Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692610 | XP_013458677.1 | 92.562 | 242 | 2 | 2 | 1 | 241 | 1 | 227 | 1.63e-157 | 446 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692610 | sp|Q75LU8|CNBL3_ORYSJ | 83.402 | 241 | 24 | 2 | 1 | 241 | 1 | 225 | 1.02e-144 | 406 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692610 | G7ZZV7 | 92.562 | 242 | 2 | 2 | 1 | 241 | 1 | 227 | 7.77e-158 | 446 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0692610 | Msa1353380 | 0.852872 | 3.471151e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692610 | MtrunA17_Chr4g0076551 | 92.562 | 242 | 2 | 2 | 1 | 241 | 1 | 227 | 1.50e-161 | 446 |
| Msa0692610 | MtrunA17_Chr3g0102821 | 85.062 | 241 | 21 | 1 | 1 | 241 | 1 | 226 | 2.52e-147 | 410 |
| Msa0692610 | MtrunA17_Chr5g0446931 | 83.817 | 241 | 24 | 1 | 1 | 241 | 1 | 226 | 5.60e-147 | 409 |
| Msa0692610 | MtrunA17_Chr2g0290781 | 60.163 | 246 | 78 | 3 | 1 | 241 | 1 | 231 | 3.02e-103 | 299 |
| Msa0692610 | MtrunA17_Chr2g0290751 | 62.667 | 225 | 66 | 2 | 1 | 222 | 1 | 210 | 5.55e-101 | 292 |
| Msa0692610 | MtrunA17_Chr2g0290761 | 62.222 | 225 | 67 | 2 | 1 | 222 | 1 | 210 | 1.16e-98 | 286 |
| Msa0692610 | MtrunA17_Chr2g0290771 | 67.677 | 198 | 49 | 1 | 43 | 240 | 8 | 190 | 2.52e-95 | 277 |
| Msa0692610 | MtrunA17_Chr4g0055421 | 56.889 | 225 | 82 | 1 | 16 | 240 | 1 | 210 | 1.13e-88 | 261 |
| Msa0692610 | MtrunA17_Chr1g0151621 | 60.488 | 205 | 66 | 1 | 36 | 240 | 60 | 249 | 6.25e-83 | 248 |
| Msa0692610 | MtrunA17_Chr8g0388331 | 52.381 | 210 | 85 | 1 | 31 | 240 | 16 | 210 | 1.34e-76 | 230 |
| Msa0692610 | MtrunA17_Chr8g0346911 | 51.442 | 208 | 86 | 1 | 34 | 241 | 42 | 234 | 3.55e-72 | 220 |
| Msa0692610 | MtrunA17_Chr8g0341941 | 54.146 | 205 | 79 | 1 | 36 | 240 | 66 | 255 | 6.39e-72 | 220 |
| Msa0692610 | MtrunA17_Chr4g0063121 | 38.308 | 201 | 89 | 2 | 40 | 240 | 2 | 167 | 1.57e-43 | 146 |
| Msa0692610 | MtrunA17_Chr3g0126801 | 59.048 | 105 | 43 | 0 | 137 | 241 | 1 | 105 | 6.29e-43 | 141 |
| Msa0692610 | MtrunA17_Chr3g0126811 | 54.386 | 114 | 51 | 1 | 18 | 131 | 5 | 117 | 1.38e-40 | 135 |
| Msa0692610 | MtrunA17_Chr5g0399921 | 59.000 | 100 | 41 | 0 | 31 | 130 | 15 | 114 | 2.27e-35 | 122 |
| Msa0692610 | MtrunA17_Chr8g0388321 | 48.062 | 129 | 45 | 2 | 31 | 159 | 58 | 164 | 1.03e-30 | 112 |
| Msa0692610 | MtrunA17_Chr8g0388311 | 51.250 | 80 | 39 | 0 | 162 | 241 | 1 | 80 | 8.72e-23 | 88.6 |
| Msa0692610 | MtrunA17_Chr5g0399931 | 50.649 | 77 | 37 | 1 | 162 | 238 | 1 | 76 | 7.64e-18 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692610 | AT5G55990.1 | 82.573 | 241 | 27 | 1 | 1 | 241 | 1 | 226 | 4.01e-142 | 397 |
| Msa0692610 | AT5G55990.2 | 82.573 | 241 | 27 | 1 | 1 | 241 | 1 | 226 | 4.01e-142 | 397 |
| Msa0692610 | AT4G26570.1 | 81.328 | 241 | 30 | 1 | 1 | 241 | 1 | 226 | 2.91e-141 | 395 |
| Msa0692610 | AT4G26570.2 | 80.000 | 245 | 30 | 2 | 1 | 241 | 1 | 230 | 5.56e-139 | 389 |
| Msa0692610 | AT4G16350.2 | 67.220 | 241 | 57 | 3 | 1 | 241 | 2 | 220 | 8.73e-111 | 318 |
| Msa0692610 | AT4G16350.1 | 67.220 | 241 | 57 | 3 | 1 | 241 | 2 | 220 | 8.73e-111 | 318 |
| Msa0692610 | AT5G47100.1 | 59.111 | 225 | 77 | 1 | 16 | 240 | 1 | 210 | 3.53e-91 | 268 |
| Msa0692610 | AT4G17615.4 | 57.333 | 225 | 81 | 1 | 16 | 240 | 1 | 210 | 2.37e-89 | 263 |
| Msa0692610 | AT4G17615.1 | 57.333 | 225 | 81 | 1 | 16 | 240 | 1 | 210 | 2.37e-89 | 263 |
| Msa0692610 | AT4G17615.5 | 57.333 | 225 | 81 | 1 | 16 | 240 | 1 | 210 | 2.37e-89 | 263 |
| Msa0692610 | AT4G26560.1 | 64.734 | 207 | 45 | 3 | 48 | 241 | 23 | 214 | 2.93e-88 | 260 |
| Msa0692610 | AT5G24270.4 | 56.731 | 208 | 75 | 1 | 26 | 233 | 15 | 207 | 9.68e-84 | 249 |
| Msa0692610 | AT5G24270.1 | 56.731 | 208 | 75 | 1 | 26 | 233 | 15 | 207 | 9.68e-84 | 249 |
| Msa0692610 | AT5G24270.2 | 56.731 | 208 | 75 | 1 | 26 | 233 | 15 | 207 | 9.68e-84 | 249 |
| Msa0692610 | AT4G33000.2 | 56.897 | 232 | 82 | 3 | 11 | 240 | 31 | 246 | 3.45e-83 | 248 |
| Msa0692610 | AT4G33000.1 | 56.897 | 232 | 82 | 3 | 11 | 240 | 41 | 256 | 5.45e-83 | 248 |
| Msa0692610 | AT5G24270.5 | 57.216 | 194 | 68 | 1 | 40 | 233 | 4 | 182 | 2.01e-78 | 234 |
| Msa0692610 | AT4G17615.3 | 54.717 | 212 | 81 | 1 | 16 | 227 | 1 | 197 | 1.05e-76 | 232 |
| Msa0692610 | AT1G64480.2 | 49.339 | 227 | 100 | 1 | 14 | 240 | 3 | 214 | 5.51e-76 | 229 |
| Msa0692610 | AT1G64480.3 | 49.339 | 227 | 100 | 1 | 14 | 240 | 3 | 214 | 5.51e-76 | 229 |
| Msa0692610 | AT1G64480.1 | 49.339 | 227 | 100 | 1 | 14 | 240 | 3 | 214 | 5.51e-76 | 229 |
| Msa0692610 | AT1G64480.4 | 49.048 | 210 | 92 | 1 | 14 | 223 | 3 | 197 | 1.82e-68 | 209 |
| Msa0692610 | AT4G17615.2 | 56.977 | 172 | 59 | 1 | 69 | 240 | 12 | 168 | 8.39e-67 | 204 |
| Msa0692610 | AT5G24270.3 | 53.846 | 169 | 63 | 1 | 65 | 233 | 7 | 160 | 8.01e-62 | 192 |
| Msa0692610 | AT5G47100.2 | 54.651 | 172 | 63 | 1 | 16 | 187 | 1 | 157 | 7.20e-60 | 187 |
| Msa0692610 | AT4G01420.1 | 46.500 | 200 | 90 | 2 | 35 | 233 | 19 | 202 | 1.66e-57 | 182 |
| Msa0692610 | AT4G33000.4 | 54.144 | 181 | 65 | 3 | 8 | 186 | 28 | 192 | 6.62e-54 | 172 |
| Msa0692610 | AT4G33000.6 | 54.144 | 181 | 65 | 3 | 8 | 186 | 28 | 192 | 6.62e-54 | 172 |
| Msa0692610 | AT4G33000.5 | 54.444 | 180 | 64 | 3 | 8 | 185 | 28 | 191 | 1.12e-53 | 172 |
| Msa0692610 | AT4G01420.2 | 46.316 | 190 | 85 | 2 | 35 | 223 | 19 | 192 | 4.35e-53 | 170 |
| Msa0692610 | AT4G33000.3 | 60.000 | 115 | 43 | 2 | 11 | 123 | 31 | 144 | 4.23e-37 | 128 |
Find 110 sgRNAs with CRISPR-Local
Find 357 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAATTGCAATTGCAAATT+AGG | 0.135898 | 4_4:+61252937 | None:intergenic |
| TTCCTTCATTTGAGAATAAA+AGG | 0.140171 | 4_4:-61248490 | Msa0692610:three_prime_UTR |
| AATCAGATATGTTGTATATT+TGG | 0.151988 | 4_4:-61248230 | Msa0692610:three_prime_UTR |
| CCAGATAGAATAGGTGTTTC+AGG | 0.171578 | 4_4:-61248463 | Msa0692610:three_prime_UTR |
| TAGAACTTTGTTTCTTGTTT+TGG | 0.194928 | 4_4:-61248557 | Msa0692610:three_prime_UTR |
| CGCAGGGTTATTTGGTTGAT+TGG | 0.272448 | 4_4:-61252966 | Msa0692610:five_prime_UTR |
| CTTACAAGAGCAAAAGAAAA+TGG | 0.300800 | 4_4:+61248295 | None:intergenic |
| AGGGCATTCGCAGGGTTATT+TGG | 0.304508 | 4_4:-61252974 | Msa0692610:five_prime_UTR |
| TATGTTTCACTTGTGAATAC+TGG | 0.316101 | 4_4:-61248639 | Msa0692610:three_prime_UTR |
| CTCTCTTTCTTTCTGATGAA+AGG | 0.324626 | 4_4:-61252884 | Msa0692610:intron |
| CCTGAAACACCTATTCTATC+TGG | 0.331459 | 4_4:+61248463 | None:intergenic |
| CATTGAATCTTCTCATCAAT+TGG | 0.337898 | 4_4:+61251961 | None:intergenic |
| GATTCGTTAAATCAACCTAT+TGG | 0.354642 | 4_4:-61252503 | Msa0692610:CDS |
| GATCATTGAGGTTTGTAGAT+TGG | 0.356248 | 4_4:-61248535 | Msa0692610:three_prime_UTR |
| AGGTTTGTAGATTGGACAAA+TGG | 0.362022 | 4_4:-61248527 | Msa0692610:three_prime_UTR |
| AGGAGAGCTTATTTGCAGAT+AGG | 0.369093 | 4_4:-61252197 | Msa0692610:CDS |
| GAGCCCATGACCTGAGTTGA+TGG | 0.371472 | 4_4:-61248349 | Msa0692610:three_prime_UTR |
| ACAACATATCTGATTTGTTA+TGG | 0.375341 | 4_4:+61248238 | None:intergenic |
| TTCTCATCAATTGGTGCGTT+GGG | 0.382752 | 4_4:+61251970 | None:intergenic |
| TAGTAATGCATAAACTTGTT+GGG | 0.382953 | 4_4:-61251828 | Msa0692610:CDS |
| ATGATTTGGTCTAACTGAAA+TGG | 0.385287 | 4_4:-61253112 | Msa0692610:five_prime_UTR |
| GCTGTTTGAGATCATACAAT+TGG | 0.386165 | 4_4:+61251773 | None:intergenic |
| CTAACTGAAATGGACAAGTA+TGG | 0.391065 | 4_4:-61253102 | Msa0692610:five_prime_UTR |
| TGATGATGGACTAATTAATA+AGG | 0.392383 | 4_4:-61252381 | Msa0692610:intron |
| AGAAAATGGAAGGGAAATGT+TGG | 0.404679 | 4_4:+61248309 | None:intergenic |
| CCATACGGAGGGAGGGAGGG+AGG | 0.407545 | 4_4:-61252994 | Msa0692610:five_prime_UTR |
| TTTATGAATGTCTAAAATCA+AGG | 0.412566 | 4_4:-61248150 | Msa0692610:three_prime_UTR |
| GTAGTAATGCATAAACTTGT+TGG | 0.431668 | 4_4:-61251829 | Msa0692610:intron |
| GTGGCCACTCTAGCTGAATC+TGG | 0.434726 | 4_4:-61250066 | Msa0692610:CDS |
| CATTAGCACTTTGGATATGT+TGG | 0.437065 | 4_4:-61248433 | Msa0692610:three_prime_UTR |
| TCTGGAAGAGGAAGAGATAA+TGG | 0.446819 | 4_4:-61252585 | Msa0692610:exon |
| GGAGAGCTTATTTGCAGATA+GGG | 0.447151 | 4_4:-61252196 | Msa0692610:intron |
| CCTCCCTCCCTCCCTCCGTA+TGG | 0.448366 | 4_4:+61252994 | None:intergenic |
| AAAGTCTAGTGCAATGGCTT+GGG | 0.451220 | 4_4:-61248392 | Msa0692610:three_prime_UTR |
| CTTCTCATCAATTGGTGCGT+TGG | 0.454509 | 4_4:+61251969 | None:intergenic |
| GGGTTATTTGGTTGATTGGT+TGG | 0.455523 | 4_4:-61252962 | Msa0692610:five_prime_UTR |
| CTCCCTCCCTCCCTCCGTAT+GGG | 0.463516 | 4_4:+61252995 | None:intergenic |
| TATGCTAATACAGACATTTG+AGG | 0.463715 | 4_4:-61249403 | Msa0692610:intron |
| AAGAGAGAGGGTAATATTGT+GGG | 0.466125 | 4_4:+61252900 | None:intergenic |
| AAAGAGAGAGGGTAATATTG+TGG | 0.466320 | 4_4:+61252899 | None:intergenic |
| TCCCTCCCTCCGTATGGGAA+TGG | 0.471690 | 4_4:+61253000 | None:intergenic |
| GTCTCTCTTGCAAGAAGTTG+TGG | 0.471933 | 4_4:+61252470 | None:intergenic |
| TTATGTGTAGGTAAAACAAA+TGG | 0.480528 | 4_4:-61250091 | Msa0692610:intron |
| AAAAGTCTAGTGCAATGGCT+TGG | 0.483521 | 4_4:-61248393 | Msa0692610:three_prime_UTR |
| GGTTTGTAGATTGGACAAAT+GGG | 0.487395 | 4_4:-61248526 | Msa0692610:three_prime_UTR |
| TTTGTTGAAGGATGCAGTCC+GGG | 0.487420 | 4_4:-61248613 | Msa0692610:three_prime_UTR |
| GAGGGAGGGAGGGCATTCGC+AGG | 0.488103 | 4_4:-61252983 | Msa0692610:five_prime_UTR |
| CACGTGTAATAAATAATGAT+TGG | 0.488526 | 4_4:-61253069 | Msa0692610:five_prime_UTR |
| GAAAATGGAAGGGAAATGTT+GGG | 0.490932 | 4_4:+61248310 | None:intergenic |
| TGTTTGATACAAAGCACAAT+GGG | 0.493205 | 4_4:-61252038 | Msa0692610:CDS |
| ATGTTTCACTTGTGAATACT+GGG | 0.494013 | 4_4:-61248638 | Msa0692610:three_prime_UTR |
| TAGGCTCATGTAGCTGCCTC+AGG | 0.498515 | 4_4:+61248704 | None:intergenic |
| AAAGGGAAACCAGATAGAAT+AGG | 0.512971 | 4_4:-61248472 | Msa0692610:three_prime_UTR |
| GAAGCTGATACAAAACATGA+TGG | 0.519793 | 4_4:-61249381 | Msa0692610:CDS |
| TCCTTCATTTGAGAATAAAA+GGG | 0.522994 | 4_4:-61248489 | Msa0692610:three_prime_UTR |
| TTTCTGGTCTTGAATACCAA+TGG | 0.529019 | 4_4:-61248664 | Msa0692610:three_prime_UTR |
| AGCAGTGCAGTCATTGATGA+TGG | 0.530790 | 4_4:-61252395 | Msa0692610:CDS |
| GCTGCCATCAACTCAGGTCA+TGG | 0.533005 | 4_4:+61248345 | None:intergenic |
| CAAGAGCAAAAGAAAATGGA+AGG | 0.535512 | 4_4:+61248299 | None:intergenic |
| AATACTTTCGACCACGTCAT+CGG | 0.537540 | 4_4:+61250032 | None:intergenic |
| GGAAGATTGACAAGGAAGAA+TGG | 0.543897 | 4_4:-61249359 | Msa0692610:CDS |
| TTCCCATACGGAGGGAGGGA+GGG | 0.544577 | 4_4:-61252997 | Msa0692610:five_prime_UTR |
| CATACGGAGGGAGGGAGGGA+GGG | 0.544727 | 4_4:-61252993 | Msa0692610:five_prime_UTR |
| AAAAGTGACATGGATGATGT+AGG | 0.546445 | 4_4:+61248685 | None:intergenic |
| AACAAGATCTAGATCTATCC+CGG | 0.552594 | 4_4:+61248595 | None:intergenic |
| CCCTCCATTCCATTCCCATA+CGG | 0.564602 | 4_4:-61253009 | Msa0692610:five_prime_UTR |
| ATGGCTTGGGCAAGCTGTGA+AGG | 0.565486 | 4_4:-61248379 | Msa0692610:three_prime_UTR |
| GCAGAAGCTGCCATCAACTC+AGG | 0.565765 | 4_4:+61248339 | None:intergenic |
| CTGCCATCAACTCAGGTCAT+GGG | 0.566514 | 4_4:+61248346 | None:intergenic |
| TTCATCAGAAAGAAAGAGAG+AGG | 0.566683 | 4_4:+61252887 | None:intergenic |
| AGTAATGCATAAACTTGTTG+GGG | 0.567052 | 4_4:-61251827 | Msa0692610:CDS |
| ACAAGTGAAACATAAACCAT+TGG | 0.567165 | 4_4:+61248648 | None:intergenic |
| TCCATTCCCATACGGAGGGA+GGG | 0.570301 | 4_4:-61253001 | Msa0692610:five_prime_UTR |
| AGGGAGGGAGGGCATTCGCA+GGG | 0.572226 | 4_4:-61252982 | Msa0692610:five_prime_UTR |
| GGGATGGATGCCGCAAGACA+AGG | 0.573752 | 4_4:+61249331 | None:intergenic |
| TTCCATTCCCATACGGAGGG+AGG | 0.576796 | 4_4:-61253002 | Msa0692610:five_prime_UTR |
| AGGAGGTGCTAAGCTAAGCA+AGG | 0.580019 | 4_4:-61253037 | Msa0692610:five_prime_UTR |
| CATACCAGATTCAGCTAGAG+TGG | 0.583380 | 4_4:+61250062 | None:intergenic |
| ATAATGGTGCAGTGCCTAGA+CGG | 0.586253 | 4_4:-61252569 | Msa0692610:CDS |
| ACGACAGGAAGAATTTCAGT+TGG | 0.588073 | 4_4:-61252241 | Msa0692610:intron |
| CTGTCAAAAGTCTAGTGCAA+TGG | 0.589378 | 4_4:-61248398 | Msa0692610:three_prime_UTR |
| ATTGTTCAAGTCAAACAAGA+AGG | 0.597720 | 4_4:-61252217 | Msa0692610:CDS |
| AAGCTGATACAAAACATGAT+GGG | 0.605429 | 4_4:-61249380 | Msa0692610:CDS |
| TCCGTATGGGAATGGAATGG+AGG | 0.609508 | 4_4:+61253008 | None:intergenic |
| ATTGGAAAGAAACTGCAAGA+AGG | 0.610768 | 4_4:+61251791 | None:intergenic |
| TCCATTCCATTCCCATACGG+AGG | 0.611421 | 4_4:-61253006 | Msa0692610:five_prime_UTR |
| ATTCCCATACGGAGGGAGGG+AGG | 0.613590 | 4_4:-61252998 | Msa0692610:five_prime_UTR |
| CCCTCCGTATGGGAATGGAA+TGG | 0.613837 | 4_4:+61253005 | None:intergenic |
| TTGTTTGATACAAAGCACAA+TGG | 0.615195 | 4_4:-61252039 | Msa0692610:CDS |
| CCGTATGGGAATGGAATGGA+GGG | 0.616096 | 4_4:+61253009 | None:intergenic |
| ACAGATGCTTTATTCCGTCT+AGG | 0.621229 | 4_4:+61252555 | None:intergenic |
| CCATTCCATTCCCATACGGA+GGG | 0.624120 | 4_4:-61253005 | Msa0692610:five_prime_UTR |
| TTGTATGATCTCAAACAGCA+AGG | 0.625245 | 4_4:-61251769 | Msa0692610:CDS |
| TCATCAGAAAGAAAGAGAGA+GGG | 0.632219 | 4_4:+61252888 | None:intergenic |
| TGTGTAGGTAAAACAAATGG+TGG | 0.637094 | 4_4:-61250088 | Msa0692610:intron |
| GGAGGTGCTAAGCTAAGCAA+GGG | 0.647245 | 4_4:-61253036 | Msa0692610:five_prime_UTR |
| AAGAGCAAAAGAAAATGGAA+GGG | 0.648083 | 4_4:+61248300 | None:intergenic |
| AACAAAACTAGGAAATGTGG+TGG | 0.655041 | 4_4:+61248749 | None:intergenic |
| TATGAATCTTTCCGATGACG+TGG | 0.662006 | 4_4:-61250043 | Msa0692610:CDS |
| TGGACAAGTATGGAGTGAAG+AGG | 0.665142 | 4_4:-61253092 | Msa0692610:five_prime_UTR |
| AATGGCGAAACCTTGTCTTG+CGG | 0.669293 | 4_4:-61249341 | Msa0692610:CDS |
| GTAGGTAAAACAAATGGTGG+TGG | 0.669780 | 4_4:-61250085 | Msa0692610:intron |
| AATCTCACTTACACTAAACA+CGG | 0.670140 | 4_4:+61252448 | None:intergenic |
| ATGAATGTCTAAAATCAAGG+TGG | 0.670685 | 4_4:-61248147 | None:intergenic |
| GGTCGAAAGTATTATCGACA+AGG | 0.681005 | 4_4:-61250022 | Msa0692610:intron |
| TCGCAAGTTGATGATACCTG+AGG | 0.697660 | 4_4:-61248720 | Msa0692610:exon |
| ACATGATGGGAAGATTGACA+AGG | 0.700088 | 4_4:-61249367 | Msa0692610:CDS |
| ATAATGATTGGTGAACAGTG+AGG | 0.720539 | 4_4:-61253057 | Msa0692610:five_prime_UTR |
| ATGATTGGTGAACAGTGAGG+AGG | 0.744175 | 4_4:-61253054 | Msa0692610:five_prime_UTR |
| GAGGTGCTAAGCTAAGCAAG+GGG | 0.753565 | 4_4:-61253035 | Msa0692610:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATTAACTATGATATA+TGG | + | chr4_4:61251641-61251660 | None:intergenic | 10.0% |
| !! | ATAATTAAAAAATACAGTTT+CGG | + | chr4_4:61252229-61252248 | None:intergenic | 10.0% |
| !! | AAATAGAATAAAATATGTAT+TGG | + | chr4_4:61252446-61252465 | None:intergenic | 10.0% |
| !!! | ATTTTGATGAATGAAAATAA+GGG | + | chr4_4:61248458-61248477 | None:intergenic | 15.0% |
| !! | AAATATAGTAATAATCAATC+AGG | + | chr4_4:61248507-61248526 | None:intergenic | 15.0% |
| !! | TATAAAATGAATCATAAACA+TGG | + | chr4_4:61249210-61249229 | None:intergenic | 15.0% |
| !!! | TTCATTTTATATACTTATGT+AGG | - | chr4_4:61249219-61249238 | Msa0692610:intron | 15.0% |
| !!! | ATTTACTCAACAATTTTATT+TGG | - | chr4_4:61249365-61249384 | Msa0692610:CDS | 15.0% |
| !!! | AATTTTATTTGGATATTGAA+TGG | - | chr4_4:61249376-61249395 | Msa0692610:CDS | 15.0% |
| !!! | TGTATTAACTTGAATAAATA+TGG | - | chr4_4:61249578-61249597 | Msa0692610:intron | 15.0% |
| !!! | AAAATTTTCTGTTAAATCAT+CGG | + | chr4_4:61250361-61250380 | None:intergenic | 15.0% |
| !! | ATATCATAGTTAATTATTAG+TGG | - | chr4_4:61251642-61251661 | Msa0692610:intron | 15.0% |
| !! | AGATTAAAATTTGAAGATTA+TGG | + | chr4_4:61252116-61252135 | None:intergenic | 15.0% |
| !! | TTTAATCTCTACTATTAATA+AGG | - | chr4_4:61252128-61252147 | Msa0692610:intron | 15.0% |
| !! | TAATTAAAAAATACAGTTTC+GGG | + | chr4_4:61252228-61252247 | None:intergenic | 15.0% |
| !!! | GATTTTGATGAATGAAAATA+AGG | + | chr4_4:61248459-61248478 | None:intergenic | 20.0% |
| !!! | AATCAATCAGGATTTAAAAT+TGG | + | chr4_4:61248495-61248514 | None:intergenic | 20.0% |
| !!! | CGTATACATTTTTTTTTACA+TGG | - | chr4_4:61248571-61248590 | Msa0692610:three_prime_UTR | 20.0% |
| !! | TAATCGTCTATTTATTGTTA+TGG | - | chr4_4:61249437-61249456 | Msa0692610:intron | 20.0% |
| !! | AATCGTCTATTTATTGTTAT+GGG | - | chr4_4:61249438-61249457 | Msa0692610:intron | 20.0% |
| !! | ATCACTACTTTATATTGTTT+AGG | - | chr4_4:61249624-61249643 | Msa0692610:intron | 20.0% |
| !!! | TTGAGTTTTAATAGATTGAT+TGG | - | chr4_4:61249807-61249826 | Msa0692610:intron | 20.0% |
| !! | TGAAACTGTATATTATTTCA+TGG | + | chr4_4:61250109-61250128 | None:intergenic | 20.0% |
| !! | ATAGAAAAATACAGCTTAAA+AGG | + | chr4_4:61250723-61250742 | None:intergenic | 20.0% |
| !! | TTTCTATAGATTGAACTTTA+AGG | - | chr4_4:61250736-61250755 | Msa0692610:intron | 20.0% |
| !! | TTCTATAGATTGAACTTTAA+GGG | - | chr4_4:61250737-61250756 | Msa0692610:intron | 20.0% |
| !! | CATAAATAAAAAGCAGAAAA+AGG | + | chr4_4:61251389-61251408 | None:intergenic | 20.0% |
| !!! | TGTTATTTTAGTTTTTTTGC+TGG | - | chr4_4:61251407-61251426 | Msa0692610:intron | 20.0% |
| !! | TACTTAAAATTTGGAAACAA+AGG | + | chr4_4:61251591-61251610 | None:intergenic | 20.0% |
| !! | TCAAATTAGTAATTAGTAAC+AGG | + | chr4_4:61252026-61252045 | None:intergenic | 20.0% |
| !! | AAATTATTTCCTAACATGTT+AGG | - | chr4_4:61252071-61252090 | Msa0692610:intron | 20.0% |
| !! | TACTATTAATAAGGAGAATA+AGG | - | chr4_4:61252137-61252156 | Msa0692610:intron | 20.0% |
| !!! | GTTTTAACAAACATTTGAAA+TGG | + | chr4_4:61252206-61252225 | None:intergenic | 20.0% |
| !! | AATCAGATATGTTGTATATT+TGG | - | chr4_4:61253059-61253078 | Msa0692610:five_prime_UTR | 20.0% |
| !!! | TTGTAATTATCATTTTTGCA+TGG | - | chr4_4:61253082-61253101 | Msa0692610:five_prime_UTR | 20.0% |
| !!! | TGTAATTATCATTTTTGCAT+GGG | - | chr4_4:61253083-61253102 | Msa0692610:five_prime_UTR | 20.0% |
| ! | CACGTGTAATAAATAATGAT+TGG | - | chr4_4:61248220-61248239 | Msa0692610:three_prime_UTR | 25.0% |
| ! | AAAAAAAAATGTATACGTCC+AGG | + | chr4_4:61248568-61248587 | None:intergenic | 25.0% |
| ! | GTTAATTCTTGAAACATTTG+TGG | - | chr4_4:61248655-61248674 | Msa0692610:three_prime_UTR | 25.0% |
| !!! | TGATGATGGACTAATTAATA+AGG | - | chr4_4:61248908-61248927 | Msa0692610:intron | 25.0% |
| !!! | TTTTTTTCATTTCCACCTTA+TGG | - | chr4_4:61249143-61249162 | Msa0692610:intron | 25.0% |
| !!! | TATTGTTTTTTCCTTCCATA+AGG | + | chr4_4:61249161-61249180 | None:intergenic | 25.0% |
| ! | ACATGGCAAATAAATTGATA+AGG | + | chr4_4:61249193-61249212 | None:intergenic | 25.0% |
| ! | TATTTGGATATTGAATGGAA+AGG | - | chr4_4:61249381-61249400 | Msa0692610:CDS | 25.0% |
| ! | ATTTGGATATTGAATGGAAA+GGG | - | chr4_4:61249382-61249401 | Msa0692610:CDS | 25.0% |
| !! | TAGTAATGCATAAACTTGTT+GGG | - | chr4_4:61249461-61249480 | Msa0692610:intron | 25.0% |
| ! | TATAAAGTAGTGATCTAATG+TGG | + | chr4_4:61249618-61249637 | None:intergenic | 25.0% |
| !! | AATATTGTTGAGAGTTTGTT+AGG | - | chr4_4:61249971-61249990 | Msa0692610:intron | 25.0% |
| ! | ATTAGCATGTATTTGATACT+AGG | - | chr4_4:61250516-61250535 | Msa0692610:intron | 25.0% |
| ! | AAGGAGAAATAAAAAACGAA+AGG | + | chr4_4:61250967-61250986 | None:intergenic | 25.0% |
| ! | TCATCAATGCATATAAATCT+AGG | + | chr4_4:61251169-61251188 | None:intergenic | 25.0% |
| ! | TTTACCTACACATAAAAACA+AGG | + | chr4_4:61251193-61251212 | None:intergenic | 25.0% |
| ! | TTATGTGTAGGTAAAACAAA+TGG | - | chr4_4:61251198-61251217 | Msa0692610:intron | 25.0% |
| !!! | TGATAATGGTCATATAGATT+TGG | + | chr4_4:61251325-61251344 | None:intergenic | 25.0% |
| ! | GTACATTTGAATCATGTTAT+AGG | - | chr4_4:61251352-61251371 | Msa0692610:intron | 25.0% |
| ! | AAGGGCAAATACTTAAAATT+TGG | + | chr4_4:61251600-61251619 | None:intergenic | 25.0% |
| !!! | AAGAGTCATATTTTTCAGAA+GGG | + | chr4_4:61251981-61252000 | None:intergenic | 25.0% |
| ! | TATTAATAAGGAGAATAAGG+TGG | - | chr4_4:61252140-61252159 | Msa0692610:intron | 25.0% |
| ! | ATTAATAAGGAGAATAAGGT+GGG | - | chr4_4:61252141-61252160 | Msa0692610:intron | 25.0% |
| !!! | CATAGGAGTTTTGTTTAAAA+CGG | - | chr4_4:61252363-61252382 | Msa0692610:intron | 25.0% |
| ! | AAAAACAAAACTAGGAAATG+TGG | + | chr4_4:61252546-61252565 | None:intergenic | 25.0% |
| !!! | TAGAACTTTGTTTCTTGTTT+TGG | - | chr4_4:61252732-61252751 | Msa0692610:intron | 25.0% |
| ! | TTCCTTCATTTGAGAATAAA+AGG | - | chr4_4:61252799-61252818 | Msa0692610:intron | 25.0% |
| ! | TCCTTCATTTGAGAATAAAA+GGG | - | chr4_4:61252800-61252819 | Msa0692610:intron | 25.0% |
| !!! | ACAACATATCTGATTTGTTA+TGG | + | chr4_4:61253054-61253073 | None:intergenic | 25.0% |
| !! | ATGATTTGGTCTAACTGAAA+TGG | - | chr4_4:61248177-61248196 | Msa0692610:three_prime_UTR | 30.0% |
| TGCAATTGCAATTGCAAATT+AGG | + | chr4_4:61248355-61248374 | None:intergenic | 30.0% | |
| TTGATGAATGAAAATAAGGG+AGG | + | chr4_4:61248455-61248474 | None:intergenic | 30.0% | |
| TGCAGTAATAACTGAAGAAT+TGG | + | chr4_4:61248536-61248555 | None:intergenic | 30.0% | |
| TGAAACATTTGTGGAATTAC+AGG | - | chr4_4:61248664-61248683 | Msa0692610:three_prime_UTR | 30.0% | |
| GATTCGTTAAATCAACCTAT+TGG | - | chr4_4:61248786-61248805 | Msa0692610:intron | 30.0% | |
| ! | TGTGGATTTTGTAAACCAAT+AGG | + | chr4_4:61248804-61248823 | None:intergenic | 30.0% |
| AATCTCACTTACACTAAACA+CGG | + | chr4_4:61248844-61248863 | None:intergenic | 30.0% | |
| TCAGCTATGATAGAACATTA+TGG | - | chr4_4:61248931-61248950 | Msa0692610:intron | 30.0% | |
| GTTGTTGTATACTTGTATGA+TGG | - | chr4_4:61249011-61249030 | Msa0692610:intron | 30.0% | |
| !!! | GTTTTCTTATTTTACACGAC+AGG | - | chr4_4:61249033-61249052 | Msa0692610:intron | 30.0% |
| ATTGTTCAAGTCAAACAAGA+AGG | - | chr4_4:61249072-61249091 | Msa0692610:intron | 30.0% | |
| TTGTTTGATACAAAGCACAA+TGG | - | chr4_4:61249250-61249269 | Msa0692610:intron | 30.0% | |
| TGTTTGATACAAAGCACAAT+GGG | - | chr4_4:61249251-61249270 | Msa0692610:intron | 30.0% | |
| CATTGAATCTTCTCATCAAT+TGG | + | chr4_4:61249331-61249350 | None:intergenic | 30.0% | |
| GTAGTAATGCATAAACTTGT+TGG | - | chr4_4:61249460-61249479 | Msa0692610:intron | 30.0% | |
| !! | AGTAATGCATAAACTTGTTG+GGG | - | chr4_4:61249462-61249481 | Msa0692610:intron | 30.0% |
| AACTGCAAGAAGGAAAAATT+GGG | + | chr4_4:61249491-61249510 | None:intergenic | 30.0% | |
| AAACTGCAAGAAGGAAAAAT+TGG | + | chr4_4:61249492-61249511 | None:intergenic | 30.0% | |
| AAAACAAATTACGCAAGTGA+AGG | + | chr4_4:61249701-61249720 | None:intergenic | 30.0% | |
| ! | GTGTATTTTCAAATTGCTTG+TGG | - | chr4_4:61249747-61249766 | Msa0692610:intron | 30.0% |
| TTAAAACTCAAGAGCTAGTA+TGG | + | chr4_4:61249798-61249817 | None:intergenic | 30.0% | |
| GAAACAATTATAAGAGGGAT+AGG | - | chr4_4:61249932-61249951 | Msa0692610:intron | 30.0% | |
| TCATATATGATAACCTGTTC+AGG | - | chr4_4:61250207-61250226 | Msa0692610:intron | 30.0% | |
| !! | CTTTTGTTTAATTCCTGAAC+AGG | + | chr4_4:61250223-61250242 | None:intergenic | 30.0% |
| AATCACTATGAACTTCATCT+AGG | + | chr4_4:61250328-61250347 | None:intergenic | 30.0% | |
| TACAACGTGTTTATGGTATT+AGG | - | chr4_4:61250455-61250474 | Msa0692610:intron | 30.0% | |
| GTAATACAAGTAAAAGCCTA+TGG | - | chr4_4:61250668-61250687 | Msa0692610:intron | 30.0% | |
| TGAGAGAGAAGAAAATGTTT+GGG | + | chr4_4:61250763-61250782 | None:intergenic | 30.0% | |
| TTGAGAGAGAAGAAAATGTT+TGG | + | chr4_4:61250764-61250783 | None:intergenic | 30.0% | |
| ! | ACCATAAAGTAAGTGTTTTC+CGG | + | chr4_4:61250895-61250914 | None:intergenic | 30.0% |
| !!! | TGATCCTTGTTTTTATGTGT+AGG | - | chr4_4:61251186-61251205 | Msa0692610:intron | 30.0% |
| TATATGACCATTATCAGACT+AGG | - | chr4_4:61251329-61251348 | Msa0692610:intron | 30.0% | |
| ATATGACCATTATCAGACTA+GGG | - | chr4_4:61251330-61251349 | Msa0692610:intron | 30.0% | |
| !!! | TAGTTTTTTTGCTGGTTACT+TGG | - | chr4_4:61251415-61251434 | Msa0692610:intron | 30.0% |
| ! | AGTCTCTAAAAGCAATCTTA+TGG | - | chr4_4:61251480-61251499 | Msa0692610:intron | 30.0% |
| GAAGCATGTAAACAAACTAT+AGG | - | chr4_4:61251502-61251521 | Msa0692610:intron | 30.0% | |
| TACTGAATTTCAAACAATGC+AGG | + | chr4_4:61251539-61251558 | None:intergenic | 30.0% | |
| ! | TTAAGTATTTGCCCTTTTGT+TGG | - | chr4_4:61251604-61251623 | Msa0692610:intron | 30.0% |
| GTTATTCTTGTGAACTTCAT+AGG | - | chr4_4:61251759-61251778 | Msa0692610:CDS | 30.0% | |
| !!! | TTGACGTAGTTTTATGTGTA+TGG | - | chr4_4:61251782-61251801 | Msa0692610:CDS | 30.0% |
| TATGCTAATACAGACATTTG+AGG | - | chr4_4:61251886-61251905 | Msa0692610:intron | 30.0% | |
| AAGCTGATACAAAACATGAT+GGG | - | chr4_4:61251909-61251928 | Msa0692610:intron | 30.0% | |
| !! | GAAGAGTCATATTTTTCAGA+AGG | + | chr4_4:61251982-61252001 | None:intergenic | 30.0% |
| !!! | ATTTTGAAATTCTCTCACCA+GGG | - | chr4_4:61252045-61252064 | Msa0692610:CDS | 30.0% |
| TTAGGAAATAATTTACTCCC+TGG | + | chr4_4:61252065-61252084 | None:intergenic | 30.0% | |
| CAAACAAATCCTAACATGTT+AGG | + | chr4_4:61252083-61252102 | None:intergenic | 30.0% | |
| TGAATGGGGATAAATATGAA+GGG | + | chr4_4:61252277-61252296 | None:intergenic | 30.0% | |
| ATGAATGGGGATAAATATGA+AGG | + | chr4_4:61252278-61252297 | None:intergenic | 30.0% | |
| ATACCATTGTGTTCATTCAT+AGG | - | chr4_4:61252346-61252365 | Msa0692610:intron | 30.0% | |
| ! | TCTGATTTGAACTGTTTATC+TGG | - | chr4_4:61252506-61252525 | Msa0692610:CDS | 30.0% |
| TATGTTTCACTTGTGAATAC+TGG | - | chr4_4:61252650-61252669 | Msa0692610:intron | 30.0% | |
| ATGTTTCACTTGTGAATACT+GGG | - | chr4_4:61252651-61252670 | Msa0692610:intron | 30.0% | |
| !!! | TTTCTTGTTTTGGATCATTG+AGG | - | chr4_4:61252742-61252761 | Msa0692610:intron | 30.0% |
| ! | TCCCTTTTATTCTCAAATGA+AGG | + | chr4_4:61252804-61252823 | None:intergenic | 30.0% |
| AAGAGCAAAAGAAAATGGAA+GGG | + | chr4_4:61252992-61253011 | None:intergenic | 30.0% | |
| CTTACAAGAGCAAAAGAAAA+TGG | + | chr4_4:61252997-61253016 | None:intergenic | 30.0% | |
| CTAACTGAAATGGACAAGTA+TGG | - | chr4_4:61248187-61248206 | Msa0692610:three_prime_UTR | 35.0% | |
| ATAATGATTGGTGAACAGTG+AGG | - | chr4_4:61248232-61248251 | Msa0692610:three_prime_UTR | 35.0% | |
| AAGAGAGAGGGTAATATTGT+GGG | + | chr4_4:61248392-61248411 | None:intergenic | 35.0% | |
| AAAGAGAGAGGGTAATATTG+TGG | + | chr4_4:61248393-61248412 | None:intergenic | 35.0% | |
| TCATCAGAAAGAAAGAGAGA+GGG | + | chr4_4:61248404-61248423 | None:intergenic | 35.0% | |
| TTCATCAGAAAGAAAGAGAG+AGG | + | chr4_4:61248405-61248424 | None:intergenic | 35.0% | |
| CTCTCTTTCTTTCTGATGAA+AGG | - | chr4_4:61248405-61248424 | Msa0692610:three_prime_UTR | 35.0% | |
| CTTTCTTTCTGATGAAAGGT+TGG | - | chr4_4:61248409-61248428 | Msa0692610:three_prime_UTR | 35.0% | |
| ATTACTGCATTGTTTGTACC+TGG | - | chr4_4:61248547-61248566 | Msa0692610:three_prime_UTR | 35.0% | |
| CATTTGTGGAATTACAGGTA+TGG | - | chr4_4:61248669-61248688 | Msa0692610:three_prime_UTR | 35.0% | |
| TTTCATTTCCACCTTATGGA+AGG | - | chr4_4:61249147-61249166 | Msa0692610:intron | 35.0% | |
| !!! | TGTTTTTTCCTTCCATAAGG+TGG | + | chr4_4:61249158-61249177 | None:intergenic | 35.0% |
| ATTGGAAAGAAACTGCAAGA+AGG | + | chr4_4:61249501-61249520 | None:intergenic | 35.0% | |
| ! | GCTGTTTGAGATCATACAAT+TGG | + | chr4_4:61249519-61249538 | None:intergenic | 35.0% |
| TTGTATGATCTCAAACAGCA+AGG | - | chr4_4:61249520-61249539 | Msa0692610:intron | 35.0% | |
| !!! | GCAAGGTTTTATTGAAAGAC+AGG | - | chr4_4:61249537-61249556 | Msa0692610:intron | 35.0% |
| !!! | AGGTTTTATTGAAAGACAGG+AGG | - | chr4_4:61249540-61249559 | Msa0692610:intron | 35.0% |
| TAGATGAATCAATCCCATGT+TGG | + | chr4_4:61249661-61249680 | None:intergenic | 35.0% | |
| ! | GCTAGTATGGTTTTCATCTA+CGG | + | chr4_4:61249785-61249804 | None:intergenic | 35.0% |
| ACCGATAGGATACTAGATTT+GGG | - | chr4_4:61249847-61249866 | Msa0692610:intron | 35.0% | |
| CCACATTCAACACATCAATA+GGG | + | chr4_4:61249879-61249898 | None:intergenic | 35.0% | |
| TCCACATTCAACACATCAAT+AGG | + | chr4_4:61249880-61249899 | None:intergenic | 35.0% | |
| AGGAGGGAAACAATTATAAG+AGG | - | chr4_4:61249926-61249945 | Msa0692610:intron | 35.0% | |
| GGAGGGAAACAATTATAAGA+GGG | - | chr4_4:61249927-61249946 | Msa0692610:intron | 35.0% | |
| GGTGGAATAACAGAAAAGAA+AGG | + | chr4_4:61250058-61250077 | None:intergenic | 35.0% | |
| ! | GATTTTACAGTTTCCATCGA+AGG | - | chr4_4:61250135-61250154 | Msa0692610:intron | 35.0% |
| ACTGCAATACAACGTGTTTA+TGG | - | chr4_4:61250448-61250467 | Msa0692610:intron | 35.0% | |
| TTCCAGATAACATTGAGTAG+CGG | - | chr4_4:61250546-61250565 | Msa0692610:intron | 35.0% | |
| ! | TACACCACTATCCCAATTTT+GGG | + | chr4_4:61250577-61250596 | None:intergenic | 35.0% |
| TAAAAGCCTATGGTACTCAA+AGG | - | chr4_4:61250678-61250697 | Msa0692610:intron | 35.0% | |
| ATCTAGGTAGTCAATAGTTG+TGG | + | chr4_4:61251153-61251172 | None:intergenic | 35.0% | |
| TGTGTAGGTAAAACAAATGG+TGG | - | chr4_4:61251201-61251220 | Msa0692610:intron | 35.0% | |
| AATGTACCCTAGTCTGATAA+TGG | + | chr4_4:61251339-61251358 | None:intergenic | 35.0% | |
| ACAAACATGCACCAACAAAA+GGG | + | chr4_4:61251618-61251637 | None:intergenic | 35.0% | |
| TGTGCTATCATAATCTTCTC+TGG | - | chr4_4:61251842-61251861 | Msa0692610:intron | 35.0% | |
| GAAGCTGATACAAAACATGA+TGG | - | chr4_4:61251908-61251927 | Msa0692610:intron | 35.0% | |
| !! | GTCATATTTTTCAGAAGGGA+TGG | + | chr4_4:61251977-61251996 | None:intergenic | 35.0% |
| !!! | GATTTTGAAATTCTCTCACC+AGG | - | chr4_4:61252044-61252063 | Msa0692610:CDS | 35.0% |
| GGGATAAATATGAAGGGAAA+AGG | + | chr4_4:61252271-61252290 | None:intergenic | 35.0% | |
| CATGTATGTATAGCTACATG+AGG | + | chr4_4:61252311-61252330 | None:intergenic | 35.0% | |
| ACTCCTATGAATGAACACAA+TGG | + | chr4_4:61252352-61252371 | None:intergenic | 35.0% | |
| !!! | AGGAGTTTTGTTTAAAACGG+TGG | - | chr4_4:61252366-61252385 | Msa0692610:intron | 35.0% |
| !! | GTAATTGCATTGGTGCTAAA+AGG | + | chr4_4:61252392-61252411 | None:intergenic | 35.0% |
| CAATCAGAAGGTAATTGCAT+TGG | + | chr4_4:61252402-61252421 | None:intergenic | 35.0% | |
| AACAAAACTAGGAAATGTGG+TGG | + | chr4_4:61252543-61252562 | None:intergenic | 35.0% | |
| TGCGAGTGAAAAACAAAACT+AGG | + | chr4_4:61252554-61252573 | None:intergenic | 35.0% | |
| AAAAGTGACATGGATGATGT+AGG | + | chr4_4:61252607-61252626 | None:intergenic | 35.0% | |
| !!! | ATCATCCATGTCACTTTTTC+TGG | - | chr4_4:61252609-61252628 | Msa0692610:intron | 35.0% |
| !! | TTTCTGGTCTTGAATACCAA+TGG | - | chr4_4:61252625-61252644 | Msa0692610:intron | 35.0% |
| ! | GAATACTGGGATTTTGTTGA+AGG | - | chr4_4:61252664-61252683 | Msa0692610:intron | 35.0% |
| AACAAGATCTAGATCTATCC+CGG | + | chr4_4:61252697-61252716 | None:intergenic | 35.0% | |
| GATCATTGAGGTTTGTAGAT+TGG | - | chr4_4:61252754-61252773 | Msa0692610:intron | 35.0% | |
| AGGTTTGTAGATTGGACAAA+TGG | - | chr4_4:61252762-61252781 | Msa0692610:intron | 35.0% | |
| GGTTTGTAGATTGGACAAAT+GGG | - | chr4_4:61252763-61252782 | Msa0692610:intron | 35.0% | |
| AAAGGGAAACCAGATAGAAT+AGG | - | chr4_4:61252817-61252836 | Msa0692610:intron | 35.0% | |
| CATTAGCACTTTGGATATGT+TGG | - | chr4_4:61252856-61252875 | Msa0692610:intron | 35.0% | |
| GAAAATGGAAGGGAAATGTT+GGG | + | chr4_4:61252982-61253001 | None:intergenic | 35.0% | |
| AGAAAATGGAAGGGAAATGT+TGG | + | chr4_4:61252983-61253002 | None:intergenic | 35.0% | |
| CAAGAGCAAAAGAAAATGGA+AGG | + | chr4_4:61252993-61253012 | None:intergenic | 35.0% | |
| ! | ATTTTTGCATGGGTGTCTAT+TGG | - | chr4_4:61253093-61253112 | Msa0692610:five_prime_UTR | 35.0% |
| GGGTTATTTGGTTGATTGGT+TGG | - | chr4_4:61248327-61248346 | Msa0692610:three_prime_UTR | 40.0% | |
| !!! | GTATGGAGTGTTTTGACATC+TGG | - | chr4_4:61248686-61248705 | Msa0692610:three_prime_UTR | 40.0% |
| !!! | AGTGTTTTGACATCTGGAAG+AGG | - | chr4_4:61248692-61248711 | Msa0692610:three_prime_UTR | 40.0% |
| TCTGGAAGAGGAAGAGATAA+TGG | - | chr4_4:61248704-61248723 | Msa0692610:exon | 40.0% | |
| ! | ACAGATGCTTTATTCCGTCT+AGG | + | chr4_4:61248737-61248756 | None:intergenic | 40.0% |
| ! | CTTATCCCATTGATTGGGTT+CGG | + | chr4_4:61248976-61248995 | None:intergenic | 40.0% |
| ! | CAAGCCTTATCCCATTGATT+GGG | + | chr4_4:61248981-61249000 | None:intergenic | 40.0% |
| ACGACAGGAAGAATTTCAGT+TGG | - | chr4_4:61249048-61249067 | Msa0692610:intron | 40.0% | |
| AGGAGAGCTTATTTGCAGAT+AGG | - | chr4_4:61249092-61249111 | Msa0692610:intron | 40.0% | |
| GGAGAGCTTATTTGCAGATA+GGG | - | chr4_4:61249093-61249112 | Msa0692610:intron | 40.0% | |
| AGCTTATTTGCAGATAGGGT+GGG | - | chr4_4:61249097-61249116 | Msa0692610:intron | 40.0% | |
| TTCTCATCAATTGGTGCGTT+GGG | + | chr4_4:61249322-61249341 | None:intergenic | 40.0% | |
| TGAATGGAAAGGGATGTACT+AGG | - | chr4_4:61249392-61249411 | Msa0692610:CDS | 40.0% | |
| AGTAGTGATCTAATGTGGTG+TGG | + | chr4_4:61249613-61249632 | None:intergenic | 40.0% | |
| ! | TCAATCCCATGTTGGTTATG+TGG | + | chr4_4:61249653-61249672 | None:intergenic | 40.0% |
| CTCTTTGTCTAAAGACCGAT+AGG | - | chr4_4:61249833-61249852 | Msa0692610:intron | 40.0% | |
| GACCGATAGGATACTAGATT+TGG | - | chr4_4:61249846-61249865 | Msa0692610:intron | 40.0% | |
| GCCCAAATCTAGTATCCTAT+CGG | + | chr4_4:61249851-61249870 | None:intergenic | 40.0% | |
| CCCTATTGATGTGTTGAATG+TGG | - | chr4_4:61249876-61249895 | Msa0692610:intron | 40.0% | |
| TTATAAGAGGGATAGGAGAG+AGG | - | chr4_4:61249939-61249958 | Msa0692610:intron | 40.0% | |
| ATGGATAGTGATGAGCTCAA+AGG | + | chr4_4:61250090-61250109 | None:intergenic | 40.0% | |
| ! | ACACCACTATCCCAATTTTG+GGG | + | chr4_4:61250576-61250595 | None:intergenic | 40.0% |
| ! | GTACACCACTATCCCAATTT+TGG | + | chr4_4:61250578-61250597 | None:intergenic | 40.0% |
| !! | AAGGCGTCGTGAAAAATGTA+GGG | + | chr4_4:61250704-61250723 | None:intergenic | 40.0% |
| !! | AAAGGCGTCGTGAAAAATGT+AGG | + | chr4_4:61250705-61250724 | None:intergenic | 40.0% |
| CTCAAACTTGTAGACCTAAC+AGG | - | chr4_4:61250779-61250798 | Msa0692610:intron | 40.0% | |
| GCCGGAAAACACTTACTTTA+TGG | - | chr4_4:61250891-61250910 | Msa0692610:intron | 40.0% | |
| GTTGCTGTAAAACCCAGATT+TGG | - | chr4_4:61250922-61250941 | Msa0692610:intron | 40.0% | |
| ! | CGTGATTTGTGACCAAATCT+GGG | + | chr4_4:61250937-61250956 | None:intergenic | 40.0% |
| ! | TCGTGATTTGTGACCAAATC+TGG | + | chr4_4:61250938-61250957 | None:intergenic | 40.0% |
| TATTTCTCCTTCCTCTCCTT+TGG | - | chr4_4:61250976-61250995 | Msa0692610:intron | 40.0% | |
| !! | GTGTATGATGTGCCACTTTA+GGG | + | chr4_4:61251007-61251026 | None:intergenic | 40.0% |
| !! | TGTGTATGATGTGCCACTTT+AGG | + | chr4_4:61251008-61251027 | None:intergenic | 40.0% |
| TGTGGATAGATCCGTTATCA+TGG | + | chr4_4:61251135-61251154 | None:intergenic | 40.0% | |
| GTAGGTAAAACAAATGGTGG+TGG | - | chr4_4:61251204-61251223 | Msa0692610:intron | 40.0% | |
| TATGAATCTTTCCGATGACG+TGG | - | chr4_4:61251246-61251265 | Msa0692610:intron | 40.0% | |
| AATACTTTCGACCACGTCAT+CGG | + | chr4_4:61251260-61251279 | None:intergenic | 40.0% | |
| !! | GGTCGAAAGTATTATCGACA+AGG | - | chr4_4:61251267-61251286 | Msa0692610:intron | 40.0% |
| GACAAACATGCACCAACAAA+AGG | + | chr4_4:61251619-61251638 | None:intergenic | 40.0% | |
| GGAACTCTTATGTGTACTCT+AGG | - | chr4_4:61251663-61251682 | Msa0692610:intron | 40.0% | |
| TAAGCTTCCGCAAAATCTCT+CGG | - | chr4_4:61251710-61251729 | Msa0692610:intron | 40.0% | |
| ! | TAACTAGCCGAGAGATTTTG+CGG | + | chr4_4:61251720-61251739 | None:intergenic | 40.0% |
| ACAAGAATAACGCTGGAGAA+AGG | + | chr4_4:61251750-61251769 | None:intergenic | 40.0% | |
| GAAGTTCACAAGAATAACGC+TGG | + | chr4_4:61251757-61251776 | None:intergenic | 40.0% | |
| !! | GGAGTTGATAATGACGACAT+TGG | - | chr4_4:61251803-61251822 | Msa0692610:CDS | 40.0% |
| ! | ACATGATGGGAAGATTGACA+AGG | - | chr4_4:61251922-61251941 | Msa0692610:intron | 40.0% |
| GGAAGATTGACAAGGAAGAA+TGG | - | chr4_4:61251930-61251949 | Msa0692610:intron | 40.0% | |
| AGGAGTGATGAGAATGAATG+GGG | + | chr4_4:61252291-61252310 | None:intergenic | 40.0% | |
| GAGGAGTGATGAGAATGAAT+GGG | + | chr4_4:61252292-61252311 | None:intergenic | 40.0% | |
| TGAGGAGTGATGAGAATGAA+TGG | + | chr4_4:61252293-61252312 | None:intergenic | 40.0% | |
| CCAGGACAAAATCAATCAGA+AGG | + | chr4_4:61252414-61252433 | None:intergenic | 40.0% | |
| !! | CCTTCTGATTGATTTTGTCC+TGG | - | chr4_4:61252411-61252430 | Msa0692610:CDS | 40.0% |
| !! | CTGATTGATTTTGTCCTGGA+TGG | - | chr4_4:61252415-61252434 | Msa0692610:CDS | 40.0% |
| ATGTATTGGAGATACCATCC+AGG | + | chr4_4:61252432-61252451 | None:intergenic | 40.0% | |
| CAAGACCAGAAAAAGTGACA+TGG | + | chr4_4:61252617-61252636 | None:intergenic | 40.0% | |
| ! | TTTTGTTGAAGGATGCAGTC+CGG | - | chr4_4:61252675-61252694 | Msa0692610:intron | 40.0% |
| CCTGAAACACCTATTCTATC+TGG | + | chr4_4:61252829-61252848 | None:intergenic | 40.0% | |
| CCAGATAGAATAGGTGTTTC+AGG | - | chr4_4:61252826-61252845 | Msa0692610:intron | 40.0% | |
| ! | GGTTTTCAGCATTAGCACTT+TGG | - | chr4_4:61252847-61252866 | Msa0692610:intron | 40.0% |
| CTGTCAAAAGTCTAGTGCAA+TGG | - | chr4_4:61252891-61252910 | Msa0692610:five_prime_UTR | 40.0% | |
| AAAAGTCTAGTGCAATGGCT+TGG | - | chr4_4:61252896-61252915 | Msa0692610:five_prime_UTR | 40.0% | |
| AAAGTCTAGTGCAATGGCTT+GGG | - | chr4_4:61252897-61252916 | Msa0692610:five_prime_UTR | 40.0% | |
| ! | GAAGGGAAATGTTGGGTTTT+AGG | + | chr4_4:61252975-61252994 | None:intergenic | 40.0% |
| TGGACAAGTATGGAGTGAAG+AGG | - | chr4_4:61248197-61248216 | Msa0692610:three_prime_UTR | 45.0% | |
| ATGATTGGTGAACAGTGAGG+AGG | - | chr4_4:61248235-61248254 | Msa0692610:three_prime_UTR | 45.0% | |
| CGCAGGGTTATTTGGTTGAT+TGG | - | chr4_4:61248323-61248342 | Msa0692610:three_prime_UTR | 45.0% | |
| ATAATGGTGCAGTGCCTAGA+CGG | - | chr4_4:61248720-61248739 | Msa0692610:exon | 45.0% | |
| GTCTCTCTTGCAAGAAGTTG+TGG | + | chr4_4:61248822-61248841 | None:intergenic | 45.0% | |
| AGCAGTGCAGTCATTGATGA+TGG | - | chr4_4:61248894-61248913 | Msa0692610:intron | 45.0% | |
| ATTGATTGGGTTCGGCTACA+TGG | + | chr4_4:61248968-61248987 | None:intergenic | 45.0% | |
| ATGTAGCCGAACCCAATCAA+TGG | - | chr4_4:61248967-61248986 | Msa0692610:intron | 45.0% | |
| TGTAGCCGAACCCAATCAAT+GGG | - | chr4_4:61248968-61248987 | Msa0692610:intron | 45.0% | |
| CGAACCCAATCAATGGGATA+AGG | - | chr4_4:61248974-61248993 | Msa0692610:intron | 45.0% | |
| ! | CCAAGCCTTATCCCATTGAT+TGG | + | chr4_4:61248982-61249001 | None:intergenic | 45.0% |
| CCAATCAATGGGATAAGGCT+TGG | - | chr4_4:61248979-61248998 | Msa0692610:intron | 45.0% | |
| GAGCTTATTTGCAGATAGGG+TGG | - | chr4_4:61249096-61249115 | Msa0692610:intron | 45.0% | |
| CTTCTCATCAATTGGTGCGT+TGG | + | chr4_4:61249323-61249342 | None:intergenic | 45.0% | |
| GAAAGGGATGTACTAGGTAG+AGG | - | chr4_4:61249398-61249417 | Msa0692610:intron | 45.0% | |
| AGGTCACCACATAACCAACA+TGG | - | chr4_4:61249644-61249663 | Msa0692610:intron | 45.0% | |
| GGTCACCACATAACCAACAT+GGG | - | chr4_4:61249645-61249664 | Msa0692610:intron | 45.0% | |
| TACACTTGCAGAAGTTGCAG+TGG | + | chr4_4:61249732-61249751 | None:intergenic | 45.0% | |
| ! | ATGGTTTTCATCTACGGCCT+TGG | + | chr4_4:61249779-61249798 | None:intergenic | 45.0% |
| GAATGTGGAGAGTAGTGACA+CGG | - | chr4_4:61249891-61249910 | Msa0692610:intron | 45.0% | |
| TGACACGGCACAATTCAGTT+AGG | - | chr4_4:61249906-61249925 | Msa0692610:intron | 45.0% | |
| ACGGCACAATTCAGTTAGGA+GGG | - | chr4_4:61249910-61249929 | Msa0692610:intron | 45.0% | |
| GTTAGGAGAGATGTTCTCTC+TGG | - | chr4_4:61249988-61250007 | Msa0692610:intron | 45.0% | |
| AGAGATGTTCTCTCTGGTCT+AGG | - | chr4_4:61249994-61250013 | Msa0692610:intron | 45.0% | |
| TGAGCTCAAAGGCTCTACAA+TGG | + | chr4_4:61250079-61250098 | None:intergenic | 45.0% | |
| AAGGGTTTACAGTAGGTCAC+TGG | - | chr4_4:61250165-61250184 | Msa0692610:intron | 45.0% | |
| AGGGTTTACAGTAGGTCACT+GGG | - | chr4_4:61250166-61250185 | Msa0692610:intron | 45.0% | |
| TTAGGCTATAGCGACGCTAT+CGG | - | chr4_4:61250473-61250492 | Msa0692610:intron | 45.0% | |
| ! | TCGGTCGCTATTGACTACTA+TGG | - | chr4_4:61250492-61250511 | Msa0692610:intron | 45.0% |
| AGCCGCTACTCAATGTTATC+TGG | + | chr4_4:61250551-61250570 | None:intergenic | 45.0% | |
| AGATAACATTGAGTAGCGGC+TGG | - | chr4_4:61250550-61250569 | Msa0692610:intron | 45.0% | |
| ! | GATAGTGGTGTACCACATTG+CGG | - | chr4_4:61250585-61250604 | Msa0692610:intron | 45.0% |
| ATAGTGGTGTACCACATTGC+GGG | - | chr4_4:61250586-61250605 | Msa0692610:intron | 45.0% | |
| ! | AATTAGCTGCTGGTTGTGTG+CGG | + | chr4_4:61250838-61250857 | None:intergenic | 45.0% |
| TCGAGATAGAAGCTTCAAGC+CGG | - | chr4_4:61250873-61250892 | Msa0692610:intron | 45.0% | |
| CACTTACTTTATGGTCCCTC+AGG | - | chr4_4:61250900-61250919 | Msa0692610:intron | 45.0% | |
| ! | TGGGTTTTACAGCAACCTGA+GGG | + | chr4_4:61250918-61250937 | None:intergenic | 45.0% |
| TTAGGGTCAAACCAAAGGAG+AGG | + | chr4_4:61250990-61251009 | None:intergenic | 45.0% | |
| !! | CCACTTTAGGGTCAAACCAA+AGG | + | chr4_4:61250995-61251014 | None:intergenic | 45.0% |
| !! | CCTTTGGTTTGACCCTAAAG+TGG | - | chr4_4:61250992-61251011 | Msa0692610:intron | 45.0% |
| GTGTGTCACATATAGTGGTG+CGG | + | chr4_4:61251070-61251089 | None:intergenic | 45.0% | |
| !! | ACTCGGTGTGTCACATATAG+TGG | + | chr4_4:61251075-61251094 | None:intergenic | 45.0% |
| ACTATATGTGACACACCGAG+TGG | - | chr4_4:61251074-61251093 | Msa0692610:intron | 45.0% | |
| ! | GTGCTGCTCTTCCATGATAA+CGG | - | chr4_4:61251121-61251140 | Msa0692610:intron | 45.0% |
| CATACCAGATTCAGCTAGAG+TGG | + | chr4_4:61251230-61251249 | None:intergenic | 45.0% | |
| AATGGCGAAACCTTGTCTTG+CGG | - | chr4_4:61251948-61251967 | Msa0692610:intron | 45.0% | |
| !! | TCGCAAGTTGATGATACCTG+AGG | - | chr4_4:61252569-61252588 | Msa0692610:CDS | 45.0% |
| TTTGTTGAAGGATGCAGTCC+GGG | - | chr4_4:61252676-61252695 | Msa0692610:intron | 45.0% | |
| !!! | TTATTATTTTTAAAATGATT+TGG | - | chr4_4:61248163-61248182 | Msa0692610:three_prime_UTR | 5.0% |
| !! | ATTACTATATTATAATATTT+AGG | - | chr4_4:61250244-61250263 | Msa0692610:intron | 5.0% |
| !! | TACTTTAATATAAAAATATT+TGG | + | chr4_4:61250651-61250670 | None:intergenic | 5.0% |
| !! | AGGAGGTGCTAAGCTAAGCA+AGG | - | chr4_4:61248252-61248271 | Msa0692610:three_prime_UTR | 50.0% |
| !! | GGAGGTGCTAAGCTAAGCAA+GGG | - | chr4_4:61248253-61248272 | Msa0692610:three_prime_UTR | 50.0% |
| ! | GAGGTGCTAAGCTAAGCAAG+GGG | - | chr4_4:61248254-61248273 | Msa0692610:three_prime_UTR | 50.0% |
| CCGTATGGGAATGGAATGGA+GGG | + | chr4_4:61248283-61248302 | None:intergenic | 50.0% | |
| CCCTCCATTCCATTCCCATA+CGG | - | chr4_4:61248280-61248299 | Msa0692610:three_prime_UTR | 50.0% | |
| TCCGTATGGGAATGGAATGG+AGG | + | chr4_4:61248284-61248303 | None:intergenic | 50.0% | |
| TCCATTCCATTCCCATACGG+AGG | - | chr4_4:61248283-61248302 | Msa0692610:three_prime_UTR | 50.0% | |
| CCATTCCATTCCCATACGGA+GGG | - | chr4_4:61248284-61248303 | Msa0692610:three_prime_UTR | 50.0% | |
| ! | AGGGCATTCGCAGGGTTATT+TGG | - | chr4_4:61248315-61248334 | Msa0692610:three_prime_UTR | 50.0% |
| ATTGCTTGTGGTCCAGTCCA+AGG | - | chr4_4:61249759-61249778 | Msa0692610:intron | 50.0% | |
| TTTCATCTACGGCCTTGGAC+TGG | + | chr4_4:61249774-61249793 | None:intergenic | 50.0% | |
| CACGGCACAATTCAGTTAGG+AGG | - | chr4_4:61249909-61249928 | Msa0692610:intron | 50.0% | |
| TGAACACTCCTACCAGAGCT+AGG | + | chr4_4:61250022-61250041 | None:intergenic | 50.0% | |
| GCTCAAAGGCTCTACAATGG+TGG | + | chr4_4:61250076-61250095 | None:intergenic | 50.0% | |
| ACAGTTTCCATCGAAGGCCA+AGG | - | chr4_4:61250141-61250160 | Msa0692610:intron | 50.0% | |
| CCTACTGTAAACCCTTGCCT+TGG | + | chr4_4:61250161-61250180 | None:intergenic | 50.0% | |
| CCAAGGCAAGGGTTTACAGT+AGG | - | chr4_4:61250158-61250177 | Msa0692610:intron | 50.0% | |
| TGGCCCCAAAATTGGGATAG+TGG | - | chr4_4:61250570-61250589 | Msa0692610:intron | 50.0% | |
| ATAGCGACTATCCCGCAATG+TGG | + | chr4_4:61250600-61250619 | None:intergenic | 50.0% | |
| GTAGGGCCTTTGAGTACCAT+AGG | + | chr4_4:61250687-61250706 | None:intergenic | 50.0% | |
| CGTCACACAACACTCCTGTT+AGG | + | chr4_4:61250796-61250815 | None:intergenic | 50.0% | |
| !! | ACAGGAGTGTTGTGTGACGT+TGG | - | chr4_4:61250797-61250816 | Msa0692610:intron | 50.0% |
| ! | CTGGGTTTTACAGCAACCTG+AGG | + | chr4_4:61250919-61250938 | None:intergenic | 50.0% |
| GGTCAAACCAAAGGAGAGGA+AGG | + | chr4_4:61250986-61251005 | None:intergenic | 50.0% | |
| TTGCGACAAAAACGTGGAGC+AGG | + | chr4_4:61251032-61251051 | None:intergenic | 50.0% | |
| ! | TGGGTGTTGCGACAAAAACG+TGG | + | chr4_4:61251038-61251057 | None:intergenic | 50.0% |
| ATATAGTGGTGCGGCCAAAG+TGG | + | chr4_4:61251061-61251080 | None:intergenic | 50.0% | |
| AGAGCAGCACAAAGCAGTGA+TGG | + | chr4_4:61251111-61251130 | None:intergenic | 50.0% | |
| CTGCCATCAACTCAGGTCAT+GGG | + | chr4_4:61252946-61252965 | None:intergenic | 50.0% | |
| CCCTCCGTATGGGAATGGAA+TGG | + | chr4_4:61248287-61248306 | None:intergenic | 55.0% | |
| TTCCATTCCCATACGGAGGG+AGG | - | chr4_4:61248287-61248306 | Msa0692610:three_prime_UTR | 55.0% | |
| TCCATTCCCATACGGAGGGA+GGG | - | chr4_4:61248288-61248307 | Msa0692610:three_prime_UTR | 55.0% | |
| !! | TCTAGGAGCCTAGCTCTGGT+AGG | - | chr4_4:61250011-61250030 | Msa0692610:intron | 55.0% |
| TTCCATCGAAGGCCAAGGCA+AGG | - | chr4_4:61250146-61250165 | Msa0692610:intron | 55.0% | |
| TCCATCGAAGGCCAAGGCAA+GGG | - | chr4_4:61250147-61250166 | Msa0692610:intron | 55.0% | |
| ! | TAGCGGCTGGCCCCAAAATT+GGG | - | chr4_4:61250563-61250582 | Msa0692610:intron | 55.0% |
| GCAGCTGCACAATTAGCTGC+TGG | + | chr4_4:61250848-61250867 | None:intergenic | 55.0% | |
| TGTCGCAACACCCACCACTT+TGG | - | chr4_4:61251044-61251063 | Msa0692610:intron | 55.0% | |
| ATGGACACCACAGAGCCACT+CGG | + | chr4_4:61251092-61251111 | None:intergenic | 55.0% | |
| GTGGCCACTCTAGCTGAATC+TGG | - | chr4_4:61251223-61251242 | Msa0692610:intron | 55.0% | |
| TAGGCTCATGTAGCTGCCTC+AGG | + | chr4_4:61252588-61252607 | None:intergenic | 55.0% | |
| ! | ATGGCTTGGGCAAGCTGTGA+AGG | - | chr4_4:61252910-61252929 | Msa0692610:five_prime_UTR | 55.0% |
| ! | GAGCCCATGACCTGAGTTGA+TGG | - | chr4_4:61252940-61252959 | Msa0692610:five_prime_UTR | 55.0% |
| GCTGCCATCAACTCAGGTCA+TGG | + | chr4_4:61252947-61252966 | None:intergenic | 55.0% | |
| GCAGAAGCTGCCATCAACTC+AGG | + | chr4_4:61252953-61252972 | None:intergenic | 55.0% | |
| TCCCTCCCTCCGTATGGGAA+TGG | + | chr4_4:61248292-61248311 | None:intergenic | 60.0% | |
| ATTCCCATACGGAGGGAGGG+AGG | - | chr4_4:61248291-61248310 | Msa0692610:three_prime_UTR | 60.0% | |
| TTCCCATACGGAGGGAGGGA+GGG | - | chr4_4:61248292-61248311 | Msa0692610:three_prime_UTR | 60.0% | |
| CTGGTCTAGGAGCCTAGCTC+TGG | - | chr4_4:61250007-61250026 | Msa0692610:intron | 60.0% | |
| ! | ACCCTTGCCTTGGCCTTCGA+TGG | + | chr4_4:61250151-61250170 | None:intergenic | 60.0% |
| ! | GTAGCGGCTGGCCCCAAAAT+TGG | - | chr4_4:61250562-61250581 | Msa0692610:intron | 60.0% |
| AGTGGTGCGGCCAAAGTGGT+GGG | + | chr4_4:61251057-61251076 | None:intergenic | 60.0% | |
| TAGTGGTGCGGCCAAAGTGG+TGG | + | chr4_4:61251058-61251077 | None:intergenic | 60.0% | |
| ! | TGACACACCGAGTGGCTCTG+TGG | - | chr4_4:61251082-61251101 | Msa0692610:intron | 60.0% |
| GGGATGGATGCCGCAAGACA+AGG | + | chr4_4:61251961-61251980 | None:intergenic | 60.0% | |
| CTCCCTCCCTCCCTCCGTAT+GGG | + | chr4_4:61248297-61248316 | None:intergenic | 65.0% | |
| CATACGGAGGGAGGGAGGGA+GGG | - | chr4_4:61248296-61248315 | Msa0692610:three_prime_UTR | 65.0% | |
| !! | AGGGAGGGAGGGCATTCGCA+GGG | - | chr4_4:61248307-61248326 | Msa0692610:three_prime_UTR | 65.0% |
| CCTCCCTCCCTCCCTCCGTA+TGG | + | chr4_4:61248298-61248317 | None:intergenic | 70.0% | |
| CCATACGGAGGGAGGGAGGG+AGG | - | chr4_4:61248295-61248314 | Msa0692610:three_prime_UTR | 70.0% | |
| !! | GAGGGAGGGAGGGCATTCGC+AGG | - | chr4_4:61248306-61248325 | Msa0692610:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 61248150 | 61253161 | 61248150 | ID=Msa0692610;Name=Msa0692610 |
| chr4_4 | mRNA | 61248150 | 61253161 | 61248150 | ID=Msa0692610-mRNA-1;Parent=Msa0692610;Name=Msa0692610-mRNA-1;_AED=0.27;_eAED=0.27;_QI=314|0.85|0.87|1|0.85|0.75|8|572|241 |
| chr4_4 | exon | 61248150 | 61248779 | 61248150 | ID=Msa0692610-mRNA-1:exon:16892;Parent=Msa0692610-mRNA-1 |
| chr4_4 | exon | 61249300 | 61249412 | 61249300 | ID=Msa0692610-mRNA-1:exon:16891;Parent=Msa0692610-mRNA-1 |
| chr4_4 | exon | 61250023 | 61250103 | 61250023 | ID=Msa0692610-mRNA-1:exon:16890;Parent=Msa0692610-mRNA-1 |
| chr4_4 | exon | 61251750 | 61251847 | 61251750 | ID=Msa0692610-mRNA-1:exon:16889;Parent=Msa0692610-mRNA-1 |
| chr4_4 | exon | 61251962 | 61252070 | 61251962 | ID=Msa0692610-mRNA-1:exon:16888;Parent=Msa0692610-mRNA-1 |
| chr4_4 | exon | 61252197 | 61252256 | 61252197 | ID=Msa0692610-mRNA-1:exon:16887;Parent=Msa0692610-mRNA-1 |
| chr4_4 | exon | 61252382 | 61252625 | 61252382 | ID=Msa0692610-mRNA-1:exon:16886;Parent=Msa0692610-mRNA-1 |
| chr4_4 | exon | 61252885 | 61253161 | 61252885 | ID=Msa0692610-mRNA-1:exon:16885;Parent=Msa0692610-mRNA-1 |
| chr4_4 | five_prime_UTR | 61252885 | 61253161 | 61252885 | ID=Msa0692610-mRNA-1:five_prime_utr;Parent=Msa0692610-mRNA-1 |
| chr4_4 | five_prime_UTR | 61252589 | 61252625 | 61252589 | ID=Msa0692610-mRNA-1:five_prime_utr;Parent=Msa0692610-mRNA-1 |
| chr4_4 | CDS | 61252382 | 61252588 | 61252382 | ID=Msa0692610-mRNA-1:cds;Parent=Msa0692610-mRNA-1 |
| chr4_4 | CDS | 61252197 | 61252256 | 61252197 | ID=Msa0692610-mRNA-1:cds;Parent=Msa0692610-mRNA-1 |
| chr4_4 | CDS | 61251962 | 61252070 | 61251962 | ID=Msa0692610-mRNA-1:cds;Parent=Msa0692610-mRNA-1 |
| chr4_4 | CDS | 61251750 | 61251847 | 61251750 | ID=Msa0692610-mRNA-1:cds;Parent=Msa0692610-mRNA-1 |
| chr4_4 | CDS | 61250023 | 61250103 | 61250023 | ID=Msa0692610-mRNA-1:cds;Parent=Msa0692610-mRNA-1 |
| chr4_4 | CDS | 61249300 | 61249412 | 61249300 | ID=Msa0692610-mRNA-1:cds;Parent=Msa0692610-mRNA-1 |
| chr4_4 | CDS | 61248722 | 61248779 | 61248722 | ID=Msa0692610-mRNA-1:cds;Parent=Msa0692610-mRNA-1 |
| chr4_4 | three_prime_UTR | 61248150 | 61248721 | 61248150 | ID=Msa0692610-mRNA-1:three_prime_utr;Parent=Msa0692610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
