AlfalfaGEDB | Msa0696950

M. sativa cultivar zhongmu-4 / Msa0696950

KEGG: K04733
GO: -
PFAM: PF00139.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0696950	XP_003608363.3	87.588	709	87	1	1	708	19	727	0.0	1206

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0696950	sp\|Q9LXA5\|LRK91_ARATH	47.867	633	304	15	18	636	5	625	0.0	545

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0696950	A0A396IIA3	86.037	709	82	2	1	708	19	711	0.0	1190

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0696950	Msa0696960	0.871740	5.426808e-67	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0696950	MtrunA17_Chr4g0049581	86.037	709	82	2	1	708	19	711	0.0	1190
Msa0696950	MtrunA17_Chr4g0049611	66.713	718	190	6	1	705	1	682	0.0	944
Msa0696950	MtrunA17_Chr4g0049601	66.071	672	187	14	23	671	27	680	0.0	863
Msa0696950	MtrunA17_Chr7g0274651	48.498	666	293	15	18	649	22	671	0.0	607
Msa0696950	MtrunA17_Chr7g0274661	49.684	632	277	17	18	622	31	648	0.0	588
Msa0696950	MtrunA17_Chr8g0367071	48.706	657	303	17	4	641	7	648	0.0	582
Msa0696950	MtrunA17_Chr4g0049561	46.594	646	316	13	20	647	14	648	0.0	572
Msa0696950	MtrunA17_Chr4g0049551	48.271	665	311	13	8	650	9	662	0.0	565
Msa0696950	MtrunA17_Chr8g0366991	45.345	666	311	14	14	636	104	759	0.0	540
Msa0696950	MtrunA17_Chr8g0366981	45.913	575	263	10	66	636	60	590	4.03e-170	501

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0696950	AT5G10530.1	47.867	633	304	15	18	636	5	625	0.0	545
Msa0696950	AT5G65600.1	47.359	587	272	14	71	636	76	646	7.15e-170	503
Msa0696950	AT5G55830.1	38.498	626	322	17	52	631	47	655	2.05e-125	389
Msa0696950	AT3G53810.1	39.664	595	320	13	58	628	50	629	4.65e-125	387
Msa0696950	AT4G02410.1	36.933	639	345	19	26	628	20	636	1.48e-121	378
Msa0696950	AT3G55550.1	37.562	607	328	15	61	639	52	635	1.97e-119	373
Msa0696950	AT2G37710.1	37.143	595	334	13	58	628	50	628	2.72e-117	367
Msa0696950	AT5G06740.1	40.103	581	297	20	72	632	71	620	3.10e-116	363
Msa0696950	AT5G06740.2	40.103	581	297	20	72	632	83	632	4.35e-116	363
Msa0696950	AT4G02420.1	36.244	607	325	15	58	628	51	631	2.34e-113	357

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Find 142 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTATAATAAACCTTA+AGG	0.446021	4_4:+66967330	Msa0696950:CDS
AAAAGCAAGTAACATCATGT+TGG	0.549295	4_4:+66967114	Msa0696950:CDS
AAAATCTAAACTGGAGTTGA+AGG	0.425839	4_4:-66966474	None:intergenic
AAACACAAAGTTTGTTGAAG+TGG	0.474619	4_4:+66967002	Msa0696950:CDS
AAACTAGGTCAAGGAGGATT+TGG	0.329079	4_4:+66966752	Msa0696950:CDS
AAAGAAAGTGAAGAGGAAGA+TGG	0.534581	4_4:+66966623	Msa0696950:CDS
AAAGGCCCATCAAGATATGT+TGG	0.554078	4_4:-66967595	None:intergenic
AACAAAACCCATCATGCAGA+TGG	0.592275	4_4:+66966008	Msa0696950:CDS
AACACAAAGTTTGTTGAAGT+GGG	0.473515	4_4:+66967003	Msa0696950:CDS
AACGCAATGGTTCACTAGCA+TGG	0.531804	4_4:+66966241	Msa0696950:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCATTCAACTATGAACAACT+TGG	+	chr4_4:66965795-66965814	Msa0696950:CDS	30.0%
AAAATCTAAACTGGAGTTGA+AGG	-	chr4_4:66966477-66966496	None:intergenic	30.0%
TGGTGAATTTGAAGAATACA+TGG	+	chr4_4:66966643-66966662	Msa0696950:CDS	30.0%
GGTGAATTTGAAGAATACAT+GGG	+	chr4_4:66966644-66966663	Msa0696950:CDS	30.0%
TCTGCATATGTATACTTCTT+TGG	-	chr4_4:66966695-66966714	None:intergenic	30.0%
AAAAGCAAGTAACATCATGT+TGG	+	chr4_4:66967114-66967133	Msa0696950:CDS	30.0%
TCAGAGTTTAATGCAAAACT+TGG	+	chr4_4:66967139-66967158	Msa0696950:CDS	30.0%
TGAGCCTTAAGGTTTATTAT+AGG	-	chr4_4:66967337-66967356	None:intergenic	30.0%
TTTGAAGAAGAGCAAATCAA+GGG	+	chr4_4:66967448-66967467	Msa0696950:CDS	30.0%
CTTATTGAAGGCCTATTATT+AGG	-	chr4_4:66967511-66967530	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	66965696	66967822	66965696	ID=Msa0696950;Name=Msa0696950
chr4_4	mRNA	66965696	66967822	66965696	ID=Msa0696950-mRNA-1;Parent=Msa0696950;Name=Msa0696950-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|708
chr4_4	exon	66965696	66967822	66965696	ID=Msa0696950-mRNA-1:exon:19509;Parent=Msa0696950-mRNA-1
chr4_4	CDS	66965696	66967822	66965696	ID=Msa0696950-mRNA-1:cds;Parent=Msa0696950-mRNA-1

Gene Sequence

>Msa0696950

ATGGCAGCATCTTGCTACCATCACAAACCTCATCTTCTTGCTTTCTTTCATGTTACATTAACATTCTTGCTTCTTGTAACATCTCGTGCAGCTCCATTATCATTCAACTATGAACAACTTGGTGGTGACAAAACAAATACCTTCAATATTTCAGGTGATGTCTATCAAGACAACCAAGTCCTCCAACTCACAAAGTACGAGAGAGACAGTCTAGGCAGAGTCACATATTCAAAATTGTTTCATCTTTGGGACAAAAAAACAAGTGAAGTCACAGATTTCAATACTCGTTTCTCATTTTCTATCAACACCCCCAACAAAACCCATCATGCAGATGGCATGACCTTCTATTTGGCACACCCCAATTTTCCCATGTCCCATATATTTGGAGGCGGTATCGGTGTTGCGAGCCTTGTTCAATTGAGCGATCCAAATTACACAAAAGAAAATCCATTTGTAGCTGTGGAATTTGATACCTTCGTTAATGAGTGGGATCCTAGCTATGATCATGTTGGGATTGATGTTAATTCTATCAGCACTTCTTACACAACGCAATGGTTCACTAGCATGGATGAAAGAGGATATGATGCTGAAGTCAGTTACGATTCAAGTTCAAACAATTTAACTGTCACATTTACAGGTTACCAACATAACAACACAATCCAACAACACCTGTTTTATGTTGTTAATCTGAGAGATGTTCTGCCTGATTGGGTTGAATTTGGATTCACTTCAGCAACAGGAACTTTTTGGGGGGAGGAACATACTCTTAGGTCATGGTCCTTCAACTCCAGTTTAGATTTTGAAGCACACAAAGACGAAGGAAAAACAGGACCTGTTATAGGACTAGCATTGGGATTAGGAATTGGTGGATTCATTTTGATTGGTGTATTGAGTCTTATTTCAGTTGTGTTGTGGAAGAGGTGGAAGAAAGAAAGTGAAGAGGAAGATGGTGAATTTGAAGAATACATGGGAGAGGATTTTGGAAGAGGGACAGGACCAAAGAAGTATACATATGCAGAATTAGCACAAGCAGCTAATAATTTCAAAGATGAACATAAACTAGGTCAAGGAGGATTTGGAGGTGTTTATAGGGGTTTTCTTAAAGACACAGACTCTTATGTTGCTATTAAAAGGGTGTCAGAAGATTCACATCAAGGGATAAAGGAGTTCGCATCAGAAGTAAAAATTATTAGCAAGTTAAGGCATCGAAATCTAGTGCAATTGATTGGTTGGTGTCATGAAAGAAAAAAGCTTTTACTTGTATATGAGTACATGCCAAATGGAAGTTTGGACATTCATCTTTTCAAAACACAAAGTTTGTTGAAGTGGGGTGTTAGATATACAATAACTAAAGGCTTGGCATCTGCATTGTTGTACTTGCATGAAGAATGGGAACAATGTGTTGTACATAGAGACATAAAAGCAAGTAACATCATGTTGGATTCAGAGTTTAATGCAAAACTTGGAGATTTTGGTTTAGCAAGGTTTGTGGATCATGCAAAAGGTGCACAAACTACAGCTTTGGCAGGGACTTTGGGATACATGGCTCCAGAATGTGCTACCACAGGAAGAGCTAGTAAAGAAACAGATGTGTATAGTTTTGGTATTGTTGCTTTAGAGGTTGCTTGTGGAAGAAAACCTATAATAAACCTTAAGGCTCAAGAAAATGAAATACATATTGTTGAGTGGGTTTGGGGGCTTTATGGAAGAGGGAGAATTCTTGAAGCAGTGGATCCAAGACTTGGTGGAGATTTTGAAGAAGAGCAAATCAAGGGCCTAATGATTGTTGGTCTTTGGTGTGCTCATCCTGATCCTAATAATAGGCCTTCAATAAGACAAGCAATTCAAGTGCTTAATTTTGAAGTTCCACTTCCTAATCTTTCATCAAGTATGCCTGTACCAACATATCTTGATGGGCCTTTAAACTCTTTTTCAGCTCCATTCAGCACAAATAATTCAGAGGAAAGTCAAAACCAGAATATAAAAAGCTTTAGTTCAACTTCAAACTCATCTTGCTATTATGTATCCTCTAAGACTCTTGATTTTGAAAATAATCAAGCAAGGACCTCACAATCAACCTTTGATGTCATTTCTCCATCAGATGCACTTCTAAATACATACCAGTAG

Protein sequence

>Msa0696950

MAASCYHHKPHLLAFFHVTLTFLLLVTSRAAPLSFNYEQLGGDKTNTFNISGDVYQDNQVLQLTKYERDSLGRVTYSKLFHLWDKKTSEVTDFNTRFSFSINTPNKTHHADGMTFYLAHPNFPMSHIFGGGIGVASLVQLSDPNYTKENPFVAVEFDTFVNEWDPSYDHVGIDVNSISTSYTTQWFTSMDERGYDAEVSYDSSSNNLTVTFTGYQHNNTIQQHLFYVVNLRDVLPDWVEFGFTSATGTFWGEEHTLRSWSFNSSLDFEAHKDEGKTGPVIGLALGLGIGGFILIGVLSLISVVLWKRWKKESEEEDGEFEEYMGEDFGRGTGPKKYTYAELAQAANNFKDEHKLGQGGFGGVYRGFLKDTDSYVAIKRVSEDSHQGIKEFASEVKIISKLRHRNLVQLIGWCHERKKLLLVYEYMPNGSLDIHLFKTQSLLKWGVRYTITKGLASALLYLHEEWEQCVVHRDIKASNIMLDSEFNAKLGDFGLARFVDHAKGAQTTALAGTLGYMAPECATTGRASKETDVYSFGIVALEVACGRKPIINLKAQENEIHIVEWVWGLYGRGRILEAVDPRLGGDFEEEQIKGLMIVGLWCAHPDPNNRPSIRQAIQVLNFEVPLPNLSSSMPVPTYLDGPLNSFSAPFSTNNSEESQNQNIKSFSSTSNSSCYYVSSKTLDFENNQARTSQSTFDVISPSDALLNTYQ*