AlfalfaGEDB | Msa0702760

M. sativa cultivar zhongmu-4 / Msa0702760

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF19160.3

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0702760	RHN42782.1	62.460	626	221	6	1	616	1	622	0.0	801
Msa0702760	RHN42782.1	95.300	617	29	0	1	617	675	1291	0.0	1199

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0702760	sp\|O04086\|Y1105_ARATH	55.132	604	243	11	20	614	22	606	0.0	619

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0702760	A0A396GNV4	62.460	626	221	6	1	616	1	622	0.0	801
Msa0702760	A0A396GNV4	95.300	617	29	0	1	617	675	1291	0.0	1199

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0566230	Msa0702760	0.833104	6.460983e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0702760	MtrunA17_Chr8g0380681	95.300	617	29	0	1	617	675	1291	0.0	1199
Msa0702760	MtrunA17_Chr8g0380681	62.460	626	221	6	1	616	1	622	0.0	801
Msa0702760	MtrunA17_Chr2g0277731	56.109	622	253	11	4	615	9	620	0.0	664
Msa0702760	MtrunA17_Chr1g0159611	52.520	377	158	8	235	611	178	533	1.69e-123	376
Msa0702760	MtrunA17_Chr1g0159611	38.235	136	75	3	5	139	51	178	3.40e-23	103
Msa0702760	MtrunA17_Chr1g0196391	35.342	614	345	19	6	606	13	587	6.39e-102	323
Msa0702760	MtrunA17_Chr7g0259211	33.907	581	349	14	32	604	21	574	6.41e-100	318
Msa0702760	MtrunA17_Chr2g0315061	41.875	320	170	7	293	610	25	330	2.89e-73	240
Msa0702760	MtrunA17_Chr5g0433941	40.054	372	188	11	234	600	312	653	2.54e-70	241
Msa0702760	MtrunA17_Chr2g0314911	43.279	305	159	5	293	597	650	940	8.65e-70	244

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0702760	AT1G11050.1	55.132	604	243	11	20	614	22	606	0.0	619
Msa0702760	AT2G48010.1	34.267	607	350	17	9	605	9	576	3.49e-102	323
Msa0702760	AT5G55830.1	37.435	382	205	9	224	600	297	649	8.02e-72	244
Msa0702760	AT1G29720.1	42.718	309	161	7	291	599	659	951	6.08e-69	242
Msa0702760	AT5G45780.2	38.992	377	197	9	224	595	186	534	1.74e-68	233
Msa0702760	AT3G26940.1	41.528	301	164	3	293	591	62	352	4.90e-68	228
Msa0702760	AT5G45780.1	38.992	377	197	9	224	595	229	577	6.10e-68	233
Msa0702760	AT3G53380.1	38.992	377	187	12	234	600	318	661	1.43e-67	234
Msa0702760	AT1G53440.1	37.802	373	204	7	231	602	606	951	1.80e-67	238
Msa0702760	AT5G06740.1	40.446	314	166	8	293	600	318	616	2.05e-67	232

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Find 106 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTCATTGGAAGAGGC+GGG	0.528983	4_4:-74520967	Msa0702760:CDS
AAACTCCACTAGAAGCATAA+TGG	0.449826	4_4:-74520225	Msa0702760:CDS
AAACTTGGTCCTGAGAGTAC+AGG	0.585034	4_4:-74521286	Msa0702760:CDS
AAATTCAAACCAAACAAGAT+TGG	0.428955	4_4:-74521507	Msa0702760:CDS
AAATTGAAGTGAGGCTAGTT+TGG	0.363941	4_4:+74521602	None:intergenic
AAGAGTGATGTCTATAGTTT+TGG	0.323347	4_4:-74520398	Msa0702760:CDS
AAGGGTTGCAGATTTCGGGC+TGG	0.558348	4_4:-74520525	Msa0702760:CDS
AATTTGTCTCAACAGTTCCT+TGG	0.454453	4_4:-74521801	Msa0702760:CDS
AATTTGTTATCACATAATGG+TGG	0.638427	4_4:-74521091	Msa0702760:CDS
ACAACACAACATCCTCTTAG+CGG	0.572453	4_4:+74520803	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTATGTAGACAAGAAGTTG+AGG	+	chr4_4:74520320-74520339	None:intergenic	30.0%
TTTGTTAAGCCAATCTTGTT+TGG	+	chr4_4:74520449-74520468	None:intergenic	30.0%
TGATCTGAATCTGTTAAATC+TGG	+	chr4_4:74520514-74520533	None:intergenic	30.0%
TGAGTTTAAGGATCTTGTAA+AGG	-	chr4_4:74520933-74520952	Msa0702760:CDS	30.0%
ATTGAAGAGTCTGATTATCA+AGG	-	chr4_4:74521057-74521076	Msa0702760:CDS	30.0%
GTTTATGATTATATGCCGAA+TGG	-	chr4_4:74521204-74521223	Msa0702760:CDS	30.0%
TATCCATTTCAGGAAAAAGA+TGG	+	chr4_4:74521242-74521261	None:intergenic	30.0%
ATGCAAAACAATCTTTGACT+TGG	-	chr4_4:74521268-74521287	Msa0702760:CDS	30.0%
TTGATATCTCTGTGATAAAC+AGG	+	chr4_4:74521363-74521382	None:intergenic	30.0%
TGAGATAATGTGTGGAAAAA+AGG	-	chr4_4:74521581-74521600	Msa0702760:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	74520055	74521911	74520055	ID=Msa0702760;Name=Msa0702760
chr4_4	mRNA	74520055	74521911	74520055	ID=Msa0702760-mRNA-1;Parent=Msa0702760;Name=Msa0702760-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|618
chr4_4	exon	74520055	74521911	74520055	ID=Msa0702760-mRNA-1:exon:23257;Parent=Msa0702760-mRNA-1
chr4_4	CDS	74520055	74521911	74520055	ID=Msa0702760-mRNA-1:cds;Parent=Msa0702760-mRNA-1

Gene Sequence

>Msa0702760

ATGAAATCTAGTTTGGTTCTTTTCCTTGTTTTTCTCATCATAGTTACAACAGATGCATCAAACTCAACAACATGTCCAGTGTCTATGAAATTTGTCTCAACAGTTCCTTGGAACAAATCTCTTTGTCATAACTTCAAACCTTTAACATCCAAAACAGAAACACGAGAAACTCTTTGTTGTAAAACTCTTTTGTCTCTCTTTGGTATAGCACTTGCTGAAAATCTAAACAAGAACTCACTTTTCAATTTTCATAACATAACTACCTCAACTTCTTGTCTACATAATTACCAAACTAGCCTCACTTCAATTTCACTTCCTAACAACCTCGTCTCTTCATGCTTTGATCCATCTCAATTTGTTGCCACACCAGAAACATGTGCTCAAATTCAAACCAAACAAGATTGGCTTAACAAAGTTGATTCAGCAGATTTAACTGTTCTTGATAATGTTTGTGAACCAGATTTAACAGATTCAGATCATTGTCATGTTTGTAAAAATCAAGGGTTTAAGGTTCAACAGATGCTGACGAAACTTGATGGTAATAGTTCACATTCTCAAGATTGTTTTTACTTTACAATACTATATATAGCTGGAATTGTGAATAAACTTGGTCCTGAGAGTACAGGTGTTTTGGCTTGTATTCTTATTTTGTTGCTTCCACATGAGGATTCTGAAAAGGAACATCATCATCATGCTCTTGTTATTGGATTGGTTGTAGCTTCATTTGTATTTTTATCATTTTTGTTAGGGTTATTTTACTTTTGGTATGTTTGGCGGGTGAAGAAAAGAAACAACGAAAATTTGTTATCACATAATGGTGGTTCACAAGTACCTAGTTTTAGTTTAAGAATTAGACCTAAAAGTGGGTTGATTTGGTTTGAGTTTAAGGATCTTGTAAAGGTTACTGACAACTTTTCGGCCCAAAATTTCATTGGAAGAGGCGGGTCTGGTTCGGTTTACAAGGGGGTTTTACCGGATGGGACGAATGTTGCGGTTAAAAAGATTGAAGAGTCTGATTATCAAGGAGATGTTGAGTTTTACAGAGAGGTGGGGATTGTTAGTAGCTTGAAGCATCGCAATTTGGTGCCGCTAAGAGGATGTTGTGTTGTTGGTGAAGATGAGAATCCTGAGTACATGGGAAAGTATCTTGTTTATGATTATATGCCGAATGGTAGTCTTAAAGACCATCTTTTTCCTGAAATGGATAACCAAAATGCAAAACAATCTTTGACTTGGTCTCAAAGAAAAAACATAATCTTGGATGTGGCGAATGCGTTGGTTTATTTGCACTTTGGAGTTAAGCCTCCTGTTTATCACAGAGATATCAAAGCTACCAATATACTACTTGATGCAGGTATGAGAGCAAGGGTTGCAGATTTCGGGCTGGCGAAACAGGACTACAGTCAAAATATGTCTCAGCCAAATACTAGAGTAGCCGGAACTCGTGGATATCTAGCTCCAGAATATGCACTTTATGGTCAGTTAACCGAGAAGAGTGATGTCTATAGTTTTGGCGTGGTTGTTCTTGAGATAATGTGTGGAAAAAAGGCTCTTCAGTTGTCTTCGTCTGGAGAGCCTAATTTCTTGATCACGGATTGGGTTTGGTCGTTGATGAAATCTGGAAACACGATGAAGGCTTTGGATGCTTCTATATTATTGGATGGAAACTCCACTAGAAGCATAATGGAGAGATTTTTGATGGTTGGAATTTTGTGCTGTCATGTAGTGGTTGCTTTACGGCCCACAATTTTGGATGCTTTGAAGATGCTAGAAGGGGACATTGAGGTTCCACCAATTCCAGATAGGCTAATAGCTGTAGGGAATCGTATGTTTGCCAATGGTGATTCAACTTTATAG

Protein sequence

>Msa0702760

MKSSLVLFLVFLIIVTTDASNSTTCPVSMKFVSTVPWNKSLCHNFKPLTSKTETRETLCCKTLLSLFGIALAENLNKNSLFNFHNITTSTSCLHNYQTSLTSISLPNNLVSSCFDPSQFVATPETCAQIQTKQDWLNKVDSADLTVLDNVCEPDLTDSDHCHVCKNQGFKVQQMLTKLDGNSSHSQDCFYFTILYIAGIVNKLGPESTGVLACILILLLPHEDSEKEHHHHALVIGLVVASFVFLSFLLGLFYFWYVWRVKKRNNENLLSHNGGSQVPSFSLRIRPKSGLIWFEFKDLVKVTDNFSAQNFIGRGGSGSVYKGVLPDGTNVAVKKIEESDYQGDVEFYREVGIVSSLKHRNLVPLRGCCVVGEDENPEYMGKYLVYDYMPNGSLKDHLFPEMDNQNAKQSLTWSQRKNIILDVANALVYLHFGVKPPVYHRDIKATNILLDAGMRARVADFGLAKQDYSQNMSQPNTRVAGTRGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGKKALQLSSSGEPNFLITDWVWSLMKSGNTMKALDASILLDGNSTRSIMERFLMVGILCCHVVVALRPTILDALKMLEGDIEVPPIPDRLIAVGNRMFANGDSTL*