Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0679330 | XP_003605980.1 | 99.279 | 416 | 2 | 1 | 1 | 415 | 1 | 416 | 0.0 | 847 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0679330 | sp|Q04960|DNJH_CUCSA | 86.364 | 418 | 49 | 4 | 1 | 415 | 1 | 413 | 0.0 | 680 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0679330 | G7JES3 | 99.279 | 416 | 2 | 1 | 1 | 415 | 1 | 416 | 0.0 | 847 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0416040 | Msa0679330 | 0.802040 | 6.775212e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0679330 | MtrunA17_Chr4g0025401 | 99.279 | 416 | 2 | 1 | 1 | 415 | 1 | 416 | 0.0 | 847 |
Msa0679330 | MtrunA17_Chr2g0322181 | 88.517 | 418 | 44 | 2 | 1 | 415 | 1 | 417 | 0.0 | 696 |
Msa0679330 | MtrunA17_Chr8g0334811 | 70.213 | 423 | 118 | 5 | 1 | 415 | 1 | 423 | 0.0 | 580 |
Msa0679330 | MtrunA17_Chr7g0269841 | 38.218 | 348 | 179 | 9 | 14 | 356 | 27 | 343 | 1.08e-58 | 195 |
Msa0679330 | MtrunA17_Chr4g0040501 | 33.053 | 357 | 207 | 10 | 14 | 356 | 5 | 343 | 9.68e-49 | 169 |
Msa0679330 | MtrunA17_Chr2g0282741 | 33.520 | 358 | 199 | 10 | 14 | 356 | 5 | 338 | 3.16e-48 | 167 |
Msa0679330 | MtrunA17_Chr3g0123861 | 34.097 | 349 | 213 | 9 | 14 | 353 | 83 | 423 | 2.97e-47 | 167 |
Msa0679330 | MtrunA17_Chr2g0333221 | 31.921 | 354 | 213 | 10 | 11 | 345 | 68 | 412 | 1.20e-46 | 167 |
Msa0679330 | MtrunA17_Chr2g0324921 | 32.402 | 358 | 199 | 8 | 14 | 356 | 5 | 334 | 6.49e-46 | 161 |
Msa0679330 | MtrunA17_Chr4g0010781 | 33.903 | 351 | 190 | 11 | 14 | 345 | 87 | 414 | 3.05e-45 | 162 |
Msa0679330 | MtrunA17_Chr6g0478651 | 31.768 | 362 | 219 | 11 | 14 | 354 | 69 | 423 | 2.02e-44 | 161 |
Msa0679330 | MtrunA17_Chr2g0282761 | 34.302 | 344 | 198 | 11 | 14 | 344 | 5 | 333 | 5.00e-43 | 154 |
Msa0679330 | MtrunA17_Chr3g0138471 | 30.899 | 356 | 198 | 6 | 14 | 356 | 5 | 325 | 3.17e-41 | 148 |
Msa0679330 | MtrunA17_Chr4g0006391 | 30.905 | 398 | 156 | 12 | 14 | 356 | 5 | 338 | 1.23e-40 | 147 |
Msa0679330 | MtrunA17_Chr3g0087741 | 30.194 | 361 | 210 | 15 | 1 | 345 | 80 | 414 | 7.76e-36 | 136 |
Msa0679330 | MtrunA17_Chr5g0426951 | 27.913 | 369 | 222 | 14 | 1 | 348 | 70 | 415 | 3.95e-28 | 115 |
Msa0679330 | MtrunA17_Chr5g0415751 | 35.172 | 145 | 92 | 1 | 212 | 356 | 18 | 160 | 5.55e-27 | 105 |
Msa0679330 | MtrunA17_Chr3g0093111 | 26.064 | 376 | 177 | 12 | 14 | 356 | 3 | 310 | 9.99e-26 | 106 |
Msa0679330 | MtrunA17_Chr3g0124801 | 33.793 | 145 | 93 | 2 | 213 | 356 | 149 | 291 | 2.17e-18 | 85.1 |
Msa0679330 | MtrunA17_Chr2g0277721 | 31.250 | 144 | 98 | 1 | 213 | 356 | 117 | 259 | 2.91e-16 | 78.6 |
Msa0679330 | MtrunA17_Chr1g0209551 | 52.941 | 68 | 28 | 1 | 15 | 78 | 18 | 85 | 8.45e-14 | 72.8 |
Msa0679330 | MtrunA17_Chr8g0352451 | 46.316 | 95 | 41 | 3 | 12 | 102 | 71 | 159 | 1.48e-13 | 72.0 |
Msa0679330 | MtrunA17_Chr5g0399201 | 41.250 | 80 | 40 | 1 | 10 | 82 | 9 | 88 | 3.06e-13 | 71.2 |
Msa0679330 | MtrunA17_Chr5g0393371 | 42.105 | 95 | 45 | 3 | 12 | 102 | 5 | 93 | 5.95e-13 | 70.1 |
Msa0679330 | MtrunA17_Chr7g0263971 | 51.282 | 78 | 32 | 2 | 4 | 76 | 360 | 436 | 1.04e-12 | 69.7 |
Msa0679330 | MtrunA17_Chr1g0159511 | 42.708 | 96 | 43 | 4 | 12 | 102 | 5 | 93 | 3.06e-12 | 67.8 |
Msa0679330 | MtrunA17_Chr1g0159491 | 46.377 | 69 | 33 | 2 | 14 | 78 | 7 | 75 | 3.43e-12 | 62.0 |
Msa0679330 | MtrunA17_Chr7g0242951 | 47.692 | 65 | 31 | 1 | 15 | 76 | 29 | 93 | 1.12e-11 | 66.6 |
Msa0679330 | MtrunA17_Chr2g0307061 | 37.000 | 100 | 50 | 2 | 14 | 100 | 111 | 210 | 1.41e-11 | 65.5 |
Msa0679330 | MtrunA17_Chr5g0415731 | 33.333 | 144 | 60 | 4 | 14 | 144 | 6 | 126 | 1.44e-11 | 62.0 |
Msa0679330 | MtrunA17_Chr3g0091361 | 48.052 | 77 | 35 | 2 | 11 | 82 | 3 | 79 | 2.78e-11 | 62.8 |
Msa0679330 | MtrunA17_Chr7g0271891 | 40.000 | 75 | 37 | 1 | 14 | 80 | 17 | 91 | 4.30e-11 | 61.2 |
Msa0679330 | MtrunA17_Chr5g0414471 | 44.928 | 69 | 34 | 1 | 15 | 79 | 27 | 95 | 6.69e-11 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0679330 | AT5G22060.1 | 82.143 | 420 | 69 | 4 | 1 | 415 | 1 | 419 | 0.0 | 669 |
Msa0679330 | AT3G44110.1 | 84.798 | 421 | 57 | 4 | 1 | 415 | 1 | 420 | 0.0 | 655 |
Msa0679330 | AT3G44110.2 | 87.651 | 332 | 37 | 3 | 1 | 329 | 1 | 331 | 0.0 | 530 |
Msa0679330 | AT3G62600.1 | 36.648 | 352 | 181 | 11 | 14 | 356 | 27 | 345 | 3.93e-55 | 186 |
Msa0679330 | AT2G20560.1 | 33.618 | 351 | 206 | 7 | 14 | 356 | 5 | 336 | 1.42e-51 | 176 |
Msa0679330 | AT1G80030.4 | 30.380 | 395 | 246 | 11 | 14 | 388 | 76 | 461 | 4.54e-48 | 171 |
Msa0679330 | AT1G80030.2 | 30.380 | 395 | 246 | 11 | 14 | 388 | 76 | 461 | 5.72e-48 | 171 |
Msa0679330 | AT1G80030.3 | 30.380 | 395 | 246 | 11 | 14 | 388 | 76 | 461 | 5.72e-48 | 171 |
Msa0679330 | AT1G80030.1 | 30.380 | 395 | 246 | 11 | 14 | 388 | 76 | 461 | 5.72e-48 | 171 |
Msa0679330 | AT5G48030.1 | 34.375 | 352 | 199 | 13 | 14 | 348 | 95 | 431 | 1.28e-46 | 166 |
Msa0679330 | AT2G22360.1 | 32.703 | 370 | 226 | 9 | 14 | 376 | 87 | 440 | 2.31e-46 | 165 |
Msa0679330 | AT4G28480.1 | 30.791 | 354 | 223 | 7 | 14 | 356 | 5 | 347 | 3.98e-45 | 160 |
Msa0679330 | AT5G25530.2 | 31.856 | 361 | 200 | 10 | 14 | 356 | 5 | 337 | 3.66e-44 | 157 |
Msa0679330 | AT5G01390.1 | 30.831 | 373 | 184 | 11 | 14 | 356 | 5 | 333 | 3.11e-43 | 154 |
Msa0679330 | AT4G39960.1 | 31.322 | 348 | 218 | 8 | 12 | 345 | 84 | 424 | 1.90e-42 | 155 |
Msa0679330 | AT4G39960.2 | 31.322 | 348 | 218 | 8 | 12 | 345 | 84 | 424 | 1.90e-42 | 155 |
Msa0679330 | AT3G08910.1 | 32.105 | 380 | 157 | 12 | 14 | 356 | 5 | 320 | 9.09e-42 | 150 |
Msa0679330 | AT1G10350.1 | 30.376 | 372 | 200 | 11 | 14 | 356 | 5 | 346 | 3.35e-41 | 149 |
Msa0679330 | AT1G59725.1 | 31.054 | 351 | 207 | 9 | 14 | 356 | 5 | 328 | 3.48e-41 | 149 |
Msa0679330 | AT5G25530.1 | 31.165 | 369 | 200 | 11 | 14 | 356 | 5 | 345 | 3.66e-41 | 149 |
Msa0679330 | AT3G17830.1 | 29.859 | 355 | 219 | 9 | 12 | 345 | 62 | 407 | 7.50e-36 | 138 |
Msa0679330 | AT1G28210.3 | 28.117 | 377 | 230 | 12 | 7 | 366 | 42 | 394 | 3.96e-34 | 131 |
Msa0679330 | AT1G28210.2 | 28.117 | 377 | 230 | 12 | 7 | 366 | 42 | 394 | 5.78e-34 | 131 |
Msa0679330 | AT1G28210.1 | 28.117 | 377 | 230 | 12 | 7 | 366 | 42 | 394 | 6.30e-34 | 131 |
Msa0679330 | AT2G20550.1 | 37.931 | 145 | 88 | 1 | 212 | 356 | 141 | 283 | 1.07e-26 | 108 |
Msa0679330 | AT2G20550.2 | 37.931 | 145 | 88 | 1 | 212 | 356 | 141 | 283 | 1.07e-26 | 108 |
Msa0679330 | AT3G47940.1 | 29.952 | 207 | 128 | 2 | 150 | 356 | 157 | 346 | 4.89e-26 | 108 |
Msa0679330 | AT3G47940.1 | 32.990 | 194 | 67 | 3 | 14 | 144 | 5 | 198 | 1.92e-20 | 92.4 |
Msa0679330 | AT4G28480.2 | 35.374 | 147 | 91 | 2 | 210 | 356 | 147 | 289 | 1.47e-23 | 100 |
Msa0679330 | AT4G28480.2 | 41.441 | 111 | 55 | 2 | 14 | 119 | 5 | 110 | 3.13e-18 | 85.1 |
Msa0679330 | AT5G01390.2 | 35.507 | 138 | 87 | 1 | 219 | 356 | 140 | 275 | 3.25e-23 | 99.0 |
Msa0679330 | AT5G01390.2 | 39.344 | 122 | 49 | 4 | 14 | 110 | 5 | 126 | 3.11e-16 | 79.0 |
Msa0679330 | AT5G01390.4 | 35.870 | 184 | 68 | 6 | 14 | 147 | 5 | 188 | 1.92e-21 | 92.8 |
Msa0679330 | AT1G11040.1 | 34.722 | 144 | 92 | 1 | 213 | 356 | 291 | 432 | 6.09e-18 | 85.9 |
Msa0679330 | AT5G01390.3 | 39.344 | 122 | 49 | 4 | 14 | 110 | 5 | 126 | 1.96e-16 | 79.0 |
Msa0679330 | AT1G44160.1 | 31.111 | 135 | 91 | 1 | 222 | 356 | 221 | 353 | 1.65e-15 | 77.8 |
Msa0679330 | AT2G21510.5 | 44.211 | 95 | 43 | 3 | 12 | 102 | 5 | 93 | 3.81e-14 | 73.6 |
Msa0679330 | AT2G21510.2 | 44.211 | 95 | 43 | 3 | 12 | 102 | 5 | 93 | 4.66e-14 | 73.6 |
Msa0679330 | AT2G21510.4 | 44.211 | 95 | 43 | 3 | 12 | 102 | 5 | 93 | 4.66e-14 | 73.6 |
Msa0679330 | AT2G21510.3 | 44.211 | 95 | 43 | 3 | 12 | 102 | 5 | 93 | 5.00e-14 | 73.2 |
Msa0679330 | AT2G21510.1 | 44.211 | 95 | 43 | 3 | 12 | 102 | 5 | 93 | 5.00e-14 | 73.2 |
Msa0679330 | AT1G77020.1 | 44.792 | 96 | 41 | 4 | 12 | 102 | 5 | 93 | 1.41e-13 | 72.4 |
Msa0679330 | AT1G59980.2 | 47.059 | 68 | 32 | 1 | 15 | 78 | 25 | 92 | 3.97e-13 | 70.9 |
Msa0679330 | AT3G08970.1 | 46.914 | 81 | 40 | 1 | 8 | 85 | 22 | 102 | 4.55e-13 | 71.2 |
Msa0679330 | AT3G08970.2 | 46.914 | 81 | 40 | 1 | 8 | 85 | 22 | 102 | 4.55e-13 | 71.2 |
Msa0679330 | AT5G03160.1 | 52.632 | 95 | 37 | 4 | 4 | 93 | 361 | 452 | 4.56e-13 | 71.2 |
Msa0679330 | AT1G59980.1 | 47.059 | 68 | 32 | 1 | 15 | 78 | 25 | 92 | 5.86e-13 | 70.5 |
Msa0679330 | AT5G05750.1 | 40.777 | 103 | 48 | 4 | 14 | 103 | 115 | 217 | 1.04e-12 | 68.9 |
Msa0679330 | AT4G39150.3 | 42.553 | 94 | 44 | 3 | 12 | 101 | 5 | 92 | 1.33e-12 | 68.9 |
Msa0679330 | AT4G39150.1 | 42.553 | 94 | 44 | 3 | 12 | 101 | 5 | 92 | 1.33e-12 | 68.9 |
Msa0679330 | AT4G39150.2 | 42.553 | 94 | 44 | 3 | 12 | 101 | 5 | 92 | 1.33e-12 | 68.9 |
Msa0679330 | AT1G21080.3 | 41.053 | 95 | 45 | 3 | 12 | 102 | 5 | 92 | 2.62e-12 | 68.6 |
Msa0679330 | AT1G21080.1 | 41.053 | 95 | 45 | 3 | 12 | 102 | 5 | 92 | 2.99e-12 | 68.2 |
Msa0679330 | AT1G68370.1 | 51.471 | 68 | 29 | 1 | 15 | 78 | 19 | 86 | 3.43e-12 | 68.2 |
Msa0679330 | AT3G57340.1 | 39.394 | 99 | 46 | 3 | 14 | 98 | 114 | 212 | 5.57e-12 | 67.4 |
Msa0679330 | AT3G57340.2 | 39.394 | 99 | 46 | 3 | 14 | 98 | 114 | 212 | 5.57e-12 | 67.4 |
Msa0679330 | AT2G35720.1 | 38.824 | 85 | 45 | 1 | 5 | 82 | 7 | 91 | 7.89e-11 | 64.3 |
Msa0679330 | AT1G76700.1 | 41.053 | 95 | 46 | 3 | 12 | 102 | 5 | 93 | 8.69e-11 | 63.9 |
Msa0679330 | AT1G24120.1 | 45.588 | 68 | 33 | 2 | 15 | 78 | 22 | 89 | 8.73e-11 | 63.9 |
Find 154 sgRNAs with CRISPR-Local
Find 311 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCGAAATACTTAATATGTTT+TGG | 0.247598 | 4_4:-36946596 | Msa0679330:intron |
GACATCTTCTCGTCTTTCTT+TGG | 0.252245 | 4_4:-36949250 | Msa0679330:intron |
TACAGCAAAGGTTCTAAATC+TGG | 0.260581 | 4_4:-36947873 | Msa0679330:intron |
TCATCCTCTCAAGGTCTCTT+TGG | 0.272658 | 4_4:-36949081 | Msa0679330:CDS |
TGCAAGGATGCTGCATTTGC+TGG | 0.288553 | 4_4:+36947775 | None:intergenic |
TGGGATTGTGTTTGAGCTTT+GGG | 0.291118 | 4_4:+36950682 | None:intergenic |
TAAAGCTTGCCCTTCATAAA+TGG | 0.299708 | 4_4:+36947027 | None:intergenic |
CTGTACAATTAAAATCCTTA+TGG | 0.300679 | 4_4:+36946422 | None:intergenic |
CCAAAACATATTAAGTATTT+CGG | 0.305603 | 4_4:+36946596 | None:intergenic |
CTGGGATTGTGTTTGAGCTT+TGG | 0.305895 | 4_4:+36950681 | None:intergenic |
CCAAGTGAGTAAGCACAAAT+TGG | 0.314955 | 4_4:+36947381 | None:intergenic |
CTTCTTGTTCTTGAACTACT+AGG | 0.315780 | 4_4:-36950552 | Msa0679330:five_prime_UTR |
CTATGTAGTGTTTGGTTCAA+TGG | 0.319946 | 4_4:-36946687 | Msa0679330:three_prime_UTR |
TTGACAACCAGCACATTTCA+TGG | 0.323834 | 4_4:+36947845 | None:intergenic |
GGAATGGGTGGTGGAGGCGG+TGG | 0.324217 | 4_4:-36949289 | Msa0679330:CDS |
ATGGGTGGTGGAGGCGGTGG+TGG | 0.330271 | 4_4:-36949286 | Msa0679330:CDS |
TCGGGATCACCACCCTTATC+AGG | 0.339085 | 4_4:+36950374 | None:intergenic |
CCAATTTGTGCTTACTCACT+TGG | 0.343644 | 4_4:-36947381 | Msa0679330:CDS |
TTGCAGCCAGACACAGTTAC+TGG | 0.349899 | 4_4:-36947512 | Msa0679330:intron |
TGATCAGGTGAAAGGTTTGC+AGG | 0.350853 | 4_4:-36946965 | Msa0679330:CDS |
TACACTTCATGATGTCAATA+TGG | 0.351289 | 4_4:-36946878 | Msa0679330:CDS |
GAAGGAATGGGTGGTGGAGG+CGG | 0.352689 | 4_4:-36949292 | Msa0679330:CDS |
CTGAACAAGGATAAGATGTT+TGG | 0.368108 | 4_4:-36950512 | Msa0679330:exon |
CTCTTGAACAGAAAAGGTTA+AGG | 0.385089 | 4_4:+36946378 | None:intergenic |
ACGAGGTACTATGAAATCTT+AGG | 0.390855 | 4_4:-36950464 | Msa0679330:CDS |
ATATGGTGAGGATGCTCTTA+AGG | 0.394161 | 4_4:-36949314 | Msa0679330:CDS |
ACACGCGAAGTTTGTTATAG+TGG | 0.400056 | 4_4:+36950625 | None:intergenic |
GACAGAACCTATGTAGTGTT+TGG | 0.400741 | 4_4:-36946695 | Msa0679330:three_prime_UTR |
TGCATTTGCTGGATCATTGA+TGG | 0.402426 | 4_4:+36947786 | None:intergenic |
CTTCTCTTCTCTCATTCATT+CGG | 0.405261 | 4_4:-36950591 | Msa0679330:five_prime_UTR |
CTTCTTATATTTATTGTCGA+TGG | 0.406138 | 4_4:-36946639 | Msa0679330:three_prime_UTR |
TCAATATGGAAGAGGAGAAT+AGG | 0.410593 | 4_4:-36946864 | Msa0679330:CDS |
TGAACAGGTGGTGGTGGTGG+TGG | 0.412145 | 4_4:-36949146 | Msa0679330:intron |
TCTTGAACAGAAAAGGTTAA+GGG | 0.418167 | 4_4:+36946379 | None:intergenic |
TCCTCTCAAGGTCTCTTTGG+AGG | 0.418220 | 4_4:-36949078 | Msa0679330:CDS |
AAAGACGAGAAGATGTCAAA+TGG | 0.431223 | 4_4:+36949256 | None:intergenic |
GCATCCTTGCAATGAATGTA+AGG | 0.434783 | 4_4:-36947763 | Msa0679330:CDS |
AGAGCTAGCACAAGCTTATG+AGG | 0.435011 | 4_4:-36949374 | Msa0679330:CDS |
TATTAAGAATCATCCTGATA+AGG | 0.441385 | 4_4:-36950387 | Msa0679330:CDS |
ACAGTGTGTGCTCTACAAAA+AGG | 0.442437 | 4_4:+36947429 | None:intergenic |
TGATCAAGACTTAGAGTGTC+GGG | 0.443069 | 4_4:+36946982 | None:intergenic |
TTCTTATATTTATTGTCGAT+GGG | 0.446404 | 4_4:-36946638 | Msa0679330:three_prime_UTR |
ATAGGTTCTGTCCAACACTA+TGG | 0.452002 | 4_4:+36946706 | None:intergenic |
ACAGCAAAGGTTCTAAATCT+GGG | 0.455064 | 4_4:-36947872 | Msa0679330:intron |
GCGAAGTTTGTTATAGTGGT+TGG | 0.460448 | 4_4:+36950629 | None:intergenic |
ATAAATGGCCTCTGGTACAT+CGG | 0.461071 | 4_4:+36947042 | None:intergenic |
GCTTTGGGTCCCACGGAAGA+AGG | 0.462719 | 4_4:+36950697 | None:intergenic |
ATATCCCCAGTAACTGTGTC+TGG | 0.462941 | 4_4:+36947506 | None:intergenic |
TTCTTGTTCTTGAACTACTA+GGG | 0.467185 | 4_4:-36950551 | Msa0679330:five_prime_UTR |
ACCAGGCTTGACAACTTCTC+CGG | 0.467557 | 4_4:+36947328 | None:intergenic |
GAGGAAACAGCAGCAACAAC+AGG | 0.467731 | 4_4:-36946842 | Msa0679330:CDS |
CACGTCTCTGCCTCCGTCCT+CGG | 0.470973 | 4_4:+36949117 | None:intergenic |
AATTGTGATGAAGGTTTAGC+TGG | 0.472131 | 4_4:+36946934 | None:intergenic |
TCATAAATATCACGCTTCTC+AGG | 0.473513 | 4_4:+36949340 | None:intergenic |
AAAAGAAAACAAACCTTCTC+GGG | 0.479638 | 4_4:+36950356 | None:intergenic |
ATGTCTGTCAATTGTGATGA+AGG | 0.480120 | 4_4:+36946925 | None:intergenic |
ATTAAGAATCATCCTGATAA+GGG | 0.483087 | 4_4:-36950386 | Msa0679330:CDS |
TGCAGCCAGACACAGTTACT+GGG | 0.483778 | 4_4:-36947511 | Msa0679330:intron |
GTATGAACAGGTGGTGGTGG+TGG | 0.487493 | 4_4:-36949149 | Msa0679330:intron |
CGTGATATTTATGATACATA+TGG | 0.487702 | 4_4:-36949331 | Msa0679330:CDS |
TGCCCTTCATAAATGGCCTC+TGG | 0.489076 | 4_4:+36947034 | None:intergenic |
CTCTCAACATACTGCTTCAT+CGG | 0.492790 | 4_4:+36947602 | None:intergenic |
TGTACCCTCTGTGCCCCACC+AGG | 0.495428 | 4_4:+36946793 | None:intergenic |
TCTTTGGAGGATCTTTACCT+TGG | 0.498256 | 4_4:-36949065 | Msa0679330:CDS |
CGACACTCTAAGTCTTGATC+AGG | 0.498606 | 4_4:-36946980 | Msa0679330:CDS |
AAGGAAGGAATGGGTGGTGG+AGG | 0.501111 | 4_4:-36949295 | Msa0679330:CDS |
GCATTTGCTGGATCATTGAT+GGG | 0.503185 | 4_4:+36947787 | None:intergenic |
GTACCAGAGGCCATTTATGA+AGG | 0.504857 | 4_4:-36947037 | Msa0679330:CDS |
TTTATCATTGATAGTTTCAC+CGG | 0.508139 | 4_4:+36947737 | None:intergenic |
CCAGGCTTGACAACTTCTCC+GGG | 0.508832 | 4_4:+36947329 | None:intergenic |
CTTCTAGACCCTTCTTCCGT+GGG | 0.509635 | 4_4:-36950706 | Msa0679330:five_prime_UTR |
TAATTAAGAGTGAGATGGAA+TGG | 0.509704 | 4_4:+36950654 | None:intergenic |
GGTTCGATTTGATAAGAAGT+TGG | 0.509723 | 4_4:+36947351 | None:intergenic |
CCCGGAGAAGTTGTCAAGCC+TGG | 0.510330 | 4_4:-36947329 | Msa0679330:intron |
CTTGAAGTTCATGTCGAGAA+AGG | 0.510906 | 4_4:-36947663 | Msa0679330:CDS |
CTTAAGGAAGGAATGGGTGG+TGG | 0.513608 | 4_4:-36949298 | Msa0679330:CDS |
AGTGAGATGGAATGGATGGC+TGG | 0.513782 | 4_4:+36950662 | None:intergenic |
GGGGCTTCCATGAAATGTGC+TGG | 0.516637 | 4_4:-36947852 | Msa0679330:CDS |
TCTTCTAGACCCTTCTTCCG+TGG | 0.517410 | 4_4:-36950707 | Msa0679330:five_prime_UTR |
TTGTCAAGGAACTGGTATGA+AGG | 0.522018 | 4_4:-36947829 | Msa0679330:CDS |
GGATGCTCTTAAGGAAGGAA+TGG | 0.523255 | 4_4:-36949305 | Msa0679330:CDS |
TGTGCTGGTTGTCAAGGAAC+TGG | 0.527018 | 4_4:-36947837 | Msa0679330:CDS |
AAGTATTTCGGATGTCAGAA+TGG | 0.529360 | 4_4:+36946608 | None:intergenic |
CTTGTATGAACAGGTGGTGG+TGG | 0.530748 | 4_4:-36949152 | Msa0679330:intron |
TGCAATGAATGTAAGGGTAC+CGG | 0.531405 | 4_4:-36947756 | Msa0679330:CDS |
ACTGCTTCATCGGCTTCACC+AGG | 0.531944 | 4_4:+36947612 | None:intergenic |
CTAAGTCTTGATCAGGTGAA+AGG | 0.533754 | 4_4:-36946973 | Msa0679330:CDS |
AGACCGCTGTCCACAGTGCA+AGG | 0.534307 | 4_4:-36947715 | Msa0679330:CDS |
TGGATTAATTAAGAGTGAGA+TGG | 0.534996 | 4_4:+36950649 | None:intergenic |
AAGACGAGAAGATGTCAAAT+GGG | 0.536873 | 4_4:+36949257 | None:intergenic |
GTCTAGAAGAGTGGGAAGTA+CGG | 0.543871 | 4_4:+36950720 | None:intergenic |
AAGGTTTCTATTAGACACCT+TGG | 0.547621 | 4_4:-36947810 | Msa0679330:CDS |
CATTGAACCAAACACTACAT+AGG | 0.548900 | 4_4:+36946688 | None:intergenic |
GATGCTCTTAAGGAAGGAAT+GGG | 0.551678 | 4_4:-36949304 | Msa0679330:CDS |
CTTTGGGTCCCACGGAAGAA+GGG | 0.555485 | 4_4:+36950698 | None:intergenic |
GAAGAAGGGTCTAGAAGAGT+GGG | 0.556996 | 4_4:+36950712 | None:intergenic |
AGTCAGAAGATTACATTCCC+TGG | 0.557761 | 4_4:-36947630 | Msa0679330:CDS |
TTTGTGCTTACTCACTTGGA+TGG | 0.559690 | 4_4:-36947377 | Msa0679330:CDS |
TCATGATGTCAATATGGAAG+AGG | 0.561923 | 4_4:-36946872 | Msa0679330:CDS |
ATATGGAAGAGGAGAATAGG+AGG | 0.568120 | 4_4:-36946861 | Msa0679330:CDS |
GTGAGATGGAATGGATGGCT+GGG | 0.569750 | 4_4:+36950663 | None:intergenic |
TCCACAGTGCAAGGGAGAGA+AGG | 0.570484 | 4_4:-36947706 | Msa0679330:CDS |
AAAGCTTCTTAGATGTTCCA+AGG | 0.572913 | 4_4:+36949048 | None:intergenic |
GGTGAGGATGCTCTTAAGGA+AGG | 0.584094 | 4_4:-36949310 | Msa0679330:CDS |
CAGCAAAGGTTCTAAATCTG+GGG | 0.584886 | 4_4:-36947871 | Msa0679330:CDS |
TGTTTGAGCTTTGGGTCCCA+CGG | 0.585107 | 4_4:+36950690 | None:intergenic |
GGAAGAAGGGTCTAGAAGAG+TGG | 0.586941 | 4_4:+36950711 | None:intergenic |
AGATGTGGTTCATCCTCTCA+AGG | 0.587250 | 4_4:-36949090 | Msa0679330:CDS |
TCTCTTACTGAGGCTTTGTG+TGG | 0.587623 | 4_4:-36947407 | Msa0679330:CDS |
GCTGGATCATTGATGGGCCA+AGG | 0.587884 | 4_4:+36947793 | None:intergenic |
TATACATGCAGATTCATACA+AGG | 0.587937 | 4_4:-36947085 | Msa0679330:intron |
TATGCCTGGTGGGGCACAGA+GGG | 0.589588 | 4_4:-36946797 | Msa0679330:CDS |
TACAAGGCTATTAACGATGA+GGG | 0.590494 | 4_4:-36947069 | Msa0679330:CDS |
GTGGTGGTAGTAGCCGAGGA+CGG | 0.590849 | 4_4:-36949130 | Msa0679330:CDS |
AGAAGATGTCAAATGGGTCA+TGG | 0.591968 | 4_4:+36949263 | None:intergenic |
ATGAAATGTGCTGGTTGTCA+AGG | 0.596299 | 4_4:-36947843 | Msa0679330:CDS |
TAAGAGTGAGATGGAATGGA+TGG | 0.600894 | 4_4:+36950658 | None:intergenic |
GACGAGGATGATGATATGCC+TGG | 0.603076 | 4_4:-36946811 | Msa0679330:CDS |
GGTGGTGGTGGTAGTAGCCG+AGG | 0.603379 | 4_4:-36949134 | Msa0679330:CDS |
GCAGAGACGTGGAGAAGATG+TGG | 0.607136 | 4_4:-36949105 | Msa0679330:CDS |
CATGGAGATCGATGAGTGCG+AGG | 0.609688 | 4_4:-36946905 | Msa0679330:CDS |
TACCAGAGGCCATTTATGAA+GGG | 0.613207 | 4_4:-36947036 | Msa0679330:CDS |
CTGATCAAGACTTAGAGTGT+CGG | 0.613726 | 4_4:+36946981 | None:intergenic |
CGAGGACGGAGGCAGAGACG+TGG | 0.614603 | 4_4:-36949116 | Msa0679330:CDS |
GACCGCTGTCCACAGTGCAA+GGG | 0.616803 | 4_4:-36947714 | Msa0679330:CDS |
TTCATCACAATTGACAGACA+TGG | 0.617149 | 4_4:-36946923 | Msa0679330:CDS |
CTCCCTTGCACTGTGGACAG+CGG | 0.620041 | 4_4:+36947712 | None:intergenic |
GCTCTTAAGGAAGGAATGGG+TGG | 0.621909 | 4_4:-36949301 | Msa0679330:CDS |
GTACCCTTACATTCATTGCA+AGG | 0.622171 | 4_4:+36947759 | None:intergenic |
GCACACACTGTCTCTTACTG+AGG | 0.631481 | 4_4:-36947417 | Msa0679330:CDS |
AGGATGATGATATGCCTGGT+GGG | 0.636687 | 4_4:-36946807 | Msa0679330:CDS |
CATCCTTGCAATGAATGTAA+GGG | 0.637972 | 4_4:-36947762 | Msa0679330:CDS |
TAAGGGTGGTGATCCCGAGA+AGG | 0.642218 | 4_4:-36950369 | Msa0679330:intron |
TCTTGTGCTCAAAGTGCAGT+GGG | 0.652317 | 4_4:-36949010 | Msa0679330:intron |
ATACAAGGCTATTAACGATG+AGG | 0.654168 | 4_4:-36947070 | Msa0679330:CDS |
CTAATACAAAATGTTGACAA+AGG | 0.659134 | 4_4:-36946492 | Msa0679330:intron |
AGGGAATGCCGATGTACCAG+AGG | 0.659833 | 4_4:-36947050 | Msa0679330:CDS |
GTGGTAGTAGCCGAGGACGG+AGG | 0.663999 | 4_4:-36949127 | Msa0679330:CDS |
GTCTTGTGCTCAAAGTGCAG+TGG | 0.666176 | 4_4:-36949011 | Msa0679330:CDS |
GCAGCCAGACACAGTTACTG+GGG | 0.674307 | 4_4:-36947510 | Msa0679330:intron |
GGATGATGATATGCCTGGTG+GGG | 0.675094 | 4_4:-36946806 | Msa0679330:CDS |
CTGCTTCATCGGCTTCACCA+GGG | 0.675980 | 4_4:+36947613 | None:intergenic |
AAGAATCATCCTGATAAGGG+TGG | 0.677133 | 4_4:-36950383 | Msa0679330:CDS |
CTTCTTATCAAATCGAACCC+CGG | 0.678657 | 4_4:-36947347 | Msa0679330:CDS |
ACCTTCTCTCCCTTGCACTG+TGG | 0.679545 | 4_4:+36947705 | None:intergenic |
TCCTCCAAAGAGACCTTGAG+AGG | 0.679609 | 4_4:+36949077 | None:intergenic |
CGAAGAAAAGTGATAGTACG+AGG | 0.681812 | 4_4:-36950481 | Msa0679330:CDS |
GCTTTACATTCACTTCACTG+TGG | 0.688048 | 4_4:-36947010 | Msa0679330:CDS |
GATCAAGACTTAGAGTGTCG+GGG | 0.692079 | 4_4:+36946983 | None:intergenic |
ATATGCCTGGTGGGGCACAG+AGG | 0.713014 | 4_4:-36946798 | Msa0679330:CDS |
GAGGATGATGATATGCCTGG+TGG | 0.714325 | 4_4:-36946808 | Msa0679330:CDS |
TATTTATGATACATATGGTG+AGG | 0.723619 | 4_4:-36949326 | Msa0679330:CDS |
CAGGCTTGACAACTTCTCCG+GGG | 0.727309 | 4_4:+36947330 | None:intergenic |
ACAACAGGAAGCATATGACG+AGG | 0.749856 | 4_4:-36946827 | Msa0679330:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AGTTTAATTTTTTTTTTTTG+TGG | - | chr4_4:36947657-36947676 | Msa0679330:CDS | 10.0% |
!!! | GTTTAATTTTTTTTTTTTGT+GGG | - | chr4_4:36947658-36947677 | Msa0679330:CDS | 10.0% |
!!! | ATTATAATCAAGATTTTTTT+TGG | - | chr4_4:36949108-36949127 | Msa0679330:CDS | 10.0% |
!!! | TTTGAGTTTGATTTAAATTT+TGG | - | chr4_4:36946836-36946855 | Msa0679330:CDS | 15.0% |
!!! | TATATTATACTAGAAAGTTT+TGG | - | chr4_4:36946864-36946883 | Msa0679330:CDS | 15.0% |
!!! | TATATATGATAATGTATCTA+TGG | + | chr4_4:36948352-36948371 | None:intergenic | 15.0% |
!! | AATAATATTGAAAATCAGAT+GGG | + | chr4_4:36948591-36948610 | None:intergenic | 15.0% |
!! | TAATAATATTGAAAATCAGA+TGG | + | chr4_4:36948592-36948611 | None:intergenic | 15.0% |
!!! | TCTGATTTTCAATATTATTA+TGG | - | chr4_4:36948592-36948611 | Msa0679330:intron | 15.0% |
!!! | AAAAGATTTGTAATTTTTTG+TGG | - | chr4_4:36949955-36949974 | Msa0679330:intron | 15.0% |
!! | TTGATTAATTGTTATGTGTT+TGG | - | chr4_4:36946764-36946783 | Msa0679330:exon | 20.0% |
!!! | AGGATTTGTAGAATTTTTTT+AGG | - | chr4_4:36946909-36946928 | Msa0679330:CDS | 20.0% |
!! | TCACAAATTATCAAAAGAAA+AGG | + | chr4_4:36946954-36946973 | None:intergenic | 20.0% |
!!! | TATCTTTTGTTATAGACATA+GGG | + | chr4_4:36947373-36947392 | None:intergenic | 20.0% |
!!! | TTATCTTTTGTTATAGACAT+AGG | + | chr4_4:36947374-36947393 | None:intergenic | 20.0% |
!! | CTTTCATATGCTATATATAT+TGG | - | chr4_4:36947436-36947455 | Msa0679330:CDS | 20.0% |
!! | TCTAATAAGTCAATCATAAA+AGG | - | chr4_4:36947573-36947592 | Msa0679330:intron | 20.0% |
!!! | TTTTTCCAGTGAATTTTTTA+TGG | - | chr4_4:36948144-36948163 | Msa0679330:intron | 20.0% |
!! | TTACAAACAAAAAGACATTT+GGG | + | chr4_4:36948235-36948254 | None:intergenic | 20.0% |
!! | TTTACAAACAAAAAGACATT+TGG | + | chr4_4:36948236-36948255 | None:intergenic | 20.0% |
!!! | TTTTTGTTTGTAAACACATT+TGG | - | chr4_4:36948242-36948261 | Msa0679330:intron | 20.0% |
!! | TCATATATCAAGTGTAAATT+TGG | + | chr4_4:36948560-36948579 | None:intergenic | 20.0% |
!! | ATATAGTAGATTTGTGTAAT+TGG | - | chr4_4:36948841-36948860 | Msa0679330:intron | 20.0% |
!! | TATAGTAGATTTGTGTAATT+GGG | - | chr4_4:36948842-36948861 | Msa0679330:intron | 20.0% |
!!! | TCTTCAGTTTGTTAAATTTT+GGG | + | chr4_4:36948978-36948997 | None:intergenic | 20.0% |
!!! | TAATCAAGATTTTTTTTGGT+TGG | - | chr4_4:36949112-36949131 | Msa0679330:CDS | 20.0% |
!! | TTTGTAATTATTTACAGCAA+AGG | - | chr4_4:36949182-36949201 | Msa0679330:intron | 20.0% |
!! | TTCTTATATTTATTGTCGAT+GGG | - | chr4_4:36950429-36950448 | Msa0679330:CDS | 20.0% |
!! | CCAAAACATATTAAGTATTT+CGG | + | chr4_4:36950474-36950493 | None:intergenic | 20.0% |
!!! | TTTTTGAAACATCTATATCT+TGG | - | chr4_4:36950496-36950515 | Msa0679330:CDS | 20.0% |
! | TATTAAGAATCATCCTGATA+AGG | - | chr4_4:36946680-36946699 | Msa0679330:three_prime_UTR | 25.0% |
! | ATTAAGAATCATCCTGATAA+GGG | - | chr4_4:36946681-36946700 | Msa0679330:three_prime_UTR | 25.0% |
! | AAAAAGAAAACAAACCTTCT+CGG | + | chr4_4:36946715-36946734 | None:intergenic | 25.0% |
!!! | AAAGTTTTGGTGATTGATTT+AGG | - | chr4_4:36946877-36946896 | Msa0679330:CDS | 25.0% |
!!! | AAGTTTTGGTGATTGATTTA+GGG | - | chr4_4:36946878-36946897 | Msa0679330:CDS | 25.0% |
! | TGATTGTTGAGAAATTTGAT+TGG | - | chr4_4:36946971-36946990 | Msa0679330:CDS | 25.0% |
! | CAAAAATAAGACAATCCAAA+CGG | + | chr4_4:36947158-36947177 | None:intergenic | 25.0% |
!!! | ATTTTTGAGCTTATGCAAAA+CGG | - | chr4_4:36947171-36947190 | Msa0679330:intron | 25.0% |
!!! | GACATATTTTAAGTAGGTTT+TGG | + | chr4_4:36947480-36947499 | None:intergenic | 25.0% |
!!! | GCTTATGACATATTTTAAGT+AGG | + | chr4_4:36947486-36947505 | None:intergenic | 25.0% |
!! | TTTACGCGTTTTTATTGAAT+TGG | - | chr4_4:36947626-36947645 | Msa0679330:CDS | 25.0% |
! | CGTGATATTTATGATACATA+TGG | - | chr4_4:36947736-36947755 | Msa0679330:CDS | 25.0% |
! | TATTTATGATACATATGGTG+AGG | - | chr4_4:36947741-36947760 | Msa0679330:CDS | 25.0% |
!! | AGAATTCCTATTGTGTTATT+TGG | - | chr4_4:36947842-36947861 | Msa0679330:CDS | 25.0% |
! | TGTATGGTTTGATTATCTAA+AGG | - | chr4_4:36947884-36947903 | Msa0679330:intron | 25.0% |
! | GTATGGTTTGATTATCTAAA+GGG | - | chr4_4:36947885-36947904 | Msa0679330:intron | 25.0% |
! | TTCATCCATAAAAAATTCAC+TGG | + | chr4_4:36948152-36948171 | None:intergenic | 25.0% |
!!! | TAAACAATCATTTTTCATCC+TGG | - | chr4_4:36948176-36948195 | Msa0679330:intron | 25.0% |
! | GATAATGTATCTATGGAATT+GGG | + | chr4_4:36948345-36948364 | None:intergenic | 25.0% |
!! | TGATAATGTATCTATGGAAT+TGG | + | chr4_4:36948346-36948365 | None:intergenic | 25.0% |
! | AAAACCATGAAAAATAGAAG+AGG | + | chr4_4:36948624-36948643 | None:intergenic | 25.0% |
!!! | TTTTTGCACTGATTTTGTTT+TGG | - | chr4_4:36948690-36948709 | Msa0679330:intron | 25.0% |
!! | TTGTTTTCTTGTTGAAGATT+CGG | - | chr4_4:36948732-36948751 | Msa0679330:intron | 25.0% |
! | AAACATAAGAAAATGTGAGA+TGG | + | chr4_4:36948937-36948956 | None:intergenic | 25.0% |
!!! | GTCTTCAGTTTGTTAAATTT+TGG | + | chr4_4:36948979-36948998 | None:intergenic | 25.0% |
!! | TGTGTATTTTGTCAGTAATT+TGG | + | chr4_4:36949013-36949032 | None:intergenic | 25.0% |
! | TACTGACAAAATACACATTT+AGG | - | chr4_4:36949016-36949035 | Msa0679330:CDS | 25.0% |
! | ATAGCAACTAATGTAAGTAA+TGG | + | chr4_4:36949163-36949182 | None:intergenic | 25.0% |
!! | TTTATCATTGATAGTTTCAC+CGG | + | chr4_4:36949333-36949352 | None:intergenic | 25.0% |
!!! | GTTGAGAGTTTTAGTAATAT+TGG | - | chr4_4:36949480-36949499 | Msa0679330:intron | 25.0% |
! | AGTAGAATCAGAAAAAATGA+TGG | - | chr4_4:36950308-36950327 | Msa0679330:intron | 25.0% |
! | CTTCTTATATTTATTGTCGA+TGG | - | chr4_4:36950428-36950447 | Msa0679330:CDS | 25.0% |
!! | CCGAAATACTTAATATGTTT+TGG | - | chr4_4:36950471-36950490 | Msa0679330:CDS | 25.0% |
! | CTAATACAAAATGTTGACAA+AGG | - | chr4_4:36950575-36950594 | Msa0679330:five_prime_UTR | 25.0% |
!! | TTTTGCTAAGAAAAACCATA+AGG | - | chr4_4:36950630-36950649 | Msa0679330:five_prime_UTR | 25.0% |
! | CTGTACAATTAAAATCCTTA+TGG | + | chr4_4:36950648-36950667 | None:intergenic | 25.0% |
TAATTAAGAGTGAGATGGAA+TGG | + | chr4_4:36946416-36946435 | None:intergenic | 30.0% | |
TGGATTAATTAAGAGTGAGA+TGG | + | chr4_4:36946421-36946440 | None:intergenic | 30.0% | |
TTCTTGTTCTTGAACTACTA+GGG | - | chr4_4:36946516-36946535 | Msa0679330:intron | 30.0% | |
AAAAGAAAACAAACCTTCTC+GGG | + | chr4_4:36946714-36946733 | None:intergenic | 30.0% | |
!!! | GAATTTTTTTAGGTGTAGTG+TGG | - | chr4_4:36946919-36946938 | Msa0679330:CDS | 30.0% |
CATGAAGGAAAACAAAAACA+AGG | + | chr4_4:36947017-36947036 | None:intergenic | 30.0% | |
!!! | CTTGTTTTTGTTTTCCTTCA+TGG | - | chr4_4:36947015-36947034 | Msa0679330:CDS | 30.0% |
AGTCAATCATAAAAGGTTCA+TGG | - | chr4_4:36947580-36947599 | Msa0679330:intron | 30.0% | |
!! | TCCTATTGTGTTATTTGGTT+CGG | - | chr4_4:36947847-36947866 | Msa0679330:CDS | 30.0% |
AAAACCCAATTCCATTTGAA+GGG | + | chr4_4:36948512-36948531 | None:intergenic | 30.0% | |
AAAAACCCAATTCCATTTGA+AGG | + | chr4_4:36948513-36948532 | None:intergenic | 30.0% | |
!! | ATGTCCTCTTCTATTTTTCA+TGG | - | chr4_4:36948617-36948636 | Msa0679330:intron | 30.0% |
! | TATGTTTTCCTTCACAAAGA+AGG | - | chr4_4:36948802-36948821 | Msa0679330:intron | 30.0% |
GAATGATGAGACAAAAAACT+CGG | + | chr4_4:36948906-36948925 | None:intergenic | 30.0% | |
CAAGTTCAATACATTGAAGA+TGG | - | chr4_4:36949049-36949068 | Msa0679330:CDS | 30.0% | |
AATACATTGAAGATGGTGTT+TGG | - | chr4_4:36949056-36949075 | Msa0679330:CDS | 30.0% | |
! | TCACTCTTTCTTTTGAACTT+GGG | + | chr4_4:36949615-36949634 | None:intergenic | 30.0% |
! | TTCACTCTTTCTTTTGAACT+TGG | + | chr4_4:36949616-36949635 | None:intergenic | 30.0% |
ATGTGATTCATTTACATACC+AGG | + | chr4_4:36949759-36949778 | None:intergenic | 30.0% | |
ATTCTAATCAGAAAGCCAAA+CGG | + | chr4_4:36949797-36949816 | None:intergenic | 30.0% | |
CTATTCGACAATACTATATC+TGG | + | chr4_4:36949844-36949863 | None:intergenic | 30.0% | |
TATACATGCAGATTCATACA+AGG | - | chr4_4:36949982-36950001 | Msa0679330:intron | 30.0% | |
TACACTTCATGATGTCAATA+TGG | - | chr4_4:36950189-36950208 | Msa0679330:intron | 30.0% | |
!!! | TTTTTTCTGATTCTACTGCT+GGG | + | chr4_4:36950305-36950324 | None:intergenic | 30.0% |
!!! | ATTTTTTCTGATTCTACTGC+TGG | + | chr4_4:36950306-36950325 | None:intergenic | 30.0% |
!!! | CTGTTTTTTAACCATAGTGT+TGG | - | chr4_4:36950350-36950369 | Msa0679330:intron | 30.0% |
!! | TTTTAATTGTACAGACTGAC+TGG | - | chr4_4:36950654-36950673 | Msa0679330:five_prime_UTR | 30.0% |
TCTTGAACAGAAAAGGTTAA+GGG | + | chr4_4:36950691-36950710 | None:intergenic | 30.0% | |
! | TTTTTCCTCTTGAACAGAAA+AGG | + | chr4_4:36950698-36950717 | None:intergenic | 30.0% |
TTTCTGTTCAAGAGGAAAAA+CGG | - | chr4_4:36950698-36950717 | Msa0679330:five_prime_UTR | 30.0% | |
CTTCTCTTCTCTCATTCATT+CGG | - | chr4_4:36946476-36946495 | Msa0679330:three_prime_UTR | 35.0% | |
CTTCTTGTTCTTGAACTACT+AGG | - | chr4_4:36946515-36946534 | Msa0679330:intron | 35.0% | |
!!! | GTTTTGTTTCGATCTGAACA+AGG | - | chr4_4:36946542-36946561 | Msa0679330:intron | 35.0% |
CTGAACAAGGATAAGATGTT+TGG | - | chr4_4:36946555-36946574 | Msa0679330:intron | 35.0% | |
!! | CTCGTACTATCACTTTTCTT+CGG | + | chr4_4:36946588-36946607 | None:intergenic | 35.0% |
! | ACGAGGTACTATGAAATCTT+AGG | - | chr4_4:36946603-36946622 | Msa0679330:three_prime_UTR | 35.0% |
! | TTGGTGATTGATTTAGGGTT+AGG | - | chr4_4:36946883-36946902 | Msa0679330:CDS | 35.0% |
! | TGGTGATTGATTTAGGGTTA+GGG | - | chr4_4:36946884-36946903 | Msa0679330:CDS | 35.0% |
! | ATTGATTTAGGGTTAGGGTT+AGG | - | chr4_4:36946889-36946908 | Msa0679330:CDS | 35.0% |
ATGATCAAATTACGCCATGA+AGG | + | chr4_4:36947032-36947051 | None:intergenic | 35.0% | |
AAGCGCTTATGTATAAGCTA+TGG | - | chr4_4:36947130-36947149 | Msa0679330:intron | 35.0% | |
AGCGCTTATGTATAAGCTAT+GGG | - | chr4_4:36947131-36947150 | Msa0679330:intron | 35.0% | |
TATTGTTCATAAGCCTGTCA+AGG | - | chr4_4:36947220-36947239 | Msa0679330:intron | 35.0% | |
TTCTCATAAACTACCTTGAC+AGG | + | chr4_4:36947236-36947255 | None:intergenic | 35.0% | |
!! | TTCATGGTGTTGTTATTGTG+AGG | - | chr4_4:36947596-36947615 | Msa0679330:intron | 35.0% |
TCATAAATATCACGCTTCTC+AGG | + | chr4_4:36947730-36947749 | None:intergenic | 35.0% | |
AAGACGAGAAGATGTCAAAT+GGG | + | chr4_4:36947813-36947832 | None:intergenic | 35.0% | |
AAAGACGAGAAGATGTCAAA+TGG | + | chr4_4:36947814-36947833 | None:intergenic | 35.0% | |
ACCGAACCAAATAACACAAT+AGG | + | chr4_4:36947851-36947870 | None:intergenic | 35.0% | |
! | GGTCTTAATCGATTTCTGTA+TGG | - | chr4_4:36947868-36947887 | Msa0679330:CDS | 35.0% |
!!! | GGTTTTTGACTTGTATGAAC+AGG | - | chr4_4:36947906-36947925 | Msa0679330:intron | 35.0% |
!!! | TTTTGACTTGTATGAACAGG+TGG | - | chr4_4:36947909-36947928 | Msa0679330:intron | 35.0% |
AAAGCTTCTTAGATGTTCCA+AGG | + | chr4_4:36948022-36948041 | None:intergenic | 35.0% | |
!!! | GTATCGTAAGAGTTTTGGTT+TGG | - | chr4_4:36948083-36948102 | Msa0679330:intron | 35.0% |
! | ATTTTTCATCCTGGAATGTG+AGG | - | chr4_4:36948185-36948204 | Msa0679330:intron | 35.0% |
! | TTGTAAACACATTTGGTGAC+TGG | - | chr4_4:36948249-36948268 | Msa0679330:intron | 35.0% |
! | TGTAAACACATTTGGTGACT+GGG | - | chr4_4:36948250-36948269 | Msa0679330:intron | 35.0% |
! | TTTCTTTTCGTCCCTTCAAA+TGG | - | chr4_4:36948498-36948517 | Msa0679330:intron | 35.0% |
TTGAAAATCAGATGGGTGTA+AGG | + | chr4_4:36948584-36948603 | None:intergenic | 35.0% | |
!!! | TGCACTGATTTTGTTTTGGA+CGG | - | chr4_4:36948694-36948713 | Msa0679330:intron | 35.0% |
!! | TACAGCAAAGGTTCTAAATC+TGG | - | chr4_4:36949194-36949213 | Msa0679330:intron | 35.0% |
!! | ACAGCAAAGGTTCTAAATCT+GGG | - | chr4_4:36949195-36949214 | Msa0679330:intron | 35.0% |
AAGGTTTCTATTAGACACCT+TGG | - | chr4_4:36949257-36949276 | Msa0679330:CDS | 35.0% | |
CATCCTTGCAATGAATGTAA+GGG | - | chr4_4:36949305-36949324 | Msa0679330:CDS | 35.0% | |
! | CACTCTTTCTTTTGAACTTG+GGG | + | chr4_4:36949614-36949633 | None:intergenic | 35.0% |
! | GGTTCGATTTGATAAGAAGT+TGG | + | chr4_4:36949719-36949738 | None:intergenic | 35.0% |
ACTATAGCAATGTAGCATAG+TGG | - | chr4_4:36949877-36949896 | Msa0679330:intron | 35.0% | |
ATACAAGGCTATTAACGATG+AGG | - | chr4_4:36949997-36950016 | Msa0679330:intron | 35.0% | |
TACAAGGCTATTAACGATGA+GGG | - | chr4_4:36949998-36950017 | Msa0679330:intron | 35.0% | |
TAAAGCTTGCCCTTCATAAA+TGG | + | chr4_4:36950043-36950062 | None:intergenic | 35.0% | |
AATTGTGATGAAGGTTTAGC+TGG | + | chr4_4:36950136-36950155 | None:intergenic | 35.0% | |
ATGTCTGTCAATTGTGATGA+AGG | + | chr4_4:36950145-36950164 | None:intergenic | 35.0% | |
TTCATCACAATTGACAGACA+TGG | - | chr4_4:36950144-36950163 | Msa0679330:intron | 35.0% | |
TCATGATGTCAATATGGAAG+AGG | - | chr4_4:36950195-36950214 | Msa0679330:intron | 35.0% | |
TCAATATGGAAGAGGAGAAT+AGG | - | chr4_4:36950203-36950222 | Msa0679330:intron | 35.0% | |
CATTGAACCAAACACTACAT+AGG | + | chr4_4:36950382-36950401 | None:intergenic | 35.0% | |
! | CTATGTAGTGTTTGGTTCAA+TGG | - | chr4_4:36950380-36950399 | Msa0679330:CDS | 35.0% |
AAGTATTTCGGATGTCAGAA+TGG | + | chr4_4:36950462-36950481 | None:intergenic | 35.0% | |
TCATCATAAAGTAGCACACT+GGG | + | chr4_4:36950547-36950566 | None:intergenic | 35.0% | |
ATCATCATAAAGTAGCACAC+TGG | + | chr4_4:36950548-36950567 | None:intergenic | 35.0% | |
CTCTTGAACAGAAAAGGTTA+AGG | + | chr4_4:36950692-36950711 | None:intergenic | 35.0% | |
! | CTTAACCTTTTCTGTTCAAG+AGG | - | chr4_4:36950690-36950709 | Msa0679330:five_prime_UTR | 35.0% |
TTCTGTTCAAGAGGAAAAAC+GGG | - | chr4_4:36950699-36950718 | Msa0679330:five_prime_UTR | 35.0% | |
TGGGATTGTGTTTGAGCTTT+GGG | + | chr4_4:36946388-36946407 | None:intergenic | 40.0% | |
TAAGAGTGAGATGGAATGGA+TGG | + | chr4_4:36946412-36946431 | None:intergenic | 40.0% | |
!! | GCGAAGTTTGTTATAGTGGT+TGG | + | chr4_4:36946441-36946460 | None:intergenic | 40.0% |
!! | ACACGCGAAGTTTGTTATAG+TGG | + | chr4_4:36946445-36946464 | None:intergenic | 40.0% |
CGAAGAAAAGTGATAGTACG+AGG | - | chr4_4:36946586-36946605 | Msa0679330:intron | 40.0% | |
AAGAATCATCCTGATAAGGG+TGG | - | chr4_4:36946684-36946703 | Msa0679330:three_prime_UTR | 40.0% | |
GCGTAATTTGATCATGTAGC+CGG | - | chr4_4:36947037-36947056 | Msa0679330:CDS | 40.0% | |
TTATCCCATTCCCACTAAGT+CGG | + | chr4_4:36947064-36947083 | None:intergenic | 40.0% | |
TTATAGACATAGGGCTCGTT+TGG | + | chr4_4:36947364-36947383 | None:intergenic | 40.0% | |
AGACTGTTTCGGAGAACTTA+AGG | + | chr4_4:36947514-36947533 | None:intergenic | 40.0% | |
AAGCACTTGTGAGACTGTTT+CGG | + | chr4_4:36947525-36947544 | None:intergenic | 40.0% | |
ATATGGTGAGGATGCTCTTA+AGG | - | chr4_4:36947753-36947772 | Msa0679330:CDS | 40.0% | |
GATGCTCTTAAGGAAGGAAT+GGG | - | chr4_4:36947763-36947782 | Msa0679330:CDS | 40.0% | |
AGAAGATGTCAAATGGGTCA+TGG | + | chr4_4:36947807-36947826 | None:intergenic | 40.0% | |
GACATCTTCTCGTCTTTCTT+TGG | - | chr4_4:36947817-36947836 | Msa0679330:CDS | 40.0% | |
! | TCTTTGGAGGATCTTTACCT+TGG | - | chr4_4:36948002-36948021 | Msa0679330:intron | 40.0% |
!! | GGTAGGTATCGTAAGAGTTT+TGG | - | chr4_4:36948078-36948097 | Msa0679330:intron | 40.0% |
! | TTTTGTTGAGCCGAAACTGT+AGG | - | chr4_4:36948282-36948301 | Msa0679330:intron | 40.0% |
TTTGTTGAGCCGAAACTGTA+GGG | - | chr4_4:36948283-36948302 | Msa0679330:intron | 40.0% | |
CTCTTTACCCAACAACAAGA+AGG | - | chr4_4:36948390-36948409 | Msa0679330:intron | 40.0% | |
!! | GTTCTGACCTTCTTGTTGTT+GGG | + | chr4_4:36948400-36948419 | None:intergenic | 40.0% |
! | AGTTCTGACCTTCTTGTTGT+TGG | + | chr4_4:36948401-36948420 | None:intergenic | 40.0% |
ACAAGAAGGTCAGAACTTGA+AGG | - | chr4_4:36948404-36948423 | Msa0679330:intron | 40.0% | |
GCAAAACCCTTTGGTGAAAA+GGG | + | chr4_4:36948440-36948459 | None:intergenic | 40.0% | |
AGCAAAACCCTTTGGTGAAA+AGG | + | chr4_4:36948441-36948460 | None:intergenic | 40.0% | |
! | TTCACCAAAGGGTTTTGCTT+TGG | - | chr4_4:36948442-36948461 | Msa0679330:intron | 40.0% |
GATACCAAAGCAAAACCCTT+TGG | + | chr4_4:36948449-36948468 | None:intergenic | 40.0% | |
TTCGTCCCTTCAAATGGAAT+TGG | - | chr4_4:36948504-36948523 | Msa0679330:intron | 40.0% | |
TCGTCCCTTCAAATGGAATT+GGG | - | chr4_4:36948505-36948524 | Msa0679330:intron | 40.0% | |
TTTGGAAAGATCTGTCACTG+TGG | + | chr4_4:36948542-36948561 | None:intergenic | 40.0% | |
!!! | GCACTGATTTTGTTTTGGAC+GGG | - | chr4_4:36948695-36948714 | Msa0679330:intron | 40.0% |
!!! | CACTGATTTTGTTTTGGACG+GGG | - | chr4_4:36948696-36948715 | Msa0679330:intron | 40.0% |
ACAGAGATCCTTCTTTGTGA+AGG | + | chr4_4:36948813-36948832 | None:intergenic | 40.0% | |
AGATTTGTGTAATTGGGCAG+CGG | - | chr4_4:36948848-36948867 | Msa0679330:intron | 40.0% | |
ATCTGTGGATTCCATCTCTA+CGG | + | chr4_4:36948882-36948901 | None:intergenic | 40.0% | |
!! | CAGCAAAGGTTCTAAATCTG+GGG | - | chr4_4:36949196-36949215 | Msa0679330:intron | 40.0% |
TTGACAACCAGCACATTTCA+TGG | + | chr4_4:36949225-36949244 | None:intergenic | 40.0% | |
!! | ATGAAATGTGCTGGTTGTCA+AGG | - | chr4_4:36949224-36949243 | Msa0679330:intron | 40.0% |
TTGTCAAGGAACTGGTATGA+AGG | - | chr4_4:36949238-36949257 | Msa0679330:intron | 40.0% | |
! | GCATTTGCTGGATCATTGAT+GGG | + | chr4_4:36949283-36949302 | None:intergenic | 40.0% |
! | TGCATTTGCTGGATCATTGA+TGG | + | chr4_4:36949284-36949303 | None:intergenic | 40.0% |
GCATCCTTGCAATGAATGTA+AGG | - | chr4_4:36949304-36949323 | Msa0679330:CDS | 40.0% | |
GTACCCTTACATTCATTGCA+AGG | + | chr4_4:36949311-36949330 | None:intergenic | 40.0% | |
! | TGCAATGAATGTAAGGGTAC+CGG | - | chr4_4:36949311-36949330 | Msa0679330:CDS | 40.0% |
CTTGAAGTTCATGTCGAGAA+AGG | - | chr4_4:36949404-36949423 | Msa0679330:intron | 40.0% | |
AGTCAGAAGATTACATTCCC+TGG | - | chr4_4:36949437-36949456 | Msa0679330:intron | 40.0% | |
CTCTCAACATACTGCTTCAT+CGG | + | chr4_4:36949468-36949487 | None:intergenic | 40.0% | |
ACAGTGTGTGCTCTACAAAA+AGG | + | chr4_4:36949641-36949660 | None:intergenic | 40.0% | |
CCAAGTGAGTAAGCACAAAT+TGG | + | chr4_4:36949689-36949708 | None:intergenic | 40.0% | |
CCAATTTGTGCTTACTCACT+TGG | - | chr4_4:36949686-36949705 | Msa0679330:intron | 40.0% | |
TTTGTGCTTACTCACTTGGA+TGG | - | chr4_4:36949690-36949709 | Msa0679330:intron | 40.0% | |
CTTCTTATCAAATCGAACCC+CGG | - | chr4_4:36949720-36949739 | Msa0679330:intron | 40.0% | |
TAATCAGAAAGCCAAACGGA+GGG | + | chr4_4:36949793-36949812 | None:intergenic | 40.0% | |
ATGTGTTGTCAGTTGAGCAT+TGG | + | chr4_4:36949927-36949946 | None:intergenic | 40.0% | |
ATAAATGGCCTCTGGTACAT+CGG | + | chr4_4:36950028-36950047 | None:intergenic | 40.0% | |
TACCAGAGGCCATTTATGAA+GGG | - | chr4_4:36950031-36950050 | Msa0679330:intron | 40.0% | |
GCTTTACATTCACTTCACTG+TGG | - | chr4_4:36950057-36950076 | Msa0679330:intron | 40.0% | |
! | TGATCAAGACTTAGAGTGTC+GGG | + | chr4_4:36950088-36950107 | None:intergenic | 40.0% |
CTGATCAAGACTTAGAGTGT+CGG | + | chr4_4:36950089-36950108 | None:intergenic | 40.0% | |
CTAAGTCTTGATCAGGTGAA+AGG | - | chr4_4:36950094-36950113 | Msa0679330:intron | 40.0% | |
ATATGGAAGAGGAGAATAGG+AGG | - | chr4_4:36950206-36950225 | Msa0679330:intron | 40.0% | |
ATAGGTTCTGTCCAACACTA+TGG | + | chr4_4:36950364-36950383 | None:intergenic | 40.0% | |
GACAGAACCTATGTAGTGTT+TGG | - | chr4_4:36950372-36950391 | Msa0679330:CDS | 40.0% | |
GTCTAGAAGAGTGGGAAGTA+CGG | + | chr4_4:36946350-36946369 | None:intergenic | 45.0% | |
GAAGAAGGGTCTAGAAGAGT+GGG | + | chr4_4:36946358-36946377 | None:intergenic | 45.0% | |
CTGGGATTGTGTTTGAGCTT+TGG | + | chr4_4:36946389-36946408 | None:intergenic | 45.0% | |
TATCCCATTCCCACTAAGTC+GGG | + | chr4_4:36947063-36947082 | None:intergenic | 45.0% | |
GTATAAGCTATGGGTCCGTT+TGG | - | chr4_4:36947140-36947159 | Msa0679330:intron | 45.0% | |
AGAGCTAGCACAAGCTTATG+AGG | - | chr4_4:36947693-36947712 | Msa0679330:CDS | 45.0% | |
GGATGCTCTTAAGGAAGGAA+TGG | - | chr4_4:36947762-36947781 | Msa0679330:CDS | 45.0% | |
! | TGACTTGTATGAACAGGTGG+TGG | - | chr4_4:36947912-36947931 | Msa0679330:intron | 45.0% |
AGATGTGGTTCATCCTCTCA+AGG | - | chr4_4:36947977-36947996 | Msa0679330:intron | 45.0% | |
TCATCCTCTCAAGGTCTCTT+TGG | - | chr4_4:36947986-36948005 | Msa0679330:intron | 45.0% | |
TCTTGTGCTCAAAGTGCAGT+GGG | - | chr4_4:36948057-36948076 | Msa0679330:intron | 45.0% | |
CAATCACTGCCCTACAGTTT+CGG | + | chr4_4:36948295-36948314 | None:intergenic | 45.0% | |
GGCAGTGATTGAAATGAGAG+AGG | - | chr4_4:36948304-36948323 | Msa0679330:intron | 45.0% | |
AAATGAGAGAGGCCTTGAGT+GGG | - | chr4_4:36948315-36948334 | Msa0679330:intron | 45.0% | |
GAATTGGGTATTCCCACTCA+AGG | + | chr4_4:36948330-36948349 | None:intergenic | 45.0% | |
ATTCCATCTCTACGGTTGTC+TGG | + | chr4_4:36948874-36948893 | None:intergenic | 45.0% | |
GACAAAAAACTCGGCATCTG+TGG | + | chr4_4:36948897-36948916 | None:intergenic | 45.0% | |
ATATCCCCAGTAACTGTGTC+TGG | + | chr4_4:36949564-36949583 | None:intergenic | 45.0% | |
! | TCTCTTACTGAGGCTTTGTG+TGG | - | chr4_4:36949660-36949679 | Msa0679330:intron | 45.0% |
CTAATCAGAAAGCCAAACGG+AGG | + | chr4_4:36949794-36949813 | None:intergenic | 45.0% | |
GTACCAGAGGCCATTTATGA+AGG | - | chr4_4:36950030-36950049 | Msa0679330:intron | 45.0% | |
!! | GATCAAGACTTAGAGTGTCG+GGG | + | chr4_4:36950087-36950106 | None:intergenic | 45.0% |
CGACACTCTAAGTCTTGATC+AGG | - | chr4_4:36950087-36950106 | Msa0679330:intron | 45.0% | |
TGATCAGGTGAAAGGTTTGC+AGG | - | chr4_4:36950102-36950121 | Msa0679330:intron | 45.0% | |
! | ACAACAGGAAGCATATGACG+AGG | - | chr4_4:36950240-36950259 | Msa0679330:intron | 45.0% |
AGGATGATGATATGCCTGGT+GGG | - | chr4_4:36950260-36950279 | Msa0679330:intron | 45.0% | |
GGAAGAAGGGTCTAGAAGAG+TGG | + | chr4_4:36946359-36946378 | None:intergenic | 50.0% | |
TCTTCTAGACCCTTCTTCCG+TGG | - | chr4_4:36946360-36946379 | Msa0679330:three_prime_UTR | 50.0% | |
CTTCTAGACCCTTCTTCCGT+GGG | - | chr4_4:36946361-36946380 | Msa0679330:three_prime_UTR | 50.0% | |
!! | TGTTTGAGCTTTGGGTCCCA+CGG | + | chr4_4:36946380-36946399 | None:intergenic | 50.0% |
GTGAGATGGAATGGATGGCT+GGG | + | chr4_4:36946407-36946426 | None:intergenic | 50.0% | |
AGTGAGATGGAATGGATGGC+TGG | + | chr4_4:36946408-36946427 | None:intergenic | 50.0% | |
GACATAGGGCTCGTTTGGAT+TGG | + | chr4_4:36947359-36947378 | None:intergenic | 50.0% | |
GGTGAGGATGCTCTTAAGGA+AGG | - | chr4_4:36947757-36947776 | Msa0679330:CDS | 50.0% | |
GCTCTTAAGGAAGGAATGGG+TGG | - | chr4_4:36947766-36947785 | Msa0679330:CDS | 50.0% | |
CTTAAGGAAGGAATGGGTGG+TGG | - | chr4_4:36947769-36947788 | Msa0679330:CDS | 50.0% | |
! | CTTGTATGAACAGGTGGTGG+TGG | - | chr4_4:36947915-36947934 | Msa0679330:intron | 50.0% |
TCCTCTCAAGGTCTCTTTGG+AGG | - | chr4_4:36947989-36948008 | Msa0679330:intron | 50.0% | |
TCCTCCAAAGAGACCTTGAG+AGG | + | chr4_4:36947993-36948012 | None:intergenic | 50.0% | |
GTCTTGTGCTCAAAGTGCAG+TGG | - | chr4_4:36948056-36948075 | Msa0679330:intron | 50.0% | |
GTGAGAATGCCTCACATTCC+AGG | + | chr4_4:36948197-36948216 | None:intergenic | 50.0% | |
GAAATGAGAGAGGCCTTGAG+TGG | - | chr4_4:36948314-36948333 | Msa0679330:intron | 50.0% | |
! | CTTTGGTGAAAAGGGTGTGG+CGG | + | chr4_4:36948432-36948451 | None:intergenic | 50.0% |
! | GCCACACCCTTTTCACCAAA+GGG | - | chr4_4:36948431-36948450 | Msa0679330:intron | 50.0% |
ACCCTTTGGTGAAAAGGGTG+TGG | + | chr4_4:36948435-36948454 | None:intergenic | 50.0% | |
!! | TGTGCTGGTTGTCAAGGAAC+TGG | - | chr4_4:36949230-36949249 | Msa0679330:intron | 50.0% |
TGCAAGGATGCTGCATTTGC+TGG | + | chr4_4:36949295-36949314 | None:intergenic | 50.0% | |
TTGCAGCCAGACACAGTTAC+TGG | - | chr4_4:36949555-36949574 | Msa0679330:intron | 50.0% | |
TGCAGCCAGACACAGTTACT+GGG | - | chr4_4:36949556-36949575 | Msa0679330:intron | 50.0% | |
GCACACACTGTCTCTTACTG+AGG | - | chr4_4:36949650-36949669 | Msa0679330:intron | 50.0% | |
ACCAGGCTTGACAACTTCTC+CGG | + | chr4_4:36949742-36949761 | None:intergenic | 50.0% | |
CTAGCATGTTACCCTCCGTT+TGG | - | chr4_4:36949779-36949798 | Msa0679330:intron | 50.0% | |
TGCCCTTCATAAATGGCCTC+TGG | + | chr4_4:36950036-36950055 | None:intergenic | 50.0% | |
GAGGAAACAGCAGCAACAAC+AGG | - | chr4_4:36950225-36950244 | Msa0679330:intron | 50.0% | |
GACGAGGATGATGATATGCC+TGG | - | chr4_4:36950256-36950275 | Msa0679330:intron | 50.0% | |
GAGGATGATGATATGCCTGG+TGG | - | chr4_4:36950259-36950278 | Msa0679330:intron | 50.0% | |
GGATGATGATATGCCTGGTG+GGG | - | chr4_4:36950261-36950280 | Msa0679330:intron | 50.0% | |
CTTTGGGTCCCACGGAAGAA+GGG | + | chr4_4:36946372-36946391 | None:intergenic | 55.0% | |
TCGGGATCACCACCCTTATC+AGG | + | chr4_4:36946696-36946715 | None:intergenic | 55.0% | |
TAAGGGTGGTGATCCCGAGA+AGG | - | chr4_4:36946698-36946717 | Msa0679330:three_prime_UTR | 55.0% | |
! | AAGGAAGGAATGGGTGGTGG+AGG | - | chr4_4:36947772-36947791 | Msa0679330:CDS | 55.0% |
!! | GTATGAACAGGTGGTGGTGG+TGG | - | chr4_4:36947918-36947937 | Msa0679330:intron | 55.0% |
GCAGAGACGTGGAGAAGATG+TGG | - | chr4_4:36947962-36947981 | Msa0679330:intron | 55.0% | |
GTGCTCAAAGTGCAGTGGGT+AGG | - | chr4_4:36948061-36948080 | Msa0679330:intron | 55.0% | |
! | CGCCACACCCTTTTCACCAA+AGG | - | chr4_4:36948430-36948449 | Msa0679330:intron | 55.0% |
GGGGCTTCCATGAAATGTGC+TGG | - | chr4_4:36949215-36949234 | Msa0679330:intron | 55.0% | |
! | GCTGGATCATTGATGGGCCA+AGG | + | chr4_4:36949277-36949296 | None:intergenic | 55.0% |
TCCACAGTGCAAGGGAGAGA+AGG | - | chr4_4:36949361-36949380 | Msa0679330:CDS | 55.0% | |
ACCTTCTCTCCCTTGCACTG+TGG | + | chr4_4:36949365-36949384 | None:intergenic | 55.0% | |
!! | CTGCTTCATCGGCTTCACCA+GGG | + | chr4_4:36949457-36949476 | None:intergenic | 55.0% |
!! | ACTGCTTCATCGGCTTCACC+AGG | + | chr4_4:36949458-36949477 | None:intergenic | 55.0% |
GCAGCCAGACACAGTTACTG+GGG | - | chr4_4:36949557-36949576 | Msa0679330:intron | 55.0% | |
CAGGCTTGACAACTTCTCCG+GGG | + | chr4_4:36949740-36949759 | None:intergenic | 55.0% | |
CCAGGCTTGACAACTTCTCC+GGG | + | chr4_4:36949741-36949760 | None:intergenic | 55.0% | |
AGGGAATGCCGATGTACCAG+AGG | - | chr4_4:36950017-36950036 | Msa0679330:intron | 55.0% | |
CATGGAGATCGATGAGTGCG+AGG | - | chr4_4:36950162-36950181 | Msa0679330:intron | 55.0% | |
! | GCTTTGGGTCCCACGGAAGA+AGG | + | chr4_4:36946373-36946392 | None:intergenic | 60.0% |
ATGTAGCCGGCCCGACTTAG+TGG | - | chr4_4:36947050-36947069 | Msa0679330:CDS | 60.0% | |
TGTAGCCGGCCCGACTTAGT+GGG | - | chr4_4:36947051-36947070 | Msa0679330:CDS | 60.0% | |
CCATTCCCACTAAGTCGGGC+CGG | + | chr4_4:36947059-36947078 | None:intergenic | 60.0% | |
CGGCCCGACTTAGTGGGAAT+GGG | - | chr4_4:36947057-36947076 | Msa0679330:CDS | 60.0% | |
!! | GAAGGAATGGGTGGTGGAGG+CGG | - | chr4_4:36947775-36947794 | Msa0679330:CDS | 60.0% |
!! | TGAACAGGTGGTGGTGGTGG+TGG | - | chr4_4:36947921-36947940 | Msa0679330:intron | 60.0% |
GTGGTGGTAGTAGCCGAGGA+CGG | - | chr4_4:36947937-36947956 | Msa0679330:intron | 60.0% | |
CGGCCAGACAACCGTAGAGA+TGG | - | chr4_4:36948868-36948887 | Msa0679330:intron | 60.0% | |
AGACCGCTGTCCACAGTGCA+AGG | - | chr4_4:36949352-36949371 | Msa0679330:CDS | 60.0% | |
GACCGCTGTCCACAGTGCAA+GGG | - | chr4_4:36949353-36949372 | Msa0679330:CDS | 60.0% | |
CTCCCTTGCACTGTGGACAG+CGG | + | chr4_4:36949358-36949377 | None:intergenic | 60.0% | |
CCCGGAGAAGTTGTCAAGCC+TGG | - | chr4_4:36949738-36949757 | Msa0679330:intron | 60.0% | |
ATATGCCTGGTGGGGCACAG+AGG | - | chr4_4:36950269-36950288 | Msa0679330:intron | 60.0% | |
TATGCCTGGTGGGGCACAGA+GGG | - | chr4_4:36950270-36950289 | Msa0679330:intron | 60.0% | |
CCGGCCCGACTTAGTGGGAA+TGG | - | chr4_4:36947056-36947075 | Msa0679330:CDS | 65.0% | |
!! | GGTGGTGGTGGTAGTAGCCG+AGG | - | chr4_4:36947933-36947952 | Msa0679330:intron | 65.0% |
GTGGTAGTAGCCGAGGACGG+AGG | - | chr4_4:36947940-36947959 | Msa0679330:intron | 65.0% | |
CACGTCTCTGCCTCCGTCCT+CGG | + | chr4_4:36947953-36947972 | None:intergenic | 65.0% | |
TGTACCCTCTGTGCCCCACC+AGG | + | chr4_4:36950277-36950296 | None:intergenic | 65.0% | |
!! | GGAATGGGTGGTGGAGGCGG+TGG | - | chr4_4:36947778-36947797 | Msa0679330:CDS | 70.0% |
!! | ATGGGTGGTGGAGGCGGTGG+TGG | - | chr4_4:36947781-36947800 | Msa0679330:CDS | 70.0% |
CGAGGACGGAGGCAGAGACG+TGG | - | chr4_4:36947951-36947970 | Msa0679330:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_4 | gene | 36946337 | 36950752 | 36946337 | ID=Msa0679330;Name=Msa0679330 |
chr4_4 | mRNA | 36946337 | 36950752 | 36946337 | ID=Msa0679330-mRNA-1;Parent=Msa0679330;Name=Msa0679330-mRNA-1;_AED=0.04;_eAED=0.04;_QI=233|1|1|1|0.83|0.71|7|349|415 |
chr4_4 | exon | 36946337 | 36946505 | 36946337 | ID=Msa0679330-mRNA-1:exon:8736;Parent=Msa0679330-mRNA-1 |
chr4_4 | exon | 36946597 | 36947096 | 36946597 | ID=Msa0679330-mRNA-1:exon:8735;Parent=Msa0679330-mRNA-1 |
chr4_4 | exon | 36947330 | 36947528 | 36947330 | ID=Msa0679330-mRNA-1:exon:8734;Parent=Msa0679330-mRNA-1 |
chr4_4 | exon | 36947614 | 36947890 | 36947614 | ID=Msa0679330-mRNA-1:exon:8733;Parent=Msa0679330-mRNA-1 |
chr4_4 | exon | 36949011 | 36949161 | 36949011 | ID=Msa0679330-mRNA-1:exon:8732;Parent=Msa0679330-mRNA-1 |
chr4_4 | exon | 36949251 | 36949401 | 36949251 | ID=Msa0679330-mRNA-1:exon:8731;Parent=Msa0679330-mRNA-1 |
chr4_4 | exon | 36950370 | 36950752 | 36950370 | ID=Msa0679330-mRNA-1:exon:8730;Parent=Msa0679330-mRNA-1 |
chr4_4 | five_prime_UTR | 36950520 | 36950752 | 36950520 | ID=Msa0679330-mRNA-1:five_prime_utr;Parent=Msa0679330-mRNA-1 |
chr4_4 | CDS | 36950370 | 36950519 | 36950370 | ID=Msa0679330-mRNA-1:cds;Parent=Msa0679330-mRNA-1 |
chr4_4 | CDS | 36949251 | 36949401 | 36949251 | ID=Msa0679330-mRNA-1:cds;Parent=Msa0679330-mRNA-1 |
chr4_4 | CDS | 36949011 | 36949161 | 36949011 | ID=Msa0679330-mRNA-1:cds;Parent=Msa0679330-mRNA-1 |
chr4_4 | CDS | 36947614 | 36947890 | 36947614 | ID=Msa0679330-mRNA-1:cds;Parent=Msa0679330-mRNA-1 |
chr4_4 | CDS | 36947330 | 36947528 | 36947330 | ID=Msa0679330-mRNA-1:cds;Parent=Msa0679330-mRNA-1 |
chr4_4 | CDS | 36946777 | 36947096 | 36946777 | ID=Msa0679330-mRNA-1:cds;Parent=Msa0679330-mRNA-1 |
chr4_4 | three_prime_UTR | 36946597 | 36946776 | 36946597 | ID=Msa0679330-mRNA-1:three_prime_utr;Parent=Msa0679330-mRNA-1 |
chr4_4 | three_prime_UTR | 36946337 | 36946505 | 36946337 | ID=Msa0679330-mRNA-1:three_prime_utr;Parent=Msa0679330-mRNA-1 |
Gene Sequence |
Protein sequence |