Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0681960 | XP_003606331.2 | 96.319 | 326 | 10 | 2 | 1 | 325 | 11 | 335 | 0.0 | 641 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0681960 | sp|Q0V7X4|FIT_ARATH | 52.294 | 327 | 130 | 11 | 7 | 323 | 7 | 317 | 1.86e-94 | 286 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0681960 | G7JN98 | 96.319 | 326 | 10 | 2 | 1 | 325 | 11 | 335 | 0.0 | 641 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0681960 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0681960 | Msa1148210 | 0.804246 | 2.368691e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0681960 | MtrunA17_Chr4g0028071 | 96.319 | 326 | 10 | 2 | 1 | 325 | 11 | 335 | 0.0 | 641 |
| Msa0681960 | MtrunA17_Chr2g0320291 | 63.438 | 320 | 93 | 9 | 13 | 323 | 9 | 313 | 1.01e-128 | 370 |
| Msa0681960 | MtrunA17_Chr8g0365711 | 30.928 | 194 | 107 | 7 | 130 | 309 | 235 | 415 | 3.94e-19 | 87.4 |
| Msa0681960 | MtrunA17_Chr1g0211081 | 34.028 | 144 | 68 | 4 | 134 | 250 | 312 | 455 | 3.05e-17 | 82.4 |
| Msa0681960 | MtrunA17_Chr8g0366751 | 29.310 | 174 | 109 | 5 | 132 | 292 | 452 | 624 | 3.09e-16 | 79.3 |
| Msa0681960 | MtrunA17_Chr2g0298751 | 31.481 | 162 | 98 | 4 | 138 | 287 | 51 | 211 | 3.48e-16 | 77.0 |
| Msa0681960 | MtrunA17_Chr3g0131691 | 33.333 | 138 | 89 | 1 | 124 | 261 | 283 | 417 | 7.81e-16 | 78.2 |
| Msa0681960 | MtrunA17_Chr5g0411341 | 27.551 | 196 | 123 | 6 | 105 | 282 | 451 | 645 | 2.45e-15 | 76.6 |
| Msa0681960 | MtrunA17_Chr4g0048851 | 31.646 | 158 | 91 | 5 | 138 | 290 | 46 | 191 | 1.71e-14 | 71.2 |
| Msa0681960 | MtrunA17_Chr7g0252041 | 50.000 | 68 | 31 | 1 | 138 | 205 | 285 | 349 | 1.55e-13 | 71.2 |
| Msa0681960 | MtrunA17_Chr7g0275821 | 30.128 | 156 | 97 | 5 | 143 | 298 | 256 | 399 | 3.21e-13 | 70.1 |
| Msa0681960 | MtrunA17_Chr8g0346161 | 26.601 | 203 | 110 | 7 | 103 | 282 | 247 | 433 | 2.20e-12 | 67.4 |
| Msa0681960 | MtrunA17_Chr7g0260841 | 28.249 | 177 | 96 | 6 | 132 | 305 | 345 | 493 | 1.44e-11 | 65.1 |
| Msa0681960 | MtrunA17_Chr8g0346151 | 34.375 | 96 | 55 | 1 | 105 | 192 | 237 | 332 | 2.53e-11 | 64.3 |
| Msa0681960 | MtrunA17_Chr4g0054571 | 27.068 | 133 | 91 | 2 | 141 | 267 | 152 | 284 | 5.04e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0681960 | AT2G28160.1 | 52.294 | 327 | 130 | 11 | 7 | 323 | 7 | 317 | 1.89e-95 | 286 |
| Msa0681960 | AT2G28160.2 | 51.402 | 321 | 130 | 11 | 7 | 317 | 7 | 311 | 2.72e-91 | 275 |
| Msa0681960 | AT2G16910.1 | 36.416 | 173 | 84 | 4 | 137 | 284 | 312 | 483 | 3.34e-23 | 100 |
| Msa0681960 | AT5G57150.5 | 38.854 | 157 | 86 | 4 | 138 | 286 | 53 | 207 | 6.85e-23 | 95.1 |
| Msa0681960 | AT5G57150.2 | 38.854 | 157 | 86 | 4 | 138 | 286 | 54 | 208 | 7.46e-23 | 95.1 |
| Msa0681960 | AT5G57150.3 | 38.854 | 157 | 86 | 4 | 138 | 286 | 54 | 208 | 7.72e-23 | 95.1 |
| Msa0681960 | AT5G57150.1 | 38.854 | 157 | 86 | 4 | 138 | 286 | 53 | 207 | 1.12e-22 | 95.1 |
| Msa0681960 | AT5G57150.4 | 38.854 | 157 | 86 | 4 | 138 | 286 | 54 | 208 | 2.66e-22 | 94.7 |
| Msa0681960 | AT4G29930.6 | 37.063 | 143 | 81 | 3 | 138 | 279 | 53 | 187 | 6.50e-22 | 92.8 |
| Msa0681960 | AT4G29930.5 | 35.484 | 155 | 90 | 3 | 138 | 292 | 53 | 197 | 2.01e-21 | 91.7 |
| Msa0681960 | AT4G29930.2 | 36.620 | 142 | 80 | 3 | 138 | 279 | 53 | 184 | 5.90e-21 | 90.1 |
| Msa0681960 | AT4G29930.3 | 34.615 | 182 | 84 | 5 | 138 | 292 | 53 | 226 | 3.63e-20 | 88.6 |
| Msa0681960 | AT4G29930.7 | 34.615 | 182 | 84 | 5 | 138 | 292 | 53 | 226 | 3.63e-20 | 88.6 |
| Msa0681960 | AT4G29930.1 | 35.503 | 169 | 74 | 5 | 138 | 279 | 53 | 213 | 1.10e-19 | 87.0 |
| Msa0681960 | AT4G29930.4 | 43.119 | 109 | 44 | 3 | 138 | 235 | 53 | 154 | 6.60e-18 | 80.5 |
| Msa0681960 | AT1G10610.3 | 35.000 | 120 | 75 | 2 | 133 | 249 | 161 | 280 | 4.76e-15 | 75.5 |
| Msa0681960 | AT1G10610.2 | 35.000 | 120 | 75 | 2 | 133 | 249 | 228 | 347 | 6.67e-15 | 75.5 |
| Msa0681960 | AT5G46760.1 | 25.654 | 191 | 126 | 6 | 104 | 282 | 374 | 560 | 7.61e-15 | 75.5 |
| Msa0681960 | AT1G10610.1 | 35.000 | 120 | 75 | 2 | 133 | 249 | 258 | 377 | 8.29e-15 | 75.1 |
| Msa0681960 | AT2G46510.1 | 37.500 | 104 | 60 | 2 | 132 | 232 | 385 | 486 | 8.81e-15 | 75.5 |
| Msa0681960 | AT1G01260.1 | 32.164 | 171 | 84 | 5 | 126 | 288 | 412 | 558 | 1.61e-14 | 74.7 |
| Msa0681960 | AT1G01260.2 | 32.164 | 171 | 84 | 5 | 126 | 288 | 412 | 558 | 1.61e-14 | 74.7 |
| Msa0681960 | AT1G01260.3 | 32.164 | 171 | 84 | 5 | 126 | 288 | 412 | 558 | 1.61e-14 | 74.7 |
| Msa0681960 | AT4G17880.1 | 28.571 | 140 | 98 | 2 | 143 | 282 | 420 | 557 | 1.38e-13 | 72.0 |
| Msa0681960 | AT1G12860.2 | 39.759 | 83 | 47 | 1 | 138 | 220 | 266 | 345 | 3.25e-13 | 70.5 |
| Msa0681960 | AT1G12860.1 | 39.759 | 83 | 47 | 1 | 138 | 220 | 266 | 345 | 3.65e-13 | 70.5 |
| Msa0681960 | AT3G26744.1 | 48.529 | 68 | 32 | 1 | 138 | 205 | 306 | 370 | 4.22e-13 | 70.1 |
| Msa0681960 | AT3G26744.4 | 48.529 | 68 | 32 | 1 | 138 | 205 | 306 | 370 | 4.22e-13 | 70.1 |
| Msa0681960 | AT3G26744.2 | 48.529 | 68 | 32 | 1 | 138 | 205 | 306 | 370 | 4.22e-13 | 70.1 |
| Msa0681960 | AT3G26744.6 | 48.529 | 68 | 32 | 1 | 138 | 205 | 306 | 370 | 4.33e-13 | 70.1 |
| Msa0681960 | AT4G21330.1 | 25.654 | 191 | 134 | 3 | 106 | 294 | 4 | 188 | 7.96e-13 | 67.0 |
| Msa0681960 | AT1G32640.1 | 28.655 | 171 | 84 | 6 | 132 | 282 | 442 | 594 | 8.89e-13 | 69.3 |
| Msa0681960 | AT5G10570.1 | 34.459 | 148 | 73 | 5 | 127 | 267 | 134 | 264 | 5.26e-11 | 63.2 |
| Msa0681960 | AT5G46830.1 | 27.389 | 157 | 96 | 4 | 143 | 293 | 347 | 491 | 6.97e-11 | 63.5 |
Find 56 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGTTCAGAATTCAAATT+TGG | 0.148271 | 4_4:-42895004 | Msa0681960:CDS |
| AAATTTGGCAGGTTGATTTC+TGG | 0.184628 | 4_4:+42894638 | None:intergenic |
| AACCTCAGCCTTAAGCTTCT+TGG | 0.225200 | 4_4:+42895360 | None:intergenic |
| CAAAACTTTGATTCATTATA+AGG | 0.232350 | 4_4:+42896128 | None:intergenic |
| ATCACCCATAGCTTTAAATT+TGG | 0.237169 | 4_4:+42894623 | None:intergenic |
| AATTGATCCTTGATGAGTTT+TGG | 0.238548 | 4_4:+42895309 | None:intergenic |
| AAGCTTAAGGCTGAGGTTGC+AGG | 0.310327 | 4_4:-42895355 | Msa0681960:CDS |
| TTGATGAATTGATCAAAGTT+TGG | 0.317687 | 4_4:+42896205 | None:intergenic |
| GTTAAGATAGTATGCAATAA+AGG | 0.359876 | 4_4:-42895078 | Msa0681960:CDS |
| TTGGATAAGGCTTCAATCAT+TGG | 0.362149 | 4_4:-42895421 | Msa0681960:CDS |
| TTAATGTTTGCTAGTGTCTC+TGG | 0.366559 | 4_4:+42896262 | None:intergenic |
| AAGTGTACCTTAGTTATATT+CGG | 0.367404 | 4_4:+42895788 | None:intergenic |
| AATATATGTATAGTTGGATA+AGG | 0.380535 | 4_4:-42895434 | Msa0681960:intron |
| TTATCTATGTTGTGATCAAA+TGG | 0.384556 | 4_4:+42896073 | None:intergenic |
| GCTTTACGCATTGCGTTCAT+TGG | 0.387836 | 4_4:-42895813 | Msa0681960:CDS |
| ACCTGCCAAATTTAAAGCTA+TGG | 0.396521 | 4_4:-42894628 | Msa0681960:CDS |
| CGTAAAGCTTATCCTTCATT+CGG | 0.412112 | 4_4:+42895828 | None:intergenic |
| CCCATAGCTTTAAATTTGGC+AGG | 0.425488 | 4_4:+42894627 | None:intergenic |
| CAATTCATCAATTTGATTCG+TGG | 0.448543 | 4_4:-42896193 | Msa0681960:CDS |
| AATTCATCAATTTGATTCGT+GGG | 0.449395 | 4_4:-42896192 | Msa0681960:CDS |
| TTTGATCCTACTTCTTCACT+TGG | 0.449750 | 4_4:-42896037 | Msa0681960:CDS |
| AAGGTATGAATTCAAAGCCT+TGG | 0.451801 | 4_4:+42894585 | None:intergenic |
| GGACTTGAAGCATCATTAGC+AGG | 0.454546 | 4_4:-42895334 | Msa0681960:CDS |
| TAGTATGCAATAAAGGAGAA+AGG | 0.460470 | 4_4:-42895071 | Msa0681960:CDS |
| AATATGCAAGAAAATTGTCC+AGG | 0.466755 | 4_4:-42895245 | Msa0681960:intron |
| CTTTGGTTTCTGAGAGGAGG+AGG | 0.467532 | 4_4:-42895856 | Msa0681960:CDS |
| TGAAAATAGGTGAAAGACTC+TGG | 0.467988 | 4_4:-42894662 | Msa0681960:intron |
| AAATGATAGATCCAAGACTT+TGG | 0.473297 | 4_4:-42895873 | Msa0681960:CDS |
| ATTGGTTCCGAATATAACTA+AGG | 0.477975 | 4_4:-42895795 | Msa0681960:intron |
| TATCTATGTTGTGATCAAAT+GGG | 0.486497 | 4_4:+42896074 | None:intergenic |
| TGTTGTTGTTGTTGCAGGAG+TGG | 0.487793 | 4_4:+42895946 | None:intergenic |
| CCTCTCAGAAACCAAAGTCT+TGG | 0.490550 | 4_4:+42895862 | None:intergenic |
| TTGTGATCAAATGGGTTTGA+AGG | 0.490633 | 4_4:+42896082 | None:intergenic |
| ATCACAAGCCAAGAAGCTTA+AGG | 0.495865 | 4_4:-42895368 | Msa0681960:CDS |
| CATCAATTTGATTCGTGGGG+AGG | 0.498663 | 4_4:-42896188 | Msa0681960:CDS |
| AGTATGCAATAAAGGAGAAA+GGG | 0.511962 | 4_4:-42895070 | Msa0681960:CDS |
| ATGTGTCAAGCGTGAAAAGA+AGG | 0.518768 | 4_4:+42894566 | None:intergenic |
| ATGTTTCAAGTGGATGAAAG+AGG | 0.519776 | 4_4:-42895108 | Msa0681960:CDS |
| CCTGCCAAATTTAAAGCTAT+GGG | 0.525800 | 4_4:-42894627 | Msa0681960:CDS |
| AAAGAACCAAGTGAAGAAGT+AGG | 0.527298 | 4_4:+42896031 | None:intergenic |
| AATTTGGCAACTGTTTCTGA+TGG | 0.530693 | 4_4:-42894988 | Msa0681960:CDS |
| GAGGAGGCGAAGCCGAATGA+AGG | 0.530731 | 4_4:-42895840 | Msa0681960:CDS |
| TGTTTCAAGTGGATGAAAGA+GGG | 0.533128 | 4_4:-42895107 | Msa0681960:CDS |
| ATCACCACTTGTAGTTGTTG+TGG | 0.544215 | 4_4:+42895913 | None:intergenic |
| AGCCAAGAAGCTTAAGGCTG+AGG | 0.549244 | 4_4:-42895362 | Msa0681960:CDS |
| AGACTTTGGTTTCTGAGAGG+AGG | 0.567716 | 4_4:-42895859 | Msa0681960:CDS |
| GTAGATTGATATGTTTCAAG+TGG | 0.578490 | 4_4:-42895118 | Msa0681960:intron |
| ATTCAATTTACTAACAACAA+TGG | 0.579590 | 4_4:-42895271 | Msa0681960:CDS |
| GCAGGGTCCAAAACTCATCA+AGG | 0.584365 | 4_4:-42895316 | Msa0681960:CDS |
| ATGGGTTTGAAGGAAATGAA+AGG | 0.592796 | 4_4:+42896092 | None:intergenic |
| CCAAGACTTTGGTTTCTGAG+AGG | 0.603254 | 4_4:-42895862 | Msa0681960:CDS |
| GAATTAAGAGTAGAAAATGA+TGG | 0.612562 | 4_4:-42895980 | Msa0681960:CDS |
| GACTTGAAGCATCATTAGCA+GGG | 0.620551 | 4_4:-42895333 | Msa0681960:CDS |
| ATTACCACAACAACTACAAG+TGG | 0.626061 | 4_4:-42895917 | Msa0681960:CDS |
| ATTCATCAATTTGATTCGTG+GGG | 0.631333 | 4_4:-42896191 | Msa0681960:CDS |
| ATGCAATAAAGGAGAAAGGG+TGG | 0.638631 | 4_4:-42895067 | Msa0681960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTAATATATGTATAGT+TGG | - | chr4_4:42895405-42895424 | Msa0681960:CDS | 10.0% |
| !! | ATATTTAATATATGTATAGT+TGG | - | chr4_4:42895405-42895424 | Msa0681960:CDS | 10.0% |
| !!! | TTAGTAAATTGAATCTTTTT+GGG | + | chr4_4:42895568-42895587 | None:intergenic | 15.0% |
| !!! | AAACAAAATTACATGTTTTA+AGG | - | chr4_4:42896010-42896029 | Msa0681960:CDS | 15.0% |
| !!! | TTTTTATTACCATATCATTT+AGG | + | chr4_4:42896098-42896117 | None:intergenic | 15.0% |
| !! | CAAATAATGAAATAGAATAA+TGG | + | chr4_4:42896131-42896150 | None:intergenic | 15.0% |
| !!! | TTAGTAAATTGAATCTTTTT+GGG | + | chr4_4:42895568-42895587 | None:intergenic | 15.0% |
| !!! | AAACAAAATTACATGTTTTA+AGG | - | chr4_4:42896010-42896029 | Msa0681960:CDS | 15.0% |
| !!! | TTTTTATTACCATATCATTT+AGG | + | chr4_4:42896098-42896117 | None:intergenic | 15.0% |
| !! | CAAATAATGAAATAGAATAA+TGG | + | chr4_4:42896131-42896150 | None:intergenic | 15.0% |
| !! | CAAAACTTTGATTCATTATA+AGG | + | chr4_4:42894720-42894739 | None:intergenic | 20.0% |
| !!! | CTCCAAAATTTTTTATATTG+CGG | - | chr4_4:42895138-42895157 | Msa0681960:intron | 20.0% |
| !! | ATGATTGTATGAAATTTACA+AGG | + | chr4_4:42895321-42895340 | None:intergenic | 20.0% |
| !! | AATTATACATACTTAAGTCA+AGG | + | chr4_4:42895379-42895398 | None:intergenic | 20.0% |
| !! | AATATATGTATAGTTGGATA+AGG | - | chr4_4:42895411-42895430 | Msa0681960:CDS | 20.0% |
| !!! | TAGTAAATTGAATCTTTTTG+GGG | + | chr4_4:42895567-42895586 | None:intergenic | 20.0% |
| !!! | GTTAGTAAATTGAATCTTTT+TGG | + | chr4_4:42895569-42895588 | None:intergenic | 20.0% |
| !! | ATTCAATTTACTAACAACAA+TGG | - | chr4_4:42895574-42895593 | Msa0681960:intron | 20.0% |
| !! | ATGTAATTTCATAATTCGTA+GGG | - | chr4_4:42896042-42896061 | Msa0681960:CDS | 20.0% |
| !! | ATGTGTATTATGTTGAAAAT+AGG | - | chr4_4:42896170-42896189 | Msa0681960:CDS | 20.0% |
| !! | CAAAACTTTGATTCATTATA+AGG | + | chr4_4:42894720-42894739 | None:intergenic | 20.0% |
| !!! | CTCCAAAATTTTTTATATTG+CGG | - | chr4_4:42895138-42895157 | Msa0681960:intron | 20.0% |
| !! | ATGATTGTATGAAATTTACA+AGG | + | chr4_4:42895321-42895340 | None:intergenic | 20.0% |
| !! | AATTATACATACTTAAGTCA+AGG | + | chr4_4:42895379-42895398 | None:intergenic | 20.0% |
| !! | AATATATGTATAGTTGGATA+AGG | - | chr4_4:42895411-42895430 | Msa0681960:CDS | 20.0% |
| !!! | TAGTAAATTGAATCTTTTTG+GGG | + | chr4_4:42895567-42895586 | None:intergenic | 20.0% |
| !!! | GTTAGTAAATTGAATCTTTT+TGG | + | chr4_4:42895569-42895588 | None:intergenic | 20.0% |
| !! | ATTCAATTTACTAACAACAA+TGG | - | chr4_4:42895574-42895593 | Msa0681960:intron | 20.0% |
| !! | ATGTAATTTCATAATTCGTA+GGG | - | chr4_4:42896042-42896061 | Msa0681960:CDS | 20.0% |
| !! | ATGTGTATTATGTTGAAAAT+AGG | - | chr4_4:42896170-42896189 | Msa0681960:CDS | 20.0% |
| ! | TTGATGAATTGATCAAAGTT+TGG | + | chr4_4:42894643-42894662 | None:intergenic | 25.0% |
| !! | AATTCATCAATTTGATTCGT+GGG | - | chr4_4:42894653-42894672 | Msa0681960:CDS | 25.0% |
| ! | TATCTATGTTGTGATCAAAT+GGG | + | chr4_4:42894774-42894793 | None:intergenic | 25.0% |
| ! | TTATCTATGTTGTGATCAAA+TGG | + | chr4_4:42894775-42894794 | None:intergenic | 25.0% |
| ! | GAATTAAGAGTAGAAAATGA+TGG | - | chr4_4:42894865-42894884 | Msa0681960:intron | 25.0% |
| ! | AAGTGTACCTTAGTTATATT+CGG | + | chr4_4:42895060-42895079 | None:intergenic | 25.0% |
| !!! | ATGGTTTTAAATTGTTGTTG+CGG | - | chr4_4:42895081-42895100 | Msa0681960:CDS | 25.0% |
| !!! | GGTATTTTGACACAATATAA+AGG | + | chr4_4:42895119-42895138 | None:intergenic | 25.0% |
| !! | CGCAATATAAAAAATTTTGG+AGG | + | chr4_4:42895140-42895159 | None:intergenic | 25.0% |
| ! | CTTATAATCACTATCCAAAA+TGG | - | chr4_4:42895269-42895288 | Msa0681960:CDS | 25.0% |
| ! | AGATATTTATCAAACAAACC+TGG | + | chr4_4:42895621-42895640 | None:intergenic | 25.0% |
| ! | GTTAAGATAGTATGCAATAA+AGG | - | chr4_4:42895767-42895786 | Msa0681960:intron | 25.0% |
| ! | CAATGTTCAGAATTCAAATT+TGG | - | chr4_4:42895841-42895860 | Msa0681960:CDS | 25.0% |
| ! | ATAGAAATTAACTACAGAGA+GGG | + | chr4_4:42895920-42895939 | None:intergenic | 25.0% |
| ! | AATAGAAATTAACTACAGAG+AGG | + | chr4_4:42895921-42895940 | None:intergenic | 25.0% |
| ! | CATGTAATTTCATAATTCGT+AGG | - | chr4_4:42896041-42896060 | Msa0681960:CDS | 25.0% |
| ! | CTAAAAACACCTAAATGATA+TGG | - | chr4_4:42896086-42896105 | Msa0681960:CDS | 25.0% |
| ! | TTGATGAATTGATCAAAGTT+TGG | + | chr4_4:42894643-42894662 | None:intergenic | 25.0% |
| !! | AATTCATCAATTTGATTCGT+GGG | - | chr4_4:42894653-42894672 | Msa0681960:CDS | 25.0% |
| ! | TATCTATGTTGTGATCAAAT+GGG | + | chr4_4:42894774-42894793 | None:intergenic | 25.0% |
| ! | TTATCTATGTTGTGATCAAA+TGG | + | chr4_4:42894775-42894794 | None:intergenic | 25.0% |
| ! | GAATTAAGAGTAGAAAATGA+TGG | - | chr4_4:42894865-42894884 | Msa0681960:intron | 25.0% |
| ! | AAGTGTACCTTAGTTATATT+CGG | + | chr4_4:42895060-42895079 | None:intergenic | 25.0% |
| !!! | ATGGTTTTAAATTGTTGTTG+CGG | - | chr4_4:42895081-42895100 | Msa0681960:CDS | 25.0% |
| !!! | GGTATTTTGACACAATATAA+AGG | + | chr4_4:42895119-42895138 | None:intergenic | 25.0% |
| !! | CGCAATATAAAAAATTTTGG+AGG | + | chr4_4:42895140-42895159 | None:intergenic | 25.0% |
| ! | CTTATAATCACTATCCAAAA+TGG | - | chr4_4:42895269-42895288 | Msa0681960:CDS | 25.0% |
| ! | AGATATTTATCAAACAAACC+TGG | + | chr4_4:42895621-42895640 | None:intergenic | 25.0% |
| ! | GTTAAGATAGTATGCAATAA+AGG | - | chr4_4:42895767-42895786 | Msa0681960:intron | 25.0% |
| ! | CAATGTTCAGAATTCAAATT+TGG | - | chr4_4:42895841-42895860 | Msa0681960:CDS | 25.0% |
| ! | ATAGAAATTAACTACAGAGA+GGG | + | chr4_4:42895920-42895939 | None:intergenic | 25.0% |
| ! | AATAGAAATTAACTACAGAG+AGG | + | chr4_4:42895921-42895940 | None:intergenic | 25.0% |
| ! | CATGTAATTTCATAATTCGT+AGG | - | chr4_4:42896041-42896060 | Msa0681960:CDS | 25.0% |
| ! | CTAAAAACACCTAAATGATA+TGG | - | chr4_4:42896086-42896105 | Msa0681960:CDS | 25.0% |
| ! | CAATTCATCAATTTGATTCG+TGG | - | chr4_4:42894652-42894671 | Msa0681960:CDS | 30.0% |
| ! | ATTCATCAATTTGATTCGTG+GGG | - | chr4_4:42894654-42894673 | Msa0681960:CDS | 30.0% |
| !! | GATCTATCATTTTTCGACTT+TGG | + | chr4_4:42894964-42894983 | None:intergenic | 30.0% |
| AAATGATAGATCCAAGACTT+TGG | - | chr4_4:42894972-42894991 | Msa0681960:CDS | 30.0% | |
| ! | ATTGGTTCCGAATATAACTA+AGG | - | chr4_4:42895050-42895069 | Msa0681960:CDS | 30.0% |
| TATAACTAAGGTACACTTCA+TGG | - | chr4_4:42895062-42895081 | Msa0681960:CDS | 30.0% | |
| ! | GGCCGCAATATAAAAAATTT+TGG | + | chr4_4:42895143-42895162 | None:intergenic | 30.0% |
| AAGCAATTTCGTCTCATAAA+CGG | + | chr4_4:42895245-42895264 | None:intergenic | 30.0% | |
| ! | ACAATGCATCTTAACCATTT+TGG | + | chr4_4:42895286-42895305 | None:intergenic | 30.0% |
| ! | AATTGATCCTTGATGAGTTT+TGG | + | chr4_4:42895539-42895558 | None:intergenic | 30.0% |
| AATATGCAAGAAAATTGTCC+AGG | - | chr4_4:42895600-42895619 | Msa0681960:intron | 30.0% | |
| GTAGATTGATATGTTTCAAG+TGG | - | chr4_4:42895727-42895746 | Msa0681960:intron | 30.0% | |
| TAGTATGCAATAAAGGAGAA+AGG | - | chr4_4:42895774-42895793 | Msa0681960:intron | 30.0% | |
| AGTATGCAATAAAGGAGAAA+GGG | - | chr4_4:42895775-42895794 | Msa0681960:intron | 30.0% | |
| !! | ATCACCCATAGCTTTAAATT+TGG | + | chr4_4:42896225-42896244 | None:intergenic | 30.0% |
| ! | ATTAGTGCTTTTCTAAACCA+AGG | - | chr4_4:42896243-42896262 | Msa0681960:CDS | 30.0% |
| ! | CAATTCATCAATTTGATTCG+TGG | - | chr4_4:42894652-42894671 | Msa0681960:CDS | 30.0% |
| ! | ATTCATCAATTTGATTCGTG+GGG | - | chr4_4:42894654-42894673 | Msa0681960:CDS | 30.0% |
| !! | GATCTATCATTTTTCGACTT+TGG | + | chr4_4:42894964-42894983 | None:intergenic | 30.0% |
| AAATGATAGATCCAAGACTT+TGG | - | chr4_4:42894972-42894991 | Msa0681960:CDS | 30.0% | |
| ! | ATTGGTTCCGAATATAACTA+AGG | - | chr4_4:42895050-42895069 | Msa0681960:CDS | 30.0% |
| TATAACTAAGGTACACTTCA+TGG | - | chr4_4:42895062-42895081 | Msa0681960:CDS | 30.0% | |
| ! | GGCCGCAATATAAAAAATTT+TGG | + | chr4_4:42895143-42895162 | None:intergenic | 30.0% |
| AAGCAATTTCGTCTCATAAA+CGG | + | chr4_4:42895245-42895264 | None:intergenic | 30.0% | |
| ! | ACAATGCATCTTAACCATTT+TGG | + | chr4_4:42895286-42895305 | None:intergenic | 30.0% |
| ! | AATTGATCCTTGATGAGTTT+TGG | + | chr4_4:42895539-42895558 | None:intergenic | 30.0% |
| AATATGCAAGAAAATTGTCC+AGG | - | chr4_4:42895600-42895619 | Msa0681960:intron | 30.0% | |
| GTAGATTGATATGTTTCAAG+TGG | - | chr4_4:42895727-42895746 | Msa0681960:intron | 30.0% | |
| TAGTATGCAATAAAGGAGAA+AGG | - | chr4_4:42895774-42895793 | Msa0681960:intron | 30.0% | |
| AGTATGCAATAAAGGAGAAA+GGG | - | chr4_4:42895775-42895794 | Msa0681960:intron | 30.0% | |
| !! | ATCACCCATAGCTTTAAATT+TGG | + | chr4_4:42896225-42896244 | None:intergenic | 30.0% |
| ! | ATTAGTGCTTTTCTAAACCA+AGG | - | chr4_4:42896243-42896262 | Msa0681960:CDS | 30.0% |
| ! | TTAATGTTTGCTAGTGTCTC+TGG | + | chr4_4:42894586-42894605 | None:intergenic | 35.0% |
| ATGGGTTTGAAGGAAATGAA+AGG | + | chr4_4:42894756-42894775 | None:intergenic | 35.0% | |
| ! | TTGTGATCAAATGGGTTTGA+AGG | + | chr4_4:42894766-42894785 | None:intergenic | 35.0% |
| TTTGATCCTACTTCTTCACT+TGG | - | chr4_4:42894808-42894827 | Msa0681960:intron | 35.0% | |
| AAAGAACCAAGTGAAGAAGT+AGG | + | chr4_4:42894817-42894836 | None:intergenic | 35.0% | |
| !!! | GGTTCTTTCTCTTGTTTTGA+TGG | - | chr4_4:42894829-42894848 | Msa0681960:intron | 35.0% |
| !!! | TTGTTTTGATGGAGAAGCTA+AGG | - | chr4_4:42894840-42894859 | Msa0681960:intron | 35.0% |
| !!! | TGTTTTGATGGAGAAGCTAA+GGG | - | chr4_4:42894841-42894860 | Msa0681960:intron | 35.0% |
| ATTACCACAACAACTACAAG+TGG | - | chr4_4:42894928-42894947 | Msa0681960:intron | 35.0% | |
| CGTAAAGCTTATCCTTCATT+CGG | + | chr4_4:42895020-42895039 | None:intergenic | 35.0% | |
| TTAAATAGCGATCATCAACG+TGG | + | chr4_4:42895164-42895183 | None:intergenic | 35.0% | |
| TTGGATAAGGCTTCAATCAT+TGG | - | chr4_4:42895424-42895443 | Msa0681960:CDS | 35.0% | |
| ! | ATGTTTCAAGTGGATGAAAG+AGG | - | chr4_4:42895737-42895756 | Msa0681960:intron | 35.0% |
| ! | TGTTTCAAGTGGATGAAAGA+GGG | - | chr4_4:42895738-42895757 | Msa0681960:intron | 35.0% |
| !! | AATTTGGCAACTGTTTCTGA+TGG | - | chr4_4:42895857-42895876 | Msa0681960:CDS | 35.0% |
| ! | GTTTTGTAGAGACGAAAAAG+TGG | + | chr4_4:42895994-42896013 | None:intergenic | 35.0% |
| AATTCGTAGGGACTAAAAAG+TGG | - | chr4_4:42896054-42896073 | Msa0681960:CDS | 35.0% | |
| TGAAAATAGGTGAAAGACTC+TGG | - | chr4_4:42896183-42896202 | Msa0681960:CDS | 35.0% | |
| !! | AAATTTGGCAGGTTGATTTC+TGG | + | chr4_4:42896210-42896229 | None:intergenic | 35.0% |
| ! | ACCTGCCAAATTTAAAGCTA+TGG | - | chr4_4:42896217-42896236 | Msa0681960:CDS | 35.0% |
| ! | CCTGCCAAATTTAAAGCTAT+GGG | - | chr4_4:42896218-42896237 | Msa0681960:CDS | 35.0% |
| AAGGTATGAATTCAAAGCCT+TGG | + | chr4_4:42896263-42896282 | None:intergenic | 35.0% | |
| ! | TTAATGTTTGCTAGTGTCTC+TGG | + | chr4_4:42894586-42894605 | None:intergenic | 35.0% |
| ATGGGTTTGAAGGAAATGAA+AGG | + | chr4_4:42894756-42894775 | None:intergenic | 35.0% | |
| ! | TTGTGATCAAATGGGTTTGA+AGG | + | chr4_4:42894766-42894785 | None:intergenic | 35.0% |
| TTTGATCCTACTTCTTCACT+TGG | - | chr4_4:42894808-42894827 | Msa0681960:intron | 35.0% | |
| AAAGAACCAAGTGAAGAAGT+AGG | + | chr4_4:42894817-42894836 | None:intergenic | 35.0% | |
| !!! | GGTTCTTTCTCTTGTTTTGA+TGG | - | chr4_4:42894829-42894848 | Msa0681960:intron | 35.0% |
| !!! | TTGTTTTGATGGAGAAGCTA+AGG | - | chr4_4:42894840-42894859 | Msa0681960:intron | 35.0% |
| !!! | TGTTTTGATGGAGAAGCTAA+GGG | - | chr4_4:42894841-42894860 | Msa0681960:intron | 35.0% |
| ATTACCACAACAACTACAAG+TGG | - | chr4_4:42894928-42894947 | Msa0681960:intron | 35.0% | |
| CGTAAAGCTTATCCTTCATT+CGG | + | chr4_4:42895020-42895039 | None:intergenic | 35.0% | |
| TTAAATAGCGATCATCAACG+TGG | + | chr4_4:42895164-42895183 | None:intergenic | 35.0% | |
| TTGGATAAGGCTTCAATCAT+TGG | - | chr4_4:42895424-42895443 | Msa0681960:CDS | 35.0% | |
| ! | ATGTTTCAAGTGGATGAAAG+AGG | - | chr4_4:42895737-42895756 | Msa0681960:intron | 35.0% |
| ! | TGTTTCAAGTGGATGAAAGA+GGG | - | chr4_4:42895738-42895757 | Msa0681960:intron | 35.0% |
| !! | AATTTGGCAACTGTTTCTGA+TGG | - | chr4_4:42895857-42895876 | Msa0681960:CDS | 35.0% |
| ! | GTTTTGTAGAGACGAAAAAG+TGG | + | chr4_4:42895994-42896013 | None:intergenic | 35.0% |
| AATTCGTAGGGACTAAAAAG+TGG | - | chr4_4:42896054-42896073 | Msa0681960:CDS | 35.0% | |
| TGAAAATAGGTGAAAGACTC+TGG | - | chr4_4:42896183-42896202 | Msa0681960:CDS | 35.0% | |
| !! | AAATTTGGCAGGTTGATTTC+TGG | + | chr4_4:42896210-42896229 | None:intergenic | 35.0% |
| ! | ACCTGCCAAATTTAAAGCTA+TGG | - | chr4_4:42896217-42896236 | Msa0681960:CDS | 35.0% |
| ! | CCTGCCAAATTTAAAGCTAT+GGG | - | chr4_4:42896218-42896237 | Msa0681960:CDS | 35.0% |
| AAGGTATGAATTCAAAGCCT+TGG | + | chr4_4:42896263-42896282 | None:intergenic | 35.0% | |
| !! | GTTTTGATGGAGAAGCTAAG+GGG | - | chr4_4:42894842-42894861 | Msa0681960:intron | 40.0% |
| ! | TTTTGATGGAGAAGCTAAGG+GGG | - | chr4_4:42894843-42894862 | Msa0681960:intron | 40.0% |
| !! | CTTGTTGTTGTTGTTGTTGC+AGG | + | chr4_4:42894907-42894926 | None:intergenic | 40.0% |
| ATCACCACTTGTAGTTGTTG+TGG | + | chr4_4:42894935-42894954 | None:intergenic | 40.0% | |
| ATCACAAGCCAAGAAGCTTA+AGG | - | chr4_4:42895477-42895496 | Msa0681960:intron | 40.0% | |
| ! | GACTTGAAGCATCATTAGCA+GGG | - | chr4_4:42895512-42895531 | Msa0681960:intron | 40.0% |
| ATGCAATAAAGGAGAAAGGG+TGG | - | chr4_4:42895778-42895797 | Msa0681960:intron | 40.0% | |
| !! | CCCATAGCTTTAAATTTGGC+AGG | + | chr4_4:42896221-42896240 | None:intergenic | 40.0% |
| !! | GTTTTGATGGAGAAGCTAAG+GGG | - | chr4_4:42894842-42894861 | Msa0681960:intron | 40.0% |
| ! | TTTTGATGGAGAAGCTAAGG+GGG | - | chr4_4:42894843-42894862 | Msa0681960:intron | 40.0% |
| !! | CTTGTTGTTGTTGTTGTTGC+AGG | + | chr4_4:42894907-42894926 | None:intergenic | 40.0% |
| ATCACCACTTGTAGTTGTTG+TGG | + | chr4_4:42894935-42894954 | None:intergenic | 40.0% | |
| ATCACAAGCCAAGAAGCTTA+AGG | - | chr4_4:42895477-42895496 | Msa0681960:intron | 40.0% | |
| ! | GACTTGAAGCATCATTAGCA+GGG | - | chr4_4:42895512-42895531 | Msa0681960:intron | 40.0% |
| ATGCAATAAAGGAGAAAGGG+TGG | - | chr4_4:42895778-42895797 | Msa0681960:intron | 40.0% | |
| !! | CCCATAGCTTTAAATTTGGC+AGG | + | chr4_4:42896221-42896240 | None:intergenic | 40.0% |
| ! | CATCAATTTGATTCGTGGGG+AGG | - | chr4_4:42894657-42894676 | Msa0681960:intron | 45.0% |
| ! | TGTTGTTGTTGTTGCAGGAG+TGG | + | chr4_4:42894902-42894921 | None:intergenic | 45.0% |
| CCTCTCAGAAACCAAAGTCT+TGG | + | chr4_4:42894986-42895005 | None:intergenic | 45.0% | |
| ! | CCAAGACTTTGGTTTCTGAG+AGG | - | chr4_4:42894983-42895002 | Msa0681960:CDS | 45.0% |
| ! | AGACTTTGGTTTCTGAGAGG+AGG | - | chr4_4:42894986-42895005 | Msa0681960:CDS | 45.0% |
| GCTTTACGCATTGCGTTCAT+TGG | - | chr4_4:42895032-42895051 | Msa0681960:CDS | 45.0% | |
| AACCTCAGCCTTAAGCTTCT+TGG | + | chr4_4:42895488-42895507 | None:intergenic | 45.0% | |
| ! | GGACTTGAAGCATCATTAGC+AGG | - | chr4_4:42895511-42895530 | Msa0681960:intron | 45.0% |
| ! | CATCAATTTGATTCGTGGGG+AGG | - | chr4_4:42894657-42894676 | Msa0681960:intron | 45.0% |
| ! | TGTTGTTGTTGTTGCAGGAG+TGG | + | chr4_4:42894902-42894921 | None:intergenic | 45.0% |
| CCTCTCAGAAACCAAAGTCT+TGG | + | chr4_4:42894986-42895005 | None:intergenic | 45.0% | |
| ! | CCAAGACTTTGGTTTCTGAG+AGG | - | chr4_4:42894983-42895002 | Msa0681960:CDS | 45.0% |
| ! | AGACTTTGGTTTCTGAGAGG+AGG | - | chr4_4:42894986-42895005 | Msa0681960:CDS | 45.0% |
| GCTTTACGCATTGCGTTCAT+TGG | - | chr4_4:42895032-42895051 | Msa0681960:CDS | 45.0% | |
| AACCTCAGCCTTAAGCTTCT+TGG | + | chr4_4:42895488-42895507 | None:intergenic | 45.0% | |
| ! | GGACTTGAAGCATCATTAGC+AGG | - | chr4_4:42895511-42895530 | Msa0681960:intron | 45.0% |
| ! | CTTTGGTTTCTGAGAGGAGG+AGG | - | chr4_4:42894989-42895008 | Msa0681960:CDS | 50.0% |
| AGCCAAGAAGCTTAAGGCTG+AGG | - | chr4_4:42895483-42895502 | Msa0681960:intron | 50.0% | |
| AAGCTTAAGGCTGAGGTTGC+AGG | - | chr4_4:42895490-42895509 | Msa0681960:intron | 50.0% | |
| GCAGGGTCCAAAACTCATCA+AGG | - | chr4_4:42895529-42895548 | Msa0681960:intron | 50.0% | |
| ! | CTTTGGTTTCTGAGAGGAGG+AGG | - | chr4_4:42894989-42895008 | Msa0681960:CDS | 50.0% |
| AGCCAAGAAGCTTAAGGCTG+AGG | - | chr4_4:42895483-42895502 | Msa0681960:intron | 50.0% | |
| AAGCTTAAGGCTGAGGTTGC+AGG | - | chr4_4:42895490-42895509 | Msa0681960:intron | 50.0% | |
| GCAGGGTCCAAAACTCATCA+AGG | - | chr4_4:42895529-42895548 | Msa0681960:intron | 50.0% | |
| GAGGAGGCGAAGCCGAATGA+AGG | - | chr4_4:42895005-42895024 | Msa0681960:CDS | 60.0% | |
| GAGGAGGCGAAGCCGAATGA+AGG | - | chr4_4:42895005-42895024 | Msa0681960:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 42894571 | 42896296 | 42894571 | ID=Msa0681960;Name=Msa0681960 |
| chr4_4 | mRNA | 42894571 | 42896296 | 42894571 | ID=Msa0681960-mRNA-1;Parent=Msa0681960;Name=Msa0681960-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|0|0|1|1|1|4|0|325 |
| chr4_4 | exon | 42895796 | 42896296 | 42895796 | ID=Msa0681960-mRNA-1:exon:10356;Parent=Msa0681960-mRNA-1 |
| chr4_4 | exon | 42895246 | 42895443 | 42895246 | ID=Msa0681960-mRNA-1:exon:10355;Parent=Msa0681960-mRNA-1 |
| chr4_4 | exon | 42894963 | 42895136 | 42894963 | ID=Msa0681960-mRNA-1:exon:10354;Parent=Msa0681960-mRNA-1 |
| chr4_4 | exon | 42894571 | 42894675 | 42894571 | ID=Msa0681960-mRNA-1:exon:10353;Parent=Msa0681960-mRNA-1 |
| chr4_4 | CDS | 42895796 | 42896296 | 42895796 | ID=Msa0681960-mRNA-1:cds;Parent=Msa0681960-mRNA-1 |
| chr4_4 | CDS | 42895246 | 42895443 | 42895246 | ID=Msa0681960-mRNA-1:cds;Parent=Msa0681960-mRNA-1 |
| chr4_4 | CDS | 42894963 | 42895136 | 42894963 | ID=Msa0681960-mRNA-1:cds;Parent=Msa0681960-mRNA-1 |
| chr4_4 | CDS | 42894571 | 42894675 | 42894571 | ID=Msa0681960-mRNA-1:cds;Parent=Msa0681960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
