Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0689020 | XP_039688999.1 | 98.003 | 651 | 13 | 0 | 1 | 651 | 1 | 651 | 0.0 | 1313 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0689020 | sp|Q9LX73|UFL1_ARATH | 59.969 | 652 | 241 | 3 | 1 | 651 | 1 | 633 | 0.0 | 783 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0689020 | A0A396I7Z3 | 98.003 | 651 | 13 | 0 | 1 | 651 | 1 | 651 | 0.0 | 1313 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0651830 | Msa0689020 | 0.813379 | 2.637533e-51 | -8.615850e-47 |
| Msa0689020 | Msa0694330 | 0.830176 | 3.402948e-55 | -8.615850e-47 |
| Msa0689020 | Msa0983770 | 0.809807 | 1.576524e-50 | -8.615850e-47 |
| Msa0689020 | Msa1143710 | 0.808180 | 3.515824e-50 | -8.615850e-47 |
| Msa0379610 | Msa0689020 | 0.805068 | 1.595966e-49 | -8.615850e-47 |
| Msa0280150 | Msa0689020 | 0.800061 | 1.719495e-48 | -8.615850e-47 |
| Msa0556280 | Msa0689020 | 0.815723 | 7.989541e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0689020 | MtrunA17_Chr4g0030541 | 98.003 | 651 | 13 | 0 | 1 | 651 | 1 | 651 | 0.0 | 1313 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0689020 | AT3G46220.1 | 59.969 | 652 | 241 | 3 | 1 | 651 | 1 | 633 | 0.0 | 783 |
| Msa0689020 | AT3G46220.4 | 59.969 | 652 | 241 | 3 | 1 | 651 | 1 | 633 | 0.0 | 782 |
| Msa0689020 | AT3G46220.2 | 59.242 | 660 | 241 | 4 | 1 | 651 | 1 | 641 | 0.0 | 775 |
| Msa0689020 | AT3G46220.3 | 58.129 | 652 | 237 | 4 | 1 | 651 | 1 | 617 | 0.0 | 749 |
Find 139 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCCAGTCTTTGTTTAA+TGG | 0.150208 | 4_4:+55698950 | Msa0689020:CDS |
| GGATTTGATTGCGTCTATTT+TGG | 0.155034 | 4_4:+55698627 | Msa0689020:CDS |
| TCTAACAAAGCACACATATT+TGG | 0.182367 | 4_4:+55699993 | Msa0689020:CDS |
| GGCCTTTGGCTAACAAATTA+AGG | 0.230421 | 4_4:+55701186 | Msa0689020:CDS |
| GAGCTTCTTCATACTGCTTC+TGG | 0.232031 | 4_4:+55697675 | Msa0689020:CDS |
| ATCATCTTCAAACAATTCTA+AGG | 0.250541 | 4_4:-55701470 | None:intergenic |
| AAATTATTACGGAGTCTTAC+TGG | 0.262997 | 4_4:+55698515 | Msa0689020:CDS |
| CTAACAAAGCACACATATTT+GGG | 0.278844 | 4_4:+55699994 | Msa0689020:CDS |
| TAAAGGGCCAAAGAAGAAAA+AGG | 0.281971 | 4_4:+55700811 | Msa0689020:CDS |
| GAAGTATGTTCTTGGTTATC+AGG | 0.289727 | 4_4:-55700878 | None:intergenic |
| AGGTTTGCCTTCAGGATATC+TGG | 0.297355 | 4_4:-55699580 | None:intergenic |
| TTAGCTGTTTCAAGGTCTTT+AGG | 0.316152 | 4_4:+55700671 | Msa0689020:CDS |
| TCAAACAAGCATGCTGATAA+AGG | 0.317743 | 4_4:+55700794 | Msa0689020:CDS |
| ATCGATCTTGCTGATGTTAC+TGG | 0.324699 | 4_4:+55698415 | Msa0689020:CDS |
| GTAACAAGAGGTTTGCCTTC+AGG | 0.329190 | 4_4:-55699588 | None:intergenic |
| AGACCTTGTTCTTCAAAATC+AGG | 0.330357 | 4_4:-55701058 | None:intergenic |
| GTTGCTGAGGTGAAGAAGTT+AGG | 0.347127 | 4_4:+55698379 | Msa0689020:CDS |
| ATCTGTACAATTGGCACTTA+AGG | 0.357383 | 4_4:+55699896 | Msa0689020:CDS |
| TGTTTGTTGTGGGACGAAAT+TGG | 0.365397 | 4_4:-55697356 | None:intergenic |
| CGAAACGATTCTTAGGCCTT+TGG | 0.365599 | 4_4:+55701172 | Msa0689020:CDS |
| GCAGAATTTACTACAAGAAA+TGG | 0.369393 | 4_4:+55698895 | Msa0689020:CDS |
| GCTAGTGGTGTGGCTGTTGA+TGG | 0.370444 | 4_4:+55698923 | Msa0689020:CDS |
| CAGATTCAAAGCCAGGTTCT+AGG | 0.373865 | 4_4:+55700954 | Msa0689020:CDS |
| CAAAGGCCTAAGAATCGTTT+CGG | 0.385086 | 4_4:-55701171 | None:intergenic |
| CCAGCCCATTCAATTCTTGC+AGG | 0.389058 | 4_4:+55699427 | Msa0689020:CDS |
| CGACAAACTTGACAGTGTTA+TGG | 0.390294 | 4_4:+55698864 | Msa0689020:CDS |
| GGTATTTGCTGTTGCTCAAA+AGG | 0.395194 | 4_4:+55699180 | Msa0689020:intron |
| TAGAGACATTAGCTGTTTCA+AGG | 0.395214 | 4_4:+55700663 | Msa0689020:CDS |
| TGTAAAAGATGAGGGCAATA+AGG | 0.397783 | 4_4:-55699838 | None:intergenic |
| GTTGAGTGAGTCCAGTGATA+TGG | 0.400982 | 4_4:+55700757 | Msa0689020:CDS |
| AACGAAATAGACTCGGACTT+TGG | 0.407948 | 4_4:-55701781 | None:intergenic |
| AAATTAAGGCCTACAATAAT+CGG | 0.409313 | 4_4:+55701200 | Msa0689020:CDS |
| ATGATCCCGAAACGATTCTT+AGG | 0.413786 | 4_4:+55701165 | Msa0689020:CDS |
| CTTGTTCTATGTTGAGAAGT+TGG | 0.414057 | 4_4:+55698444 | Msa0689020:CDS |
| AGGTGCTGCAAGGGGAATTA+CGG | 0.415022 | 4_4:+55698838 | Msa0689020:CDS |
| GAATCAAGGGGAAATTATTA+CGG | 0.415672 | 4_4:+55698504 | Msa0689020:CDS |
| TACTCTTTGATTGTTTGTTG+TGG | 0.417523 | 4_4:-55697367 | None:intergenic |
| TCGATCGGATAATCGAATAC+TGG | 0.419545 | 4_4:-55697601 | None:intergenic |
| ACTCTTTGATTGTTTGTTGT+GGG | 0.426157 | 4_4:-55697366 | None:intergenic |
| CTGCAAGAATTGAATGGGCT+GGG | 0.428207 | 4_4:-55699426 | None:intergenic |
| CATAACACTGTCAAGTTTGT+CGG | 0.432174 | 4_4:-55698863 | None:intergenic |
| ATGTAGTCAGATTGCTTTGA+CGG | 0.434988 | 4_4:+55698576 | Msa0689020:CDS |
| GAGTCTATTTCGTTTGGTCC+TGG | 0.436482 | 4_4:+55701790 | Msa0689020:CDS |
| AGTTACCTGCAAGAATTGAA+TGG | 0.442405 | 4_4:-55699432 | None:intergenic |
| TGATATGCTTCTTCATGACT+TGG | 0.442992 | 4_4:+55701632 | Msa0689020:CDS |
| TCTAGCATCTCAATCATTGA+TGG | 0.444749 | 4_4:-55699624 | None:intergenic |
| CTCCATGATCCATTCTTCTG+AGG | 0.446930 | 4_4:-55701017 | None:intergenic |
| TCCATGATCCATTCTTCTGA+GGG | 0.447510 | 4_4:-55701016 | None:intergenic |
| ATGTATCCTTACCCCTTCTC+TGG | 0.448426 | 4_4:-55700919 | None:intergenic |
| AAGGACAGTAGCAGCTCCTA+TGG | 0.468025 | 4_4:+55701608 | Msa0689020:CDS |
| AAAATAGGTGAAAGGAAGGC+TGG | 0.472868 | 4_4:+55698760 | Msa0689020:intron |
| CCTCTGTCAATCTGTACAAT+TGG | 0.473516 | 4_4:+55699887 | Msa0689020:CDS |
| TCAGTAATCCCTCAGAAGAA+TGG | 0.473944 | 4_4:+55701008 | Msa0689020:CDS |
| AAGTCCGAGTCTATTTCGTT+TGG | 0.475727 | 4_4:+55701784 | Msa0689020:CDS |
| CAAACATCAGATTCAAAGCC+AGG | 0.475978 | 4_4:+55700947 | Msa0689020:CDS |
| ACAATTGCAGCTCTTTCTCC+AGG | 0.477560 | 4_4:-55701808 | None:intergenic |
| ATCCAAGTACCGATTATTGT+AGG | 0.478083 | 4_4:-55701209 | None:intergenic |
| GTTACCTGCAAGAATTGAAT+GGG | 0.480088 | 4_4:-55699431 | None:intergenic |
| CAAACAAGCATGCTGATAAA+GGG | 0.481031 | 4_4:+55700795 | Msa0689020:CDS |
| CAAGTCCATTAAACAAAGAC+TGG | 0.481057 | 4_4:-55698955 | None:intergenic |
| CCTGCAAGAATTGAATGGGC+TGG | 0.481773 | 4_4:-55699427 | None:intergenic |
| ACCATCACTCGCCATATCAC+TGG | 0.484013 | 4_4:-55700768 | None:intergenic |
| AAAGGCCTAAGAATCGTTTC+GGG | 0.485000 | 4_4:-55701170 | None:intergenic |
| TACAATAATCGGTACTTGGA+TGG | 0.492143 | 4_4:+55701211 | Msa0689020:CDS |
| CTTGCGGCGCAGTTGAATGT+TGG | 0.492333 | 4_4:+55698601 | Msa0689020:CDS |
| GGCCTACAATAATCGGTACT+TGG | 0.493020 | 4_4:+55701207 | Msa0689020:CDS |
| TTTGTTTAATGGACTTGTGA+AGG | 0.496709 | 4_4:+55698961 | Msa0689020:CDS |
| AATTATTACGGAGTCTTACT+GGG | 0.499853 | 4_4:+55698516 | Msa0689020:CDS |
| GGCGCAGTTGAATGTTGGTT+TGG | 0.502490 | 4_4:+55698606 | Msa0689020:CDS |
| GCAGAATTGATGTTGAATCA+AGG | 0.510377 | 4_4:+55698490 | Msa0689020:CDS |
| CATGGTTCGAGGTGCTGCAA+GGG | 0.511152 | 4_4:+55698829 | Msa0689020:CDS |
| GCTGAGCAGCAGCTTTATGA+AGG | 0.512016 | 4_4:+55700028 | Msa0689020:CDS |
| CTCATTAATCTCTTCAGCAA+TGG | 0.513124 | 4_4:-55698542 | None:intergenic |
| TTGCTGAGGTGAAGAAGTTA+GGG | 0.514417 | 4_4:+55698380 | Msa0689020:CDS |
| TTTGAAAATAGGTGAAAGGA+AGG | 0.516894 | 4_4:+55698756 | Msa0689020:intron |
| GGCCTTAATTTGTTAGCCAA+AGG | 0.518576 | 4_4:-55701188 | None:intergenic |
| AGTGATTCTTTCCTAGAACC+TGG | 0.521168 | 4_4:-55700965 | None:intergenic |
| CCGTTCGCGCTGGAGTACAT+TGG | 0.525009 | 4_4:+55699002 | Msa0689020:CDS |
| CAGAATTGATGTTGAATCAA+GGG | 0.534268 | 4_4:+55698491 | Msa0689020:CDS |
| CCTTGCAGCACCTCGAACCA+TGG | 0.535083 | 4_4:-55698828 | None:intergenic |
| AGAATCACTTAAAATGAAAG+AGG | 0.537589 | 4_4:+55700979 | Msa0689020:CDS |
| CCATGGTTCGAGGTGCTGCA+AGG | 0.539031 | 4_4:+55698828 | Msa0689020:CDS |
| TAATTCAACGACGTTTCGAT+CGG | 0.539095 | 4_4:-55697616 | None:intergenic |
| AATCTAAGAAAGGCCAGAGA+AGG | 0.539351 | 4_4:+55700906 | Msa0689020:CDS |
| ATGCTCTAGAACGTGGAAGC+TGG | 0.540745 | 4_4:+55699661 | Msa0689020:CDS |
| TGAACAAATGTTGTAACAAG+AGG | 0.541010 | 4_4:-55699600 | None:intergenic |
| ATTGCCAATGAAGTAAAAGC+AGG | 0.541196 | 4_4:+55700719 | Msa0689020:CDS |
| TTATCAGGACTACTTTCAGA+TGG | 0.542446 | 4_4:-55700863 | None:intergenic |
| TGTTGCTCGTGTTAGTGCCA+TGG | 0.543356 | 4_4:+55698811 | Msa0689020:CDS |
| TTGGCAATTGGTAAATCACC+AGG | 0.544699 | 4_4:-55700704 | None:intergenic |
| TCTTTAGGCACTGCAAAACC+TGG | 0.545497 | 4_4:+55700686 | Msa0689020:CDS |
| ATCTAAGAAAGGCCAGAGAA+GGG | 0.549986 | 4_4:+55700907 | Msa0689020:CDS |
| GAAAGGCCAGAGAAGGGGTA+AGG | 0.550861 | 4_4:+55700913 | Msa0689020:CDS |
| CGTGTTAGTGCCATGGTTCG+AGG | 0.554128 | 4_4:+55698818 | Msa0689020:CDS |
| GATTGCTTTGACGGAACTTG+CGG | 0.554644 | 4_4:+55698585 | Msa0689020:CDS |
| TCCCTCAGAAGAATGGATCA+TGG | 0.557735 | 4_4:+55701015 | Msa0689020:CDS |
| TTGTTTAATGGACTTGTGAA+GGG | 0.557946 | 4_4:+55698962 | Msa0689020:CDS |
| ACTTCCACAAAATCTAAGAA+AGG | 0.564114 | 4_4:+55700896 | Msa0689020:CDS |
| CCAATGTACTCCAGCGCGAA+CGG | 0.567999 | 4_4:-55699002 | None:intergenic |
| CCAGGACATTTGTGATCGCA+TGG | 0.577916 | 4_4:+55700631 | Msa0689020:intron |
| CTAACACGAGCAACATAAGC+AGG | 0.578723 | 4_4:-55698803 | None:intergenic |
| AAAGAACGGAGTTGACGTGC+AGG | 0.578778 | 4_4:+55701753 | Msa0689020:CDS |
| CAAGAAATGGATGGAGCTAG+TGG | 0.585358 | 4_4:+55698908 | Msa0689020:CDS |
| TAGGTGAAAGGAAGGCTGGA+AGG | 0.586646 | 4_4:+55698764 | Msa0689020:intron |
| CTAGCATCTCAATCATTGAT+GGG | 0.589079 | 4_4:-55699623 | None:intergenic |
| ATTTGCTAATGTATTTCCAG+TGG | 0.589588 | 4_4:-55700840 | None:intergenic |
| TGCAAGAATTGAATGGGCTG+GGG | 0.592851 | 4_4:-55699425 | None:intergenic |
| AAGCAGGGTATGATTCAAGC+AGG | 0.595048 | 4_4:+55700735 | Msa0689020:CDS |
| TGAAGAAGCATATCAACCAT+AGG | 0.596680 | 4_4:-55701624 | None:intergenic |
| TTTGCAAAAGAAACTTGATG+AGG | 0.603716 | 4_4:+55701292 | Msa0689020:CDS |
| TCTTGAGGTGTAAAAGATGA+GGG | 0.608610 | 4_4:-55699846 | None:intergenic |
| GGATCAACTGAGAAATGAGA+TGG | 0.608853 | 4_4:+55698357 | Msa0689020:intron |
| GATGCTAGATGCTGCTACTG+AGG | 0.610729 | 4_4:+55699638 | Msa0689020:CDS |
| ATCTTGAGGTGTAAAAGATG+AGG | 0.613240 | 4_4:-55699847 | None:intergenic |
| GAGCACAACAAATTAAAGAA+CGG | 0.615383 | 4_4:+55701739 | Msa0689020:CDS |
| AGTGATATGGCGAGTGATGG+TGG | 0.615512 | 4_4:+55700770 | Msa0689020:CDS |
| AGAATTGATGTTGAATCAAG+GGG | 0.617194 | 4_4:+55698492 | Msa0689020:CDS |
| TTGTGAAAAGAATGAATCCA+CGG | 0.617587 | 4_4:-55699206 | None:intergenic |
| ATGGTTCGAGGTGCTGCAAG+GGG | 0.617888 | 4_4:+55698830 | Msa0689020:CDS |
| TTTAATGGACTTGTGAAGGG+AGG | 0.618607 | 4_4:+55698965 | Msa0689020:CDS |
| CTGCAATTGTAAGACTTGAG+AGG | 0.619370 | 4_4:+55701821 | Msa0689020:CDS |
| TCCAGTGATATGGCGAGTGA+TGG | 0.621503 | 4_4:+55700767 | Msa0689020:CDS |
| GTTGGCTCAGAGTATTGTAA+CGG | 0.631287 | 4_4:+55698462 | Msa0689020:CDS |
| TTGCCAATGAAGTAAAAGCA+GGG | 0.631451 | 4_4:+55700720 | Msa0689020:CDS |
| GTGAAAGGAAGGCTGGAAGG+TGG | 0.632225 | 4_4:+55698767 | Msa0689020:CDS |
| TCTAAGAAAGGCCAGAGAAG+GGG | 0.639113 | 4_4:+55700908 | Msa0689020:CDS |
| AATTTACTACAAGAAATGGA+TGG | 0.641774 | 4_4:+55698899 | Msa0689020:CDS |
| AAGATCAATCGATCTCAACA+TGG | 0.659716 | 4_4:+55697524 | Msa0689020:exon |
| CTCACTATAGTTCCAAGGCG+CGG | 0.660395 | 4_4:-55698652 | None:intergenic |
| AGGACCAAACGAAATAGACT+CGG | 0.660752 | 4_4:-55701788 | None:intergenic |
| TGTTGCTCAAAAGGAATCCG+TGG | 0.667698 | 4_4:+55699189 | Msa0689020:CDS |
| ATTTAGTCCAGATATCCTGA+AGG | 0.672165 | 4_4:+55699573 | Msa0689020:intron |
| ACTGAGGATGCTCTAGAACG+TGG | 0.675489 | 4_4:+55699654 | Msa0689020:CDS |
| CCAATTGTACAGATTGACAG+AGG | 0.688898 | 4_4:-55699887 | None:intergenic |
| TTGCTGAAGAGATTAATGAG+AGG | 0.692613 | 4_4:+55698545 | Msa0689020:CDS |
| GAGAAATGAGATGGTTGCTG+AGG | 0.695502 | 4_4:+55698366 | Msa0689020:CDS |
| CAATTGTACAGATTGACAGA+GGG | 0.701278 | 4_4:-55699886 | None:intergenic |
| TAACAAAGCACACATATTTG+GGG | 0.706670 | 4_4:+55699995 | Msa0689020:CDS |
| AATGGATGGAGCTAGTGGTG+TGG | 0.751839 | 4_4:+55698913 | Msa0689020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCGTCTTTTTTTTTATT+AGG | + | chr4_4:55697735-55697754 | Msa0689020:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTGTGTGT+TGG | + | chr4_4:55698679-55698698 | Msa0689020:intron | 15.0% |
| !! | ATATGAAAACCATAAAATTT+AGG | - | chr4_4:55699082-55699101 | None:intergenic | 15.0% |
| !! | ATTATTAAATTATATCAGCA+AGG | - | chr4_4:55699797-55699816 | None:intergenic | 15.0% |
| !! | ATATAATTTAATAATGTTGC+AGG | + | chr4_4:55699802-55699821 | Msa0689020:intron | 15.0% |
| !! | TCAACAATCAATTATCAAAT+TGG | - | chr4_4:55697782-55697801 | None:intergenic | 20.0% |
| !!! | GATAATTGATTGTTGATAAT+CGG | + | chr4_4:55697786-55697805 | Msa0689020:intron | 20.0% |
| !! | TTAGGATGTAATTAAAAGAT+TGG | + | chr4_4:55698078-55698097 | Msa0689020:intron | 20.0% |
| !!! | AAATTGATGCCTAAATTTTA+TGG | + | chr4_4:55699070-55699089 | Msa0689020:intron | 20.0% |
| !!! | ATGTCCTTTTAAACTTATAA+TGG | - | chr4_4:55699331-55699350 | None:intergenic | 20.0% |
| !! | GAATTAATTCATTTATCTTG+AGG | - | chr4_4:55700085-55700104 | None:intergenic | 20.0% |
| !!! | GTTAATAAACATGATTTGTA+CGG | + | chr4_4:55700181-55700200 | Msa0689020:intron | 20.0% |
| !! | AAGAATAAGAGTTATATACA+TGG | - | chr4_4:55701364-55701383 | None:intergenic | 20.0% |
| !!! | AGATTTTGAAATACGGTTAA+GGG | - | chr4_4:55697474-55697493 | None:intergenic | 25.0% |
| ! | AATCGATCATCCATTAAATT+CGG | - | chr4_4:55697943-55697962 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTGTGTGTTGGTT+TGG | + | chr4_4:55698684-55698703 | Msa0689020:intron | 25.0% |
| !!! | TATGTGATGGTTTTGAAAAT+AGG | + | chr4_4:55698745-55698764 | Msa0689020:intron | 25.0% |
| ! | AATTTACTACAAGAAATGGA+TGG | + | chr4_4:55698899-55698918 | Msa0689020:CDS | 25.0% |
| !!! | ATGGTTTTCATATTTGAGTT+AGG | + | chr4_4:55699089-55699108 | Msa0689020:intron | 25.0% |
| !!! | TGTTTTTTATGTCACATGAT+AGG | + | chr4_4:55699159-55699178 | Msa0689020:intron | 25.0% |
| ! | ACTGCCATTATAAGTTTAAA+AGG | + | chr4_4:55699324-55699343 | Msa0689020:intron | 25.0% |
| ! | ATTTCCAAATGATAACCATT+TGG | + | chr4_4:55699477-55699496 | Msa0689020:intron | 25.0% |
| ! | ATATCTACATATGATCCAAA+TGG | - | chr4_4:55699495-55699514 | None:intergenic | 25.0% |
| !! | AGTTGTTGTTAGTTATATGT+TGG | + | chr4_4:55699750-55699769 | Msa0689020:intron | 25.0% |
| ! | TTTGTTAGACTGCAAAAAAT+GGG | - | chr4_4:55699982-55700001 | None:intergenic | 25.0% |
| ! | GAGGAAATAAATAATAGGAA+AGG | - | chr4_4:55700454-55700473 | None:intergenic | 25.0% |
| ! | GTAGTGAGGAAATAAATAAT+AGG | - | chr4_4:55700459-55700478 | None:intergenic | 25.0% |
| ! | AGAATCACTTAAAATGAAAG+AGG | + | chr4_4:55700979-55700998 | Msa0689020:CDS | 25.0% |
| ! | ACTTAGATAAAATCATATGC+AGG | - | chr4_4:55701111-55701130 | None:intergenic | 25.0% |
| ! | AAATTAAGGCCTACAATAAT+CGG | + | chr4_4:55701200-55701219 | Msa0689020:CDS | 25.0% |
| ! | CAAAAAAACAAATCAACACA+AGG | - | chr4_4:55701415-55701434 | None:intergenic | 25.0% |
| !!! | CTTGTGTTGATTTGTTTTTT+TGG | + | chr4_4:55701413-55701432 | Msa0689020:intron | 25.0% |
| ! | ATCATCTTCAAACAATTCTA+AGG | - | chr4_4:55701473-55701492 | None:intergenic | 25.0% |
| !! | TTTTACATAGGCATTTACTA+AGG | + | chr4_4:55701589-55701608 | Msa0689020:CDS | 25.0% |
| !! | ACTCTTTGATTGTTTGTTGT+GGG | - | chr4_4:55697369-55697388 | None:intergenic | 30.0% |
| ! | TACTCTTTGATTGTTTGTTG+TGG | - | chr4_4:55697370-55697389 | None:intergenic | 30.0% |
| !!! | GAGATTTTGAAATACGGTTA+AGG | - | chr4_4:55697475-55697494 | None:intergenic | 30.0% |
| !!! | TGCGTTGAGATTTTGAAATA+CGG | - | chr4_4:55697481-55697500 | None:intergenic | 30.0% |
| AGAAATTAGGCCGAATTTAA+TGG | + | chr4_4:55697930-55697949 | Msa0689020:intron | 30.0% | |
| CAGAATTGATGTTGAATCAA+GGG | + | chr4_4:55698491-55698510 | Msa0689020:CDS | 30.0% | |
| AGAATTGATGTTGAATCAAG+GGG | + | chr4_4:55698492-55698511 | Msa0689020:CDS | 30.0% | |
| GAATCAAGGGGAAATTATTA+CGG | + | chr4_4:55698504-55698523 | Msa0689020:CDS | 30.0% | |
| AAATTATTACGGAGTCTTAC+TGG | + | chr4_4:55698515-55698534 | Msa0689020:CDS | 30.0% | |
| AATTATTACGGAGTCTTACT+GGG | + | chr4_4:55698516-55698535 | Msa0689020:CDS | 30.0% | |
| AAAAACTCACTATAGTTCCA+AGG | - | chr4_4:55698660-55698679 | None:intergenic | 30.0% | |
| AACTGTGATTTCATATGTGA+TGG | + | chr4_4:55698732-55698751 | Msa0689020:intron | 30.0% | |
| !!! | TGGTTTTGAAAATAGGTGAA+AGG | + | chr4_4:55698752-55698771 | Msa0689020:intron | 30.0% |
| TTTGAAAATAGGTGAAAGGA+AGG | + | chr4_4:55698756-55698775 | Msa0689020:intron | 30.0% | |
| GCAGAATTTACTACAAGAAA+TGG | + | chr4_4:55698895-55698914 | Msa0689020:CDS | 30.0% | |
| ! | TTCTTCCAGTCTTTGTTTAA+TGG | + | chr4_4:55698950-55698969 | Msa0689020:CDS | 30.0% |
| !! | TTTGTTTAATGGACTTGTGA+AGG | + | chr4_4:55698961-55698980 | Msa0689020:CDS | 30.0% |
| !! | TTGTTTAATGGACTTGTGAA+GGG | + | chr4_4:55698962-55698981 | Msa0689020:CDS | 30.0% |
| TTGTGAAAAGAATGAATCCA+CGG | - | chr4_4:55699209-55699228 | None:intergenic | 30.0% | |
| TAAGCAAAAGTGAAAGACAA+GGG | - | chr4_4:55699248-55699267 | None:intergenic | 30.0% | |
| TTAAGCAAAAGTGAAAGACA+AGG | - | chr4_4:55699249-55699268 | None:intergenic | 30.0% | |
| TGATCCAAATGGTTATCATT+TGG | - | chr4_4:55699484-55699503 | None:intergenic | 30.0% | |
| AAATTGGATTGTGCAAACTT+AGG | - | chr4_4:55699557-55699576 | None:intergenic | 30.0% | |
| TGAACAAATGTTGTAACAAG+AGG | - | chr4_4:55699603-55699622 | None:intergenic | 30.0% | |
| ! | AACATTTTAGATGCATCTTG+AGG | - | chr4_4:55699864-55699883 | None:intergenic | 30.0% |
| CTTTGTTAGACTGCAAAAAA+TGG | - | chr4_4:55699983-55700002 | None:intergenic | 30.0% | |
| TCTAACAAAGCACACATATT+TGG | + | chr4_4:55699993-55700012 | Msa0689020:CDS | 30.0% | |
| CTAACAAAGCACACATATTT+GGG | + | chr4_4:55699994-55700013 | Msa0689020:CDS | 30.0% | |
| TAACAAAGCACACATATTTG+GGG | + | chr4_4:55699995-55700014 | Msa0689020:CDS | 30.0% | |
| CATTTATCTTGAGGTCTATA+TGG | - | chr4_4:55700076-55700095 | None:intergenic | 30.0% | |
| !!! | AAGCCATATTACTGATTTTG+TGG | + | chr4_4:55700108-55700127 | Msa0689020:intron | 30.0% |
| AAGATAAAGAAACCAAAAGC+TGG | - | chr4_4:55700484-55700503 | None:intergenic | 30.0% | |
| ATGGTAAAAAGAATAGTTGC+AGG | - | chr4_4:55700571-55700590 | None:intergenic | 30.0% | |
| ! | GCAACTATTCTTTTTACCAT+TGG | + | chr4_4:55700571-55700590 | Msa0689020:intron | 30.0% |
| ! | ATTTGCTAATGTATTTCCAG+TGG | - | chr4_4:55700843-55700862 | None:intergenic | 30.0% |
| !! | ATTTTGTGGAAGTATGTTCT+TGG | - | chr4_4:55700889-55700908 | None:intergenic | 30.0% |
| ACTTCCACAAAATCTAAGAA+AGG | + | chr4_4:55700896-55700915 | Msa0689020:CDS | 30.0% | |
| !! | ATTCCTGATTTTGAAGAACA+AGG | + | chr4_4:55701055-55701074 | Msa0689020:CDS | 30.0% |
| TTTGCAAAAGAAACTTGATG+AGG | + | chr4_4:55701292-55701311 | Msa0689020:CDS | 30.0% | |
| AGTTATATACATGGACACAA+CGG | - | chr4_4:55701355-55701374 | None:intergenic | 30.0% | |
| ! | GTTCAGATGAGTATCTTTTA+AGG | - | chr4_4:55701388-55701407 | None:intergenic | 30.0% |
| GTAAAGGTCTAAAAACGATA+TGG | + | chr4_4:55701698-55701717 | Msa0689020:intron | 30.0% | |
| GAGCACAACAAATTAAAGAA+CGG | + | chr4_4:55701739-55701758 | Msa0689020:CDS | 30.0% | |
| !! | TGATCTTCCGTTTTTCTTAG+CGG | - | chr4_4:55697418-55697437 | None:intergenic | 35.0% |
| AAGATCAATCGATCTCAACA+TGG | + | chr4_4:55697524-55697543 | Msa0689020:exon | 35.0% | |
| TAATTCAACGACGTTTCGAT+CGG | - | chr4_4:55697619-55697638 | None:intergenic | 35.0% | |
| ACGCGATCATGATTATTGTT+AGG | + | chr4_4:55697874-55697893 | Msa0689020:intron | 35.0% | |
| GAGAAATGAATTTGTGACTG+AGG | + | chr4_4:55697904-55697923 | Msa0689020:intron | 35.0% | |
| !! | ACACGATGGATTATACTGTT+AGG | + | chr4_4:55698025-55698044 | Msa0689020:intron | 35.0% |
| ACATCCTAATTTCTTCACCT+CGG | - | chr4_4:55698067-55698086 | None:intergenic | 35.0% | |
| ! | ATGTGATTGATTGTGCTGTT+AGG | + | chr4_4:55698336-55698355 | Msa0689020:intron | 35.0% |
| CTTGTTCTATGTTGAGAAGT+TGG | + | chr4_4:55698444-55698463 | Msa0689020:CDS | 35.0% | |
| GCAGAATTGATGTTGAATCA+AGG | + | chr4_4:55698490-55698509 | Msa0689020:CDS | 35.0% | |
| CTCATTAATCTCTTCAGCAA+TGG | - | chr4_4:55698545-55698564 | None:intergenic | 35.0% | |
| TTGCTGAAGAGATTAATGAG+AGG | + | chr4_4:55698545-55698564 | Msa0689020:CDS | 35.0% | |
| ATGTAGTCAGATTGCTTTGA+CGG | + | chr4_4:55698576-55698595 | Msa0689020:CDS | 35.0% | |
| ! | GGATTTGATTGCGTCTATTT+TGG | + | chr4_4:55698627-55698646 | Msa0689020:CDS | 35.0% |
| !!! | TGTTGGTTTGGATGTGTTTT+TGG | + | chr4_4:55698696-55698715 | Msa0689020:intron | 35.0% |
| CATAACACTGTCAAGTTTGT+CGG | - | chr4_4:55698866-55698885 | None:intergenic | 35.0% | |
| CAAGTCCATTAAACAAAGAC+TGG | - | chr4_4:55698958-55698977 | None:intergenic | 35.0% | |
| ! | TCATATTTGAGTTAGGCCTT+TGG | + | chr4_4:55699096-55699115 | Msa0689020:intron | 35.0% |
| GTTGATCATAAGCTAGAACT+AGG | - | chr4_4:55699288-55699307 | None:intergenic | 35.0% | |
| GTTACCTGCAAGAATTGAAT+GGG | - | chr4_4:55699434-55699453 | None:intergenic | 35.0% | |
| AGTTACCTGCAAGAATTGAA+TGG | - | chr4_4:55699435-55699454 | None:intergenic | 35.0% | |
| TCAGGATATCTGGACTAAAT+TGG | - | chr4_4:55699573-55699592 | None:intergenic | 35.0% | |
| ATTTAGTCCAGATATCCTGA+AGG | + | chr4_4:55699573-55699592 | Msa0689020:intron | 35.0% | |
| CTAGCATCTCAATCATTGAT+GGG | - | chr4_4:55699626-55699645 | None:intergenic | 35.0% | |
| TCTAGCATCTCAATCATTGA+TGG | - | chr4_4:55699627-55699646 | None:intergenic | 35.0% | |
| TGTAAAAGATGAGGGCAATA+AGG | - | chr4_4:55699841-55699860 | None:intergenic | 35.0% | |
| TCTTGAGGTGTAAAAGATGA+GGG | - | chr4_4:55699849-55699868 | None:intergenic | 35.0% | |
| ATCTTGAGGTGTAAAAGATG+AGG | - | chr4_4:55699850-55699869 | None:intergenic | 35.0% | |
| CAATTGTACAGATTGACAGA+GGG | - | chr4_4:55699889-55699908 | None:intergenic | 35.0% | |
| ATCTGTACAATTGGCACTTA+AGG | + | chr4_4:55699896-55699915 | Msa0689020:CDS | 35.0% | |
| GTGCGAAGCATAAATTAATG+AGG | - | chr4_4:55699934-55699953 | None:intergenic | 35.0% | |
| GCACCACAAAATCAGTAATA+TGG | - | chr4_4:55700114-55700133 | None:intergenic | 35.0% | |
| !!! | TACTGATTTTGTGGTGCAAA+TGG | + | chr4_4:55700117-55700136 | Msa0689020:intron | 35.0% |
| AGTACATCAAATTACTGCCA+TGG | + | chr4_4:55700287-55700306 | Msa0689020:intron | 35.0% | |
| ! | TTGAGTTGTCAATGTAGCTA+TGG | - | chr4_4:55700329-55700348 | None:intergenic | 35.0% |
| GGATGCATGCATATTAATGA+AGG | - | chr4_4:55700415-55700434 | None:intergenic | 35.0% | |
| GTAACTTAATTCTTGGCAGT+TGG | - | chr4_4:55700528-55700547 | None:intergenic | 35.0% | |
| CCAAGAATTAAGTTACCGTT+GGG | + | chr4_4:55700532-55700551 | Msa0689020:intron | 35.0% | |
| !!! | GGTAGACATTTTTTACCCAA+CGG | - | chr4_4:55700550-55700569 | None:intergenic | 35.0% |
| TACATGCATTAGGAAACCAA+TGG | - | chr4_4:55700590-55700609 | None:intergenic | 35.0% | |
| TTGGTTTCCTAATGCATGTA+TGG | + | chr4_4:55700590-55700609 | Msa0689020:intron | 35.0% | |
| ! | TAGAGACATTAGCTGTTTCA+AGG | + | chr4_4:55700663-55700682 | Msa0689020:CDS | 35.0% |
| ! | TTAGCTGTTTCAAGGTCTTT+AGG | + | chr4_4:55700671-55700690 | Msa0689020:CDS | 35.0% |
| ! | GCTTTTACTTCATTGGCAAT+TGG | - | chr4_4:55700719-55700738 | None:intergenic | 35.0% |
| ATTGCCAATGAAGTAAAAGC+AGG | + | chr4_4:55700719-55700738 | Msa0689020:CDS | 35.0% | |
| TTGCCAATGAAGTAAAAGCA+GGG | + | chr4_4:55700720-55700739 | Msa0689020:CDS | 35.0% | |
| !! | ATACCCTGCTTTTACTTCAT+TGG | - | chr4_4:55700726-55700745 | None:intergenic | 35.0% |
| TCAAACAAGCATGCTGATAA+AGG | + | chr4_4:55700794-55700813 | Msa0689020:CDS | 35.0% | |
| CAAACAAGCATGCTGATAAA+GGG | + | chr4_4:55700795-55700814 | Msa0689020:CDS | 35.0% | |
| TAAAGGGCCAAAGAAGAAAA+AGG | + | chr4_4:55700811-55700830 | Msa0689020:CDS | 35.0% | |
| AAAGGGCCAAAGAAGAAAAA+GGG | + | chr4_4:55700812-55700831 | Msa0689020:CDS | 35.0% | |
| TTATCAGGACTACTTTCAGA+TGG | - | chr4_4:55700866-55700885 | None:intergenic | 35.0% | |
| GAAGTATGTTCTTGGTTATC+AGG | - | chr4_4:55700881-55700900 | None:intergenic | 35.0% | |
| AGACCTTGTTCTTCAAAATC+AGG | - | chr4_4:55701061-55701080 | None:intergenic | 35.0% | |
| ACTGTGTGCTATAAATTGAC+AGG | + | chr4_4:55701137-55701156 | Msa0689020:intron | 35.0% | |
| !! | ATCCAAGTACCGATTATTGT+AGG | - | chr4_4:55701212-55701231 | None:intergenic | 35.0% |
| TACAATAATCGGTACTTGGA+TGG | + | chr4_4:55701211-55701230 | Msa0689020:CDS | 35.0% | |
| TACTTGGATGGAGAAAAAGA+AGG | + | chr4_4:55701223-55701242 | Msa0689020:CDS | 35.0% | |
| !! | TTAATGTGTTTTTGATGCCC+AGG | + | chr4_4:55701563-55701582 | Msa0689020:intron | 35.0% |
| ATGCCTATGTAAAACAACCT+GGG | - | chr4_4:55701583-55701602 | None:intergenic | 35.0% | |
| AATGCCTATGTAAAACAACC+TGG | - | chr4_4:55701584-55701603 | None:intergenic | 35.0% | |
| ! | TGAAGAAGCATATCAACCAT+AGG | - | chr4_4:55701627-55701646 | None:intergenic | 35.0% |
| TGATATGCTTCTTCATGACT+TGG | + | chr4_4:55701632-55701651 | Msa0689020:CDS | 35.0% | |
| ! | TTTTCTGTTGATGTTTCTCG+AGG | + | chr4_4:55701671-55701690 | Msa0689020:intron | 35.0% |
| TGTTTCTCGAGGTTTAGTAA+AGG | + | chr4_4:55701682-55701701 | Msa0689020:intron | 35.0% | |
| !! | TGTTTGTTGTGGGACGAAAT+TGG | - | chr4_4:55697359-55697378 | None:intergenic | 40.0% |
| AAACGCACCGCTAAGAAAAA+CGG | + | chr4_4:55697408-55697427 | Msa0689020:five_prime_UTR | 40.0% | |
| TCGATCGGATAATCGAATAC+TGG | - | chr4_4:55697604-55697623 | None:intergenic | 40.0% | |
| GTGACTGAGGTGAAGAAATT+AGG | + | chr4_4:55697917-55697936 | Msa0689020:intron | 40.0% | |
| GTAAGTGCTTGTTTACACGA+TGG | + | chr4_4:55698011-55698030 | Msa0689020:intron | 40.0% | |
| GGATCAACTGAGAAATGAGA+TGG | + | chr4_4:55698357-55698376 | Msa0689020:intron | 40.0% | |
| TTGCTGAGGTGAAGAAGTTA+GGG | + | chr4_4:55698380-55698399 | Msa0689020:CDS | 40.0% | |
| ATCGATCTTGCTGATGTTAC+TGG | + | chr4_4:55698415-55698434 | Msa0689020:CDS | 40.0% | |
| !! | GTTGGCTCAGAGTATTGTAA+CGG | + | chr4_4:55698462-55698481 | Msa0689020:CDS | 40.0% |
| AAAATAGGTGAAAGGAAGGC+TGG | + | chr4_4:55698760-55698779 | Msa0689020:intron | 40.0% | |
| CGACAAACTTGACAGTGTTA+TGG | + | chr4_4:55698864-55698883 | Msa0689020:CDS | 40.0% | |
| !! | TTTAATGGACTTGTGAAGGG+AGG | + | chr4_4:55698965-55698984 | Msa0689020:CDS | 40.0% |
| TATGAAGTAAGCCACTCCAA+AGG | - | chr4_4:55699115-55699134 | None:intergenic | 40.0% | |
| !! | GGTATTTGCTGTTGCTCAAA+AGG | + | chr4_4:55699180-55699199 | Msa0689020:intron | 40.0% |
| CTAGAACTAGGCGAAATGTT+TGG | - | chr4_4:55699276-55699295 | None:intergenic | 40.0% | |
| ! | ATGATCAACTGCTTTGAGCT+CGG | + | chr4_4:55699299-55699318 | Msa0689020:intron | 40.0% |
| TACGACGTTCTGCAAAAACT+TGG | + | chr4_4:55699398-55699417 | Msa0689020:CDS | 40.0% | |
| CCAATTGTACAGATTGACAG+AGG | - | chr4_4:55699890-55699909 | None:intergenic | 40.0% | |
| CCTCTGTCAATCTGTACAAT+TGG | + | chr4_4:55699887-55699906 | Msa0689020:CDS | 40.0% | |
| !! | GAATGCTTAGTTGATGACCA+TGG | - | chr4_4:55700307-55700326 | None:intergenic | 40.0% |
| TTAATATGCATGCATCCTGC+TGG | + | chr4_4:55700418-55700437 | Msa0689020:intron | 40.0% | |
| TAATATGCATGCATCCTGCT+GGG | + | chr4_4:55700419-55700438 | Msa0689020:intron | 40.0% | |
| GCCAAGAATTAAGTTACCGT+TGG | + | chr4_4:55700531-55700550 | Msa0689020:intron | 40.0% | |
| CCCAACGGTAACTTAATTCT+TGG | - | chr4_4:55700535-55700554 | None:intergenic | 40.0% | |
| CAGAGAACCATACATGCATT+AGG | - | chr4_4:55700600-55700619 | None:intergenic | 40.0% | |
| TCACAAATGTCCTGGTAGAA+GGG | - | chr4_4:55700626-55700645 | None:intergenic | 40.0% | |
| ATCACAAATGTCCTGGTAGA+AGG | - | chr4_4:55700627-55700646 | None:intergenic | 40.0% | |
| TTGGCAATTGGTAAATCACC+AGG | - | chr4_4:55700707-55700726 | None:intergenic | 40.0% | |
| AAGGGCCAAAGAAGAAAAAG+GGG | + | chr4_4:55700813-55700832 | Msa0689020:CDS | 40.0% | |
| ! | GCTTTCCCCTTTTTCTTCTT+TGG | - | chr4_4:55700821-55700840 | None:intergenic | 40.0% |
| !! | CTGGCCTTTCTTAGATTTTG+TGG | - | chr4_4:55700903-55700922 | None:intergenic | 40.0% |
| AATCTAAGAAAGGCCAGAGA+AGG | + | chr4_4:55700906-55700925 | Msa0689020:CDS | 40.0% | |
| ATCTAAGAAAGGCCAGAGAA+GGG | + | chr4_4:55700907-55700926 | Msa0689020:CDS | 40.0% | |
| CAAACATCAGATTCAAAGCC+AGG | + | chr4_4:55700947-55700966 | Msa0689020:CDS | 40.0% | |
| AGTGATTCTTTCCTAGAACC+TGG | - | chr4_4:55700968-55700987 | None:intergenic | 40.0% | |
| TCAGTAATCCCTCAGAAGAA+TGG | + | chr4_4:55701008-55701027 | Msa0689020:CDS | 40.0% | |
| TCCATGATCCATTCTTCTGA+GGG | - | chr4_4:55701019-55701038 | None:intergenic | 40.0% | |
| AGGTCTGCTATGAATGACTT+TGG | + | chr4_4:55701075-55701094 | Msa0689020:intron | 40.0% | |
| GGTCTGCTATGAATGACTTT+GGG | + | chr4_4:55701076-55701095 | Msa0689020:intron | 40.0% | |
| ATGATCCCGAAACGATTCTT+AGG | + | chr4_4:55701165-55701184 | Msa0689020:CDS | 40.0% | |
| AAAGGCCTAAGAATCGTTTC+GGG | - | chr4_4:55701173-55701192 | None:intergenic | 40.0% | |
| CAAAGGCCTAAGAATCGTTT+CGG | - | chr4_4:55701174-55701193 | None:intergenic | 40.0% | |
| GGCCTTTGGCTAACAAATTA+AGG | + | chr4_4:55701186-55701205 | Msa0689020:CDS | 40.0% | |
| !! | GGCCTTAATTTGTTAGCCAA+AGG | - | chr4_4:55701191-55701210 | None:intergenic | 40.0% |
| !! | ATGCCCAGGTTGTTTTACAT+AGG | + | chr4_4:55701577-55701596 | Msa0689020:intron | 40.0% |
| GATATGGATTCAACCTTTGC+AGG | + | chr4_4:55701714-55701733 | Msa0689020:intron | 40.0% | |
| AACGAAATAGACTCGGACTT+TGG | - | chr4_4:55701784-55701803 | None:intergenic | 40.0% | |
| AAGTCCGAGTCTATTTCGTT+TGG | + | chr4_4:55701784-55701803 | Msa0689020:CDS | 40.0% | |
| AGGACCAAACGAAATAGACT+CGG | - | chr4_4:55701791-55701810 | None:intergenic | 40.0% | |
| CTGCAATTGTAAGACTTGAG+AGG | + | chr4_4:55701821-55701840 | Msa0689020:CDS | 40.0% | |
| GAGCTTCTTCATACTGCTTC+TGG | + | chr4_4:55697675-55697694 | Msa0689020:CDS | 45.0% | |
| GTTGCCGAGGTGAAGAAATT+AGG | + | chr4_4:55698060-55698079 | Msa0689020:intron | 45.0% | |
| GAGAAATGAGATGGTTGCTG+AGG | + | chr4_4:55698366-55698385 | Msa0689020:CDS | 45.0% | |
| GTTGCTGAGGTGAAGAAGTT+AGG | + | chr4_4:55698379-55698398 | Msa0689020:CDS | 45.0% | |
| GATTGCTTTGACGGAACTTG+CGG | + | chr4_4:55698585-55698604 | Msa0689020:CDS | 45.0% | |
| CTAACACGAGCAACATAAGC+AGG | - | chr4_4:55698806-55698825 | None:intergenic | 45.0% | |
| CAAGAAATGGATGGAGCTAG+TGG | + | chr4_4:55698908-55698927 | Msa0689020:CDS | 45.0% | |
| ! | TGAAGGGAGGCGAGATTTTA+GGG | + | chr4_4:55698978-55698997 | Msa0689020:CDS | 45.0% |
| CAGCTGTGAGTGACATGATA+CGG | + | chr4_4:55699029-55699048 | Msa0689020:intron | 45.0% | |
| ! | TTTGAGTTAGGCCTTTGGAG+TGG | + | chr4_4:55699101-55699120 | Msa0689020:intron | 45.0% |
| TGTTGCTCAAAAGGAATCCG+TGG | + | chr4_4:55699189-55699208 | Msa0689020:CDS | 45.0% | |
| !! | TGCAAGAATTGAATGGGCTG+GGG | - | chr4_4:55699428-55699447 | None:intergenic | 45.0% |
| ! | CTGCAAGAATTGAATGGGCT+GGG | - | chr4_4:55699429-55699448 | None:intergenic | 45.0% |
| AGGTTTGCCTTCAGGATATC+TGG | - | chr4_4:55699583-55699602 | None:intergenic | 45.0% | |
| GTAACAAGAGGTTTGCCTTC+AGG | - | chr4_4:55699591-55699610 | None:intergenic | 45.0% | |
| TAGAACGTGGAAGCTGGTAA+GGG | + | chr4_4:55699667-55699686 | Msa0689020:intron | 45.0% | |
| AGATCCCTTGCACAGCATTA+GGG | - | chr4_4:55699712-55699731 | None:intergenic | 45.0% | |
| !! | TGGTGCAAATGGTGCTACTA+AGG | + | chr4_4:55700128-55700147 | Msa0689020:intron | 45.0% |
| !! | CAAATGGTGCTACTAAGGCT+CGG | + | chr4_4:55700133-55700152 | Msa0689020:intron | 45.0% |
| AATATGCATGCATCCTGCTG+GGG | + | chr4_4:55700420-55700439 | Msa0689020:intron | 45.0% | |
| AAAGGAAGATAAACCCCAGC+AGG | - | chr4_4:55700436-55700455 | None:intergenic | 45.0% | |
| ! | TCCTCACTACATCCAGCTTT+TGG | + | chr4_4:55700469-55700488 | Msa0689020:intron | 45.0% |
| ACCAAAAGCTGGATGTAGTG+AGG | - | chr4_4:55700473-55700492 | None:intergenic | 45.0% | |
| ACAAATGTCCTGGTAGAAGG+GGG | - | chr4_4:55700624-55700643 | None:intergenic | 45.0% | |
| CACAAATGTCCTGGTAGAAG+GGG | - | chr4_4:55700625-55700644 | None:intergenic | 45.0% | |
| ! | TCTTTAGGCACTGCAAAACC+TGG | + | chr4_4:55700686-55700705 | Msa0689020:CDS | 45.0% |
| AAGCAGGGTATGATTCAAGC+AGG | + | chr4_4:55700735-55700754 | Msa0689020:CDS | 45.0% | |
| GTTGAGTGAGTCCAGTGATA+TGG | + | chr4_4:55700757-55700776 | Msa0689020:CDS | 45.0% | |
| AAGAAAAAGGGGAAAGCCAC+TGG | + | chr4_4:55700824-55700843 | Msa0689020:CDS | 45.0% | |
| TCTAAGAAAGGCCAGAGAAG+GGG | + | chr4_4:55700908-55700927 | Msa0689020:CDS | 45.0% | |
| ATGTATCCTTACCCCTTCTC+TGG | - | chr4_4:55700922-55700941 | None:intergenic | 45.0% | |
| CAGATTCAAAGCCAGGTTCT+AGG | + | chr4_4:55700954-55700973 | Msa0689020:CDS | 45.0% | |
| TCCCTCAGAAGAATGGATCA+TGG | + | chr4_4:55701015-55701034 | Msa0689020:CDS | 45.0% | |
| CTCCATGATCCATTCTTCTG+AGG | - | chr4_4:55701020-55701039 | None:intergenic | 45.0% | |
| CGAAACGATTCTTAGGCCTT+TGG | + | chr4_4:55701172-55701191 | Msa0689020:CDS | 45.0% | |
| GGCCTACAATAATCGGTACT+TGG | + | chr4_4:55701207-55701226 | Msa0689020:CDS | 45.0% | |
| TTGTTGTGCTCATCCTGCAA+AGG | - | chr4_4:55701730-55701749 | None:intergenic | 45.0% | |
| GAGTCTATTTCGTTTGGTCC+TGG | + | chr4_4:55701790-55701809 | Msa0689020:CDS | 45.0% | |
| ACAATTGCAGCTCTTTCTCC+AGG | - | chr4_4:55701811-55701830 | None:intergenic | 45.0% | |
| GATCAACTGAGATGTTGCCG+AGG | + | chr4_4:55698047-55698066 | Msa0689020:intron | 50.0% | |
| ! | GGCGCAGTTGAATGTTGGTT+TGG | + | chr4_4:55698606-55698625 | Msa0689020:CDS | 50.0% |
| CTCACTATAGTTCCAAGGCG+CGG | - | chr4_4:55698655-55698674 | None:intergenic | 50.0% | |
| TAGGTGAAAGGAAGGCTGGA+AGG | + | chr4_4:55698764-55698783 | Msa0689020:intron | 50.0% | |
| TGTTGCTCGTGTTAGTGCCA+TGG | + | chr4_4:55698811-55698830 | Msa0689020:CDS | 50.0% | |
| ! | AGGTGCTGCAAGGGGAATTA+CGG | + | chr4_4:55698838-55698857 | Msa0689020:CDS | 50.0% |
| AATGGATGGAGCTAGTGGTG+TGG | + | chr4_4:55698913-55698932 | Msa0689020:CDS | 50.0% | |
| ! | GTGAAGGGAGGCGAGATTTT+AGG | + | chr4_4:55698977-55698996 | Msa0689020:CDS | 50.0% |
| CGTATCATGTCACTCACAGC+TGG | - | chr4_4:55699031-55699050 | None:intergenic | 50.0% | |
| CCTGCAAGAATTGAATGGGC+TGG | - | chr4_4:55699430-55699449 | None:intergenic | 50.0% | |
| CCAGCCCATTCAATTCTTGC+AGG | + | chr4_4:55699427-55699446 | Msa0689020:CDS | 50.0% | |
| GATGCTAGATGCTGCTACTG+AGG | + | chr4_4:55699638-55699657 | Msa0689020:CDS | 50.0% | |
| !! | ACTGAGGATGCTCTAGAACG+TGG | + | chr4_4:55699654-55699673 | Msa0689020:CDS | 50.0% |
| !! | ATGCTCTAGAACGTGGAAGC+TGG | + | chr4_4:55699661-55699680 | Msa0689020:CDS | 50.0% |
| CTAGAACGTGGAAGCTGGTA+AGG | + | chr4_4:55699666-55699685 | Msa0689020:intron | 50.0% | |
| ATCCCTTGCACAGCATTAGG+GGG | - | chr4_4:55699710-55699729 | None:intergenic | 50.0% | |
| GATCCCTTGCACAGCATTAG+GGG | - | chr4_4:55699711-55699730 | None:intergenic | 50.0% | |
| GAGATCCCTTGCACAGCATT+AGG | - | chr4_4:55699713-55699732 | None:intergenic | 50.0% | |
| ! | GCTGAGCAGCAGCTTTATGA+AGG | + | chr4_4:55700028-55700047 | Msa0689020:CDS | 50.0% |
| CAAATGTCCTGGTAGAAGGG+GGG | - | chr4_4:55700623-55700642 | None:intergenic | 50.0% | |
| CCATGCGATCACAAATGTCC+TGG | - | chr4_4:55700634-55700653 | None:intergenic | 50.0% | |
| CCAGGACATTTGTGATCGCA+TGG | + | chr4_4:55700631-55700650 | Msa0689020:intron | 50.0% | |
| TCCAGTGATATGGCGAGTGA+TGG | + | chr4_4:55700767-55700786 | Msa0689020:CDS | 50.0% | |
| ACCATCACTCGCCATATCAC+TGG | - | chr4_4:55700771-55700790 | None:intergenic | 50.0% | |
| AGTGATATGGCGAGTGATGG+TGG | + | chr4_4:55700770-55700789 | Msa0689020:CDS | 50.0% | |
| AAGGACAGTAGCAGCTCCTA+TGG | + | chr4_4:55701608-55701627 | Msa0689020:CDS | 50.0% | |
| AAAGAACGGAGTTGACGTGC+AGG | + | chr4_4:55701753-55701772 | Msa0689020:CDS | 50.0% | |
| CTTGCGGCGCAGTTGAATGT+TGG | + | chr4_4:55698601-55698620 | Msa0689020:CDS | 55.0% | |
| !!! | TCTATTTTGGAGCCGCGCCT+TGG | + | chr4_4:55698640-55698659 | Msa0689020:CDS | 55.0% |
| GTGAAAGGAAGGCTGGAAGG+TGG | + | chr4_4:55698767-55698786 | Msa0689020:CDS | 55.0% | |
| CGTGTTAGTGCCATGGTTCG+AGG | + | chr4_4:55698818-55698837 | Msa0689020:CDS | 55.0% | |
| !! | CATGGTTCGAGGTGCTGCAA+GGG | + | chr4_4:55698829-55698848 | Msa0689020:CDS | 55.0% |
| !! | ATGGTTCGAGGTGCTGCAAG+GGG | + | chr4_4:55698830-55698849 | Msa0689020:CDS | 55.0% |
| GCTAGTGGTGTGGCTGTTGA+TGG | + | chr4_4:55698923-55698942 | Msa0689020:CDS | 55.0% | |
| !!! | ATTTTAGGGTCCGTTCGCGC+TGG | + | chr4_4:55698992-55699011 | Msa0689020:CDS | 55.0% |
| CCAATGTACTCCAGCGCGAA+CGG | - | chr4_4:55699005-55699024 | None:intergenic | 55.0% | |
| TTGCACAGCATTAGGGGGTG+GGG | - | chr4_4:55699705-55699724 | None:intergenic | 55.0% | |
| CTTGCACAGCATTAGGGGGT+GGG | - | chr4_4:55699706-55699725 | None:intergenic | 55.0% | |
| CACCCCCTAATGCTGTGCAA+GGG | + | chr4_4:55699705-55699724 | Msa0689020:intron | 55.0% | |
| GAAAGGCCAGAGAAGGGGTA+AGG | + | chr4_4:55700913-55700932 | Msa0689020:CDS | 55.0% | |
| CCTTGCAGCACCTCGAACCA+TGG | - | chr4_4:55698831-55698850 | None:intergenic | 60.0% | |
| !! | CCATGGTTCGAGGTGCTGCA+AGG | + | chr4_4:55698828-55698847 | Msa0689020:CDS | 60.0% |
| CCGTTCGCGCTGGAGTACAT+TGG | + | chr4_4:55699002-55699021 | Msa0689020:CDS | 60.0% | |
| TGCACAGCATTAGGGGGTGG+GGG | - | chr4_4:55699704-55699723 | None:intergenic | 60.0% | |
| CCTTGCACAGCATTAGGGGG+TGG | - | chr4_4:55699707-55699726 | None:intergenic | 60.0% | |
| CCACCCCCTAATGCTGTGCA+AGG | + | chr4_4:55699704-55699723 | Msa0689020:intron | 60.0% | |
| TTCTCTGCCCCCCTTCTACC+AGG | + | chr4_4:55700613-55700632 | Msa0689020:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 55697349 | 55701852 | 55697349 | ID=Msa0689020;Name=Msa0689020 |
| chr4_4 | mRNA | 55697349 | 55701852 | 55697349 | ID=Msa0689020-mRNA-1;Parent=Msa0689020;Name=Msa0689020-mRNA-1;_AED=0.08;_eAED=0.08;_QI=194|1|0.92|1|1|1|13|0|656 |
| chr4_4 | exon | 55697349 | 55697716 | 55697349 | ID=Msa0689020-mRNA-1:exon:14629;Parent=Msa0689020-mRNA-1 |
| chr4_4 | exon | 55698358 | 55698669 | 55698358 | ID=Msa0689020-mRNA-1:exon:14630;Parent=Msa0689020-mRNA-1 |
| chr4_4 | exon | 55698767 | 55699033 | 55698767 | ID=Msa0689020-mRNA-1:exon:14631;Parent=Msa0689020-mRNA-1 |
| chr4_4 | exon | 55699181 | 55699228 | 55699181 | ID=Msa0689020-mRNA-1:exon:14632;Parent=Msa0689020-mRNA-1 |
| chr4_4 | exon | 55699383 | 55699448 | 55699383 | ID=Msa0689020-mRNA-1:exon:14633;Parent=Msa0689020-mRNA-1 |
| chr4_4 | exon | 55699579 | 55699682 | 55699579 | ID=Msa0689020-mRNA-1:exon:14634;Parent=Msa0689020-mRNA-1 |
| chr4_4 | exon | 55699824 | 55699917 | 55699824 | ID=Msa0689020-mRNA-1:exon:14635;Parent=Msa0689020-mRNA-1 |
| chr4_4 | exon | 55699993 | 55700049 | 55699993 | ID=Msa0689020-mRNA-1:exon:14636;Parent=Msa0689020-mRNA-1 |
| chr4_4 | exon | 55700635 | 55701076 | 55700635 | ID=Msa0689020-mRNA-1:exon:14637;Parent=Msa0689020-mRNA-1 |
| chr4_4 | exon | 55701159 | 55701313 | 55701159 | ID=Msa0689020-mRNA-1:exon:14638;Parent=Msa0689020-mRNA-1 |
| chr4_4 | exon | 55701439 | 55701504 | 55701439 | ID=Msa0689020-mRNA-1:exon:14639;Parent=Msa0689020-mRNA-1 |
| chr4_4 | exon | 55701585 | 55701653 | 55701585 | ID=Msa0689020-mRNA-1:exon:14640;Parent=Msa0689020-mRNA-1 |
| chr4_4 | exon | 55701736 | 55701852 | 55701736 | ID=Msa0689020-mRNA-1:exon:14641;Parent=Msa0689020-mRNA-1 |
| chr4_4 | five_prime_UTR | 55697349 | 55697542 | 55697349 | ID=Msa0689020-mRNA-1:five_prime_utr;Parent=Msa0689020-mRNA-1 |
| chr4_4 | CDS | 55697543 | 55697716 | 55697543 | ID=Msa0689020-mRNA-1:cds;Parent=Msa0689020-mRNA-1 |
| chr4_4 | CDS | 55698358 | 55698669 | 55698358 | ID=Msa0689020-mRNA-1:cds;Parent=Msa0689020-mRNA-1 |
| chr4_4 | CDS | 55698767 | 55699033 | 55698767 | ID=Msa0689020-mRNA-1:cds;Parent=Msa0689020-mRNA-1 |
| chr4_4 | CDS | 55699181 | 55699228 | 55699181 | ID=Msa0689020-mRNA-1:cds;Parent=Msa0689020-mRNA-1 |
| chr4_4 | CDS | 55699383 | 55699448 | 55699383 | ID=Msa0689020-mRNA-1:cds;Parent=Msa0689020-mRNA-1 |
| chr4_4 | CDS | 55699579 | 55699682 | 55699579 | ID=Msa0689020-mRNA-1:cds;Parent=Msa0689020-mRNA-1 |
| chr4_4 | CDS | 55699824 | 55699917 | 55699824 | ID=Msa0689020-mRNA-1:cds;Parent=Msa0689020-mRNA-1 |
| chr4_4 | CDS | 55699993 | 55700049 | 55699993 | ID=Msa0689020-mRNA-1:cds;Parent=Msa0689020-mRNA-1 |
| chr4_4 | CDS | 55700635 | 55701076 | 55700635 | ID=Msa0689020-mRNA-1:cds;Parent=Msa0689020-mRNA-1 |
| chr4_4 | CDS | 55701159 | 55701313 | 55701159 | ID=Msa0689020-mRNA-1:cds;Parent=Msa0689020-mRNA-1 |
| chr4_4 | CDS | 55701439 | 55701504 | 55701439 | ID=Msa0689020-mRNA-1:cds;Parent=Msa0689020-mRNA-1 |
| chr4_4 | CDS | 55701585 | 55701653 | 55701585 | ID=Msa0689020-mRNA-1:cds;Parent=Msa0689020-mRNA-1 |
| chr4_4 | CDS | 55701736 | 55701852 | 55701736 | ID=Msa0689020-mRNA-1:cds;Parent=Msa0689020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
