Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0687110 | XP_013456483.1 | 99.592 | 490 | 2 | 0 | 1 | 490 | 1 | 490 | 0.0 | 1008 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0687110 | sp|Q8L883|LAX5_MEDTR | 99.592 | 490 | 2 | 0 | 1 | 490 | 1 | 490 | 0.0 | 1008 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0687110 | A0A072UL82 | 99.592 | 490 | 2 | 0 | 1 | 490 | 1 | 490 | 0.0 | 1008 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0687110 | Msa1315130 | 0.810991 | 8.750091e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0687110 | MtrunA17_Chr4g0037361 | 99.592 | 490 | 2 | 0 | 1 | 490 | 1 | 490 | 0.0 | 1008 |
| Msa0687110 | MtrunA17_Chr4g0006031 | 78.158 | 467 | 96 | 2 | 3 | 463 | 1 | 467 | 0.0 | 770 |
| Msa0687110 | MtrunA17_Chr7g0241841 | 77.516 | 467 | 99 | 1 | 3 | 463 | 1 | 467 | 0.0 | 764 |
| Msa0687110 | MtrunA17_Chr3g0114951 | 80.778 | 463 | 76 | 2 | 3 | 465 | 1 | 450 | 0.0 | 761 |
| Msa0687110 | MtrunA17_Chr5g0436811 | 80.137 | 438 | 87 | 0 | 32 | 469 | 35 | 472 | 0.0 | 751 |
| Msa0687110 | MtrunA17_Chr1g0198081 | 23.355 | 471 | 308 | 13 | 15 | 459 | 37 | 480 | 2.35e-16 | 81.6 |
| Msa0687110 | MtrunA17_Chr4g0027241 | 24.500 | 400 | 265 | 14 | 28 | 400 | 29 | 418 | 4.52e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0687110 | AT2G21050.1 | 89.956 | 458 | 45 | 1 | 6 | 463 | 5 | 461 | 0.0 | 868 |
| Msa0687110 | AT1G77690.1 | 81.741 | 471 | 80 | 2 | 3 | 468 | 1 | 470 | 0.0 | 776 |
| Msa0687110 | AT2G38120.1 | 78.834 | 463 | 96 | 2 | 3 | 465 | 9 | 469 | 0.0 | 768 |
| Msa0687110 | AT5G01240.1 | 77.004 | 474 | 95 | 3 | 3 | 463 | 1 | 473 | 0.0 | 763 |
| Msa0687110 | AT5G01240.2 | 81.679 | 393 | 71 | 1 | 72 | 463 | 1 | 393 | 0.0 | 684 |
| Msa0687110 | AT2G38120.2 | 80.149 | 403 | 78 | 2 | 3 | 405 | 9 | 409 | 0.0 | 675 |
Find 156 sgRNAs with CRISPR-Local
Find 305 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCAGCTGGGAATGCTTTC+TGG | 0.079548 | 4_4:+51874775 | Msa0687110:CDS |
| TCTTTCTATTTATAGCTTTA+AGG | 0.112491 | 4_4:+51878482 | Msa0687110:three_prime_UTR |
| CATCGGCTACAGCAGTTTAT+TGG | 0.184376 | 4_4:+51877045 | Msa0687110:CDS |
| GCTATTATATTCCCTTTCTT+TGG | 0.196497 | 4_4:+51877408 | Msa0687110:CDS |
| GTTCAAGGCCATATATTTAA+TGG | 0.240066 | 4_4:+51876992 | Msa0687110:CDS |
| CTAATTGTGGGCTTTGGATT+TGG | 0.240306 | 4_4:+51878102 | Msa0687110:CDS |
| GGTTATTCCAATTTGGTTCT+TGG | 0.243473 | 4_4:+51877386 | Msa0687110:CDS |
| CCAAGTTATCAAACTTCTTA+TGG | 0.248960 | 4_4:+51874537 | Msa0687110:CDS |
| ATGTCACGGAAGGGTGATTT+TGG | 0.254534 | 4_4:-51877116 | None:intergenic |
| GGTTTCACTCTATCTTTATA+TGG | 0.257792 | 4_4:-51874338 | None:intergenic |
| TGCCAGTGGTTATTCCAATT+TGG | 0.262524 | 4_4:+51877379 | Msa0687110:CDS |
| TTTCAGAAGCCATGTTATTC+AGG | 0.267443 | 4_4:+51874903 | Msa0687110:CDS |
| TGGGTCCTAATTGTGGGCTT+TGG | 0.307809 | 4_4:+51878096 | Msa0687110:CDS |
| GAATTGCAGTTTATAACATT+TGG | 0.320311 | 4_4:+51877267 | Msa0687110:intron |
| ATTTGGTGGGTGGGCCAGTA+TGG | 0.324045 | 4_4:+51878119 | Msa0687110:CDS |
| CCATAAGAAGTTTGATAACT+TGG | 0.326039 | 4_4:-51874537 | None:intergenic |
| ATCGGCTACAGCAGTTTATT+GGG | 0.330718 | 4_4:+51877046 | Msa0687110:CDS |
| TAGGGTAGCCATTAAATATA+TGG | 0.336979 | 4_4:-51877000 | None:intergenic |
| ATAATAGCCAAGAACCAAAT+TGG | 0.338476 | 4_4:-51877393 | None:intergenic |
| TTGCTTTCCACTCTCTAATA+AGG | 0.342436 | 4_4:-51874382 | None:intergenic |
| GGTCATAACAAGACCCAAAA+AGG | 0.348177 | 4_4:-51875581 | None:intergenic |
| ACAGCAGTTTATTGGGCATT+TGG | 0.349797 | 4_4:+51877053 | Msa0687110:CDS |
| CAAACATTCTCTACACATTC+GGG | 0.350387 | 4_4:+51875844 | Msa0687110:CDS |
| CATTTCACAACTATAGAATA+TGG | 0.355943 | 4_4:+51875557 | Msa0687110:CDS |
| TTCTCCCACACAAAGTATAA+TGG | 0.356078 | 4_4:-51877303 | None:intergenic |
| TCGAGCAGAGGATGATTTAA+AGG | 0.360379 | 4_4:-51877508 | None:intergenic |
| GGCTTCGATGAATCGATTAA+TGG | 0.362173 | 4_4:+51878315 | Msa0687110:three_prime_UTR |
| CAAATCCAAAGCCCACAATT+AGG | 0.364127 | 4_4:-51878101 | None:intergenic |
| CAGTGGTTTGAGGTTCTTGA+TGG | 0.365848 | 4_4:+51875104 | Msa0687110:intron |
| CAACTCTTCTATGGTATACT+TGG | 0.385796 | 4_4:+51874808 | Msa0687110:CDS |
| CACTGGAGAAACGTGGGCTT+GGG | 0.398985 | 4_4:+51875140 | Msa0687110:CDS |
| CGTGATCAACGTATTTATAG+TGG | 0.399635 | 4_4:+51878071 | Msa0687110:CDS |
| TGAAGAAGGATTAATACATA+TGG | 0.400673 | 4_4:-51878456 | None:intergenic |
| ACAAACATTCTCTACACATT+CGG | 0.401564 | 4_4:+51875843 | Msa0687110:CDS |
| TTGTCAGTGTCAGCACATAT+AGG | 0.402063 | 4_4:-51877019 | None:intergenic |
| GTGGTTCTGCTTATGATGCT+TGG | 0.409331 | 4_4:+51874564 | Msa0687110:CDS |
| CCCAGCTGGGAAAATGAGTA+TGG | 0.409707 | 4_4:-51874763 | None:intergenic |
| CTCCCAAGTTTGTTGGAAGA+TGG | 0.410587 | 4_4:+51878037 | Msa0687110:CDS |
| TACCCATCTTCCAACAAACT+TGG | 0.411247 | 4_4:-51878040 | None:intergenic |
| AGATCCAACGGTGGAATTGA+TGG | 0.413693 | 4_4:-51877433 | None:intergenic |
| GTACACCAGATTGACACATT+TGG | 0.423539 | 4_4:+51878150 | Msa0687110:CDS |
| AGTTGGGAACTATGTAGAAA+TGG | 0.427037 | 4_4:+51874481 | Msa0687110:CDS |
| TGGGCTTTGGATTTGGTGGG+TGG | 0.428015 | 4_4:+51878109 | Msa0687110:CDS |
| ATCCTGCATTTGTTATGTAT+TGG | 0.432011 | 4_4:+51878408 | Msa0687110:three_prime_UTR |
| GAGGTTCTTGATGGACTCCT+AGG | 0.432953 | 4_4:+51875113 | Msa0687110:CDS |
| GTTGCTGAAACGGTAATAGT+TGG | 0.438938 | 4_4:+51874464 | Msa0687110:CDS |
| TGCAGCTGTTCTTCACGGTC+AGG | 0.440570 | 4_4:+51875630 | Msa0687110:CDS |
| ACAATTGCAGCTGTTCTTCA+CGG | 0.442390 | 4_4:+51875625 | Msa0687110:CDS |
| AAGGAAGAGAGGCTTGAGAT+TGG | 0.442497 | 4_4:-51874244 | None:intergenic |
| GTGGAAGGAGTGAAGCATTC+GGG | 0.443204 | 4_4:+51875786 | Msa0687110:CDS |
| TGTCAGTGTCAGCACATATA+GGG | 0.444170 | 4_4:-51877018 | None:intergenic |
| GTGAAGATGTGAGCAAGGGC+TGG | 0.448315 | 4_4:-51877486 | None:intergenic |
| AAATGATAAAGTTGCTGAAA+CGG | 0.455587 | 4_4:+51874454 | Msa0687110:CDS |
| ATTGTGGGCTTTGGATTTGG+TGG | 0.456631 | 4_4:+51878105 | Msa0687110:CDS |
| ACACTGGAGAAACGTGGGCT+TGG | 0.457439 | 4_4:+51875139 | Msa0687110:CDS |
| TTTCTAGTAGAGAATGGAAA+TGG | 0.457978 | 4_4:+51874430 | Msa0687110:exon |
| GGGCTTTGGATTTGGTGGGT+GGG | 0.460929 | 4_4:+51878110 | Msa0687110:CDS |
| TAATTATATGCAGTGGTTTG+AGG | 0.462228 | 4_4:+51875094 | Msa0687110:intron |
| TTGTGGGCTTTGGATTTGGT+GGG | 0.463188 | 4_4:+51878106 | Msa0687110:CDS |
| TAAATCATCCTCTGCTCGAC+AGG | 0.465339 | 4_4:+51877512 | Msa0687110:CDS |
| TTATGACCACTTACACTGCT+TGG | 0.469304 | 4_4:+51875596 | Msa0687110:CDS |
| ATTCTATAGTTGTGAAATGA+AGG | 0.472883 | 4_4:-51875553 | None:intergenic |
| TGCCAGAAAGCATTCCCAGC+TGG | 0.473037 | 4_4:-51874777 | None:intergenic |
| GTGTACAAAATTCACCATAC+TGG | 0.475447 | 4_4:-51878133 | None:intergenic |
| GAACAACCTCCCAAGTTTGT+TGG | 0.478358 | 4_4:+51878030 | Msa0687110:CDS |
| AGCTGGTGAGGTGGCATGGT+TGG | 0.482884 | 4_4:-51878219 | None:intergenic |
| CGTTTCTCCAGTGTTTCCCT+AGG | 0.484151 | 4_4:-51875130 | None:intergenic |
| CATGTGTTCTACTTGTTATG+TGG | 0.484152 | 4_4:+51878349 | Msa0687110:three_prime_UTR |
| ACCTTGCACAAGCTATAAGT+TGG | 0.485131 | 4_4:-51875199 | None:intergenic |
| TCCCAAGTTTGTTGGAAGAT+GGG | 0.489723 | 4_4:+51878038 | Msa0687110:CDS |
| TCTATGGTATACTTGGTAGC+TGG | 0.491449 | 4_4:+51874815 | Msa0687110:CDS |
| GGACCCATCAATTCCACCGT+TGG | 0.491878 | 4_4:+51877429 | Msa0687110:CDS |
| TATATATTTCTAGTAGAGAA+TGG | 0.492267 | 4_4:+51874424 | Msa0687110:exon |
| TTGCTGAAACGGTAATAGTT+GGG | 0.497503 | 4_4:+51874465 | Msa0687110:CDS |
| GGTGGAAGGAGTGAAGCATT+CGG | 0.499283 | 4_4:+51875785 | Msa0687110:intron |
| AGTGGTGTGGGTCCTAATTG+TGG | 0.500342 | 4_4:+51878089 | Msa0687110:CDS |
| CAACATAGAGTATGCTAATG+AGG | 0.506143 | 4_4:-51874846 | None:intergenic |
| GTTTAGCTGTGCTTCCAACC+AGG | 0.508117 | 4_4:+51874586 | Msa0687110:CDS |
| TGGTGGTGGTGATGCGGTGA+AGG | 0.508127 | 4_4:-51878255 | None:intergenic |
| GAATTGATGGGTCCAAAGAA+AGG | 0.509696 | 4_4:-51877420 | None:intergenic |
| AAGGCGCGGTTGCATTCAGC+TGG | 0.510713 | 4_4:-51878236 | None:intergenic |
| AAGTTTATGCAAACGTGCAT+TGG | 0.511403 | 4_4:+51877350 | Msa0687110:CDS |
| AACCAATACATAACAAATGC+AGG | 0.512298 | 4_4:-51878410 | None:intergenic |
| GCCAGAAAGCATTCCCAGCT+GGG | 0.513864 | 4_4:-51874776 | None:intergenic |
| GTGGAAGCCACAAAAGTTCA+AGG | 0.514058 | 4_4:+51876977 | Msa0687110:CDS |
| GCACACCATTATACTTTGTG+TGG | 0.519101 | 4_4:+51877298 | Msa0687110:CDS |
| AACTTGGACTTTATGTCCTG+TGG | 0.525467 | 4_4:-51874521 | None:intergenic |
| ATTCAGCTGGTGAGGTGGCA+TGG | 0.528958 | 4_4:-51878223 | None:intergenic |
| ATAATCTTGACAAGAGGACT+TGG | 0.530895 | 4_4:+51875488 | Msa0687110:CDS |
| AGAGTCCAAATGTGTCAATC+TGG | 0.531557 | 4_4:-51878155 | None:intergenic |
| TGGAAGAAGAGCAAAAGCAT+TGG | 0.532720 | 4_4:-51877096 | None:intergenic |
| TCTTAACTCTTGTTTCCTTG+TGG | 0.533242 | 4_4:-51874359 | None:intergenic |
| GTTAAGACCTTATTAGAGAG+TGG | 0.537057 | 4_4:+51874375 | Msa0687110:five_prime_UTR |
| TTGGACTTTATGTCCTGTGG+TGG | 0.540219 | 4_4:-51874518 | None:intergenic |
| TTATCAAACTTCTTATGGCA+TGG | 0.541090 | 4_4:+51874542 | Msa0687110:CDS |
| GTGGTGTGGGTCCTAATTGT+GGG | 0.542707 | 4_4:+51878090 | Msa0687110:CDS |
| ACTCAATATATCAGTGGTGG+TGG | 0.547534 | 4_4:-51878269 | None:intergenic |
| AAGGGCTGGGATGATGTAAA+CGG | 0.549825 | 4_4:-51877472 | None:intergenic |
| AAGATACCAAGCAGTGTAAG+TGG | 0.551218 | 4_4:-51875602 | None:intergenic |
| AGGTTCTTGATGGACTCCTA+GGG | 0.551440 | 4_4:+51875114 | Msa0687110:CDS |
| AAGTTTGTTGGAAGATGGGT+AGG | 0.551616 | 4_4:+51878042 | Msa0687110:CDS |
| CAATAAACTGCTGTAGCCGA+TGG | 0.552857 | 4_4:-51877044 | None:intergenic |
| AAATAGAAAGAAATTGAAGA+AGG | 0.554499 | 4_4:-51878470 | None:intergenic |
| CAACGTATTTATAGTGGTGT+GGG | 0.556269 | 4_4:+51878077 | Msa0687110:CDS |
| ACCCATCTTCCAACAAACTT+GGG | 0.556973 | 4_4:-51878039 | None:intergenic |
| TGAAGATGTGAGCAAGGGCT+GGG | 0.560605 | 4_4:-51877485 | None:intergenic |
| GATCCAACGGTGGAATTGAT+GGG | 0.560821 | 4_4:-51877432 | None:intergenic |
| AATAACAGCCATGTCACGGA+AGG | 0.562241 | 4_4:-51877126 | None:intergenic |
| GTTGGAACAGAAGGTGTTGG+TGG | 0.562882 | 4_4:-51878201 | None:intergenic |
| GGAACAGAAGGTGTTGGTGG+AGG | 0.565236 | 4_4:-51878198 | None:intergenic |
| AAAATCACCCTTCCGTGACA+TGG | 0.573703 | 4_4:+51877118 | Msa0687110:CDS |
| GAATGTGTAGAGAATGTTTG+TGG | 0.575502 | 4_4:-51875841 | None:intergenic |
| ATGGACTCCTAGGGAAACAC+TGG | 0.577201 | 4_4:+51875123 | Msa0687110:CDS |
| TCAACGTATTTATAGTGGTG+TGG | 0.578406 | 4_4:+51878076 | Msa0687110:CDS |
| TTTGTGTGGGAGAAAACAGT+AGG | 0.580837 | 4_4:+51877312 | Msa0687110:CDS |
| AATTGATGGGTCCAAAGAAA+GGG | 0.585820 | 4_4:-51877419 | None:intergenic |
| TTAAAATAACAGCCATGTCA+CGG | 0.586272 | 4_4:-51877130 | None:intergenic |
| GTTGCATTCAGCTGGTGAGG+TGG | 0.587950 | 4_4:-51878228 | None:intergenic |
| GGTGGCATGGTTGGAACAGA+AGG | 0.588974 | 4_4:-51878210 | None:intergenic |
| TAAAGGTGAAGATGTGAGCA+AGG | 0.591344 | 4_4:-51877491 | None:intergenic |
| TGATGAGAAACTAACCTGGT+TGG | 0.592816 | 4_4:-51874600 | None:intergenic |
| TATGTAGAAATGGAAAGTGA+AGG | 0.594281 | 4_4:+51874491 | Msa0687110:CDS |
| TGTATTGCACGATCTTGATG+AGG | 0.595414 | 4_4:+51878294 | Msa0687110:three_prime_UTR |
| AACCAAATTGGAATAACCAC+TGG | 0.595756 | 4_4:-51877381 | None:intergenic |
| TAAATGATAATCTTGACAAG+AGG | 0.596044 | 4_4:+51875482 | Msa0687110:CDS |
| GGGAAATAATGCATGCGATG+TGG | 0.596207 | 4_4:+51876958 | Msa0687110:intron |
| TCCAACTTATAGCTTGTGCA+AGG | 0.600608 | 4_4:+51875198 | Msa0687110:CDS |
| GTGGTGATGCGGTGAAGGCG+CGG | 0.601503 | 4_4:-51878250 | None:intergenic |
| ATGGTTGGAACAGAAGGTGT+TGG | 0.602151 | 4_4:-51878204 | None:intergenic |
| GATATTGTCTTACACAGTAA+CGG | 0.603545 | 4_4:-51875874 | None:intergenic |
| GCGGTTGCATTCAGCTGGTG+AGG | 0.603989 | 4_4:-51878231 | None:intergenic |
| CATCTTCCAACAAACTTGGG+AGG | 0.605458 | 4_4:-51878036 | None:intergenic |
| CACACCATTATACTTTGTGT+GGG | 0.607429 | 4_4:+51877299 | Msa0687110:CDS |
| TGTTGTGGTGTATAGGTGGA+AGG | 0.609859 | 4_4:+51875771 | Msa0687110:intron |
| AAGTGAAGGAAAACCACCAC+AGG | 0.618329 | 4_4:+51874505 | Msa0687110:CDS |
| AACATTCTCTACACATTCGG+GGG | 0.631658 | 4_4:+51875846 | Msa0687110:CDS |
| TACAATACTCAATATATCAG+TGG | 0.635352 | 4_4:-51878275 | None:intergenic |
| TCAAACTTCTTATGGCATGG+TGG | 0.636835 | 4_4:+51874545 | Msa0687110:CDS |
| ATATTATACCTGTCGAGCAG+AGG | 0.646001 | 4_4:-51877520 | None:intergenic |
| GCTGACACTGACAATTCCAT+CGG | 0.648246 | 4_4:+51877028 | Msa0687110:CDS |
| ATAACAGCCATGTCACGGAA+GGG | 0.649738 | 4_4:-51877125 | None:intergenic |
| AAGGTGTTGGTGGAGGACAT+TGG | 0.653915 | 4_4:-51878191 | None:intergenic |
| AAAGGTGAAGATGTGAGCAA+GGG | 0.654013 | 4_4:-51877490 | None:intergenic |
| GTGTGTGATGCAGAATGCTG+TGG | 0.654471 | 4_4:+51878008 | Msa0687110:intron |
| AGGGAAACACTGGAGAAACG+TGG | 0.658358 | 4_4:+51875133 | Msa0687110:CDS |
| AATACTCAATATATCAGTGG+TGG | 0.659414 | 4_4:-51878272 | None:intergenic |
| TTGTGTGGGAGAAAACAGTA+GGG | 0.665602 | 4_4:+51877313 | Msa0687110:CDS |
| AAACATTCTCTACACATTCG+GGG | 0.672769 | 4_4:+51875845 | Msa0687110:CDS |
| ACTGACAAGGAGAGATCCAA+CGG | 0.673567 | 4_4:-51877445 | None:intergenic |
| TGTAAACGGTGAAACTGACA+AGG | 0.685282 | 4_4:-51877458 | None:intergenic |
| GGGAAACACTGGAGAAACGT+GGG | 0.686097 | 4_4:+51875134 | Msa0687110:CDS |
| TGCATTGGTGAGATTGCCAG+TGG | 0.691338 | 4_4:+51877365 | Msa0687110:CDS |
| AAAGATAGAGTGAAACCACA+AGG | 0.695407 | 4_4:+51874344 | Msa0687110:five_prime_UTR |
| TATCAGTGGTGGTGGTGATG+CGG | 0.696565 | 4_4:-51878261 | None:intergenic |
| TAAGTATTACCTGAATAACA+TGG | 0.718760 | 4_4:-51874912 | None:intergenic |
| GACAAGGAGAGATCCAACGG+TGG | 0.757962 | 4_4:-51877442 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATAATTCTATATTTTAC+AGG | + | chr4_4:51875816-51875835 | Msa0687110:CDS | 10.0% |
| !!! | AAATAATTCTATATTTTACA+GGG | + | chr4_4:51875817-51875836 | Msa0687110:CDS | 10.0% |
| !!! | ATTAATTTATTTTCTTCATT+TGG | - | chr4_4:51876905-51876924 | None:intergenic | 10.0% |
| !! | CACATAACAATTAAATTTAA+TGG | - | chr4_4:51874953-51874972 | None:intergenic | 15.0% |
| !! | GATTCTGATAATTATTTATT+AGG | - | chr4_4:51875678-51875697 | None:intergenic | 15.0% |
| !!! | AATAATTCTATATTTTACAG+GGG | + | chr4_4:51875818-51875837 | Msa0687110:CDS | 15.0% |
| !!! | TTTTGGATATTATATACATA+AGG | - | chr4_4:51876243-51876262 | None:intergenic | 15.0% |
| !! | AATATCCAAAACTTAAAAAT+AGG | + | chr4_4:51876252-51876271 | Msa0687110:intron | 15.0% |
| !!! | AAAATAGAATGTCAATATTT+TGG | - | chr4_4:51876527-51876546 | None:intergenic | 15.0% |
| !! | AAATTGATTAACATGTTAAT+TGG | + | chr4_4:51877237-51877256 | Msa0687110:intron | 15.0% |
| !! | ACTTTACTTAGAATAATAAA+TGG | - | chr4_4:51877753-51877772 | None:intergenic | 15.0% |
| !!! | TTTTTATTATTGAATTGAAC+TGG | + | chr4_4:51877982-51878001 | Msa0687110:intron | 15.0% |
| !! | AAAAACAAAAAAAATGTTCA+TGG | + | chr4_4:51878552-51878571 | Msa0687110:three_prime_UTR | 15.0% |
| !!! | ATAAGTAACTTGTTTTTGTA+AGG | - | chr4_4:51874266-51874285 | None:intergenic | 20.0% |
| !!! | TATATATTTCTAGTAGAGAA+TGG | + | chr4_4:51874424-51874443 | Msa0687110:exon | 20.0% |
| !!! | TATATGGTTTTTCATTTATG+AGG | + | chr4_4:51874673-51874692 | Msa0687110:intron | 20.0% |
| !! | ACAATTAAATTTAATGGAGT+TGG | - | chr4_4:51874947-51874966 | None:intergenic | 20.0% |
| !! | ATTTAATTGTTATGTGTGTT+CGG | + | chr4_4:51874957-51874976 | Msa0687110:intron | 20.0% |
| !! | TTATGATTAATTATATGCAG+TGG | + | chr4_4:51875087-51875106 | Msa0687110:intron | 20.0% |
| !! | ATTTATGTAATATATGTTGC+TGG | - | chr4_4:51875467-51875486 | None:intergenic | 20.0% |
| !! | TAAATAAATTCAGTACTAGT+TGG | + | chr4_4:51875998-51876017 | Msa0687110:intron | 20.0% |
| !!! | AGTAACCTATTTTTAAGTTT+TGG | - | chr4_4:51876260-51876279 | None:intergenic | 20.0% |
| !!! | ATGATGAAAATACCATTTTT+GGG | - | chr4_4:51876568-51876587 | None:intergenic | 20.0% |
| !!! | ATTGTCTTTTTTGGATTTTA+AGG | + | chr4_4:51876849-51876868 | Msa0687110:intron | 20.0% |
| !! | TAATAATGCAGAAATTAATG+TGG | - | chr4_4:51877910-51877929 | None:intergenic | 20.0% |
| !! | AAATAGAAAGAAATTGAAGA+AGG | - | chr4_4:51878473-51878492 | None:intergenic | 20.0% |
| !!! | TCTTTCTATTTATAGCTTTA+AGG | + | chr4_4:51878482-51878501 | Msa0687110:three_prime_UTR | 20.0% |
| ! | AAATGATAAAGTTGCTGAAA+CGG | + | chr4_4:51874454-51874473 | Msa0687110:CDS | 25.0% |
| !!! | ATACTTTTTCAACTCTTCTA+TGG | + | chr4_4:51874799-51874818 | Msa0687110:CDS | 25.0% |
| ! | TAAGTATTACCTGAATAACA+TGG | - | chr4_4:51874915-51874934 | None:intergenic | 25.0% |
| !! | AAATTTAATGGAGTTGGTTA+GGG | - | chr4_4:51874941-51874960 | None:intergenic | 25.0% |
| !! | TAAATTTAATGGAGTTGGTT+AGG | - | chr4_4:51874942-51874961 | None:intergenic | 25.0% |
| ! | AAGATGATAAAGTCTATGTT+TGG | - | chr4_4:51875046-51875065 | None:intergenic | 25.0% |
| ! | TAGACTTTATCATCTTATAG+AGG | + | chr4_4:51875050-51875069 | Msa0687110:intron | 25.0% |
| ! | AGACTTTATCATCTTATAGA+GGG | + | chr4_4:51875051-51875070 | Msa0687110:intron | 25.0% |
| !! | AATTGCACATTTCTTTTGTT+TGG | + | chr4_4:51875167-51875186 | Msa0687110:CDS | 25.0% |
| ! | TAAATGATAATCTTGACAAG+AGG | + | chr4_4:51875482-51875501 | Msa0687110:CDS | 25.0% |
| ! | AAATGAAGGAATAAAAACAG+TGG | - | chr4_4:51875542-51875561 | None:intergenic | 25.0% |
| ! | ATTCTATAGTTGTGAAATGA+AGG | - | chr4_4:51875556-51875575 | None:intergenic | 25.0% |
| ! | CATTTCACAACTATAGAATA+TGG | + | chr4_4:51875557-51875576 | Msa0687110:CDS | 25.0% |
| !! | TATAGAATATGGTCCTTTTT+GGG | + | chr4_4:51875568-51875587 | Msa0687110:CDS | 25.0% |
| !!! | TTTTGGTTTATATGTTGTTG+TGG | + | chr4_4:51875756-51875775 | Msa0687110:intron | 25.0% |
| ! | GTGAAAATAAAAAACACATG+GGG | - | chr4_4:51875940-51875959 | None:intergenic | 25.0% |
| ! | GGTGAAAATAAAAAACACAT+GGG | - | chr4_4:51875941-51875960 | None:intergenic | 25.0% |
| ! | ATTTATAATGATACGTCCAA+AGG | - | chr4_4:51875983-51876002 | None:intergenic | 25.0% |
| ! | TTAACCTCTTTAGACATAAT+CGG | + | chr4_4:51876178-51876197 | Msa0687110:intron | 25.0% |
| ! | AAATGCTAAAAGAAAACTCA+TGG | - | chr4_4:51876363-51876382 | None:intergenic | 25.0% |
| !! | ATAATTTTAGACCCCAAAAA+TGG | + | chr4_4:51876553-51876572 | Msa0687110:intron | 25.0% |
| !!! | TGATGAAAATACCATTTTTG+GGG | - | chr4_4:51876567-51876586 | None:intergenic | 25.0% |
| !! | GATGATGAAAATACCATTTT+TGG | - | chr4_4:51876569-51876588 | None:intergenic | 25.0% |
| !!! | GCTACTTTTCTATTTACTAT+AGG | - | chr4_4:51876663-51876682 | None:intergenic | 25.0% |
| ! | GAGAGACATTTGATATATTA+AGG | + | chr4_4:51876782-51876801 | Msa0687110:intron | 25.0% |
| !!! | ACAAGAGTTATTGTCTTTTT+TGG | + | chr4_4:51876840-51876859 | Msa0687110:intron | 25.0% |
| ! | TGAGATGATGATAAATGTAT+TGG | + | chr4_4:51876927-51876946 | Msa0687110:intron | 25.0% |
| !! | ATGATGATAAATGTATTGGT+TGG | + | chr4_4:51876931-51876950 | Msa0687110:intron | 25.0% |
| !!! | TATTTTAATGCTCATTCATC+AGG | + | chr4_4:51877145-51877164 | Msa0687110:CDS | 25.0% |
| ! | GAATTGCAGTTTATAACATT+TGG | + | chr4_4:51877267-51877286 | Msa0687110:intron | 25.0% |
| !!! | ATTTTTTTGGAGAAAGTTTC+GGG | - | chr4_4:51877861-51877880 | None:intergenic | 25.0% |
| !!! | GATTTTTTTGGAGAAAGTTT+CGG | - | chr4_4:51877862-51877881 | None:intergenic | 25.0% |
| !!! | TAAAAAGGATCGGATTTTTT+TGG | - | chr4_4:51877874-51877893 | None:intergenic | 25.0% |
| !! | GTAAAAAGTGTAAAAAGGAT+CGG | - | chr4_4:51877884-51877903 | None:intergenic | 25.0% |
| !! | GGTAAGTAAAAAGTGTAAAA+AGG | - | chr4_4:51877889-51877908 | None:intergenic | 25.0% |
| ! | TACAATACTCAATATATCAG+TGG | - | chr4_4:51878278-51878297 | None:intergenic | 25.0% |
| ! | TGAAGAAGGATTAATACATA+TGG | - | chr4_4:51878459-51878478 | None:intergenic | 25.0% |
| ! | TCTTATTCTCTTTTGTGGTA+GGG | - | chr4_4:51874310-51874329 | None:intergenic | 30.0% |
| ! | TTCTTATTCTCTTTTGTGGT+AGG | - | chr4_4:51874311-51874330 | None:intergenic | 30.0% |
| ! | CTTGTTCTTATTCTCTTTTG+TGG | - | chr4_4:51874315-51874334 | None:intergenic | 30.0% |
| GGTTTCACTCTATCTTTATA+TGG | - | chr4_4:51874341-51874360 | None:intergenic | 30.0% | |
| ! | TTTCTAGTAGAGAATGGAAA+TGG | + | chr4_4:51874430-51874449 | Msa0687110:exon | 30.0% |
| TATGTAGAAATGGAAAGTGA+AGG | + | chr4_4:51874491-51874510 | Msa0687110:CDS | 30.0% | |
| ! | CCATAAGAAGTTTGATAACT+TGG | - | chr4_4:51874540-51874559 | None:intergenic | 30.0% |
| CCAAGTTATCAAACTTCTTA+TGG | + | chr4_4:51874537-51874556 | Msa0687110:CDS | 30.0% | |
| TTATCAAACTTCTTATGGCA+TGG | + | chr4_4:51874542-51874561 | Msa0687110:CDS | 30.0% | |
| CATTATATGATATGTGACTC+AGG | + | chr4_4:51874717-51874736 | Msa0687110:intron | 30.0% | |
| AAAGTCTATGTTTGGTATCA+CGG | - | chr4_4:51875038-51875057 | None:intergenic | 30.0% | |
| TTTATCATCTTATAGAGGGT+TGG | + | chr4_4:51875055-51875074 | Msa0687110:intron | 30.0% | |
| TAATTATATGCAGTGGTTTG+AGG | + | chr4_4:51875094-51875113 | Msa0687110:intron | 30.0% | |
| CAAGAAAGAGTTAAAGAAAG+AGG | - | chr4_4:51875243-51875262 | None:intergenic | 30.0% | |
| CTGCAACACCAATATTTATT+GGG | + | chr4_4:51875393-51875412 | Msa0687110:intron | 30.0% | |
| TGCAACACCAATATTTATTG+GGG | + | chr4_4:51875394-51875413 | Msa0687110:intron | 30.0% | |
| ! | CTATAGAATATGGTCCTTTT+TGG | + | chr4_4:51875567-51875586 | Msa0687110:CDS | 30.0% |
| TATATGTTGTTGTGGTGTAT+AGG | + | chr4_4:51875764-51875783 | Msa0687110:intron | 30.0% | |
| ACAAACATTCTCTACACATT+CGG | + | chr4_4:51875843-51875862 | Msa0687110:CDS | 30.0% | |
| GATATTGTCTTACACAGTAA+CGG | - | chr4_4:51875877-51875896 | None:intergenic | 30.0% | |
| GTGTATGTGTTAAAACGTAA+AGG | - | chr4_4:51875918-51875937 | None:intergenic | 30.0% | |
| GGGTGAAAATAAAAAACACA+TGG | - | chr4_4:51875942-51875961 | None:intergenic | 30.0% | |
| !!! | TTTTTTATTTTCACCCCTCA+CGG | + | chr4_4:51875946-51875965 | Msa0687110:intron | 30.0% |
| AAAGTAGTACAATACCATAG+TGG | + | chr4_4:51876041-51876060 | Msa0687110:intron | 30.0% | |
| GAAATAACCATGCAACAATT+GGG | + | chr4_4:51876069-51876088 | Msa0687110:intron | 30.0% | |
| AAATAACCATGCAACAATTG+GGG | + | chr4_4:51876070-51876089 | Msa0687110:intron | 30.0% | |
| GATTATGTCTAGAGAAGTTA+AGG | - | chr4_4:51876123-51876142 | None:intergenic | 30.0% | |
| GATTATGTCTAAAGAGGTTA+AGG | - | chr4_4:51876179-51876198 | None:intergenic | 30.0% | |
| TCATGGAGTTTAAGGAAAAA+GGG | - | chr4_4:51876346-51876365 | None:intergenic | 30.0% | |
| AAGAAAACTCATGGAGTTTA+AGG | - | chr4_4:51876354-51876373 | None:intergenic | 30.0% | |
| CATTATTCACTGTAAAAAGC+TGG | - | chr4_4:51876475-51876494 | None:intergenic | 30.0% | |
| GTAAATAGAAAAGTAGCTCT+TGG | + | chr4_4:51876666-51876685 | Msa0687110:intron | 30.0% | |
| ! | ATTTTTAACCAAGTGACCTT+AGG | - | chr4_4:51876693-51876712 | None:intergenic | 30.0% |
| !! | ATAAATGTATTGGTTGGTAC+AGG | + | chr4_4:51876937-51876956 | Msa0687110:intron | 30.0% |
| !! | TAAATGTATTGGTTGGTACA+GGG | + | chr4_4:51876938-51876957 | Msa0687110:intron | 30.0% |
| GTTCAAGGCCATATATTTAA+TGG | + | chr4_4:51876992-51877011 | Msa0687110:CDS | 30.0% | |
| TAGGGTAGCCATTAAATATA+TGG | - | chr4_4:51877003-51877022 | None:intergenic | 30.0% | |
| TTAAAATAACAGCCATGTCA+CGG | - | chr4_4:51877133-51877152 | None:intergenic | 30.0% | |
| ATAATAGCCAAGAACCAAAT+TGG | - | chr4_4:51877396-51877415 | None:intergenic | 30.0% | |
| GCTATTATATTCCCTTTCTT+TGG | + | chr4_4:51877408-51877427 | Msa0687110:CDS | 30.0% | |
| CACACGAAATAATTAATGTC+AGG | - | chr4_4:51877648-51877667 | None:intergenic | 30.0% | |
| AATTTGCCAACAGAAAGAAT+AGG | + | chr4_4:51877773-51877792 | Msa0687110:intron | 30.0% | |
| CATATACCTATTCTTTCTGT+TGG | - | chr4_4:51877782-51877801 | None:intergenic | 30.0% | |
| CAACAGAAAGAATAGGTATA+TGG | + | chr4_4:51877780-51877799 | Msa0687110:intron | 30.0% | |
| AATACTCAATATATCAGTGG+TGG | - | chr4_4:51878275-51878294 | None:intergenic | 30.0% | |
| !! | ATCCTGCATTTGTTATGTAT+TGG | + | chr4_4:51878408-51878427 | Msa0687110:three_prime_UTR | 30.0% |
| AACCAATACATAACAAATGC+AGG | - | chr4_4:51878413-51878432 | None:intergenic | 30.0% | |
| !!! | CTTGTTTTTGTAAGGAAGAG+AGG | - | chr4_4:51874258-51874277 | None:intergenic | 35.0% |
| ! | CTTATTCTCTTTTGTGGTAG+GGG | - | chr4_4:51874309-51874328 | None:intergenic | 35.0% |
| AAAGATAGAGTGAAACCACA+AGG | + | chr4_4:51874344-51874363 | Msa0687110:five_prime_UTR | 35.0% | |
| ! | TCTTAACTCTTGTTTCCTTG+TGG | - | chr4_4:51874362-51874381 | None:intergenic | 35.0% |
| GTTAAGACCTTATTAGAGAG+TGG | + | chr4_4:51874375-51874394 | Msa0687110:five_prime_UTR | 35.0% | |
| TTGCTTTCCACTCTCTAATA+AGG | - | chr4_4:51874385-51874404 | None:intergenic | 35.0% | |
| TTGCTGAAACGGTAATAGTT+GGG | + | chr4_4:51874465-51874484 | Msa0687110:CDS | 35.0% | |
| AGTTGGGAACTATGTAGAAA+TGG | + | chr4_4:51874481-51874500 | Msa0687110:CDS | 35.0% | |
| TGATTGATGAGAAACTAACC+TGG | - | chr4_4:51874607-51874626 | None:intergenic | 35.0% | |
| TATATGATATGTGACTCAGG+TGG | + | chr4_4:51874720-51874739 | Msa0687110:intron | 35.0% | |
| CAACTCTTCTATGGTATACT+TGG | + | chr4_4:51874808-51874827 | Msa0687110:CDS | 35.0% | |
| CAACATAGAGTATGCTAATG+AGG | - | chr4_4:51874849-51874868 | None:intergenic | 35.0% | |
| TTTCAGAAGCCATGTTATTC+AGG | + | chr4_4:51874903-51874922 | Msa0687110:CDS | 35.0% | |
| TTAAAGAAAGAGGTCAGAGT+AGG | - | chr4_4:51875233-51875252 | None:intergenic | 35.0% | |
| !! | ATAAATATTGGTGTTGCAGG+TGG | - | chr4_4:51875392-51875411 | None:intergenic | 35.0% |
| !! | CCAATAAATATTGGTGTTGC+AGG | - | chr4_4:51875395-51875414 | None:intergenic | 35.0% |
| CCTGCAACACCAATATTTAT+TGG | + | chr4_4:51875392-51875411 | Msa0687110:intron | 35.0% | |
| ATGCACACCCCAATAAATAT+TGG | - | chr4_4:51875404-51875423 | None:intergenic | 35.0% | |
| ATAATCTTGACAAGAGGACT+TGG | + | chr4_4:51875488-51875507 | Msa0687110:CDS | 35.0% | |
| ! | AGGACTTGGACTTACATTTT+CGG | + | chr4_4:51875502-51875521 | Msa0687110:CDS | 35.0% |
| TGAAGGAATAAAAACAGTGG+TGG | - | chr4_4:51875539-51875558 | None:intergenic | 35.0% | |
| GAATGTGTAGAGAATGTTTG+TGG | - | chr4_4:51875844-51875863 | None:intergenic | 35.0% | |
| CAAACATTCTCTACACATTC+GGG | + | chr4_4:51875844-51875863 | Msa0687110:CDS | 35.0% | |
| AAACATTCTCTACACATTCG+GGG | + | chr4_4:51875845-51875864 | Msa0687110:CDS | 35.0% | |
| CGAAATAACCATGCAACAAT+TGG | + | chr4_4:51876068-51876087 | Msa0687110:intron | 35.0% | |
| CTAAAGAGGTTAAGGACTTA+AGG | - | chr4_4:51876171-51876190 | None:intergenic | 35.0% | |
| TGTTCCGATTATGTCTAAAG+AGG | - | chr4_4:51876185-51876204 | None:intergenic | 35.0% | |
| ! | TTTTAACCCCAAAATACCCT+TGG | + | chr4_4:51876297-51876316 | Msa0687110:intron | 35.0% |
| CTCATGGAGTTTAAGGAAAA+AGG | - | chr4_4:51876347-51876366 | None:intergenic | 35.0% | |
| CCATTTCAAAGAAAGAACCT+TGG | - | chr4_4:51876396-51876415 | None:intergenic | 35.0% | |
| ! | CCAAGGTTCTTTCTTTGAAA+TGG | + | chr4_4:51876393-51876412 | Msa0687110:intron | 35.0% |
| ! | TAACCTTTTACTCTCTGAGT+CGG | - | chr4_4:51876757-51876776 | None:intergenic | 35.0% |
| !!! | GGATTTTAAGGCAACATACA+TGG | + | chr4_4:51876861-51876880 | Msa0687110:intron | 35.0% |
| !! | TATATGGCCTTGAACTTTTG+TGG | - | chr4_4:51876987-51877006 | None:intergenic | 35.0% |
| CACACCATTATACTTTGTGT+GGG | + | chr4_4:51877299-51877318 | Msa0687110:CDS | 35.0% | |
| TTCTCCCACACAAAGTATAA+TGG | - | chr4_4:51877306-51877325 | None:intergenic | 35.0% | |
| AAGTTTATGCAAACGTGCAT+TGG | + | chr4_4:51877350-51877369 | Msa0687110:CDS | 35.0% | |
| AACCAAATTGGAATAACCAC+TGG | - | chr4_4:51877384-51877403 | None:intergenic | 35.0% | |
| !! | GGTTATTCCAATTTGGTTCT+TGG | + | chr4_4:51877386-51877405 | Msa0687110:CDS | 35.0% |
| ! | AATTGATGGGTCCAAAGAAA+GGG | - | chr4_4:51877422-51877441 | None:intergenic | 35.0% |
| CTCAGTCAAACTATTGGAAA+AGG | - | chr4_4:51877690-51877709 | None:intergenic | 35.0% | |
| CGTGATCAACGTATTTATAG+TGG | + | chr4_4:51878071-51878090 | Msa0687110:CDS | 35.0% | |
| TCAACGTATTTATAGTGGTG+TGG | + | chr4_4:51878076-51878095 | Msa0687110:CDS | 35.0% | |
| CAACGTATTTATAGTGGTGT+GGG | + | chr4_4:51878077-51878096 | Msa0687110:CDS | 35.0% | |
| GTGTACAAAATTCACCATAC+TGG | - | chr4_4:51878136-51878155 | None:intergenic | 35.0% | |
| !! | CATGTGTTCTACTTGTTATG+TGG | + | chr4_4:51878349-51878368 | Msa0687110:three_prime_UTR | 35.0% |
| !!! | GGTAGTTGAGTTTTTTGTCA+TGG | + | chr4_4:51878503-51878522 | Msa0687110:three_prime_UTR | 35.0% |
| GTTGCTGAAACGGTAATAGT+TGG | + | chr4_4:51874464-51874483 | Msa0687110:CDS | 40.0% | |
| AACTTGGACTTTATGTCCTG+TGG | - | chr4_4:51874524-51874543 | None:intergenic | 40.0% | |
| TCAAACTTCTTATGGCATGG+TGG | + | chr4_4:51874545-51874564 | Msa0687110:CDS | 40.0% | |
| TGATGAGAAACTAACCTGGT+TGG | - | chr4_4:51874603-51874622 | None:intergenic | 40.0% | |
| ! | TCTATGGTATACTTGGTAGC+TGG | + | chr4_4:51874815-51874834 | Msa0687110:CDS | 40.0% |
| GTTATGTGTGTTCGGTATCA+CGG | + | chr4_4:51874965-51874984 | Msa0687110:intron | 40.0% | |
| ATGTCAGAATCAAGACGACT+CGG | + | chr4_4:51874993-51875012 | Msa0687110:intron | 40.0% | |
| ! | TCCAACTTATAGCTTGTGCA+AGG | + | chr4_4:51875198-51875217 | Msa0687110:CDS | 40.0% |
| ACCTTGCACAAGCTATAAGT+TGG | - | chr4_4:51875202-51875221 | None:intergenic | 40.0% | |
| GGTCATAACAAGACCCAAAA+AGG | - | chr4_4:51875584-51875603 | None:intergenic | 40.0% | |
| TTATGACCACTTACACTGCT+TGG | + | chr4_4:51875596-51875615 | Msa0687110:CDS | 40.0% | |
| AAGATACCAAGCAGTGTAAG+TGG | - | chr4_4:51875605-51875624 | None:intergenic | 40.0% | |
| ACAATTGCAGCTGTTCTTCA+CGG | + | chr4_4:51875625-51875644 | Msa0687110:CDS | 40.0% | |
| ATGTTGTTGTGGTGTATAGG+TGG | + | chr4_4:51875767-51875786 | Msa0687110:intron | 40.0% | |
| AACATTCTCTACACATTCGG+GGG | + | chr4_4:51875846-51875865 | Msa0687110:CDS | 40.0% | |
| AGGCAAGTAAAATACCGTGA+GGG | - | chr4_4:51875963-51875982 | None:intergenic | 40.0% | |
| AAGGCAAGTAAAATACCGTG+AGG | - | chr4_4:51875964-51875983 | None:intergenic | 40.0% | |
| ! | CACGGTATTTTACTTGCCTT+TGG | + | chr4_4:51875964-51875983 | Msa0687110:intron | 40.0% |
| ! | GGTTATTTCGCTTTCCACTA+TGG | - | chr4_4:51876058-51876077 | None:intergenic | 40.0% |
| TTTAAGCCCCAATTGTTGCA+TGG | - | chr4_4:51876079-51876098 | None:intergenic | 40.0% | |
| AGCATTTAGCTAGAAAGCCA+AGG | + | chr4_4:51876376-51876395 | Msa0687110:intron | 40.0% | |
| AAGAAGACCCTCATAGATTC+AGG | + | chr4_4:51876446-51876465 | Msa0687110:intron | 40.0% | |
| AAAAGTAGCTCTTGGACCTA+AGG | + | chr4_4:51876674-51876693 | Msa0687110:intron | 40.0% | |
| ! | AACCTTTTACTCTCTGAGTC+GGG | - | chr4_4:51876756-51876775 | None:intergenic | 40.0% |
| GAAGTGAAGTGAAGAACCAA+GGG | - | chr4_4:51876820-51876839 | None:intergenic | 40.0% | |
| TGAAGTGAAGTGAAGAACCA+AGG | - | chr4_4:51876821-51876840 | None:intergenic | 40.0% | |
| TGTCAGTGTCAGCACATATA+GGG | - | chr4_4:51877021-51877040 | None:intergenic | 40.0% | |
| TTGTCAGTGTCAGCACATAT+AGG | - | chr4_4:51877022-51877041 | None:intergenic | 40.0% | |
| ATCGGCTACAGCAGTTTATT+GGG | + | chr4_4:51877046-51877065 | Msa0687110:CDS | 40.0% | |
| ACAGCAGTTTATTGGGCATT+TGG | + | chr4_4:51877053-51877072 | Msa0687110:CDS | 40.0% | |
| ! | TGGAAGAAGAGCAAAAGCAT+TGG | - | chr4_4:51877099-51877118 | None:intergenic | 40.0% |
| ! | AATGTGTTGCTAGCTAGCTA+GGG | - | chr4_4:51877178-51877197 | None:intergenic | 40.0% |
| GCACACCATTATACTTTGTG+TGG | + | chr4_4:51877298-51877317 | Msa0687110:CDS | 40.0% | |
| TTTGTGTGGGAGAAAACAGT+AGG | + | chr4_4:51877312-51877331 | Msa0687110:CDS | 40.0% | |
| TTGTGTGGGAGAAAACAGTA+GGG | + | chr4_4:51877313-51877332 | Msa0687110:CDS | 40.0% | |
| TGCCAGTGGTTATTCCAATT+TGG | + | chr4_4:51877379-51877398 | Msa0687110:CDS | 40.0% | |
| ! | GAATTGATGGGTCCAAAGAA+AGG | - | chr4_4:51877423-51877442 | None:intergenic | 40.0% |
| TGTAAACGGTGAAACTGACA+AGG | - | chr4_4:51877461-51877480 | None:intergenic | 40.0% | |
| AAAGGTGAAGATGTGAGCAA+GGG | - | chr4_4:51877493-51877512 | None:intergenic | 40.0% | |
| TAAAGGTGAAGATGTGAGCA+AGG | - | chr4_4:51877494-51877513 | None:intergenic | 40.0% | |
| TCGAGCAGAGGATGATTTAA+AGG | - | chr4_4:51877511-51877530 | None:intergenic | 40.0% | |
| ATATTATACCTGTCGAGCAG+AGG | - | chr4_4:51877523-51877542 | None:intergenic | 40.0% | |
| CTACTGCTCAGTCAAACTAT+TGG | - | chr4_4:51877696-51877715 | None:intergenic | 40.0% | |
| !! | TCCCAAGTTTGTTGGAAGAT+GGG | + | chr4_4:51878038-51878057 | Msa0687110:CDS | 40.0% |
| ACCCATCTTCCAACAAACTT+GGG | - | chr4_4:51878042-51878061 | None:intergenic | 40.0% | |
| TACCCATCTTCCAACAAACT+TGG | - | chr4_4:51878043-51878062 | None:intergenic | 40.0% | |
| !! | AAGTTTGTTGGAAGATGGGT+AGG | + | chr4_4:51878042-51878061 | Msa0687110:CDS | 40.0% |
| CAAATCCAAAGCCCACAATT+AGG | - | chr4_4:51878104-51878123 | None:intergenic | 40.0% | |
| !! | CTAATTGTGGGCTTTGGATT+TGG | + | chr4_4:51878102-51878121 | Msa0687110:CDS | 40.0% |
| GTACACCAGATTGACACATT+TGG | + | chr4_4:51878150-51878169 | Msa0687110:CDS | 40.0% | |
| AGAGTCCAAATGTGTCAATC+TGG | - | chr4_4:51878158-51878177 | None:intergenic | 40.0% | |
| ACTCAATATATCAGTGGTGG+TGG | - | chr4_4:51878272-51878291 | None:intergenic | 40.0% | |
| TGTATTGCACGATCTTGATG+AGG | + | chr4_4:51878294-51878313 | Msa0687110:three_prime_UTR | 40.0% | |
| GGCTTCGATGAATCGATTAA+TGG | + | chr4_4:51878315-51878334 | Msa0687110:three_prime_UTR | 40.0% | |
| AAGTGAAGGAAAACCACCAC+AGG | + | chr4_4:51874505-51874524 | Msa0687110:CDS | 45.0% | |
| TTGGACTTTATGTCCTGTGG+TGG | - | chr4_4:51874521-51874540 | None:intergenic | 45.0% | |
| ! | GTGGTTCTGCTTATGATGCT+TGG | + | chr4_4:51874564-51874583 | Msa0687110:CDS | 45.0% |
| ! | ACCATACTCATTTTCCCAGC+TGG | + | chr4_4:51874762-51874781 | Msa0687110:CDS | 45.0% |
| ! | CCATACTCATTTTCCCAGCT+GGG | + | chr4_4:51874763-51874782 | Msa0687110:CDS | 45.0% |
| ! | CAGTGGTTTGAGGTTCTTGA+TGG | + | chr4_4:51875104-51875123 | Msa0687110:intron | 45.0% |
| !! | AGGTTCTTGATGGACTCCTA+GGG | + | chr4_4:51875114-51875133 | Msa0687110:CDS | 45.0% |
| AAGAAAGAGGTCAGAGTAGG+TGG | - | chr4_4:51875230-51875249 | None:intergenic | 45.0% | |
| TGTTGTGGTGTATAGGTGGA+AGG | + | chr4_4:51875771-51875790 | Msa0687110:intron | 45.0% | |
| GGCAAGTAAAATACCGTGAG+GGG | - | chr4_4:51875962-51875981 | None:intergenic | 45.0% | |
| AACCCCAAAATACCCTTGGT+AGG | + | chr4_4:51876301-51876320 | Msa0687110:intron | 45.0% | |
| !!! | ACGCCTACCAAGGGTATTTT+GGG | - | chr4_4:51876307-51876326 | None:intergenic | 45.0% |
| AAAATACCCTTGGTAGGCGT+GGG | + | chr4_4:51876307-51876326 | Msa0687110:intron | 45.0% | |
| CTGGATGCCTGAATCTATGA+GGG | - | chr4_4:51876456-51876475 | None:intergenic | 45.0% | |
| ATCCCGACTCAGAGAGTAAA+AGG | + | chr4_4:51876751-51876770 | Msa0687110:intron | 45.0% | |
| GGGAAATAATGCATGCGATG+TGG | + | chr4_4:51876958-51876977 | Msa0687110:intron | 45.0% | |
| GTGGAAGCCACAAAAGTTCA+AGG | + | chr4_4:51876977-51876996 | Msa0687110:CDS | 45.0% | |
| GCTGACACTGACAATTCCAT+CGG | + | chr4_4:51877028-51877047 | Msa0687110:CDS | 45.0% | |
| CAATAAACTGCTGTAGCCGA+TGG | - | chr4_4:51877047-51877066 | None:intergenic | 45.0% | |
| ! | CATCGGCTACAGCAGTTTAT+TGG | + | chr4_4:51877045-51877064 | Msa0687110:CDS | 45.0% |
| ! | ATGTCACGGAAGGGTGATTT+TGG | - | chr4_4:51877119-51877138 | None:intergenic | 45.0% |
| AAAATCACCCTTCCGTGACA+TGG | + | chr4_4:51877118-51877137 | Msa0687110:CDS | 45.0% | |
| ATAACAGCCATGTCACGGAA+GGG | - | chr4_4:51877128-51877147 | None:intergenic | 45.0% | |
| AATAACAGCCATGTCACGGA+AGG | - | chr4_4:51877129-51877148 | None:intergenic | 45.0% | |
| ! | GAATGTGTTGCTAGCTAGCT+AGG | - | chr4_4:51877179-51877198 | None:intergenic | 45.0% |
| GATCCAACGGTGGAATTGAT+GGG | - | chr4_4:51877435-51877454 | None:intergenic | 45.0% | |
| AGATCCAACGGTGGAATTGA+TGG | - | chr4_4:51877436-51877455 | None:intergenic | 45.0% | |
| ACTGACAAGGAGAGATCCAA+CGG | - | chr4_4:51877448-51877467 | None:intergenic | 45.0% | |
| AAGGGCTGGGATGATGTAAA+CGG | - | chr4_4:51877475-51877494 | None:intergenic | 45.0% | |
| TAAATCATCCTCTGCTCGAC+AGG | + | chr4_4:51877512-51877531 | Msa0687110:CDS | 45.0% | |
| ! | TTTGGAGAAAGTTTCGGGTC+TGG | - | chr4_4:51877856-51877875 | None:intergenic | 45.0% |
| GAACAACCTCCCAAGTTTGT+TGG | + | chr4_4:51878030-51878049 | Msa0687110:CDS | 45.0% | |
| CATCTTCCAACAAACTTGGG+AGG | - | chr4_4:51878039-51878058 | None:intergenic | 45.0% | |
| !! | CTCCCAAGTTTGTTGGAAGA+TGG | + | chr4_4:51878037-51878056 | Msa0687110:CDS | 45.0% |
| !! | ATTGTGGGCTTTGGATTTGG+TGG | + | chr4_4:51878105-51878124 | Msa0687110:CDS | 45.0% |
| !! | TTGTGGGCTTTGGATTTGGT+GGG | + | chr4_4:51878106-51878125 | Msa0687110:CDS | 45.0% |
| ! | ATGGTTGGAACAGAAGGTGT+TGG | - | chr4_4:51878207-51878226 | None:intergenic | 45.0% |
| !! | TATATTTATATATTGTTATA+TGG | + | chr4_4:51874657-51874676 | Msa0687110:intron | 5.0% |
| !! | CAAAATTAATTAATTAATAT+TGG | - | chr4_4:51875741-51875760 | None:intergenic | 5.0% |
| !!! | CAATATTAATTAATTAATTT+TGG | + | chr4_4:51875739-51875758 | Msa0687110:intron | 5.0% |
| !!! | AAATATAGAATTATTTTATT+TGG | - | chr4_4:51875813-51875832 | None:intergenic | 5.0% |
| GTTTAGCTGTGCTTCCAACC+AGG | + | chr4_4:51874586-51874605 | Msa0687110:CDS | 50.0% | |
| CCCAGCTGGGAAAATGAGTA+TGG | - | chr4_4:51874766-51874785 | None:intergenic | 50.0% | |
| !! | GAGGTTCTTGATGGACTCCT+AGG | + | chr4_4:51875113-51875132 | Msa0687110:CDS | 50.0% |
| ATGGACTCCTAGGGAAACAC+TGG | + | chr4_4:51875123-51875142 | Msa0687110:CDS | 50.0% | |
| CGTTTCTCCAGTGTTTCCCT+AGG | - | chr4_4:51875133-51875152 | None:intergenic | 50.0% | |
| AGGGAAACACTGGAGAAACG+TGG | + | chr4_4:51875133-51875152 | Msa0687110:CDS | 50.0% | |
| GGGAAACACTGGAGAAACGT+GGG | + | chr4_4:51875134-51875153 | Msa0687110:CDS | 50.0% | |
| ! | GGTGGAAGGAGTGAAGCATT+CGG | + | chr4_4:51875785-51875804 | Msa0687110:intron | 50.0% |
| ! | GTGGAAGGAGTGAAGCATTC+GGG | + | chr4_4:51875786-51875805 | Msa0687110:CDS | 50.0% |
| !!! | CGCCTACCAAGGGTATTTTG+GGG | - | chr4_4:51876306-51876325 | None:intergenic | 50.0% |
| !!! | CACGCCTACCAAGGGTATTT+TGG | - | chr4_4:51876308-51876327 | None:intergenic | 50.0% |
| CAAAATACCCTTGGTAGGCG+TGG | + | chr4_4:51876306-51876325 | Msa0687110:intron | 50.0% | |
| GCTGGATGCCTGAATCTATG+AGG | - | chr4_4:51876457-51876476 | None:intergenic | 50.0% | |
| CTCTTGGACCTAAGGTCACT+TGG | + | chr4_4:51876682-51876701 | Msa0687110:intron | 50.0% | |
| AAGGTGCAAGTTCGAACCCT+TGG | + | chr4_4:51876801-51876820 | Msa0687110:intron | 50.0% | |
| ! | TGCATTGGTGAGATTGCCAG+TGG | + | chr4_4:51877365-51877384 | Msa0687110:CDS | 50.0% |
| TGAAGATGTGAGCAAGGGCT+GGG | - | chr4_4:51877488-51877507 | None:intergenic | 50.0% | |
| ! | AGAAAGTTTCGGGTCTGGTC+TGG | - | chr4_4:51877851-51877870 | None:intergenic | 50.0% |
| GTGTGTGATGCAGAATGCTG+TGG | + | chr4_4:51878008-51878027 | Msa0687110:intron | 50.0% | |
| AGTGGTGTGGGTCCTAATTG+TGG | + | chr4_4:51878089-51878108 | Msa0687110:CDS | 50.0% | |
| GTGGTGTGGGTCCTAATTGT+GGG | + | chr4_4:51878090-51878109 | Msa0687110:CDS | 50.0% | |
| TGGGTCCTAATTGTGGGCTT+TGG | + | chr4_4:51878096-51878115 | Msa0687110:CDS | 50.0% | |
| !! | AAGGTGTTGGTGGAGGACAT+TGG | - | chr4_4:51878194-51878213 | None:intergenic | 50.0% |
| !! | GTTGGAACAGAAGGTGTTGG+TGG | - | chr4_4:51878204-51878223 | None:intergenic | 50.0% |
| !! | TATCAGTGGTGGTGGTGATG+CGG | - | chr4_4:51878264-51878283 | None:intergenic | 50.0% |
| TCCCAGCTGGGAATGCTTTC+TGG | + | chr4_4:51874775-51874794 | Msa0687110:CDS | 55.0% | |
| !! | GCCAGAAAGCATTCCCAGCT+GGG | - | chr4_4:51874779-51874798 | None:intergenic | 55.0% |
| !! | TGCCAGAAAGCATTCCCAGC+TGG | - | chr4_4:51874780-51874799 | None:intergenic | 55.0% |
| ACACTGGAGAAACGTGGGCT+TGG | + | chr4_4:51875139-51875158 | Msa0687110:CDS | 55.0% | |
| CACTGGAGAAACGTGGGCTT+GGG | + | chr4_4:51875140-51875159 | Msa0687110:CDS | 55.0% | |
| TGCAGCTGTTCTTCACGGTC+AGG | + | chr4_4:51875630-51875649 | Msa0687110:CDS | 55.0% | |
| GTTGCTAGCTAGCTAGGGCT+AGG | - | chr4_4:51877173-51877192 | None:intergenic | 55.0% | |
| GGACCCATCAATTCCACCGT+TGG | + | chr4_4:51877429-51877448 | Msa0687110:CDS | 55.0% | |
| GACAAGGAGAGATCCAACGG+TGG | - | chr4_4:51877445-51877464 | None:intergenic | 55.0% | |
| GTGAAGATGTGAGCAAGGGC+TGG | - | chr4_4:51877489-51877508 | None:intergenic | 55.0% | |
| GTCTGGTCTGGTCTGCTAGA+CGG | - | chr4_4:51877834-51877853 | None:intergenic | 55.0% | |
| !! | TGGGCTTTGGATTTGGTGGG+TGG | + | chr4_4:51878109-51878128 | Msa0687110:CDS | 55.0% |
| !! | GGGCTTTGGATTTGGTGGGT+GGG | + | chr4_4:51878110-51878129 | Msa0687110:CDS | 55.0% |
| ! | ATTTGGTGGGTGGGCCAGTA+TGG | + | chr4_4:51878119-51878138 | Msa0687110:CDS | 55.0% |
| !! | GGAACAGAAGGTGTTGGTGG+AGG | - | chr4_4:51878201-51878220 | None:intergenic | 55.0% |
| GGTGGCATGGTTGGAACAGA+AGG | - | chr4_4:51878213-51878232 | None:intergenic | 55.0% | |
| ATTCAGCTGGTGAGGTGGCA+TGG | - | chr4_4:51878226-51878245 | None:intergenic | 55.0% | |
| GTTGCATTCAGCTGGTGAGG+TGG | - | chr4_4:51878231-51878250 | None:intergenic | 55.0% | |
| ATACCCTTGGTAGGCGTGGG+AGG | + | chr4_4:51876310-51876329 | Msa0687110:intron | 60.0% | |
| TTGCCTCCCACGCCTACCAA+GGG | - | chr4_4:51876316-51876335 | None:intergenic | 60.0% | |
| TTTGCCTCCCACGCCTACCA+AGG | - | chr4_4:51876317-51876336 | None:intergenic | 60.0% | |
| ! | GTTTCGGGTCTGGTCTGGTC+TGG | - | chr4_4:51877846-51877865 | None:intergenic | 60.0% |
| AGCTGGTGAGGTGGCATGGT+TGG | - | chr4_4:51878222-51878241 | None:intergenic | 60.0% | |
| GCGGTTGCATTCAGCTGGTG+AGG | - | chr4_4:51878234-51878253 | None:intergenic | 60.0% | |
| AAGGCGCGGTTGCATTCAGC+TGG | - | chr4_4:51878239-51878258 | None:intergenic | 60.0% | |
| !! | TGGTGGTGGTGATGCGGTGA+AGG | - | chr4_4:51878258-51878277 | None:intergenic | 60.0% |
| ! | GTGGTGATGCGGTGAAGGCG+CGG | - | chr4_4:51878253-51878272 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 51874246 | 51878587 | 51874246 | ID=Msa0687110;Name=Msa0687110 |
| chr4_4 | mRNA | 51874246 | 51878587 | 51874246 | ID=Msa0687110-mRNA-1;Parent=Msa0687110;Name=Msa0687110-mRNA-1;_AED=0.04;_eAED=0.04;_QI=197|1|1|1|1|1|8|306|490 |
| chr4_4 | exon | 51874246 | 51874607 | 51874246 | ID=Msa0687110-mRNA-1:exon:13470;Parent=Msa0687110-mRNA-1 |
| chr4_4 | exon | 51874739 | 51874924 | 51874739 | ID=Msa0687110-mRNA-1:exon:13471;Parent=Msa0687110-mRNA-1 |
| chr4_4 | exon | 51875107 | 51875219 | 51875107 | ID=Msa0687110-mRNA-1:exon:13472;Parent=Msa0687110-mRNA-1 |
| chr4_4 | exon | 51875468 | 51875651 | 51875468 | ID=Msa0687110-mRNA-1:exon:13473;Parent=Msa0687110-mRNA-1 |
| chr4_4 | exon | 51875786 | 51875883 | 51875786 | ID=Msa0687110-mRNA-1:exon:13474;Parent=Msa0687110-mRNA-1 |
| chr4_4 | exon | 51876959 | 51877166 | 51876959 | ID=Msa0687110-mRNA-1:exon:13475;Parent=Msa0687110-mRNA-1 |
| chr4_4 | exon | 51877276 | 51877533 | 51877276 | ID=Msa0687110-mRNA-1:exon:13476;Parent=Msa0687110-mRNA-1 |
| chr4_4 | exon | 51878021 | 51878587 | 51878021 | ID=Msa0687110-mRNA-1:exon:13477;Parent=Msa0687110-mRNA-1 |
| chr4_4 | five_prime_UTR | 51874246 | 51874442 | 51874246 | ID=Msa0687110-mRNA-1:five_prime_utr;Parent=Msa0687110-mRNA-1 |
| chr4_4 | CDS | 51874443 | 51874607 | 51874443 | ID=Msa0687110-mRNA-1:cds;Parent=Msa0687110-mRNA-1 |
| chr4_4 | CDS | 51874739 | 51874924 | 51874739 | ID=Msa0687110-mRNA-1:cds;Parent=Msa0687110-mRNA-1 |
| chr4_4 | CDS | 51875107 | 51875219 | 51875107 | ID=Msa0687110-mRNA-1:cds;Parent=Msa0687110-mRNA-1 |
| chr4_4 | CDS | 51875468 | 51875651 | 51875468 | ID=Msa0687110-mRNA-1:cds;Parent=Msa0687110-mRNA-1 |
| chr4_4 | CDS | 51875786 | 51875883 | 51875786 | ID=Msa0687110-mRNA-1:cds;Parent=Msa0687110-mRNA-1 |
| chr4_4 | CDS | 51876959 | 51877166 | 51876959 | ID=Msa0687110-mRNA-1:cds;Parent=Msa0687110-mRNA-1 |
| chr4_4 | CDS | 51877276 | 51877533 | 51877276 | ID=Msa0687110-mRNA-1:cds;Parent=Msa0687110-mRNA-1 |
| chr4_4 | CDS | 51878021 | 51878281 | 51878021 | ID=Msa0687110-mRNA-1:cds;Parent=Msa0687110-mRNA-1 |
| chr4_4 | three_prime_UTR | 51878282 | 51878587 | 51878282 | ID=Msa0687110-mRNA-1:three_prime_utr;Parent=Msa0687110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
