AlfalfaGEDB | Msa0688130

M. sativa cultivar zhongmu-4 / Msa0688130

KEGG: K08857
GO: GO:0000226 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0008152 GO:0008544 GO:0009888 GO:0009913 GO:0009987 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030154 GO:0030855 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043622 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048856 GO:0048869 GO:0055028 GO:0060429 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0688130	XP_013455754.1	96.246	1039	29	1	1	1039	1	1029	0.0	2063

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0688130	sp\|Q0WPH8\|NEK5_ARATH	60.849	636	200	13	1	608	1	615	0.0	706
Msa0688130	sp\|Q0WPH8\|NEK5_ARATH	50.189	265	105	6	772	1032	701	942	1.36e-51	200

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0688130	A0A072UV90	96.246	1039	29	1	1	1039	1	1029	0.0	2063

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0600630	Msa0688130	0.914319	2.203531e-84	-8.615850e-47
Msa0679720	Msa0688130	0.888549	5.348340e-73	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0688130	MtrunA17_Chr4g0025671	96.246	1039	29	1	1	1039	1	1029	0.0	2063
Msa0688130	MtrunA17_Chr2g0321841	60.581	1068	318	16	5	1036	1	1001	0.0	1164
Msa0688130	MtrunA17_Chr7g0260191	65.823	316	106	2	5	318	1	316	2.30e-148	456
Msa0688130	MtrunA17_Chr7g0260191	67.241	58	19	0	969	1026	553	610	6.47e-17	85.9
Msa0688130	MtrunA17_Chr1g0190831	74.427	262	67	0	5	266	1	262	1.07e-146	451
Msa0688130	MtrunA17_Chr1g0190831	47.368	114	52	2	914	1027	503	608	1.83e-18	90.5
Msa0688130	MtrunA17_Chr7g0258051	74.525	263	67	0	4	266	12	274	2.42e-146	451
Msa0688130	MtrunA17_Chr7g0258051	68.000	50	16	0	976	1025	583	632	4.11e-13	73.6
Msa0688130	MtrunA17_Chr1g0185221	70.611	262	77	0	5	266	1	262	3.49e-142	439
Msa0688130	MtrunA17_Chr1g0185221	68.966	58	18	0	969	1026	540	597	2.52e-17	87.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0688130	AT3G44200.2	60.849	636	200	13	1	608	1	615	0.0	706
Msa0688130	AT3G44200.2	50.189	265	105	6	772	1032	701	942	1.39e-52	200
Msa0688130	AT3G44200.1	60.849	636	200	13	1	608	1	615	0.0	706
Msa0688130	AT3G44200.1	50.189	265	105	6	772	1032	701	942	1.39e-52	200
Msa0688130	AT3G20860.1	64.087	323	97	4	5	309	1	322	5.30e-145	440
Msa0688130	AT3G20860.1	56.897	58	25	0	976	1033	353	410	1.56e-11	68.2
Msa0688130	AT1G54510.4	67.797	295	93	1	5	297	1	295	3.40e-144	445
Msa0688130	AT1G54510.4	68.966	58	18	0	969	1026	532	589	2.60e-16	84.3
Msa0688130	AT1G54510.2	67.797	295	93	1	5	297	1	295	3.40e-144	445
Msa0688130	AT1G54510.2	68.966	58	18	0	969	1026	532	589	2.60e-16	84.3

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Find 235 sgRNAs with CRISPR-Local

Find 394 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATAAGGTCTCCCCAA+GGG	0.641634	4_4:+53427112	Msa0688130:CDS
AAACTCGGAGCAATGAAAGT+AGG	0.502574	4_4:-53425108	None:intergenic
AAACTTGAGGATTTATGTGT+AGG	0.459698	4_4:-53426819	None:intergenic
AAAGCCATTTGGAAAAGATA+AGG	0.522753	4_4:+53427100	Msa0688130:CDS
AAATCTGATATTTGGTCATT+AGG	0.261155	4_4:+53423575	Msa0688130:CDS
AACAATTAGAAATATAATGA+TGG	0.501681	4_4:+53424939	Msa0688130:CDS
AACATGGATCACGTCATCAA+AGG	0.583703	4_4:-53426562	None:intergenic
AACCAAATCGCCGTCTCCCT+TGG	0.405364	4_4:-53427128	None:intergenic
AACGAAGGGGAATAACATGG+AGG	0.756702	4_4:-53423938	None:intergenic
AACTACTATGGCGTATAACA+TGG	0.551076	4_4:-53426578	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGTATGTGTTGAAAAAAATC+AGG	+	chr4_4:53421812-53421831	Msa0688130:intron	30.0%
CCTTGAATTCAACAATGTAA+GGG	-	chr4_4:53422034-53422053	None:intergenic	30.0%
TCCTTGAATTCAACAATGTA+AGG	-	chr4_4:53422035-53422054	None:intergenic	30.0%
TTACATTGTTGAATTCAAGG+AGG	+	chr4_4:53422034-53422053	Msa0688130:CDS	30.0%
GCATATTCTACTTGTATTGT+AGG	+	chr4_4:53422595-53422614	Msa0688130:intron	30.0%
ATGCCAAATTTCTCAATGTT+TGG	+	chr4_4:53422727-53422746	Msa0688130:intron	30.0%
GACACTAAAACAAGATGATT+TGG	+	chr4_4:53423364-53423383	Msa0688130:CDS	30.0%
TAACTGTGTATTTGTGGTTA+AGG	-	chr4_4:53423450-53423469	None:intergenic	30.0%
ATCTTGTAACTGTGTATTTG+TGG	-	chr4_4:53423456-53423475	None:intergenic	30.0%
AAATACACAGTTACAAGATG+TGG	+	chr4_4:53423457-53423476	Msa0688130:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	53421121	53427454	53421121	ID=Msa0688130;Name=Msa0688130
chr4_4	mRNA	53421121	53427454	53421121	ID=Msa0688130-mRNA-1;Parent=Msa0688130;Name=Msa0688130-mRNA-1;_AED=0.06;_eAED=0.06;_QI=436\|1\|1\|1\|1\|1\|14\|246\|1039
chr4_4	exon	53421121	53421654	53421121	ID=Msa0688130-mRNA-1:exon:14148;Parent=Msa0688130-mRNA-1
chr4_4	exon	53421813	53421879	53421813	ID=Msa0688130-mRNA-1:exon:14149;Parent=Msa0688130-mRNA-1
chr4_4	exon	53422005	53422070	53422005	ID=Msa0688130-mRNA-1:exon:14150;Parent=Msa0688130-mRNA-1
chr4_4	exon	53422617	53422663	53422617	ID=Msa0688130-mRNA-1:exon:14151;Parent=Msa0688130-mRNA-1
chr4_4	exon	53422805	53422850	53422805	ID=Msa0688130-mRNA-1:exon:14152;Parent=Msa0688130-mRNA-1
chr4_4	exon	53423034	53423114	53423034	ID=Msa0688130-mRNA-1:exon:14153;Parent=Msa0688130-mRNA-1
chr4_4	exon	53423207	53423249	53423207	ID=Msa0688130-mRNA-1:exon:14154;Parent=Msa0688130-mRNA-1
chr4_4	exon	53423345	53423394	53423345	ID=Msa0688130-mRNA-1:exon:14155;Parent=Msa0688130-mRNA-1
chr4_4	exon	53423515	53423596	53423515	ID=Msa0688130-mRNA-1:exon:14156;Parent=Msa0688130-mRNA-1
chr4_4	exon	53423683	53423732	53423683	ID=Msa0688130-mRNA-1:exon:14157;Parent=Msa0688130-mRNA-1
chr4_4	exon	53423887	53423960	53423887	ID=Msa0688130-mRNA-1:exon:14158;Parent=Msa0688130-mRNA-1
chr4_4	exon	53424210	53424261	53424210	ID=Msa0688130-mRNA-1:exon:14159;Parent=Msa0688130-mRNA-1
chr4_4	exon	53424604	53425224	53424604	ID=Msa0688130-mRNA-1:exon:14160;Parent=Msa0688130-mRNA-1
chr4_4	exon	53425466	53427454	53425466	ID=Msa0688130-mRNA-1:exon:14161;Parent=Msa0688130-mRNA-1
chr4_4	five_prime_UTR	53421121	53421556	53421121	ID=Msa0688130-mRNA-1:five_prime_utr;Parent=Msa0688130-mRNA-1
chr4_4	CDS	53421557	53421654	53421557	ID=Msa0688130-mRNA-1:cds;Parent=Msa0688130-mRNA-1
chr4_4	CDS	53421813	53421879	53421813	ID=Msa0688130-mRNA-1:cds;Parent=Msa0688130-mRNA-1
chr4_4	CDS	53422005	53422070	53422005	ID=Msa0688130-mRNA-1:cds;Parent=Msa0688130-mRNA-1
chr4_4	CDS	53422617	53422663	53422617	ID=Msa0688130-mRNA-1:cds;Parent=Msa0688130-mRNA-1
chr4_4	CDS	53422805	53422850	53422805	ID=Msa0688130-mRNA-1:cds;Parent=Msa0688130-mRNA-1
chr4_4	CDS	53423034	53423114	53423034	ID=Msa0688130-mRNA-1:cds;Parent=Msa0688130-mRNA-1
chr4_4	CDS	53423207	53423249	53423207	ID=Msa0688130-mRNA-1:cds;Parent=Msa0688130-mRNA-1
chr4_4	CDS	53423345	53423394	53423345	ID=Msa0688130-mRNA-1:cds;Parent=Msa0688130-mRNA-1
chr4_4	CDS	53423515	53423596	53423515	ID=Msa0688130-mRNA-1:cds;Parent=Msa0688130-mRNA-1
chr4_4	CDS	53423683	53423732	53423683	ID=Msa0688130-mRNA-1:cds;Parent=Msa0688130-mRNA-1
chr4_4	CDS	53423887	53423960	53423887	ID=Msa0688130-mRNA-1:cds;Parent=Msa0688130-mRNA-1
chr4_4	CDS	53424210	53424261	53424210	ID=Msa0688130-mRNA-1:cds;Parent=Msa0688130-mRNA-1
chr4_4	CDS	53424604	53425224	53424604	ID=Msa0688130-mRNA-1:cds;Parent=Msa0688130-mRNA-1
chr4_4	CDS	53425466	53427208	53425466	ID=Msa0688130-mRNA-1:cds;Parent=Msa0688130-mRNA-1
chr4_4	three_prime_UTR	53427209	53427454	53427209	ID=Msa0688130-mRNA-1:three_prime_utr;Parent=Msa0688130-mRNA-1

Gene Sequence

>Msa0688130

ATGGAATCTAAGATGGATCAGTATGAGATCATGGAACAGATCGGTCGTGGAGCTTTTGGTGCTGCTATTCTTGTTAATCATAAAGCTGAGAAGAAAAAGTATGTGTTGAAAAAAATCAGGCTTGCTAGACAGACTGAAAGATGCAGAAGATCTGCTCATCAAGAGATGGCTCTTATTGCAAGAATCAGGCACCCTTACATTGTTGAATTCAAGGAGGCTTGGGTTGAGAAGGGTTGTTATGTCTGCATTGTCACCGGATACTGTGAAGGTGGAGACATGGCTGAACTGATGAAAAAATCAAACGGTGCTTATTTTCCTGAGGAGAAACTCTGCAAATGGTTCACTCAATTACTGTTGGCAGTAGAATATCTTCATTCAAATTATGTTTTACATCGCGATCTAAAGTGCTCCAACATCTTTCTTACCAAGGATCAAGATATTCGCCTCGGTGATTTTGGACTTGCTAAGACACTAAAACAAGATGATTTGGCTTCTTCGGTGGTAGGAACTCCGAATTACATGTGTCCTGAACTGCTTGCAGATATTCCGTATGGATTCAAATCTGATATTTGGTCATTAGGCTGCTGTGTATACGAGATGGCTGCTCATCGTCCTGCCTTTAAAGCGTTTGATATGGCAGGATTGATAAGCAAGATAAACCGTTCCTCTATTGGCCCTTTACCTCCATGTTATTCCCCTTCGTTGAAAATACTAATAAAAGGCATGTTGAGAAAAAGTCCCGAGCATCGACCAACAGCATCTGAGGTGTTGAAGCACCCTTATTTGCAACCTTACGTCGATCAATACCGTCCATCTTTCGCTCCTCTAACAGCCTTTTCTCCTGAAAAACCGATTTCTTCTGCCACTTATACTAAAAGACATATGGCTGAAAGTCAGAACAGTACTAGTTCAAGTAGTGACAAAGACAGCTTAATGTCAAATGAGAGAAACATTGAAACAACAGCGCCGAAGTGTGATAACAAAGCCACTGAGATGGATATTGCATTGATCGATGATGATGGCTCTGAGCTAGAGGTGAAAAAATCATCTCATAATGAACAGCATTCTAATGTTGAATCTAAACAGCCAAAAACAATTAGAAATATAATGATGGCATTGAAAGAAGGGAAAGGTAGAGAAGCAACTTCTCCGATGAGAGGCGGTAGAGAAGCAACTTCTCCGATGAGAGGCAGTCGTCTAAAGGCTGGTGGAGTATCGGCGCAGAAAGTAAATACAGACATATCATCTAAATTGCCTAAACCTACTTTCATTGCTCCGAGTTTGAAGCCTAATCTAGAGTCACCGACTGTTCCACCTGTAAAGGCATCCCCTGATTCTTCAAAACGGATATATGGATCTCATCAGTCAAAACTACAGTTACTGATGACAGAGCCCTCACCAAAAGTTAAACCGAAACATGATATGACTCCACCACCTTCTTCTATCAAACATGTAGAAGGGGATGGAGTTCCTCCTAGGCCAAGACAAAGAACTCCTCCAAGCTTACTTCGGCGGCCTACTTTTCCAGGACGAATGAGGCTGGCAGGGTTTGATGTTCCAAATGCAGCGAACGATAGCGGGAAGCTAGGTCCAAGTAATACAGGCCAGGAATCTGAGATGAGCCATTGTCATTTGTTCAATGGCAATGTACCGCGTATTTCTAGACCGATTACTAGAGAACCTCATAAGGCTTTTGAAAGAAATTCTAAAGCAATGCAAACAGAGAGTAGTAATTCTGCCTCGTCTTCGGTTTCTATTCAGGGATGTGAACTTGCTGATGATGCAACAACTTTTATTGACATGAGAGAACATATACTTCCTGATCATGACAATGTAACAAAAAGTGTCGGTGTAGAATCACGTCCAGACAGTAGTCCGTCAACAACCTGTTCGCGTTGTACAATGACTGAAGAAGCGTCAGAGGAAACTTGTGAAGTCACCCTGAATTTTCAGAATACTATTACTAGAAATGAAAAAGTGAGTTCCAATTTAACACTTGATCACCCTGTTGAAAATTCTAAGAAAATGTTTGCTTCTGAAGACAGTCTTCCGAGAAATCAGACAACTGTATCTACTGCTTCTACATGTGATGATAGATCAGTTGATATACCTACTGCTTCTATGTGTGATAATAGATATGTTGATACATCTACGGAAGTGGCCGAAGAAATCGAAGGTCTTCGAGATACTTCTAATGAAATGGCTTTAACCAAGTCTCTTAAACATCCACACTCAACTTCTGTAGAAAAGTCTGTTTGTGAAGAAGTTGGTTCGGTAAACAAACTCAATGATAGGCCTGAAACAGTCACTGATGATGACAAATTCACGGTGAAGGACCGATTGTCATTGGTCGCGGAAACTGCTCCTGTAATTACCTCTACTAAAGCATCGAGCCAGAAAGTTTTGCAAGAGAAAGGAACTGTAATGCAGAATCCAGCACAAGAAAGGCCAGATACTAGTCATCTTCCTGCAGCCTTTGATGACGTGATCCATGTTATACGCCATAGTAGTTACCGTGTTGGGAGTGATCAGCCGGTAATGGAATCGGTTGAAATGGGAGTTCAGAATGTCGATGTTGGGAAGTTTATCAATGTTATGAGGGATGACATAGAAATGAGAAACACAAACCCTCAAATGACTCTTAAATCTTCGAATTCCTCTGAAGCCGAAACCTTGAAATCTAATATTTCTGATCAGTTGGAAATGAGAAATACAAGCACAACCACCCCTCCTACACATAAATCCTCAAGTTTCTCCGATCCTGCGAGCTTGAAATCATCGAGCATTTCTGAAAATCCACAAGATGTGAGTAACACTGTTTCTTTAGTTTCGGAATCTGATTCATCCGAGCACAGTAAATGCAACACGCCTACAACCAAAGACAAACCACCGGAAAAGGAAATACTCGATGTGAAATCATTCAGGCAGAGAGCAGAAGCACTTGAAGAGCTCTTGGAATTGTCTGCAGAGTTGCTGCAACATAATCGATTGGAGGAACTTCAAGTTGTACTAAAGCCATTTGGAAAAGATAAGGTCTCCCCAAGGGAGACGGCGATTTGGTTAGCAAGGAGTCTTAAGGGAATGATGTCCGAGGAAAATGGAGGACGTTGTTCATCATGA

Protein sequence

>Msa0688130

MESKMDQYEIMEQIGRGAFGAAILVNHKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARIRHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAELMKKSNGAYFPEEKLCKWFTQLLLAVEYLHSNYVLHRDLKCSNIFLTKDQDIRLGDFGLAKTLKQDDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCVYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPCYSPSLKILIKGMLRKSPEHRPTASEVLKHPYLQPYVDQYRPSFAPLTAFSPEKPISSATYTKRHMAESQNSTSSSSDKDSLMSNERNIETTAPKCDNKATEMDIALIDDDGSELEVKKSSHNEQHSNVESKQPKTIRNIMMALKEGKGREATSPMRGGREATSPMRGSRLKAGGVSAQKVNTDISSKLPKPTFIAPSLKPNLESPTVPPVKASPDSSKRIYGSHQSKLQLLMTEPSPKVKPKHDMTPPPSSIKHVEGDGVPPRPRQRTPPSLLRRPTFPGRMRLAGFDVPNAANDSGKLGPSNTGQESEMSHCHLFNGNVPRISRPITREPHKAFERNSKAMQTESSNSASSSVSIQGCELADDATTFIDMREHILPDHDNVTKSVGVESRPDSSPSTTCSRCTMTEEASEETCEVTLNFQNTITRNEKVSSNLTLDHPVENSKKMFASEDSLPRNQTTVSTASTCDDRSVDIPTASMCDNRYVDTSTEVAEEIEGLRDTSNEMALTKSLKHPHSTSVEKSVCEEVGSVNKLNDRPETVTDDDKFTVKDRLSLVAETAPVITSTKASSQKVLQEKGTVMQNPAQERPDTSHLPAAFDDVIHVIRHSSYRVGSDQPVMESVEMGVQNVDVGKFINVMRDDIEMRNTNPQMTLKSSNSSEAETLKSNISDQLEMRNTSTTTPPTHKSSSFSDPASLKSSSISENPQDVSNTVSLVSESDSSEHSKCNTPTTKDKPPEKEILDVKSFRQRAEALEELLELSAELLQHNRLEELQVVLKPFGKDKVSPRETAIWLARSLKGMMSEENGGRCSS*