AlfalfaGEDB | Msa0701230

M. sativa cultivar zhongmu-4 / Msa0701230

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009625 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010154 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046777 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0071704 GO:0140096 GO:1901564
PFAM: PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0701230	XP_003629782.1	91.785	633	43	4	1	631	1	626	0.0	1131

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0701230	sp\|Q9FK63\|CARLK_ARATH	52.688	651	251	13	21	628	25	661	0.0	637

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0701230	G7LJF3	91.785	633	43	4	1	631	1	626	0.0	1131

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0541720	Msa0701230	0.998998	2.557887e-285	-8.615850e-47
Msa0701230	Msa1174240	0.997443	1.250338e-242	-8.615850e-47
Msa0701230	Msa1267910	0.999114	6.221253e-291	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0701230	MtrunA17_Chr8g0379161	91.785	633	43	4	1	631	1	626	0.0	1131
Msa0701230	MtrunA17_Chr2g0284041	61.039	693	205	11	1	630	1	691	0.0	800
Msa0701230	MtrunA17_Chr4g0074031	37.727	607	304	21	82	630	258	848	1.74e-102	330
Msa0701230	MtrunA17_Chr4g0074031	32.099	243	144	10	8	234	9	246	1.57e-13	73.9
Msa0701230	MtrunA17_Chr1g0203631	31.691	609	321	19	66	628	709	1268	5.65e-63	226
Msa0701230	MtrunA17_Chr1g0203631	31.658	199	117	6	57	239	501	696	2.18e-11	67.4
Msa0701230	MtrunA17_Chr1g0203631	32.778	180	111	6	56	229	117	292	8.30e-11	65.5
Msa0701230	MtrunA17_Chr3g0129391	30.866	554	302	15	117	629	638	1151	2.25e-56	206
Msa0701230	MtrunA17_Chr8g0375511	29.948	581	309	19	94	630	602	1128	3.86e-55	203
Msa0701230	MtrunA17_Chr3g0079661	27.536	690	340	18	50	629	553	1192	3.34e-54	200

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0701230	AT5G45800.1	52.688	651	251	13	21	628	25	661	0.0	637
Msa0701230	AT5G45800.2	48.337	451	188	9	21	434	25	467	4.16e-128	387
Msa0701230	AT2G24230.1	36.007	611	309	17	82	630	259	849	2.10e-95	312
Msa0701230	AT2G24230.1	29.268	246	154	10	4	234	7	247	3.67e-16	83.2
Msa0701230	AT5G58150.1	32.630	616	328	18	61	631	211	784	1.13e-75	258
Msa0701230	AT5G58150.1	38.650	163	89	5	85	239	190	349	7.86e-14	75.5
Msa0701230	AT5G07280.1	32.432	629	326	19	57	628	606	1192	7.78e-73	255
Msa0701230	AT5G07280.1	34.615	156	97	4	78	229	111	265	1.58e-11	68.2
Msa0701230	AT4G39400.1	31.429	560	307	15	111	629	636	1159	1.80e-59	216
Msa0701230	AT4G39400.1	31.220	205	112	4	66	241	351	555	4.79e-11	66.6

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Find 152 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAGAAGGGAAATTAC+CGG	0.449610	4_4:-72624094	None:intergenic
AAACAGAATCAGGTTCAACA+TGG	0.549823	4_4:+72624424	Msa0701230:CDS
AAACTAGACCAAAACCAGCT+TGG	0.580232	4_4:-72623751	None:intergenic
AAACTGAAAACACTTCCCTT+AGG	0.466695	4_4:+72623949	Msa0701230:CDS
AAAGAAAATATTTAAAACAG+GGG	0.616872	4_4:-72623399	None:intergenic
AAAGAGTCACAGCTAGCAGA+AGG	0.595614	4_4:+72624552	Msa0701230:CDS
AAAGCTTTCAAATTTGTTTC+TGG	0.128322	4_4:+72623556	Msa0701230:CDS
AAATGTTGGAGGTGACAAGG+TGG	0.712987	4_4:-72626204	None:intergenic
AACAATCATTGCGGTTAGAA+AGG	0.487558	4_4:+72626369	Msa0701230:CDS
AACACAAAGGTTGAGAAAAC+AGG	0.460190	4_4:+72624387	Msa0701230:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGATTATAAACACATGCAAG+AGG	-	chr4_4:72623338-72623357	None:intergenic	30.0%
GAGAATCAAGAATCTGTAAA+AGG	-	chr4_4:72623473-72623492	None:intergenic	30.0%
AACAGTTTGAACTTCTTGTT+TGG	-	chr4_4:72623600-72623619	None:intergenic	30.0%
TTACAAATTCTTGATCTCTC+TGG	+	chr4_4:72623706-72623725	Msa0701230:CDS	30.0%
AACCTCTCAAGAAACAAATT+TGG	+	chr4_4:72623793-72623812	Msa0701230:CDS	30.0%
AAAATCAGAAGGGAAATTAC+CGG	-	chr4_4:72624097-72624116	None:intergenic	30.0%
GATTCTGTTTCAAACTCAAA+TGG	-	chr4_4:72624414-72624433	None:intergenic	30.0%
TTGAATGTGAAGTTCATCAA+TGG	-	chr4_4:72624501-72624520	None:intergenic	30.0%
ACTATCATTAATGGCTTTCA+CGG	+	chr4_4:72624815-72624834	Msa0701230:intron	30.0%
TCTTAAGTGTTACACTTTGT+GGG	+	chr4_4:72625190-72625209	Msa0701230:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	72623268	72626628	72623268	ID=Msa0701230;Name=Msa0701230
chr4_4	mRNA	72623268	72626628	72623268	ID=Msa0701230-mRNA-1;Parent=Msa0701230;Name=Msa0701230-mRNA-1;_AED=0.01;_eAED=0.01;_QI=195\|1\|1\|1\|1\|1\|2\|37\|637
chr4_4	exon	72623268	72624744	72623268	ID=Msa0701230-mRNA-1:exon:22194;Parent=Msa0701230-mRNA-1
chr4_4	exon	72625960	72626628	72625960	ID=Msa0701230-mRNA-1:exon:22195;Parent=Msa0701230-mRNA-1
chr4_4	five_prime_UTR	72623268	72623462	72623268	ID=Msa0701230-mRNA-1:five_prime_utr;Parent=Msa0701230-mRNA-1
chr4_4	CDS	72623463	72624744	72623463	ID=Msa0701230-mRNA-1:cds;Parent=Msa0701230-mRNA-1
chr4_4	CDS	72625960	72626591	72625960	ID=Msa0701230-mRNA-1:cds;Parent=Msa0701230-mRNA-1
chr4_4	three_prime_UTR	72626592	72626628	72626592	ID=Msa0701230-mRNA-1:three_prime_utr;Parent=Msa0701230-mRNA-1

Gene Sequence

>Msa0701230

ATGAAACCCTTTTACAGATTCTTGATTCTCCTAACCATGCTTTCATTAGCAGAATCTTCATGCAACATTGAAGAAGACCAAATCTTAATTTCAAAAGCTTTCAAATTTGTTTCTGGCTTCAACTCTTCCACCTTCCAAACAAGAAGTTCAAACTGTTCAAACTCTCATATCACCAAAATAGTTCTTCCCTCCAAAAATCTAACCGGAACAATTTCATGGGGTTATCTCAAAAACATCTCAAACTTACAAATTCTTGATCTCTCTGGAAATTCTCTACAAGGCCATGTACCAAGCTGGTTTTGGTCTAGTTTTTCATCCTTATTACAAATAAACCTCTCAAGAAACAAATTTGGAGGAAGCATCACCATTGAGTTGAACAATAACACCTCAACCGTTCAAAACCTCAATCTCTCACACAACAGGTTCAGTAACGTTGTTCAACTTTCTAGCTTCCAAAACCTTAAAATCCTTGACCTTTCTCACAACAAACTGAAAACACTTCCCTTAGGTTTTCAAAACCTTACCAAACTACAACACCTTGATCTTTCAAGCTGCAATCTCAAAGATAACATAAAACCCATTTCTTCTTTACACAATCTTCACTACTTAGATTTATCAAACAACACTTTAACCGGTAATTTCCCTTCTGATTTTCCTCCACTTCACAATCTCAAATTCCTCAACATTTCACAAAACAACTTCACATATCACAAGCCAAACCAAAATCCAAAACAAAACATCATTCATAGAAAACAAATCAAACCAACATCCAAAAGATTGATACTTATAGTGTGTTCTATAATATCAACACTTGTTCTAGCTATTATTTCCATTTGGGTCATCTTTATTATAAACAAAAGGATGAAACAACGTTCCAAGATAAAAAAATGGGCTATCTCATTACCAGTTATGATGAACACGACAAACACAAAGGTTGAGAAAACAGGACCATTTGAGTTTGAAACAGAATCAGGTTCAACATGGGTTGCAGATGTGAAAGAACCAACATCTGCAGCAGTGGTGATGTTTGAGAAACCATTGATGAACTTCACATTCAAAGATCTCATCATTGCCACGTCACATTTCGGGAAAGAGTCACAGCTAGCAGAAGGAAGGTGTGGACCAGTGTATTGGGCCGTGTTACCCGGTGAAATACACGTGGCAATCAAGGTTCTTGAACATGTCAGAGATGTTGATTATGATGACTCTGTGGCTATGTTTGTTGAATTATCGAAACTGAAACATCCAAACTTGTTGCCTCTTTCTGGTTACTGTATTGCAGGAAAAGAGAAGCTAGTGTTGTACGAGTTTATGGCAAACGGAGATTTAGGTAGATGGCTACACGAGCTTCCAACTGGGGATACCAACATCGAGGATTGGACTGGCGACACGTGGGAGTTCCAAAATAGCGTCGTCGAATCATCCTCGGAGAAGATGGGTTGGCTAACACGCCACCGTATCGCGGTAGGGATAGCGCGTGGCCTCGCATATCTCCACCACGCAGGTTCAAAACCTGTCATACATGGCCACCTTGTCACCTCCAACATTTTACTCACCGATAACTTTGAGCCCCGAATCTCCGATTTTGGATTGCGGATCCACTCTTGTCGTAATGGTGGCACTGAGTTTGATGTGTACTGCTTTGGAGTGGTGTTGATGGAACTTCTGACCGGGAAGATTGGCACAATGGCAACAATCATTGCGGTTAGAAAGGCAGTGAGAGAGGGACAACATGTTAGAGTCCTTGATGAGAGGTTGCTACTTCGAGGCGACTCAGCCGTGAGTGAGATGGTGGAGAGCCTCGTAATCGCTGTCTTGTGCACGGCTGAATCGCCTTCTAAGAGACCTACCATGCAACAGGTTTTGGGCTTACTCAAAGATATTCATCCTCATGAATTACTTGTTCTAAGTTGA

Protein sequence

>Msa0701230

MKPFYRFLILLTMLSLAESSCNIEEDQILISKAFKFVSGFNSSTFQTRSSNCSNSHITKIVLPSKNLTGTISWGYLKNISNLQILDLSGNSLQGHVPSWFWSSFSSLLQINLSRNKFGGSITIELNNNTSTVQNLNLSHNRFSNVVQLSSFQNLKILDLSHNKLKTLPLGFQNLTKLQHLDLSSCNLKDNIKPISSLHNLHYLDLSNNTLTGNFPSDFPPLHNLKFLNISQNNFTYHKPNQNPKQNIIHRKQIKPTSKRLILIVCSIISTLVLAIISIWVIFIINKRMKQRSKIKKWAISLPVMMNTTNTKVEKTGPFEFETESGSTWVADVKEPTSAAVVMFEKPLMNFTFKDLIIATSHFGKESQLAEGRCGPVYWAVLPGEIHVAIKVLEHVRDVDYDDSVAMFVELSKLKHPNLLPLSGYCIAGKEKLVLYEFMANGDLGRWLHELPTGDTNIEDWTGDTWEFQNSVVESSSEKMGWLTRHRIAVGIARGLAYLHHAGSKPVIHGHLVTSNILLTDNFEPRISDFGLRIHSCRNGGTEFDVYCFGVVLMELLTGKIGTMATIIAVRKAVREGQHVRVLDERLLLRGDSAVSEMVESLVIAVLCTAESPSKRPTMQQVLGLLKDIHPHELLVLS*