AlfalfaGEDB | Msa0698520

M. sativa cultivar zhongmu-4 / Msa0698520

KEGG: K13420
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009595 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010359 GO:0012505 GO:0016020 GO:0016043 GO:0016045 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022898 GO:0023052 GO:0031410 GO:0031982 GO:0032409 GO:0032412 GO:0032879 GO:0033036 GO:0033037 GO:0033554 GO:0034762 GO:0034765 GO:0036211 GO:0038023 GO:0042545 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051606 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0060089 GO:0065007 GO:0065009 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098542 GO:0098543 GO:0098581 GO:0098657 GO:0140096 GO:1901564 GO:1903959
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0698520	XP_013457339.1	95.407	1154	53	0	1	1154	1	1154	0.0	2085

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0698520	sp\|Q9FL28\|FLS2_ARATH	54.443	1159	509	10	6	1151	4	1156	0.0	1150

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0698520	A0A072UZX7	95.407	1154	53	0	1	1154	1	1154	0.0	2085

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0615470	Msa0698520	0.966002	2.420237e-125	-8.615850e-47
Msa0698520	Msa0698690	0.981278	3.348053e-152	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0698520	MtrunA17_Chr4g0051961	95.407	1154	53	0	1	1154	1	1154	0.0	2085
Msa0698520	MtrunA17_Chr1g0165901	35.648	1181	702	18	10	1149	77	1240	0.0	588
Msa0698520	MtrunA17_Chr2g0296601	33.708	1246	713	25	8	1155	6	1236	0.0	579
Msa0698520	MtrunA17_Chr1g0165231	35.801	1148	697	20	23	1149	27	1155	0.0	575
Msa0698520	MtrunA17_Chr1g0165301	35.801	1148	697	20	23	1149	27	1155	0.0	575
Msa0698520	MtrunA17_Chr2g0296591	33.871	1240	707	25	8	1149	6	1230	0.0	575
Msa0698520	MtrunA17_Chr1g0165221	34.982	1132	684	17	32	1149	36	1129	0.0	564
Msa0698520	MtrunA17_Chr1g0165211	34.659	1157	701	19	32	1149	32	1172	0.0	562
Msa0698520	MtrunA17_Chr5g0405191	33.419	1161	674	22	20	1148	16	1109	1.76e-174	544
Msa0698520	MtrunA17_Chr8g0362931	33.164	1179	680	27	26	1153	46	1167	3.94e-174	544

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0698520	AT5G46330.2	54.443	1159	509	10	6	1151	4	1156	0.0	1150
Msa0698520	AT5G46330.1	54.443	1159	509	10	6	1151	4	1156	0.0	1150
Msa0698520	AT4G20140.1	33.360	1229	708	23	29	1155	23	1242	0.0	585
Msa0698520	AT5G44700.1	33.361	1226	700	22	32	1155	29	1239	0.0	577
Msa0698520	AT5G63930.1	34.288	1152	637	23	25	1150	23	1080	4.43e-175	545
Msa0698520	AT1G35710.1	33.939	1155	645	22	31	1141	32	1112	1.43e-174	544
Msa0698520	AT5G63930.2	35.518	1053	609	18	122	1150	10	1016	1.05e-172	537
Msa0698520	AT5G63930.2	38.437	627	383	2	68	692	2	627	3.83e-116	386
Msa0698520	AT1G17230.1	33.247	1161	663	19	8	1150	8	1074	1.44e-171	536
Msa0698520	AT1G17230.2	33.247	1161	663	19	8	1150	8	1074	7.29e-171	535

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Find 218 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGCATGGAGAAGTGT+TGG	0.508735	4_4:-68878663	Msa0698520:CDS
AAAAGCCGTTGCAAATGGAA+CGG	0.633164	4_4:-68878723	Msa0698520:CDS
AAACCTTAGTACTCTAAGTT+TGG	0.344998	4_4:-68880739	Msa0698520:CDS
AAACTCACAGGATCAATTCC+AGG	0.492841	4_4:-68880276	Msa0698520:CDS
AAAGACAGGAAAGTAAGATT+TGG	0.405435	4_4:+68880813	None:intergenic
AAAGATATTGTAAATTTGTT+AGG	0.290498	4_4:+68881393	None:intergenic
AAAGTGGATGTGTTCAGCTT+TGG	0.435694	4_4:-68878824	Msa0698520:CDS
AAAGTTGAGCTGCACCAGGT+TGG	0.578559	4_4:+68879867	None:intergenic
AAGAAAAGTTGAGCTGCACC+AGG	0.540601	4_4:+68879863	None:intergenic
AAGCATCTCAAGCTTCGAGA+TGG	0.588211	4_4:+68880395	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGCTTCAATTTCAACTTCAA+TGG	+	chr4_4:68878490-68878509	None:intergenic	30.0%
GTTGAAATATTTCCAAGGAA+AGG	+	chr4_4:68878678-68878697	None:intergenic	30.0%
TAAGGTTACCTAATTCATGA+GGG	+	chr4_4:68878818-68878837	None:intergenic	30.0%
TTAAGGTTACCTAATTCATG+AGG	+	chr4_4:68878819-68878838	None:intergenic	30.0%
GTTATGTTGAATATGCTATC+AGG	+	chr4_4:68878891-68878910	None:intergenic	30.0%
TTCAATTTCAACAACCTTAC+TGG	-	chr4_4:68878930-68878949	Msa0698520:intron	30.0%
GGAACTATTCCATCAAATAT+AGG	-	chr4_4:68878951-68878970	Msa0698520:intron	30.0%
GAGATAACAAAGATCCTAAT+TGG	+	chr4_4:68879049-68879068	None:intergenic	30.0%
ACTAAATTTCCTAACTCATG+AGG	+	chr4_4:68879251-68879270	None:intergenic	30.0%
CATTACCAATTGTACTAGTT+TGG	-	chr4_4:68879616-68879635	Msa0698520:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	68878405	68882131	68878405	ID=Msa0698520;Name=Msa0698520
chr4_4	mRNA	68878405	68882131	68878405	ID=Msa0698520-mRNA-1;Parent=Msa0698520;Name=Msa0698520-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|1\|0.5\|1\|1\|1\|2\|151\|1155
chr4_4	exon	68878405	68878875	68878405	ID=Msa0698520-mRNA-1:exon:20536;Parent=Msa0698520-mRNA-1
chr4_4	exon	68878984	68882131	68878984	ID=Msa0698520-mRNA-1:exon:20535;Parent=Msa0698520-mRNA-1
chr4_4	CDS	68878984	68882131	68878984	ID=Msa0698520-mRNA-1:cds;Parent=Msa0698520-mRNA-1
chr4_4	CDS	68878556	68878875	68878556	ID=Msa0698520-mRNA-1:cds;Parent=Msa0698520-mRNA-1
chr4_4	three_prime_UTR	68878405	68878555	68878405	ID=Msa0698520-mRNA-1:three_prime_utr;Parent=Msa0698520-mRNA-1

Gene Sequence

>Msa0698520

ATGCCATCTCAAAACCTTAGTTTGACTCTAGTCATACTCATTTCAATTCTATCCATTATTGTTTCACATGTTGAAACATCAACCATTGAAGTTGAAATTGAAGCATTGAAAGCATTCAAAAAATCCATAACAAATGATCCAAACAAAGCTCTTGCAAATTGGATTGACACAATCCCTCATTGCAACTGGTCAGGCATTGCATGTAGCAATTCTTCAAAACATGTCATATCAATTTCACTTTTTGAACTTCAACTCCAAGGTGAGATTTCACCTTTCCTTGGAAATATTTCAACACTTCAACTTATTGATTTAACTTCAAATTCATTAACTGGTCAAATTCCACCTCAAATTAGTCTTTGCACTCAACTTACAACACTTTACCTTACTGGTAATTCTCTCTCAGGTTCAATCCCTCATGAATTAGGTAACCTTAAAATGTTGCAATATTTGGATATAGGTAATAACTATCTCAATGGAACCTTACCTGATAGCATATTCAACATAACTTCTTTATTAGGTATTGCTTTCAATTTCAACAACCTTACTGGAACTATTCCATCAAATATAGGGAATTTAGTTAACACTATACAGATTGGAGGATTTGGTAATAGTTTTGTTGGATCTATACCTGTTTCTATAGGCCAATTAGGATCTTTGTTATCTCTTGATTTTAGTCAAAATAAGTTATCAGGTGTCATACCTAGAGAGATTGGAAACCTAACAAATTTACAATATCTTTTATTGTTTCATAATTCATTGAGTGGAAAAATTCCTTCTGAGCTGGCTCTTTGTAGCAATCTTGTTAACCTTGAGTTATATGAAAATAAGTTCATTGGAAGTATTCCTCATGAGTTAGGAAATTTAGTTCAATTGGAAACTTTAAGGTTGTATGATAATAAATTGAACTCAACAATACCAGATTCTATATTTAAGTTGAAATCGTTAACGCGGTTAGGATTATCAGAGAATAACTTAGAGGGAACAATTTCTTCTGAGATTGGATCTTTGAGATCCTTAAAAGTGTTAACTCTTCATTTGAATAAGTTTACCGGGACGATTCCTTTGTCGATAACAAACTTGAGAAACTTGACATCTTTGTCCATGAGTCAGAATCTCCTTTCAGGTGAAATTCCTTCCAATATAGGTGTGCTTCAAAATTTGAAGTTTCTTGTCTTGAACGACAACTTTTTACATGGACCTGTTCCTCCTAGCATTACCAATTGTACTAGTTTGGTTAATGTGAGTTTATCTATTAATTCTTTAACTGGAAAAATTCCTGAGGGTTTTTCAAGGTTGCCAAATCTTACTTTCCTGTCTTTTACATCCAACAAAATGAGTGGTGAATTACCAGATGATCTTTTCAATTGCTCAAACCTTAGTACTCTAAGTTTGGCGGATAACAACTTCAGTGGATCAATAAAATCCGGTATCAAAAATCTGTTTAATCTCATGCGTTTACAGCTGAATGAAAATGCTTTCATAGGACCAATTCCACCGGAGATTGGAAACTTGAATAAACTCATCATTCTGTCACTTTCTGAAAATAGATTTTCAGGTCATATTCCAATAGAATTGTCCAAACTTTCTCTCCTTCAAGGACTCTCTCTTCATGACAATGCATTAGAAGGTACAATACCTGATAAACTTTCGGAACTAAAAGGATTGACTATACTTTTGCTGCATGAAAATAAGTTTTTTGGTCAAATACCAGATTCCATCTCGAAGCTTGAGATGCTTTCATACTTAGATCTTCATGGAAACAAACTTAATGGCTCTATTCCGAAAAGCATGGGGAAGCTTGATCATCTTTTAATGTTGGATCTCTCTCACAACAAACTCACAGGATCAATTCCAGGAGACGTCGTTGCACACTTCAAAGACATGCAGATGTATCTTAACCTTTCCTACAACCACTTTGTTGGAAGTGTTCCATCTGAACTAGGGATGTTGGAGATGGTGCAAGCGATAGATGTTTCAAACAATAATCTTTCAGGTTCCCTTCCAATGACACTTTCTGGGTGCAGAAACATGTTTAGTCTTGATTTCTCAGGAAACAATATTTCAGGTCCTATTCCTGCTGAAGTTTTTAGTGGCATGGACTTGCTTCAAAGCTTCAATCTTTCAAGAAATCATATAGATGGTGAAATACCCGAAAGCTTGTCTCAGATTATGAATCTTAGTTCCTTAGATCTTTCTCAGAATAACTTGAAGGGAACTATTCCTGAGGGATTCGCCAATCTTTCCAACCTGGTGCAGCTCAACTTTTCTTTCAATCAACTTGAAGGTCCTGTACCTTTGACTGGAATATTTTCACATATCAATGAATCTAGTATGATGGGAAACCAGGCTCTTTGTGGAGCAAAATTCCTAAGTCCATGCAGAGAGAACGATCATTCTCTATCCAAGAAGAGCATAGCTATCATTGCTGCACTTGGATCTCTTGCTGTACTTCTACTTGTAGTGCTTCTGATTTTATATTTCAACCGAGGCACCATGTTCGGTAATTCTATAAAGAGTGTTGATACTGAGAATCATGAATCAGTGAACGGTTCAGCATTGGCTCTTAAAAGATTCAGTCCAAAGGAGTTAGAAAATGCAACCGGTTGTTTCAGCTCAGACTACATCATTGGTTCTAGCAGTTTGAGCACCGTTTACAAGGGTCAATTTGAAGATGGTCAGATTGTAGCCATAAAAAGGTTGAATTTGCACCAATTCTCAGCAAATACCGACAAGATATTCAAGAGAGAAGCCAGCACCTTGTGCCAGCTGAGACATAGGAATTTAGTTAAGATACATGGATATGCTTGGGAAAGCCAGAAAACAAAGGCTTTAGTTCTAGAGTACATGGAGAATGGGAATTTGGATAGCATCATACATGACAGAGAAGTTGATCAGTCGAGGTGGACATTATCTGAAAGACTCCGAGTTTTCATTTCTATTGCTAGTGGATTGGATTACTTGCACTCTGGTTATGATTTTCCCATTGTGCATTGTGATCTAAAGCCTTCTAACATCCTTTTAGATAGAGATTTTGAAGCTCATGTCAGTGATTTCGGGACAGCTCGAATACTAGGCCTTCATCTGCAGGATGGCAGTGCCCTTTCCTCAACAGCAGCTTTGCAAGGCACAATTGGCTATTTGGCACCAGAATTCGCCTACATGAGGAAAGTAACGACGAAAGTGGATGTGTTCAGCTTTGGCATCATAGTACTGGAATTTCTAACAAAAATAAGGCCAACAGGGCTCTCAGAATCAACCAGTTTGCGCGATGTGGTAGCAAAAGCCGTTGCAAATGGAACGGAACAGCTTGTCGGCATTGTGGACCCTGAATTGATCACAAAAGAGCATGGAGAAGTGTTGGAAGAGCTCTTTAAGCTTTCATTGTGCTGCACCCTCTCTGATCCTGAACATCGTCCTAATATGAATGAAGTTTTATCTGTACTTGTGAAGCTTAACACAGCAAGATAG

Protein sequence

>Msa0698520

MPSQNLSLTLVILISILSIIVSHVETSTIEVEIEALKAFKKSITNDPNKALANWIDTIPHCNWSGIACSNSSKHVISISLFELQLQGEISPFLGNISTLQLIDLTSNSLTGQIPPQISLCTQLTTLYLTGNSLSGSIPHELGNLKMLQYLDIGNNYLNGTLPDSIFNITSLLGIAFNFNNLTGTIPSNIGNLVNTIQIGGFGNSFVGSIPVSIGQLGSLLSLDFSQNKLSGVIPREIGNLTNLQYLLLFHNSLSGKIPSELALCSNLVNLELYENKFIGSIPHELGNLVQLETLRLYDNKLNSTIPDSIFKLKSLTRLGLSENNLEGTISSEIGSLRSLKVLTLHLNKFTGTIPLSITNLRNLTSLSMSQNLLSGEIPSNIGVLQNLKFLVLNDNFLHGPVPPSITNCTSLVNVSLSINSLTGKIPEGFSRLPNLTFLSFTSNKMSGELPDDLFNCSNLSTLSLADNNFSGSIKSGIKNLFNLMRLQLNENAFIGPIPPEIGNLNKLIILSLSENRFSGHIPIELSKLSLLQGLSLHDNALEGTIPDKLSELKGLTILLLHENKFFGQIPDSISKLEMLSYLDLHGNKLNGSIPKSMGKLDHLLMLDLSHNKLTGSIPGDVVAHFKDMQMYLNLSYNHFVGSVPSELGMLEMVQAIDVSNNNLSGSLPMTLSGCRNMFSLDFSGNNISGPIPAEVFSGMDLLQSFNLSRNHIDGEIPESLSQIMNLSSLDLSQNNLKGTIPEGFANLSNLVQLNFSFNQLEGPVPLTGIFSHINESSMMGNQALCGAKFLSPCRENDHSLSKKSIAIIAALGSLAVLLLVVLLILYFNRGTMFGNSIKSVDTENHESVNGSALALKRFSPKELENATGCFSSDYIIGSSSLSTVYKGQFEDGQIVAIKRLNLHQFSANTDKIFKREASTLCQLRHRNLVKIHGYAWESQKTKALVLEYMENGNLDSIIHDREVDQSRWTLSERLRVFISIASGLDYLHSGYDFPIVHCDLKPSNILLDRDFEAHVSDFGTARILGLHLQDGSALSSTAALQGTIGYLAPEFAYMRKVTTKVDVFSFGIIVLEFLTKIRPTGLSESTSLRDVVAKAVANGTEQLVGIVDPELITKEHGEVLEELFKLSLCCTLSDPEHRPNMNEVLSVLVKLNTAR*