AlfalfaGEDB | Msa0691670

M. sativa cultivar zhongmu-4 / Msa0691670

KEGG: -
GO: -
PFAM: PF13964.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0691670	AES89806.1	60.714	364	123	7	1	358	1	350	9.45e-145	423

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0691670	sp\|Q9FZF3\|FB43_ARATH	24.791	359	217	15	2	340	25	350	9.63e-16	81.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0691670	G7JCN7	60.714	364	123	7	1	358	1	350	4.51e-145	423

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0691670	Msa1023050	0.803663	3.130637e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0691670	MtrunA17_Chr4g0041401	60.714	364	123	7	1	358	24	373	1.42e-148	424
Msa0691670	MtrunA17_Chr1g0155881	47.978	371	160	11	1	357	30	381	5.66e-101	303
Msa0691670	MtrunA17_Chr1g0147551	47.493	379	163	14	2	357	13	378	7.64e-95	287
Msa0691670	MtrunA17_Chr1g0155091	47.185	373	165	15	1	357	13	369	6.46e-91	277
Msa0691670	MtrunA17_Chr1g0173631	43.164	373	187	11	2	357	12	376	3.59e-86	265
Msa0691670	MtrunA17_Chr1g0164311	42.092	411	167	20	3	357	5	400	1.07e-73	234
Msa0691670	MtrunA17_Chr1g0155891	48.165	218	95	6	150	357	8	217	3.00e-57	186
Msa0691670	MtrunA17_Chr1g0147001	39.057	297	147	14	80	357	28	309	1.17e-41	147
Msa0691670	MtrunA17_Chr8g0384071	68.000	100	27	1	7	106	11	105	1.43e-35	125
Msa0691670	MtrunA17_Chr1g0154881	41.875	160	84	4	184	341	9	161	6.81e-32	117

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0691670	AT1G47765.1	24.791	359	217	15	2	340	25	350	9.79e-17	81.3
Msa0691670	AT1G12870.1	25.680	331	188	16	2	302	32	334	3.32e-16	79.7
Msa0691670	AT1G11270.1	27.843	255	154	10	3	244	35	272	4.00e-16	78.6
Msa0691670	AT1G11270.2	27.843	255	154	10	3	244	35	272	4.00e-16	78.6
Msa0691670	AT1G30790.1	24.051	316	188	10	6	292	12	304	3.99e-14	73.6
Msa0691670	AT2G40925.1	23.014	365	229	14	6	339	30	373	6.31e-14	72.8
Msa0691670	AT1G47790.1	25.000	300	184	12	6	292	28	299	6.58e-14	72.8
Msa0691670	AT4G12560.1	25.857	321	193	16	6	300	7	308	2.80e-13	70.9
Msa0691670	AT4G12560.2	25.857	321	193	16	6	300	7	308	2.80e-13	70.9
Msa0691670	AT4G12560.3	25.857	321	193	16	6	300	7	308	2.80e-13	70.9

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Find 69 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTATGGTAGTTGCAA+CGG	0.585015	4_4:-59960114	Msa0691670:CDS
AACAAAGATTTGATGAGGAT+TGG	0.402919	4_4:+59960159	None:intergenic
AATACAACCGTTACGGAGTG+AGG	0.565225	4_4:+59959990	None:intergenic
AATGAATTTAGGAGAAGATT+TGG	0.260801	4_4:-59960388	Msa0691670:CDS
AATGAGGGTGCTGAAATCCT+TGG	0.569360	4_4:-59959463	Msa0691670:CDS
ACAAGAGTGTTGTATCTTGA+AGG	0.407653	4_4:+59959781	None:intergenic
ACACATTTGAATCTCATCAA+TGG	0.483025	4_4:+59960333	None:intergenic
ACATGAGAGAAGCTTGATGC+TGG	0.454156	4_4:+59960200	None:intergenic
ACGGAAATATGAGATAAACA+CGG	0.767662	4_4:+59959645	None:intergenic
ACGGTAGCATCAGGTAATTC+TGG	0.332951	4_4:+59959664	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACACATTTGAATCTCATCAA+TGG	+	chr4_4:59959390-59959409	None:intergenic	30.0%
TCAAATGTGTTCAAAGATCA+TGG	-	chr4_4:59959400-59959419	Msa0691670:CDS	30.0%
GTTCAATGATAAGAAGACTA+GGG	+	chr4_4:59959482-59959501	None:intergenic	30.0%
TGTTCAATGATAAGAAGACT+AGG	+	chr4_4:59959483-59959502	None:intergenic	30.0%
AACAAAGATTTGATGAGGAT+TGG	+	chr4_4:59959564-59959583	None:intergenic	30.0%
GTAGCAAGAATCAAAATGTA+TGG	-	chr4_4:59959594-59959613	Msa0691670:CDS	30.0%
AAAATGTATGGTAGTTGCAA+CGG	-	chr4_4:59959606-59959625	Msa0691670:CDS	30.0%
AGATACAACACTCTTGTTAA+CGG	-	chr4_4:59959945-59959964	Msa0691670:CDS	30.0%
TTGTTAACGGTGTTTATCAT+TGG	-	chr4_4:59959958-59959977	Msa0691670:CDS	30.0%
ACGGAAATATGAGATAAACA+CGG	+	chr4_4:59960078-59960097	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	59959333	59960409	59959333	ID=Msa0691670;Name=Msa0691670
chr4_4	mRNA	59959333	59960409	59959333	ID=Msa0691670-mRNA-1;Parent=Msa0691670;Name=Msa0691670-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|358
chr4_4	exon	59959333	59960409	59959333	ID=Msa0691670-mRNA-1:exon:16345;Parent=Msa0691670-mRNA-1
chr4_4	CDS	59959333	59960409	59959333	ID=Msa0691670-mRNA-1:cds;Parent=Msa0691670-mRNA-1

Gene Sequence

>Msa0691670

ATGAATTTAGGAGAAGATTTGGAGACAGAGATCTTGTTGCGGCTTCCAGCAAAACCATTGATGAGATTCAAATGTGTTCAAAGATCATGGAACAGTCTCATCAAAACTCCCTGCTTTGTGAGCAGAAGAAGTAAGTTGCAACGAAACCCTAGTCTTCTTATCATTGAACAGTCCAAATTGAAAAGACCCAGCATCAAGCTTCTCTCATGTGACGGTGACAACGAGAAACCAATCCTCATCAAATCTTTGTTTCCCAAAGGCGTAGCAAGAATCAAAATGTATGGTAGTTGCAACGGTGTTTTTTGTCTCAAAGGTATTTACTCAGGCAAAACTTGTCACGATCAATTGATTGCTTGGAACCCAACAACTAATGAGGTTCACCTTATTCCCAGTGCTCCCTCACTCCGTAACGGTTGTATTGATAAATCATTTTATGGTTTTGGTGCTGTTAATGGTGACTTCAAACTTGTCAAACTCAGTATCTCTGATAACAATGAGATGATGAAAATGATTTATCTTACATCGGCAGAAGTTTATAATCTAAGCACTAAATCATGGACACCTATCCTCGATTTTCCTCCTCGTATTATGGTCCAACATCGACAACCTTCAAGATACAACACTCTTGTTAACGGTGTTTATCATTGGATTACGAGCTCTTACTATACTACAAAAATTCTTTGCTTTGACTTTCACAATAACAAGTTTCAGCAACTTGAAGCCCCAGAATTACCTGATGCTACCGTGTTTATCTCATATTTCCGTGATGACCTCATTGAGATAAAGGGCTCTCTTGGTTATGTTGTGGAGTATAGGAATTCTAGTATGGTTTGGTTGGAAATATGGATTATGGAAAAAAACGGGTGGGACAAAAAGTATAACTTTGACACAACTCAGTCAAAGTTTCGTATTTATGGTATTTGGAATGAGGGTGCTGAAATCCTTGGAGGAAATGTTGAGCAGCGGAAGCTCACGTCATACGATCATCAAGGGAACGCACTTCGCCAATTTCAAATTAAAATTTCAAATTTTAGGATTTATGAGTATGTGCCAAGCATAGCTCTATTGTCAAAGTAG

Protein sequence

>Msa0691670

MNLGEDLETEILLRLPAKPLMRFKCVQRSWNSLIKTPCFVSRRSKLQRNPSLLIIEQSKLKRPSIKLLSCDGDNEKPILIKSLFPKGVARIKMYGSCNGVFCLKGIYSGKTCHDQLIAWNPTTNEVHLIPSAPSLRNGCIDKSFYGFGAVNGDFKLVKLSISDNNEMMKMIYLTSAEVYNLSTKSWTPILDFPPRIMVQHRQPSRYNTLVNGVYHWITSSYYTTKILCFDFHNNKFQQLEAPELPDATVFISYFRDDLIEIKGSLGYVVEYRNSSMVWLEIWIMEKNGWDKKYNFDTTQSKFRIYGIWNEGAEILGGNVEQRKLTSYDHQGNALRQFQIKISNFRIYEYVPSIALLSK*