Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0698040 | XP_013457254.1 | 96.447 | 394 | 12 | 1 | 72 | 463 | 1 | 394 | 0.0 | 777 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0698040 | sp|Q9CAK4|ROH1_ARATH | 36.516 | 419 | 213 | 13 | 73 | 455 | 3 | 404 | 2.67e-82 | 263 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0698040 | A0A072UZK1 | 96.447 | 394 | 12 | 1 | 72 | 463 | 1 | 394 | 0.0 | 777 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0377290 | Msa0698040 | 0.802997 | 4.301312e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0698040 | MtrunA17_Chr4g0051051 | 96.447 | 394 | 12 | 1 | 72 | 463 | 1 | 394 | 0.0 | 777 |
| Msa0698040 | MtrunA17_Chr1g0201811 | 53.676 | 408 | 164 | 4 | 72 | 459 | 1 | 403 | 1.77e-154 | 444 |
| Msa0698040 | MtrunA17_Chr6g0464261 | 54.155 | 373 | 160 | 5 | 89 | 455 | 9 | 376 | 4.10e-138 | 401 |
| Msa0698040 | MtrunA17_Chr6g0464241 | 53.887 | 373 | 161 | 5 | 89 | 455 | 9 | 376 | 1.71e-137 | 400 |
| Msa0698040 | MtrunA17_Chr6g0464271 | 48.787 | 371 | 167 | 5 | 89 | 455 | 9 | 360 | 2.47e-119 | 353 |
| Msa0698040 | MtrunA17_Chr6g0464221 | 53.560 | 323 | 139 | 5 | 89 | 405 | 9 | 326 | 5.36e-118 | 348 |
| Msa0698040 | MtrunA17_Chr8g0387451 | 42.239 | 393 | 203 | 11 | 73 | 455 | 3 | 381 | 9.41e-82 | 258 |
| Msa0698040 | MtrunA17_Chr6g0464281 | 53.659 | 205 | 84 | 5 | 89 | 287 | 9 | 208 | 7.57e-64 | 205 |
| Msa0698040 | MtrunA17_Chr6g0464291 | 53.571 | 140 | 64 | 1 | 319 | 457 | 1 | 140 | 2.93e-41 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0698040 | AT1G74450.1 | 54.020 | 398 | 163 | 5 | 72 | 456 | 1 | 391 | 4.97e-143 | 415 |
| Msa0698040 | AT1G18740.1 | 53.807 | 394 | 160 | 7 | 72 | 455 | 1 | 382 | 9.23e-143 | 414 |
| Msa0698040 | AT1G43630.1 | 52.174 | 391 | 169 | 8 | 71 | 456 | 30 | 407 | 1.81e-134 | 394 |
| Msa0698040 | AT1G63930.1 | 36.516 | 419 | 213 | 13 | 73 | 455 | 3 | 404 | 2.71e-83 | 263 |
| Msa0698040 | AT4G11300.1 | 37.245 | 392 | 212 | 9 | 73 | 455 | 3 | 369 | 8.34e-70 | 226 |
| Msa0698040 | AT4G23530.1 | 34.293 | 382 | 220 | 9 | 91 | 450 | 13 | 385 | 3.40e-52 | 181 |
Find 125 sgRNAs with CRISPR-Local
Find 275 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTCTTTCGCTAGGGTTTC+AGG | 0.143780 | 4_4:+68172964 | Msa0698040:CDS |
| TCTCAGCGTCATAGATCTTT+TGG | 0.183195 | 4_4:+68174147 | Msa0698040:CDS |
| AACGATCTGCAACACGCTTT+TGG | 0.237316 | 4_4:-68173747 | None:intergenic |
| GGGGTTTGGCTGAGGGTTGT+GGG | 0.263128 | 4_4:+68173572 | Msa0698040:CDS |
| CATTGACCGAAGGGCAGTTT+AGG | 0.321777 | 4_4:+68174055 | Msa0698040:CDS |
| AATGAGATTGCTGCAAATAA+AGG | 0.333425 | 4_4:+68174300 | Msa0698040:CDS |
| GAAATTGTGAGTTGTGCTTT+AGG | 0.338068 | 4_4:+68174018 | Msa0698040:CDS |
| TTCGGCTATCAACTATCTTT+CGG | 0.358993 | 4_4:-68174713 | None:intergenic |
| TCAGCAAGCCGCTTGAGTTC+CGG | 0.359891 | 4_4:-68174509 | None:intergenic |
| AGCTATTCCTTGTCAGGATA+GGG | 0.367717 | 4_4:+68174386 | Msa0698040:CDS |
| TACTCCATGTAAATTGCTTC+GGG | 0.371358 | 4_4:-68174431 | None:intergenic |
| ATTACATGTTCTTCGGTCAA+TGG | 0.376136 | 4_4:-68174597 | None:intergenic |
| TGTTGCAGCTATTCCTTGTC+AGG | 0.377112 | 4_4:+68174380 | Msa0698040:CDS |
| CCTTGCTTTGGTCTTTCGCT+AGG | 0.378660 | 4_4:+68172956 | Msa0698040:CDS |
| CAGCTATTCCTTGTCAGGAT+AGG | 0.380570 | 4_4:+68174385 | Msa0698040:CDS |
| CTTTCTTCTTTGACTCGTCC+AGG | 0.391519 | 4_4:-68174482 | None:intergenic |
| ATGATTGATGAGAAAGAATC+AGG | 0.391748 | 4_4:+68174114 | Msa0698040:CDS |
| CATGTAAATTGCTTCGGGAT+TGG | 0.393587 | 4_4:-68174426 | None:intergenic |
| CCGTATGTGGCAAAAGCAAC+TGG | 0.397968 | 4_4:+68173996 | Msa0698040:CDS |
| GTACTCCATGTAAATTGCTT+CGG | 0.402466 | 4_4:-68174432 | None:intergenic |
| ACATGTAATGGAAGTTGAAC+AGG | 0.406076 | 4_4:+68174611 | Msa0698040:CDS |
| TCTTTGACTCGTCCAGGATC+CGG | 0.408725 | 4_4:-68174476 | None:intergenic |
| AACTTCCATTACATGTTCTT+CGG | 0.411299 | 4_4:-68174604 | None:intergenic |
| ATGAATTGCTCTCGATTGAT+TGG | 0.412007 | 4_4:+68173797 | Msa0698040:CDS |
| ACGCTTCCCTTCAACTCAAC+TGG | 0.415417 | 4_4:+68172905 | Msa0698040:CDS |
| AAACTTAACCCACCTTGCTT+TGG | 0.419838 | 4_4:+68172944 | Msa0698040:CDS |
| TCCCTCACGTGGCGCTCCAA+TGG | 0.431848 | 4_4:-68174684 | None:intergenic |
| AAGTGTTGTGAGGATCTTGA+GGG | 0.433490 | 4_4:+68173550 | Msa0698040:intron |
| TCATTTGGTAGATCGTTGTT+TGG | 0.434869 | 4_4:+68173649 | Msa0698040:CDS |
| TAGAGACGGGTTGGATCCAT+TGG | 0.436358 | 4_4:+68174668 | Msa0698040:CDS |
| GGCATTCAAGATCACATTCA+TGG | 0.437225 | 4_4:+68174205 | Msa0698040:CDS |
| TGCAATGGACTGTAGTTGCT+TGG | 0.438495 | 4_4:-68174253 | None:intergenic |
| CTAAACTGCCCTTCGGTCAA+TGG | 0.439271 | 4_4:-68174054 | None:intergenic |
| CTTGGCACATCAAACTATAC+AGG | 0.441341 | 4_4:+68174753 | Msa0698040:CDS |
| GACAGCCACCCGCCACTTGA+CGG | 0.443396 | 4_4:+68174551 | Msa0698040:CDS |
| GAGTTGAAGGGAAGCGTAAT+CGG | 0.443901 | 4_4:-68172899 | None:intergenic |
| CAATCCCGAAGCAATTTACA+TGG | 0.448669 | 4_4:+68174427 | Msa0698040:CDS |
| GGAAGTTGAACAGGATTTGA+AGG | 0.450865 | 4_4:+68174620 | Msa0698040:CDS |
| ATCTTTATTATTCAACAGAA+TGG | 0.452561 | 4_4:-68173869 | None:intergenic |
| CATTTGCACGAGGTGGAACC+AGG | 0.462052 | 4_4:-68174281 | None:intergenic |
| AAGGTGGGTTAAGTTTGCTT+TGG | 0.466926 | 4_4:-68172937 | None:intergenic |
| GCAGTTTAGGAGGGCGAGAA+AGG | 0.470954 | 4_4:+68174068 | Msa0698040:CDS |
| GTTTGGTATGAGGCAGGACC+AGG | 0.472376 | 4_4:+68173666 | Msa0698040:CDS |
| ATGAGATTGCTGCAAATAAA+GGG | 0.480948 | 4_4:+68174301 | Msa0698040:CDS |
| CGCCCTCCTAAACTGCCCTT+CGG | 0.482592 | 4_4:-68174061 | None:intergenic |
| GGGAATCAAGCCCCTCAGTT+CGG | 0.484799 | 4_4:-68174731 | None:intergenic |
| TTCAGATGTCATACGATCCA+TGG | 0.485962 | 4_4:-68173908 | None:intergenic |
| CTCACTTTACGACCGGATCC+TGG | 0.488384 | 4_4:+68174464 | Msa0698040:CDS |
| ATCGTTGTTTGGTATGAGGC+AGG | 0.489438 | 4_4:+68173660 | Msa0698040:CDS |
| CATGGAGTGTCTCTAGGTCC+TGG | 0.490607 | 4_4:+68174223 | Msa0698040:CDS |
| TGTGGAAGCAAGTCATGAAC+CGG | 0.491995 | 4_4:+68173696 | Msa0698040:CDS |
| TAGTTGCTTGGCTGCAGACC+AGG | 0.494155 | 4_4:-68174241 | None:intergenic |
| GTAGATCGTTGTTTGGTATG+AGG | 0.498240 | 4_4:+68173656 | Msa0698040:CDS |
| CTTGCTTTGGTCTTTCGCTA+GGG | 0.498449 | 4_4:+68172957 | Msa0698040:CDS |
| ACTGAGGGGCTTGATTCCCT+TGG | 0.498467 | 4_4:+68174735 | Msa0698040:CDS |
| TGACCGAAGGGCAGTTTAGG+AGG | 0.504334 | 4_4:+68174058 | Msa0698040:CDS |
| ATTTGTAATGCGGGTCGAGA+TGG | 0.508247 | 4_4:+68173961 | Msa0698040:CDS |
| TGTTGTGAGGATCTTGAGGG+GGG | 0.508475 | 4_4:+68173553 | Msa0698040:CDS |
| AACGCCACCAGTTGAGTTGA+AGG | 0.508538 | 4_4:-68172912 | None:intergenic |
| ATTGACCGAAGAACATGTAA+TGG | 0.508630 | 4_4:+68174599 | Msa0698040:CDS |
| GTGTTGTGAGGATCTTGAGG+GGG | 0.515488 | 4_4:+68173552 | Msa0698040:intron |
| GACGAAAACGATGAAGAAGA+AGG | 0.517630 | 4_4:-68173628 | None:intergenic |
| TTTGTAATGCGGGTCGAGAT+GGG | 0.522127 | 4_4:+68173962 | Msa0698040:CDS |
| TACCAGGTCCGTCAAGTGGC+GGG | 0.523722 | 4_4:-68174559 | None:intergenic |
| GATTCGTGTAATCTAGAGCT+TGG | 0.523932 | 4_4:+68173718 | Msa0698040:CDS |
| CGAGAGCAATTCATAATCAC+TGG | 0.525583 | 4_4:-68173788 | None:intergenic |
| CACCCGCCACTTGACGGACC+TGG | 0.528971 | 4_4:+68174557 | Msa0698040:CDS |
| GCACTAGACATTTGTAATGC+GGG | 0.531981 | 4_4:+68173952 | Msa0698040:CDS |
| TGGAACCAGGTTATTTGCAA+TGG | 0.532348 | 4_4:-68174268 | None:intergenic |
| TCCATTGGAGCGCCACGTGA+GGG | 0.533658 | 4_4:+68174683 | Msa0698040:CDS |
| AGCTCTAGATTACACGAATC+CGG | 0.535203 | 4_4:-68173715 | None:intergenic |
| TAAGTGTTGTGAGGATCTTG+AGG | 0.535774 | 4_4:+68173549 | Msa0698040:intron |
| GAGGGCGAGAAAGGCACTGA+TGG | 0.537995 | 4_4:+68174077 | Msa0698040:CDS |
| GAACTCAAGCGGCTTGCTGA+AGG | 0.542765 | 4_4:+68174512 | Msa0698040:CDS |
| CACATTCATGGAGTGTCTCT+AGG | 0.544575 | 4_4:+68174217 | Msa0698040:CDS |
| ATCTGAATTCATTGAGAGGT+CGG | 0.548398 | 4_4:+68173924 | Msa0698040:CDS |
| GCTATTCCTTGTCAGGATAG+GGG | 0.548433 | 4_4:+68174387 | Msa0698040:CDS |
| CAGTTGCCTCACTTTACGAC+CGG | 0.549884 | 4_4:+68174457 | Msa0698040:CDS |
| GGCACTGATGGATTTAGCAC+TGG | 0.556578 | 4_4:+68174089 | Msa0698040:CDS |
| ACAAGGAATAGCTGCAACAA+GGG | 0.556963 | 4_4:-68174376 | None:intergenic |
| GAAACTGAGCAGAATCTACC+AGG | 0.561373 | 4_4:-68174575 | None:intergenic |
| ATAGTTGATAGCCGAACTGA+GGG | 0.570229 | 4_4:+68174720 | Msa0698040:CDS |
| GACCGAAGGGCAGTTTAGGA+GGG | 0.570937 | 4_4:+68174059 | Msa0698040:CDS |
| GACAAGGAATAGCTGCAACA+AGG | 0.579699 | 4_4:-68174377 | None:intergenic |
| ACGAAAACGATGAAGAAGAA+GGG | 0.593698 | 4_4:-68173627 | None:intergenic |
| TTGCTTCCACAGAATGAACC+TGG | 0.596071 | 4_4:-68173684 | None:intergenic |
| GTTTGTGAGAATGCCTTCCA+CGG | 0.596488 | 4_4:+68173594 | Msa0698040:CDS |
| ATTGGAGCGCCACGTGAGGG+AGG | 0.597373 | 4_4:+68174686 | Msa0698040:CDS |
| ATCCATTGGAGCGCCACGTG+AGG | 0.600405 | 4_4:+68174682 | Msa0698040:CDS |
| TCAGATGTCATACGATCCAT+GGG | 0.603285 | 4_4:-68173907 | None:intergenic |
| CAGGTCCGTCAAGTGGCGGG+TGG | 0.603406 | 4_4:-68174556 | None:intergenic |
| GGCACTAGACATTTGTAATG+CGG | 0.604362 | 4_4:+68173951 | Msa0698040:CDS |
| CTACCAGGTCCGTCAAGTGG+CGG | 0.604768 | 4_4:-68174560 | None:intergenic |
| AGTGTTGTGAGGATCTTGAG+GGG | 0.604776 | 4_4:+68173551 | Msa0698040:intron |
| GCGAAAGACCAAAGCAAGGT+GGG | 0.609741 | 4_4:-68172952 | None:intergenic |
| CTGTATAGTTTGATGTGCCA+AGG | 0.610377 | 4_4:-68174752 | None:intergenic |
| AGTCAAAGAAGAAAGAGCAC+CGG | 0.610994 | 4_4:+68174490 | Msa0698040:CDS |
| GCAGGACCAGGTTCATTCTG+TGG | 0.612935 | 4_4:+68173678 | Msa0698040:CDS |
| ATAAGCGACCATTGACCGAA+GGG | 0.613621 | 4_4:+68174046 | Msa0698040:CDS |
| TGGGAGGCATAACTCGAGCA+AGG | 0.614020 | 4_4:+68174167 | Msa0698040:CDS |
| ATTCATTGAGAGGTCGGTCA+AGG | 0.614129 | 4_4:+68173930 | Msa0698040:CDS |
| GAATGGCTCTGAATTCATCA+TGG | 0.614996 | 4_4:-68173852 | None:intergenic |
| ACGCCACCAGTTGAGTTGAA+GGG | 0.616653 | 4_4:-68172911 | None:intergenic |
| TTCGGAACACCTCCCTCACG+TGG | 0.618299 | 4_4:-68174695 | None:intergenic |
| GGATTGAGACTATCCGTATG+TGG | 0.621190 | 4_4:+68173983 | Msa0698040:CDS |
| GCAATCTCATTTGCACGAGG+TGG | 0.622309 | 4_4:-68174288 | None:intergenic |
| TGTATAGTTTGATGTGCCAA+GGG | 0.623260 | 4_4:-68174751 | None:intergenic |
| TCAGTTATCGAAACCTCCCA+TGG | 0.624099 | 4_4:+68173891 | Msa0698040:CDS |
| CTTCCCTTCAACTCAACTGG+TGG | 0.624816 | 4_4:+68172908 | Msa0698040:CDS |
| AAAGAGCACCGGAACTCAAG+CGG | 0.627839 | 4_4:+68174501 | Msa0698040:CDS |
| CAGGATCCGGTCGTAAAGTG+AGG | 0.628978 | 4_4:-68174463 | None:intergenic |
| GACTCTGGTTAAGTGTTGTG+AGG | 0.629582 | 4_4:+68173540 | Msa0698040:intron |
| GATAGTTGATAGCCGAACTG+AGG | 0.632654 | 4_4:+68174719 | Msa0698040:CDS |
| AATCTACCAGGTCCGTCAAG+TGG | 0.633418 | 4_4:-68174563 | None:intergenic |
| ACAGTCCATTGCAAATAACC+TGG | 0.633958 | 4_4:+68174263 | Msa0698040:CDS |
| GCAAGGATAGTCATTCGACT+AGG | 0.636083 | 4_4:+68174184 | Msa0698040:CDS |
| AATAAGCGACCATTGACCGA+AGG | 0.639297 | 4_4:+68174045 | Msa0698040:CDS |
| TTTAAACCCCTATCCTGACA+AGG | 0.658776 | 4_4:-68174393 | None:intergenic |
| AGCGAAAGACCAAAGCAAGG+TGG | 0.658913 | 4_4:-68172953 | None:intergenic |
| TTGGCACATCAAACTATACA+GGG | 0.662135 | 4_4:+68174754 | Msa0698040:CDS |
| TGACATCTGAATTCATTGAG+AGG | 0.667207 | 4_4:+68173920 | Msa0698040:CDS |
| GATGTCATACGATCCATGGG+AGG | 0.675731 | 4_4:-68173904 | None:intergenic |
| GCAGCAATCTCATTTGCACG+AGG | 0.681247 | 4_4:-68174291 | None:intergenic |
| CCTAGCGAAAGACCAAAGCA+AGG | 0.697917 | 4_4:-68172956 | None:intergenic |
| TAGTTGATAGCCGAACTGAG+GGG | 0.803639 | 4_4:+68174721 | Msa0698040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGTTATTATATTTTTTTG+GGG | + | chr4_4:68170810-68170829 | Msa0698040:intron | 10.0% |
| !! | ACAAAAAAATACAATAAAAA+AGG | + | chr4_4:68170880-68170899 | Msa0698040:intron | 10.0% |
| !! | TTTATGATGAAAAATAAAAA+AGG | + | chr4_4:68171283-68171302 | Msa0698040:intron | 10.0% |
| !! | TTATGATGAAAAATAAAAAA+GGG | + | chr4_4:68171284-68171303 | Msa0698040:intron | 10.0% |
| !!! | TTTTTTTTTTAAAGATTTGT+CGG | + | chr4_4:68171628-68171647 | Msa0698040:intron | 10.0% |
| !! | TAAGTAAGTTAATTATATAA+AGG | + | chr4_4:68172363-68172382 | Msa0698040:intron | 10.0% |
| !!! | ATTTGAGTTTAAATTATGAA+AGG | - | chr4_4:68171157-68171176 | None:intergenic | 15.0% |
| !! | TATGATGAAAAATAAAAAAG+GGG | + | chr4_4:68171285-68171304 | Msa0698040:intron | 15.0% |
| !!! | TTTTTTTTTAAAGATTTGTC+GGG | + | chr4_4:68171629-68171648 | Msa0698040:intron | 15.0% |
| !!! | ATAAAGGTTTGATTTTTATT+TGG | + | chr4_4:68173216-68173235 | Msa0698040:intron | 15.0% |
| !!! | TAAAGGTTTGATTTTTATTT+GGG | + | chr4_4:68173217-68173236 | Msa0698040:intron | 15.0% |
| !! | ACCACAAAAAAAAAAATCAT+GGG | + | chr4_4:68171009-68171028 | Msa0698040:intron | 20.0% |
| !! | GATTCATATGAAAGAAATTA+GGG | - | chr4_4:68171129-68171148 | None:intergenic | 20.0% |
| !! | ATGATGAAAAATAAAAAAGG+GGG | + | chr4_4:68171286-68171305 | Msa0698040:intron | 20.0% |
| !!! | TATTTTGATAGTGTATAGTA+TGG | + | chr4_4:68171316-68171335 | Msa0698040:intron | 20.0% |
| !!! | TATACCTTTTTTAGATTTAG+AGG | - | chr4_4:68171743-68171762 | None:intergenic | 20.0% |
| !!! | CTACTAGAATTGTTTTTTAT+GGG | + | chr4_4:68171834-68171853 | Msa0698040:intron | 20.0% |
| !!! | TACTAGAATTGTTTTTTATG+GGG | + | chr4_4:68171835-68171854 | Msa0698040:intron | 20.0% |
| !! | AATCAATAATTGTTTCATAG+AGG | + | chr4_4:68171910-68171929 | Msa0698040:intron | 20.0% |
| !!! | ATCAAACTTAGTTTTATCAA+AGG | + | chr4_4:68171934-68171953 | Msa0698040:intron | 20.0% |
| !!! | TCAAACTTAGTTTTATCAAA+GGG | + | chr4_4:68171935-68171954 | Msa0698040:intron | 20.0% |
| !! | TATTCAATTACAAGATAGTT+AGG | - | chr4_4:68172504-68172523 | None:intergenic | 20.0% |
| !!! | AAAGGTTTGATTTTTATTTG+GGG | + | chr4_4:68173218-68173237 | Msa0698040:intron | 20.0% |
| !!! | CGATTATGTTTTGAATTAAT+TGG | + | chr4_4:68173434-68173453 | Msa0698040:intron | 20.0% |
| !! | ATCTTTATTATTCAACAGAA+TGG | - | chr4_4:68173872-68173891 | None:intergenic | 20.0% |
| ! | CTATAGTAGGTCATAATTAT+GGG | + | chr4_4:68170913-68170932 | Msa0698040:intron | 25.0% |
| !!! | CATGATTTTTTTTTTTGTGG+TGG | - | chr4_4:68171010-68171029 | None:intergenic | 25.0% |
| ! | CACCACAAAAAAAAAAATCA+TGG | + | chr4_4:68171008-68171027 | Msa0698040:intron | 25.0% |
| !!! | ACCCATGATTTTTTTTTTTG+TGG | - | chr4_4:68171013-68171032 | None:intergenic | 25.0% |
| ! | ATATGAAAGAAATTAGGGTT+AGG | - | chr4_4:68171124-68171143 | None:intergenic | 25.0% |
| ! | GGATTCATATGAAAGAAATT+AGG | - | chr4_4:68171130-68171149 | None:intergenic | 25.0% |
| ! | GTTTAAATTATGAAAGGAGT+AGG | - | chr4_4:68171151-68171170 | None:intergenic | 25.0% |
| ! | CAGTTAAGATTTAAAAGAGT+TGG | - | chr4_4:68171183-68171202 | None:intergenic | 25.0% |
| !! | CAACTCTTTTAAATCTTAAC+TGG | + | chr4_4:68171181-68171200 | Msa0698040:intron | 25.0% |
| ! | GTGATAAGTTACAATATTTG+AGG | - | chr4_4:68171550-68171569 | None:intergenic | 25.0% |
| ! | ATGAATTGATAAGGATTGAT+GGG | - | chr4_4:68171677-68171696 | None:intergenic | 25.0% |
| ! | TATACTCACATGAATTGATA+AGG | - | chr4_4:68171686-68171705 | None:intergenic | 25.0% |
| ! | CAATCCTCTAAATCTAAAAA+AGG | + | chr4_4:68171736-68171755 | Msa0698040:intron | 25.0% |
| !!! | GCTACTAGAATTGTTTTTTA+TGG | + | chr4_4:68171833-68171852 | Msa0698040:intron | 25.0% |
| !!! | CAAACTTAGTTTTATCAAAG+GGG | + | chr4_4:68171936-68171955 | Msa0698040:intron | 25.0% |
| ! | GATGAATCATTTGATAAATG+GGG | - | chr4_4:68172232-68172251 | None:intergenic | 25.0% |
| ! | GGATGAATCATTTGATAAAT+GGG | - | chr4_4:68172233-68172252 | None:intergenic | 25.0% |
| ! | AGGATGAATCATTTGATAAA+TGG | - | chr4_4:68172234-68172253 | None:intergenic | 25.0% |
| ! | AATTTATTCCATTCGATGAA+GGG | - | chr4_4:68172664-68172683 | None:intergenic | 25.0% |
| ! | TAATTTATTCCATTCGATGA+AGG | - | chr4_4:68172665-68172684 | None:intergenic | 25.0% |
| ! | TAAGAAGAGTAAAAAAACGA+GGG | - | chr4_4:68173002-68173021 | None:intergenic | 25.0% |
| ! | ATAAGAAGAGTAAAAAAACG+AGG | - | chr4_4:68173003-68173022 | None:intergenic | 25.0% |
| ! | ATCGAGAAAATAAAGATCAT+GGG | - | chr4_4:68173031-68173050 | None:intergenic | 25.0% |
| ! | AATCGAGAAAATAAAGATCA+TGG | - | chr4_4:68173032-68173051 | None:intergenic | 25.0% |
| ! | TGAAGATTGTACGAATTAAT+TGG | + | chr4_4:68173170-68173189 | Msa0698040:intron | 25.0% |
| ! | GTATTGGAAAATTCTGATAA+AGG | + | chr4_4:68173200-68173219 | Msa0698040:intron | 25.0% |
| !!! | TTGTTGTTTAAAAGTGATGT+TGG | + | chr4_4:68173270-68173289 | Msa0698040:intron | 25.0% |
| !! | ATTTGAGAATTTTTCTGATG+TGG | + | chr4_4:68173309-68173328 | Msa0698040:intron | 25.0% |
| !! | TTTGAGAATTTTTCTGATGT+GGG | + | chr4_4:68173310-68173329 | Msa0698040:intron | 25.0% |
| !!! | GTGGGTTTTGATTTTAATAT+TGG | + | chr4_4:68173328-68173347 | Msa0698040:intron | 25.0% |
| !!! | TACTGTATTAGGTTTTGAAT+TGG | + | chr4_4:68173389-68173408 | Msa0698040:intron | 25.0% |
| !!! | ATCGTTTTAATGAACTTTCT+GGG | + | chr4_4:68173764-68173783 | Msa0698040:CDS | 25.0% |
| AGGAAAAATTGTGCTATAGT+AGG | + | chr4_4:68170900-68170919 | Msa0698040:intron | 30.0% | |
| GCTATAGTAGGTCATAATTA+TGG | + | chr4_4:68170912-68170931 | Msa0698040:intron | 30.0% | |
| !!! | ATTTTTTTTTTTGTGGTGGC+GGG | - | chr4_4:68171006-68171025 | None:intergenic | 30.0% |
| !!! | GATTTTTTTTTTTGTGGTGG+CGG | - | chr4_4:68171007-68171026 | None:intergenic | 30.0% |
| AACCATTTAATCCAGATACT+CGG | + | chr4_4:68171078-68171097 | Msa0698040:intron | 30.0% | |
| ! | ATATTTGAGGTCAAGATGAA+TGG | - | chr4_4:68171537-68171556 | None:intergenic | 30.0% |
| CATGAATTGATAAGGATTGA+TGG | - | chr4_4:68171678-68171697 | None:intergenic | 30.0% | |
| ! | TAGAGGATTGATAACAATTC+TGG | - | chr4_4:68171726-68171745 | None:intergenic | 30.0% |
| TAGATTCTCTCATCAATTAG+AGG | + | chr4_4:68171810-68171829 | Msa0698040:intron | 30.0% | |
| AGATTCTCTCATCAATTAGA+GGG | + | chr4_4:68171811-68171830 | Msa0698040:intron | 30.0% | |
| !!! | TAGAATTGTTTTTTATGGGG+AGG | + | chr4_4:68171838-68171857 | Msa0698040:intron | 30.0% |
| TTGCAATTTCTCTTCATTCA+GGG | - | chr4_4:68172009-68172028 | None:intergenic | 30.0% | |
| TTTGCAATTTCTCTTCATTC+AGG | - | chr4_4:68172010-68172029 | None:intergenic | 30.0% | |
| TTTGCAATTTATCTGCATTC+AGG | + | chr4_4:68172158-68172177 | Msa0698040:intron | 30.0% | |
| TTGCAATTTATCTGCATTCA+GGG | + | chr4_4:68172159-68172178 | Msa0698040:intron | 30.0% | |
| GTTATCAATAAACTGCACAA+AGG | - | chr4_4:68172254-68172273 | None:intergenic | 30.0% | |
| AAAAGTAGTCGTTAACTTTG+AGG | - | chr4_4:68172392-68172411 | None:intergenic | 30.0% | |
| AGTAAAAAAACGAGGGAAAA+TGG | - | chr4_4:68172995-68173014 | None:intergenic | 30.0% | |
| !!! | CTACTCTTTTTTCACTTCAA+AGG | + | chr4_4:68173052-68173071 | Msa0698040:intron | 30.0% |
| TGTGAGAGAGCTATAAAAAA+AGG | - | chr4_4:68173080-68173099 | None:intergenic | 30.0% | |
| !!! | AGTTTTTTTCGTAATCATGC+TGG | + | chr4_4:68173135-68173154 | Msa0698040:intron | 30.0% |
| TGTACGAATTAATTGGTATC+TGG | + | chr4_4:68173177-68173196 | Msa0698040:intron | 30.0% | |
| GTACGAATTAATTGGTATCT+GGG | + | chr4_4:68173178-68173197 | Msa0698040:intron | 30.0% | |
| ATTAATTGGTATCTGGGTAT+TGG | + | chr4_4:68173184-68173203 | Msa0698040:intron | 30.0% | |
| !!! | GGTGTTTTGATTACTGTATT+AGG | + | chr4_4:68173378-68173397 | Msa0698040:intron | 30.0% |
| AATTGGATTCAGTTACTTGT+AGG | + | chr4_4:68173451-68173470 | Msa0698040:intron | 30.0% | |
| !! | GATCGTTTTAATGAACTTTC+TGG | + | chr4_4:68173763-68173782 | Msa0698040:CDS | 30.0% |
| !! | TCGTTTTAATGAACTTTCTG+GGG | + | chr4_4:68173765-68173784 | Msa0698040:CDS | 30.0% |
| ATGATTGATGAGAAAGAATC+AGG | + | chr4_4:68174114-68174133 | Msa0698040:CDS | 30.0% | |
| AATGAGATTGCTGCAAATAA+AGG | + | chr4_4:68174300-68174319 | Msa0698040:CDS | 30.0% | |
| ATGAGATTGCTGCAAATAAA+GGG | + | chr4_4:68174301-68174320 | Msa0698040:CDS | 30.0% | |
| !!! | GTATTCTCTTGTTTGTTTTG+TGG | + | chr4_4:68174352-68174371 | Msa0698040:CDS | 30.0% |
| AACTTCCATTACATGTTCTT+CGG | - | chr4_4:68174607-68174626 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTTTTGTGGTGGCG+GGG | - | chr4_4:68171005-68171024 | None:intergenic | 35.0% |
| GGGTTAGGTTAATAGTCTAA+TGG | - | chr4_4:68171109-68171128 | None:intergenic | 35.0% | |
| TGGACAAAAAAACTACCTCA+TGG | + | chr4_4:68171336-68171355 | Msa0698040:intron | 35.0% | |
| TTGTTCTTCGATAAACCATG+AGG | - | chr4_4:68171354-68171373 | None:intergenic | 35.0% | |
| TTGTCCGATCTCTTATTACA+TGG | + | chr4_4:68171386-68171405 | Msa0698040:intron | 35.0% | |
| CACACCATGTAATAAGAGAT+CGG | - | chr4_4:68171393-68171412 | None:intergenic | 35.0% | |
| AATTGAAGTCCATCTTCCAT+TGG | - | chr4_4:68171576-68171595 | None:intergenic | 35.0% | |
| ATTCAGAGTCATGACTTTGT+CGG | + | chr4_4:68171593-68171612 | Msa0698040:intron | 35.0% | |
| ATAAGGATTGATGGGAAAGT+TGG | - | chr4_4:68171669-68171688 | None:intergenic | 35.0% | |
| ACTAACGAAGTTTGCATTCA+GGG | + | chr4_4:68172098-68172117 | Msa0698040:intron | 35.0% | |
| !! | CTTGATCTGTTTGTTGTGAT+TGG | + | chr4_4:68173357-68173376 | Msa0698040:intron | 35.0% |
| GTAGGAAATAGAACTGAAAG+AGG | + | chr4_4:68173469-68173488 | Msa0698040:intron | 35.0% | |
| !!! | TAATGCAGAGCTGTTTTTGA+TGG | + | chr4_4:68173498-68173517 | Msa0698040:intron | 35.0% |
| !!! | AATGCAGAGCTGTTTTTGAT+GGG | + | chr4_4:68173499-68173518 | Msa0698040:intron | 35.0% |
| ACGAAAACGATGAAGAAGAA+GGG | - | chr4_4:68173630-68173649 | None:intergenic | 35.0% | |
| ! | TCTTCATCGTTTTCGTCATT+TGG | + | chr4_4:68173634-68173653 | Msa0698040:CDS | 35.0% |
| TCATTTGGTAGATCGTTGTT+TGG | + | chr4_4:68173649-68173668 | Msa0698040:CDS | 35.0% | |
| ATGAATTGCTCTCGATTGAT+TGG | + | chr4_4:68173797-68173816 | Msa0698040:CDS | 35.0% | |
| TGACATCTGAATTCATTGAG+AGG | + | chr4_4:68173920-68173939 | Msa0698040:CDS | 35.0% | |
| ATCTGAATTCATTGAGAGGT+CGG | + | chr4_4:68173924-68173943 | Msa0698040:CDS | 35.0% | |
| GAAATTGTGAGTTGTGCTTT+AGG | + | chr4_4:68174018-68174037 | Msa0698040:CDS | 35.0% | |
| TACTCCATGTAAATTGCTTC+GGG | - | chr4_4:68174434-68174453 | None:intergenic | 35.0% | |
| GTACTCCATGTAAATTGCTT+CGG | - | chr4_4:68174435-68174454 | None:intergenic | 35.0% | |
| ATTACATGTTCTTCGGTCAA+TGG | - | chr4_4:68174600-68174619 | None:intergenic | 35.0% | |
| ATTGACCGAAGAACATGTAA+TGG | + | chr4_4:68174599-68174618 | Msa0698040:CDS | 35.0% | |
| ! | ACATGTAATGGAAGTTGAAC+AGG | + | chr4_4:68174611-68174630 | Msa0698040:CDS | 35.0% |
| TTCGGCTATCAACTATCTTT+CGG | - | chr4_4:68174716-68174735 | None:intergenic | 35.0% | |
| TGTATAGTTTGATGTGCCAA+GGG | - | chr4_4:68174754-68174773 | None:intergenic | 35.0% | |
| TTGGCACATCAAACTATACA+GGG | + | chr4_4:68174754-68174773 | Msa0698040:CDS | 35.0% | |
| CTTTGTGAGCTTAACTCAGT+TGG | + | chr4_4:68170939-68170958 | Msa0698040:intron | 40.0% | |
| ! | TGAGCTTAACTCAGTTGGTA+TGG | + | chr4_4:68170944-68170963 | Msa0698040:intron | 40.0% |
| !!! | TTTTTTTTTTGTGGTGGCGG+GGG | - | chr4_4:68171004-68171023 | None:intergenic | 40.0% |
| AGCCGAGTATCTGGATTAAA+TGG | - | chr4_4:68171083-68171102 | None:intergenic | 40.0% | |
| TGTAACTTATCACGAGCCAA+TGG | + | chr4_4:68171557-68171576 | Msa0698040:intron | 40.0% | |
| TTCAGAGTCATGACTTTGTC+GGG | + | chr4_4:68171594-68171613 | Msa0698040:intron | 40.0% | |
| !!! | GTTTTTTATGGGGAGGAATG+AGG | + | chr4_4:68171845-68171864 | Msa0698040:intron | 40.0% |
| ! | TAGTCACTTTAGTCCCTGAA+TGG | + | chr4_4:68171962-68171981 | Msa0698040:intron | 40.0% |
| ! | AGTCACTTTAGTCCCTGAAT+GGG | + | chr4_4:68171963-68171982 | Msa0698040:intron | 40.0% |
| TCAGGGACTAAAGTGACTAA+CGG | + | chr4_4:68172051-68172070 | Msa0698040:intron | 40.0% | |
| ACTAACGGAGTCTACATTCA+GGG | + | chr4_4:68172066-68172085 | Msa0698040:intron | 40.0% | |
| GACTAACGAAGTTTGCATTC+AGG | + | chr4_4:68172097-68172116 | Msa0698040:intron | 40.0% | |
| ! | AGTCACTTTAGTCCCTGAAT+CGG | - | chr4_4:68171963-68171982 | None:intergenic | 40.0% |
| AACACTTACCCTTCATCGAA+TGG | + | chr4_4:68172653-68172672 | Msa0698040:intron | 40.0% | |
| !! | AAGGTGGGTTAAGTTTGCTT+TGG | - | chr4_4:68172940-68172959 | None:intergenic | 40.0% |
| AAACTTAACCCACCTTGCTT+TGG | + | chr4_4:68172944-68172963 | Msa0698040:CDS | 40.0% | |
| ! | TAAGTGTTGTGAGGATCTTG+AGG | + | chr4_4:68173549-68173568 | Msa0698040:intron | 40.0% |
| ! | AAGTGTTGTGAGGATCTTGA+GGG | + | chr4_4:68173550-68173569 | Msa0698040:intron | 40.0% |
| GACGAAAACGATGAAGAAGA+AGG | - | chr4_4:68173631-68173650 | None:intergenic | 40.0% | |
| GTAGATCGTTGTTTGGTATG+AGG | + | chr4_4:68173656-68173675 | Msa0698040:CDS | 40.0% | |
| !! | AGCTCTAGATTACACGAATC+CGG | - | chr4_4:68173718-68173737 | None:intergenic | 40.0% |
| ! | GATTCGTGTAATCTAGAGCT+TGG | + | chr4_4:68173718-68173737 | Msa0698040:CDS | 40.0% |
| CGAGAGCAATTCATAATCAC+TGG | - | chr4_4:68173791-68173810 | None:intergenic | 40.0% | |
| !! | GAATGGCTCTGAATTCATCA+TGG | - | chr4_4:68173855-68173874 | None:intergenic | 40.0% |
| TCAGATGTCATACGATCCAT+GGG | - | chr4_4:68173910-68173929 | None:intergenic | 40.0% | |
| TTCAGATGTCATACGATCCA+TGG | - | chr4_4:68173911-68173930 | None:intergenic | 40.0% | |
| GGCACTAGACATTTGTAATG+CGG | + | chr4_4:68173951-68173970 | Msa0698040:CDS | 40.0% | |
| GCACTAGACATTTGTAATGC+GGG | + | chr4_4:68173952-68173971 | Msa0698040:CDS | 40.0% | |
| ! | TCTCAGCGTCATAGATCTTT+TGG | + | chr4_4:68174147-68174166 | Msa0698040:CDS | 40.0% |
| ! | CTCAGCGTCATAGATCTTTT+GGG | + | chr4_4:68174148-68174167 | Msa0698040:CDS | 40.0% |
| GGCATTCAAGATCACATTCA+TGG | + | chr4_4:68174205-68174224 | Msa0698040:CDS | 40.0% | |
| ACAGTCCATTGCAAATAACC+TGG | + | chr4_4:68174263-68174282 | Msa0698040:CDS | 40.0% | |
| TGGAACCAGGTTATTTGCAA+TGG | - | chr4_4:68174271-68174290 | None:intergenic | 40.0% | |
| ACAAGGAATAGCTGCAACAA+GGG | - | chr4_4:68174379-68174398 | None:intergenic | 40.0% | |
| AGCTATTCCTTGTCAGGATA+GGG | + | chr4_4:68174386-68174405 | Msa0698040:CDS | 40.0% | |
| TTTAAACCCCTATCCTGACA+AGG | - | chr4_4:68174396-68174415 | None:intergenic | 40.0% | |
| CATGTAAATTGCTTCGGGAT+TGG | - | chr4_4:68174429-68174448 | None:intergenic | 40.0% | |
| CAATCCCGAAGCAATTTACA+TGG | + | chr4_4:68174427-68174446 | Msa0698040:CDS | 40.0% | |
| ! | AGTCAAAGAAGAAAGAGCAC+CGG | + | chr4_4:68174490-68174509 | Msa0698040:CDS | 40.0% |
| GGAAGTTGAACAGGATTTGA+AGG | + | chr4_4:68174620-68174639 | Msa0698040:CDS | 40.0% | |
| !! | GCTTCAGAAGCTTTTAGAGA+CGG | + | chr4_4:68174654-68174673 | Msa0698040:CDS | 40.0% |
| !! | CTTCAGAAGCTTTTAGAGAC+GGG | + | chr4_4:68174655-68174674 | Msa0698040:CDS | 40.0% |
| !! | ATAGTTGATAGCCGAACTGA+GGG | + | chr4_4:68174720-68174739 | Msa0698040:CDS | 40.0% |
| CTGTATAGTTTGATGTGCCA+AGG | - | chr4_4:68174755-68174774 | None:intergenic | 40.0% | |
| CTTGGCACATCAAACTATAC+AGG | + | chr4_4:68174753-68174772 | Msa0698040:CDS | 40.0% | |
| GACAATTCGTCGTCAGTTGT+TGG | - | chr4_4:68170782-68170801 | None:intergenic | 45.0% | |
| GGTTCAATACGAGTGAGAGA+AGG | + | chr4_4:68171030-68171049 | Msa0698040:intron | 45.0% | |
| TAATGGTTGAGCCGAGTATC+TGG | - | chr4_4:68171092-68171111 | None:intergenic | 45.0% | |
| TATCACGAGCCAATGGAAGA+TGG | + | chr4_4:68171564-68171583 | Msa0698040:intron | 45.0% | |
| GATTGATGGGAAAGTTGGAG+GGG | - | chr4_4:68171664-68171683 | None:intergenic | 45.0% | |
| GGATTGATGGGAAAGTTGGA+GGG | - | chr4_4:68171665-68171684 | None:intergenic | 45.0% | |
| AGGATTGATGGGAAAGTTGG+AGG | - | chr4_4:68171666-68171685 | None:intergenic | 45.0% | |
| ATTGCAAAACAGTCCCTGCA+TGG | + | chr4_4:68172022-68172041 | Msa0698040:intron | 45.0% | |
| TCCCTGCATGGTCAATTTCA+GGG | + | chr4_4:68172034-68172053 | Msa0698040:intron | 45.0% | |
| TCCCTGAAATTGACCATGCA+GGG | - | chr4_4:68172038-68172057 | None:intergenic | 45.0% | |
| GACTAACGGAGTCTACATTC+AGG | + | chr4_4:68172065-68172084 | Msa0698040:intron | 45.0% | |
| CTTTAGTCCCTGAATCGGAA+GGG | - | chr4_4:68172200-68172219 | None:intergenic | 45.0% | |
| ACTTTAGTCCCTGAATCGGA+AGG | - | chr4_4:68172201-68172220 | None:intergenic | 45.0% | |
| ! | GAGTTGAAGGGAAGCGTAAT+CGG | - | chr4_4:68172902-68172921 | None:intergenic | 45.0% |
| ! | CTTGCTTTGGTCTTTCGCTA+GGG | + | chr4_4:68172957-68172976 | Msa0698040:CDS | 45.0% |
| CATGTGATCTTGTGTGACTC+TGG | + | chr4_4:68173525-68173544 | Msa0698040:intron | 45.0% | |
| ! | GACTCTGGTTAAGTGTTGTG+AGG | + | chr4_4:68173540-68173559 | Msa0698040:intron | 45.0% |
| AGTGTTGTGAGGATCTTGAG+GGG | + | chr4_4:68173551-68173570 | Msa0698040:intron | 45.0% | |
| GTTTGTGAGAATGCCTTCCA+CGG | + | chr4_4:68173594-68173613 | Msa0698040:CDS | 45.0% | |
| ATCGTTGTTTGGTATGAGGC+AGG | + | chr4_4:68173660-68173679 | Msa0698040:CDS | 45.0% | |
| TTGCTTCCACAGAATGAACC+TGG | - | chr4_4:68173687-68173706 | None:intergenic | 45.0% | |
| TGTGGAAGCAAGTCATGAAC+CGG | + | chr4_4:68173696-68173715 | Msa0698040:CDS | 45.0% | |
| ! | AACGATCTGCAACACGCTTT+TGG | - | chr4_4:68173750-68173769 | None:intergenic | 45.0% |
| TCAGTTATCGAAACCTCCCA+TGG | + | chr4_4:68173891-68173910 | Msa0698040:CDS | 45.0% | |
| ATTCATTGAGAGGTCGGTCA+AGG | + | chr4_4:68173930-68173949 | Msa0698040:CDS | 45.0% | |
| ATTTGTAATGCGGGTCGAGA+TGG | + | chr4_4:68173961-68173980 | Msa0698040:CDS | 45.0% | |
| TTTGTAATGCGGGTCGAGAT+GGG | + | chr4_4:68173962-68173981 | Msa0698040:CDS | 45.0% | |
| GGATTGAGACTATCCGTATG+TGG | + | chr4_4:68173983-68174002 | Msa0698040:CDS | 45.0% | |
| !!! | CCAGTTGCTTTTGCCACATA+CGG | - | chr4_4:68173999-68174018 | None:intergenic | 45.0% |
| AATAAGCGACCATTGACCGA+AGG | + | chr4_4:68174045-68174064 | Msa0698040:CDS | 45.0% | |
| ATAAGCGACCATTGACCGAA+GGG | + | chr4_4:68174046-68174065 | Msa0698040:CDS | 45.0% | |
| ! | AGCGTCATAGATCTTTTGGG+AGG | + | chr4_4:68174151-68174170 | Msa0698040:CDS | 45.0% |
| GCAAGGATAGTCATTCGACT+AGG | + | chr4_4:68174184-68174203 | Msa0698040:CDS | 45.0% | |
| ! | CACATTCATGGAGTGTCTCT+AGG | + | chr4_4:68174217-68174236 | Msa0698040:CDS | 45.0% |
| !! | TGCAATGGACTGTAGTTGCT+TGG | - | chr4_4:68174256-68174275 | None:intergenic | 45.0% |
| GACAAGGAATAGCTGCAACA+AGG | - | chr4_4:68174380-68174399 | None:intergenic | 45.0% | |
| TGTTGCAGCTATTCCTTGTC+AGG | + | chr4_4:68174380-68174399 | Msa0698040:CDS | 45.0% | |
| CAGCTATTCCTTGTCAGGAT+AGG | + | chr4_4:68174385-68174404 | Msa0698040:CDS | 45.0% | |
| GCTATTCCTTGTCAGGATAG+GGG | + | chr4_4:68174387-68174406 | Msa0698040:CDS | 45.0% | |
| ! | CTTTCTTCTTTGACTCGTCC+AGG | - | chr4_4:68174485-68174504 | None:intergenic | 45.0% |
| GAAACTGAGCAGAATCTACC+AGG | - | chr4_4:68174578-68174597 | None:intergenic | 45.0% | |
| !! | AGAAGCTTTTAGAGACGGGT+TGG | + | chr4_4:68174659-68174678 | Msa0698040:CDS | 45.0% |
| !! | GATAGTTGATAGCCGAACTG+AGG | + | chr4_4:68174719-68174738 | Msa0698040:CDS | 45.0% |
| !! | TAGTTGATAGCCGAACTGAG+GGG | + | chr4_4:68174721-68174740 | Msa0698040:CDS | 45.0% |
| !!! | ATAAAGTTATTATATTTTTT+TGG | + | chr4_4:68170808-68170827 | Msa0698040:intron | 5.0% |
| !!! | TAAAGTTATTATATTTTTTT+GGG | + | chr4_4:68170809-68170828 | Msa0698040:intron | 5.0% |
| CTTTAGTCCCTGAATGGGAG+AGG | + | chr4_4:68171968-68171987 | Msa0698040:intron | 50.0% | |
| GACGAATCCTCTCCCATTCA+GGG | - | chr4_4:68171978-68171997 | None:intergenic | 50.0% | |
| TGACGAATCCTCTCCCATTC+AGG | - | chr4_4:68171979-68171998 | None:intergenic | 50.0% | |
| GTCCCTGCATGGTCAATTTC+AGG | + | chr4_4:68172033-68172052 | Msa0698040:intron | 50.0% | |
| GTCCCTGAAATTGACCATGC+AGG | - | chr4_4:68172039-68172058 | None:intergenic | 50.0% | |
| TGACGAATCCCTTCCGATTC+AGG | + | chr4_4:68172189-68172208 | Msa0698040:intron | 50.0% | |
| GACGAATCCCTTCCGATTCA+GGG | + | chr4_4:68172190-68172209 | Msa0698040:intron | 50.0% | |
| ACGCTTCCCTTCAACTCAAC+TGG | + | chr4_4:68172905-68172924 | Msa0698040:CDS | 50.0% | |
| CTTCCCTTCAACTCAACTGG+TGG | + | chr4_4:68172908-68172927 | Msa0698040:CDS | 50.0% | |
| !! | ACGCCACCAGTTGAGTTGAA+GGG | - | chr4_4:68172914-68172933 | None:intergenic | 50.0% |
| !! | AACGCCACCAGTTGAGTTGA+AGG | - | chr4_4:68172915-68172934 | None:intergenic | 50.0% |
| GCGAAAGACCAAAGCAAGGT+GGG | - | chr4_4:68172955-68172974 | None:intergenic | 50.0% | |
| AGCGAAAGACCAAAGCAAGG+TGG | - | chr4_4:68172956-68172975 | None:intergenic | 50.0% | |
| CCTAGCGAAAGACCAAAGCA+AGG | - | chr4_4:68172959-68172978 | None:intergenic | 50.0% | |
| ! | CCTTGCTTTGGTCTTTCGCT+AGG | + | chr4_4:68172956-68172975 | Msa0698040:CDS | 50.0% |
| TGGTCTTTCGCTAGGGTTTC+AGG | + | chr4_4:68172964-68172983 | Msa0698040:CDS | 50.0% | |
| GTGTTGTGAGGATCTTGAGG+GGG | + | chr4_4:68173552-68173571 | Msa0698040:intron | 50.0% | |
| TGTTGTGAGGATCTTGAGGG+GGG | + | chr4_4:68173553-68173572 | Msa0698040:CDS | 50.0% | |
| !! | AGAAGGGCTCTGATTTTCCG+TGG | - | chr4_4:68173614-68173633 | None:intergenic | 50.0% |
| GATGTCATACGATCCATGGG+AGG | - | chr4_4:68173907-68173926 | None:intergenic | 50.0% | |
| CCGTATGTGGCAAAAGCAAC+TGG | + | chr4_4:68173996-68174015 | Msa0698040:CDS | 50.0% | |
| CTAAACTGCCCTTCGGTCAA+TGG | - | chr4_4:68174057-68174076 | None:intergenic | 50.0% | |
| CATTGACCGAAGGGCAGTTT+AGG | + | chr4_4:68174055-68174074 | Msa0698040:CDS | 50.0% | |
| !! | GGCACTGATGGATTTAGCAC+TGG | + | chr4_4:68174089-68174108 | Msa0698040:CDS | 50.0% |
| GCAATCTCATTTGCACGAGG+TGG | - | chr4_4:68174291-68174310 | None:intergenic | 50.0% | |
| GCAGCAATCTCATTTGCACG+AGG | - | chr4_4:68174294-68174313 | None:intergenic | 50.0% | |
| CAGTTGCCTCACTTTACGAC+CGG | + | chr4_4:68174457-68174476 | Msa0698040:CDS | 50.0% | |
| ! | TCTTTGACTCGTCCAGGATC+CGG | - | chr4_4:68174479-68174498 | None:intergenic | 50.0% |
| !! | AAAGAGCACCGGAACTCAAG+CGG | + | chr4_4:68174501-68174520 | Msa0698040:CDS | 50.0% |
| AATCTACCAGGTCCGTCAAG+TGG | - | chr4_4:68174566-68174585 | None:intergenic | 50.0% | |
| !! | TAGAGACGGGTTGGATCCAT+TGG | + | chr4_4:68174668-68174687 | Msa0698040:CDS | 50.0% |
| TGAGGATCTTGAGGGGGGTT+TGG | + | chr4_4:68173558-68173577 | Msa0698040:CDS | 55.0% | |
| !! | GGGCTCTGATTTTCCGTGGA+AGG | - | chr4_4:68173610-68173629 | None:intergenic | 55.0% |
| GTTTGGTATGAGGCAGGACC+AGG | + | chr4_4:68173666-68173685 | Msa0698040:CDS | 55.0% | |
| GCAGGACCAGGTTCATTCTG+TGG | + | chr4_4:68173678-68173697 | Msa0698040:CDS | 55.0% | |
| TGACCGAAGGGCAGTTTAGG+AGG | + | chr4_4:68174058-68174077 | Msa0698040:CDS | 55.0% | |
| GACCGAAGGGCAGTTTAGGA+GGG | + | chr4_4:68174059-68174078 | Msa0698040:CDS | 55.0% | |
| GCAGTTTAGGAGGGCGAGAA+AGG | + | chr4_4:68174068-68174087 | Msa0698040:CDS | 55.0% | |
| ! | TGGGAGGCATAACTCGAGCA+AGG | + | chr4_4:68174167-68174186 | Msa0698040:CDS | 55.0% |
| ! | CATGGAGTGTCTCTAGGTCC+TGG | + | chr4_4:68174223-68174242 | Msa0698040:CDS | 55.0% |
| TAGTTGCTTGGCTGCAGACC+AGG | - | chr4_4:68174244-68174263 | None:intergenic | 55.0% | |
| CATTTGCACGAGGTGGAACC+AGG | - | chr4_4:68174284-68174303 | None:intergenic | 55.0% | |
| CAGGATCCGGTCGTAAAGTG+AGG | - | chr4_4:68174466-68174485 | None:intergenic | 55.0% | |
| CTCACTTTACGACCGGATCC+TGG | + | chr4_4:68174464-68174483 | Msa0698040:CDS | 55.0% | |
| TCAGCAAGCCGCTTGAGTTC+CGG | - | chr4_4:68174512-68174531 | None:intergenic | 55.0% | |
| !! | GAACTCAAGCGGCTTGCTGA+AGG | + | chr4_4:68174512-68174531 | Msa0698040:CDS | 55.0% |
| GGGAATCAAGCCCCTCAGTT+CGG | - | chr4_4:68174734-68174753 | None:intergenic | 55.0% | |
| ACTGAGGGGCTTGATTCCCT+TGG | + | chr4_4:68174735-68174754 | Msa0698040:CDS | 55.0% | |
| !! | TGGTGGCGGGGGTTGAACAA+CGG | - | chr4_4:68170993-68171012 | None:intergenic | 60.0% |
| TCTTGAGGGGGGTTTGGCTG+AGG | + | chr4_4:68173564-68173583 | Msa0698040:CDS | 60.0% | |
| CTTGAGGGGGGTTTGGCTGA+GGG | + | chr4_4:68173565-68173584 | Msa0698040:CDS | 60.0% | |
| GGGGTTTGGCTGAGGGTTGT+GGG | + | chr4_4:68173572-68173591 | Msa0698040:CDS | 60.0% | |
| CGCCCTCCTAAACTGCCCTT+CGG | - | chr4_4:68174064-68174083 | None:intergenic | 60.0% | |
| !! | GAGGGCGAGAAAGGCACTGA+TGG | + | chr4_4:68174077-68174096 | Msa0698040:CDS | 60.0% |
| TACCAGGTCCGTCAAGTGGC+GGG | - | chr4_4:68174562-68174581 | None:intergenic | 60.0% | |
| CTACCAGGTCCGTCAAGTGG+CGG | - | chr4_4:68174563-68174582 | None:intergenic | 60.0% | |
| ! | ATCCATTGGAGCGCCACGTG+AGG | + | chr4_4:68174682-68174701 | Msa0698040:CDS | 60.0% |
| ! | TCCATTGGAGCGCCACGTGA+GGG | + | chr4_4:68174683-68174702 | Msa0698040:CDS | 60.0% |
| TTCGGAACACCTCCCTCACG+TGG | - | chr4_4:68174698-68174717 | None:intergenic | 60.0% | |
| GGGGGTTTGGCTGAGGGTTG+TGG | + | chr4_4:68173571-68173590 | Msa0698040:CDS | 65.0% | |
| GACAGCCACCCGCCACTTGA+CGG | + | chr4_4:68174551-68174570 | Msa0698040:CDS | 65.0% | |
| TCCCTCACGTGGCGCTCCAA+TGG | - | chr4_4:68174687-68174706 | None:intergenic | 65.0% | |
| ! | ATTGGAGCGCCACGTGAGGG+AGG | + | chr4_4:68174686-68174705 | Msa0698040:CDS | 65.0% |
| ! | CAGGTCCGTCAAGTGGCGGG+TGG | - | chr4_4:68174559-68174578 | None:intergenic | 70.0% |
| ! | CACCCGCCACTTGACGGACC+TGG | + | chr4_4:68174557-68174576 | Msa0698040:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 68170769 | 68174779 | 68170769 | ID=Msa0698040;Name=Msa0698040 |
| chr4_4 | mRNA | 68170769 | 68174779 | 68170769 | ID=Msa0698040-mRNA-1;Parent=Msa0698040;Name=Msa0698040-mRNA-1;_AED=0.12;_eAED=0.20;_QI=0|0|0|0.5|0|0.16|6|0|463 |
| chr4_4 | exon | 68170769 | 68170774 | 68170769 | ID=Msa0698040-mRNA-1:exon:20202;Parent=Msa0698040-mRNA-1 |
| chr4_4 | exon | 68171472 | 68171479 | 68171472 | ID=Msa0698040-mRNA-1:exon:20203;Parent=Msa0698040-mRNA-1 |
| chr4_4 | exon | 68171642 | 68171650 | 68171642 | ID=Msa0698040-mRNA-1:exon:20204;Parent=Msa0698040-mRNA-1 |
| chr4_4 | exon | 68172871 | 68173003 | 68172871 | ID=Msa0698040-mRNA-1:exon:20205;Parent=Msa0698040-mRNA-1 |
| chr4_4 | exon | 68173463 | 68173468 | 68173463 | ID=Msa0698040-mRNA-1:exon:20206;Parent=Msa0698040-mRNA-1 |
| chr4_4 | exon | 68173553 | 68174779 | 68173553 | ID=Msa0698040-mRNA-1:exon:20207;Parent=Msa0698040-mRNA-1 |
| chr4_4 | CDS | 68170769 | 68170774 | 68170769 | ID=Msa0698040-mRNA-1:cds;Parent=Msa0698040-mRNA-1 |
| chr4_4 | CDS | 68171472 | 68171479 | 68171472 | ID=Msa0698040-mRNA-1:cds;Parent=Msa0698040-mRNA-1 |
| chr4_4 | CDS | 68171642 | 68171650 | 68171642 | ID=Msa0698040-mRNA-1:cds;Parent=Msa0698040-mRNA-1 |
| chr4_4 | CDS | 68172871 | 68173003 | 68172871 | ID=Msa0698040-mRNA-1:cds;Parent=Msa0698040-mRNA-1 |
| chr4_4 | CDS | 68173463 | 68173468 | 68173463 | ID=Msa0698040-mRNA-1:cds;Parent=Msa0698040-mRNA-1 |
| chr4_4 | CDS | 68173553 | 68174779 | 68173553 | ID=Msa0698040-mRNA-1:cds;Parent=Msa0698040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
