677420-mRNA-1
chr4_4	exon	30974877	30974964	30974877	ID=Msa0677420-mRNA-1:exon:7742;Parent=Msa0677420-mRNA-1
chr4_4	exon	30975759	30975875	30975759	ID=Msa0677420-mRNA-1:exon:7743;Parent=Msa0677420-mRNA-1
chr4_4	CDS	30965503	30965506	30965503	ID=Msa0677420-mRNA-1:cds;Parent=Msa0677420-mRNA-1
chr4_4	CDS	30966708	30966813	30966708	ID=Msa0677420-mRNA-1:cds;Parent=Msa0677420-mRNA-1
chr4_4	CDS	30967145	30967278	30967145	ID=Msa0677420-mRNA-1:cds;Parent=Msa0677420-mRNA-1
chr4_4	CDS	30969117	30969172	30969117	ID=Msa0677420-mRNA-1:cds;Parent=Msa0677420-mRNA-1
chr4_4	CDS	30969554	30969640	30969554	ID=Msa0677420-mRNA-1:cds;Parent=Msa0677420-mRNA-1
chr4_4	CDS	30969710	30969874	30969710	ID=Msa0677420-mRNA-1:cds;Parent=Msa0677420-mRNA-1
chr4_4	CDS	30969896	30970030	30969896	ID=Msa0677420-mRNA-1:cds;Parent=Msa0677420-mRNA-1
chr4_4	CDS	30970993	30971106	30970993	ID=Msa0677420-mRNA-1:cds;Parent=Msa0677420-mRNA-1
chr4_4	CDS	30972313	30972447	30972313	ID=Msa0677420-mRNA-1:cds;Parent=Msa0677420-mRNA-1
chr4_4	CDS	30972637	30972713	30972637	ID=Msa0677420-mRNA-1:cds;Parent=Msa0677420-mRNA-1
chr4_4	CDS	30972808	30972883	30972808	ID=Msa0677420-mRNA-1:cds;Parent=Msa0677420-mRNA-1
chr4_4	CDS	30973920	30974024	30973920	ID=Msa0677420-mRNA-1:cds;Parent=Msa0677420-mRNA-1
chr4_4	CDS	30974587	30974756	30974587	ID=Msa0677420-mRNA-1:cds;Parent=Msa0677420-mRNA-1
chr4_4	CDS	30974877	30974964	30974877	ID=Msa0677420-mRNA-1:cds;Parent=Msa0677420-mRNA-1
chr4_4	CDS	30975759	30975875	30975759	ID=Msa0677420-mRNA-1:cds;Parent=Msa0677420-mRNA-1

Gene Sequence

>Msa0677420

ATGGGTGGTAAAAGTGCAATACTTACTGCATTGTGTGTGGCTTTTGGATGTCGAGCTAAAGGCACTCAAAGAGCATCTACTTTGAAGGATTTCATTAAAACCGGTGCTAGTAATGCTGTCATTCATGTTGAAATTCAAAATGAAGGAGAGGATGCTTTCAAGCCTGATATATATGGTGATGTTATCATTGTAGAACGTAGGATATCCGAATCCGCAAGCTCCATTACCTTGAAAGATCACCAAGGAAAGAAAGTTTGCACCCGGAAAGCAGATCTTCAGGAAATCATTGAACATTTCAATATTGATGTGGAGAATCCATGCGTGATTATGAGTCAAGACAAAAGCAGAGAATTTTTGCATTCTGGAAATAACAAAGATAAATTTAAGTTCTTCTACAAGGCCACACTTCTTCAGCAAGTCAATGATCTTCTGGAAAGCATTTCCATTGAAACAACTACTGCACGTGGAATAGTTGACGAATTAGAGTCTTCAATAAGACCTATAGAGAAGGAGCTTAACGAGCTGCAGAATAAAATTAAAACGATGGAACACGTTGAGCAGTTAAAAAAGAAACTTGCATGGTCATGGGTTTATGACGTGGACAAGAAACTTGAGGAACAAAATGTAAAAATTGAAAAGCTGAAGAATCGGATTCCTACCTGCCAAGCTAAGATTGATAAACAACTGCATCTGCTTGAAAAATTAAGTGAAAACTGTTCTAACAAGAAAGCTGAAATTAAAAGTATGATGACATCACAAGTCAAGCAAATGAAGGAAAGTTTAAGTCGCTCTATGTCCTTGGCAAACAAAGAAGCATACGAGCTTCAGCGAGACTGCAAATACAAAATTAGTGACATACAGAAGATGGCACAACAGTTGAAAAGGCTTGAAGTACGAATGCAGGATATTCATGAGCAGAATGTGAAAAATACCCAGGCTGAAGAATCTGACATGGAGGAAAAACTGAAGGGGCTTCGAGATGAGGTTGATCATGCTAAGTCCGAATTGGATAGATTGAAAGAAGAAGAGGAGACGTTAATAAACAACAAAAATAGGCAAAAAGATGAAATCAAAAGGATTGATGATGAGACCACAGCTTTTGGAGGAAACAAAGTGCTTAATCTCTTGCATAATATTGAGAGATGTCATCAAAGGTTTAAGAAGCCTCCCATTGGTCCAATTGGTGCCCATCTGAAGTTGCTTAATGGTAATAAATGGGCGGTTGCTGTTGAACATGCCATTGGGAGAATGCTCAATTCCTTTATAGTGACTGATCACAAGGATTTCCGTCTTTTGAAACAATGTGCGAAGGAAGCAAACTACGGTCATCTTCAAATTATTATTTATGATTTTTCAACCCCAAGGTTGACGCTACCAGAAGACATGCTTCCTAATACAAACCATCCATCAATTCTTTCCGTCTTACAATGCGATAATCACACTGTGTTCAATGGAAATGTTGAGAGACAAGTGCTTGTTAACGACTATAATACCGGGAAGGTTGTTGCCTTTGAACAAAGGATCCGAAATTTGAAGGAGGTCTTCGCTGTGGATGGTTGTAAAATGTAA

Protein sequence

>Msa0677420

MGGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGASNAVIHVEIQNEGEDAFKPDIYGDVIIVERRISESASSITLKDHQGKKVCTRKADLQEIIEHFNIDVENPCVIMSQDKSREFLHSGNNKDKFKFFYKATLLQQVNDLLESISIETTTARGIVDELESSIRPIEKELNELQNKIKTMEHVEQLKKKLAWSWVYDVDKKLEEQNVKIEKLKNRIPTCQAKIDKQLHLLEKLSENCSNKKAEIKSMMTSQVKQMKESLSRSMSLANKEAYELQRDCKYKISDIQKMAQQLKRLEVRMQDIHEQNVKNTQAEESDMEEKLKGLRDEVDHAKSELDRLKEEEETLINNKNRQKDEIKRIDDETTAFGGNKVLNLLHNIERCHQRFKKPPIGPIGAHLKLLNGNKWAVAVEHAIGRMLNSFIVTDHKDFRLLKQCAKEANYGHLQIIIYDFSTPRLTLPEDMLPNTNHPSILSVLQCDNHTVFNGNVERQVLVNDYNTGKVVAFEQRIRNLKEVFAVDGCKM*